bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0001585
HIT000601728 (
ENST00000498508
)
(Prospero homeobox protein 1; Homeobox prospero-like protein PROX1; PROX-1;)
genome : 214,161,274 - 214,209,775 (48,502)
query : 1 - 3,670 (3,670/3,670)
5 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto_nucl 16, cyto 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001585)
HIX0001585
HIT000724778 (
NM_001270616
)
(Prospero homeobox protein 1; Homeobox prospero-like protein PROX1; PROX-1;)
genome : 214,161,278 - 214,214,853 (53,576)
query : 1 - 8,505 (8,505/8,505)
5 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto_nucl 16, cyto 8
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001585)
HIX0001585
HIT000492806
(
AK298182
)
(Prospero homeobox protein 1; Homeobox prospero-like protein PROX1; PROX-1;)
genome : 214,161,280 - 214,209,760 (48,481)
query : 1 - 1,640 (1,640/1,640)
5 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
InterPro :
IPR007738 : Prospero homeobox protein 1
IPR023082 : Homeo-prospero domain
GO :
0003677 : Molecular Function : DNA binding
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
0007275 : Biological Process : multicellular organismal development
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 16.5, cyto 11.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001585)
HIX0001585
HIT000348238 (
ENST00000366958
)
(Prospero homeobox protein 1; Homeobox prospero-like protein PROX1; PROX-1;)
genome : 214,161,286 - 214,214,853 (53,568)
query : 1 - 8,498 (8,498/8,498)
5 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto_nucl 16, cyto 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001585)
HIX0001585
HIT000219911
(
U44060
)
(Prospero homeobox protein 1; Homeobox prospero-like protein PROX1; PROX-1;)
genome : 214,161,286 - 214,209,282 (47,997)
query : 1 - 2,922 (2,922/2,924)
5 exons
identity = 0.994
5'(0.990)3'
coverage = 0.999
InterPro :
IPR007738 : Prospero homeobox protein 1
IPR023082 : Homeo-prospero domain
GO :
0003677 : Molecular Function : DNA binding
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
0007275 : Biological Process : multicellular organismal development
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto_nucl 16, cyto 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001585)
HIX0001585
HIT000199638 (
NM_002763
)
(Prospero homeobox protein 1; Homeobox prospero-like protein PROX1; PROX-1;)
genome : 214,161,844 - 214,214,853 (53,010)
query : 1 - 8,178 (8,178/8,178)
5 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto_nucl 16, cyto 8
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001585)
HIX0001585
HIT000039766
(
BC024201
)
Representative transcript
(Prospero homeobox protein 1; Homeobox prospero-like protein PROX1; PROX-1;)
genome : 214,161,860 - 214,209,761 (47,902)
query : 1 - 3,070 (3,070/3,088)
5 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
InterPro :
IPR007738 : Prospero homeobox protein 1
IPR023082 : Homeo-prospero domain
GO :
0003677 : Molecular Function : DNA binding
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
0007275 : Biological Process : multicellular organismal development
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto_nucl 16, cyto 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001585)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : BC051411
Danio
sp. (Zebrafish) : BC095584
Equus
sp. (Horse) : ENSECAT00000020419
Monodelphis
sp. (Opossum) : ENSMODT00000003994
Pongo
sp. (Orangutan) : ENSPPYT00000000246
Tetraodon
sp. (Tetraodon) : GSTENT00030367001
Tetraodon
sp. (Tetraodon) : GSTENT00032330001
Oryzias
sp. (Medaka) : NM_001161759
Oryzias
sp. (Medaka) : NM_001161760
Gallus
sp. (Chicken) : U46563
Rattus
sp. (Rat) : XM_001067440
Macaca
sp. (Macaque) : XM_001106612
Pan
sp. (Chimpanzee) : XM_514189
Canis
sp. (Dog) : XM_844123
Bos
sp. (Cow) : XM_876246
HIX0001585
HIT000532950 (
ENST00000435016
)
(Prospero homeobox protein 1; Homeobox prospero-like protein PROX1; PROX-1;)
genome : 214,161,860 - 214,209,760 (47,901)
query : 1 - 3,069 (3,069/3,069)
5 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto_nucl 16, cyto 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001585)
HIX0001585
HIT000107979 (
ENST00000261454
)
(Prospero homeobox protein 1; Homeobox prospero-like protein PROX1; PROX-1;)
genome : 214,169,879 - 214,209,760 (39,882)
query : 1 - 2,797 (2,797/2,797)
4 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto_nucl 16, cyto 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001585)
HIX0029190
HIT000090856
(
BC023996
)
Representative transcript
(Conserved hypothetical protein.)
genome : 214,202,237 - 214,204,109 (1,873)
query : 136 - 2,009 (1,874/2,038)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 0.933
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0029190)
HIX0001585
HIT000008727
(
AK025453
)
(Hypothetical protein.)
genome : 214,209,624 - 214,211,864 (2,241)
query : 1 - 2,241 (2,241/2,252)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, mito 9.5, mito_pero 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001585)
HIX0021337
HIT000263068
(
BC068511
)
(N-lysine methyltransferase SMYD2.)
genome : 214,454,435 - 214,510,472 (56,038)
query : 1 - 3,682 (3,682/3,699)
9 exons
identity = 0.997
5'(0.997;1.000;1.000;0.992;1.000;1.000;1.000;
0.998;0.991)3'
coverage = 0.999
EC number :
EC 2.1.1.43
KEGG pathway :
00310 : Lysine degradation (49)
InterPro :
IPR001214 : SET domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, cyto 12.5, cyto_nucl 8, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021337)
HIX0021337
HIT000099072
(
BC049367
)
(N-lysine methyltransferase SMYD2.)
genome : 214,454,445 - 214,510,474 (56,030)
query : 1 - 3,810 (3,810/3,845)
11 exons
identity = 0.998
5'(0.997;1.000;1.000;1.000;0.984;1.000;1.000;
1.000;1.000;0.999;1.000)3'
coverage = 1.000
EC number :
EC 2.1.1.43
KEGG pathway :
00310 : Lysine degradation (49)
InterPro :
IPR001214 : SET domain
IPR002893 : Zinc finger, MYND-type
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, cyto 7.5, extr_plas 7.5, cyto_nucl 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021337)
HIX0021337
HIT000594979 (
ENST00000491455
)
(SET domain containing protein.)
genome : 214,454,445 - 214,510,474 (56,030)
query : 1 - 3,809 (3,809/3,809)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto 8.5, cyto_nucl 6.5, mito 5, E.R. 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021337)
HIX0021337
HIT000335048
(
BC094747
)
(N-lysine methyltransferase SMYD2.)
genome : 214,454,468 - 214,510,472 (56,005)
query : 1 - 4,731 (4,731/4,747)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.999;1.000)3'
coverage = 1.000
EC number :
EC 2.1.1.43
KEGG pathway :
00310 : Lysine degradation (49)
InterPro :
IPR001214 : SET domain
IPR002893 : Zinc finger, MYND-type
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto 8, extr_plas 8, mito 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021337)
HIX0021337
HIT000576059 (
ENST00000471645
)
(SET domain containing protein.)
genome : 214,454,468 - 214,510,473 (56,006)
query : 1 - 4,732 (4,732/4,732)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto 8, extr_plas 8, mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021337)
HIX0021337
HIT000259731
(
BC057793
)
(N-lysine methyltransferase SMYD2.)
genome : 214,454,565 - 214,510,474 (55,910)
query : 1 - 1,616 (1,616/1,646)
11 exons
identity = 0.997
5'(1.000;1.000;0.984;1.000;1.000;1.000;1.000;
0.992;0.994;0.991;0.998)3'
coverage = 1.000
EC number :
EC 2.1.1.43
KEGG pathway :
00310 : Lysine degradation (49)
InterPro :
IPR001214 : SET domain
IPR011990 : Tetratricopeptide-like helical domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12, cyto_nucl 11, nucl 8, mito 7, extr 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021337)
HIX0021337
HIT000207795 (
NM_020197
)
(SET domain containing protein.)
genome : 214,454,565 - 214,510,477 (55,913)
query : 1 - 1,685 (1,685/1,689)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.998
EC number :
EC 2.1.1.43
KEGG pathway :
00310 : Lysine degradation (49)
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, cyto_nucl 9, cyto_mito 9, extr 5, mito 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021337)
HIX0021337
HIT000565503 (
ENST00000460580
)
(SET domain containing protein.)
genome : 214,454,565 - 214,510,474 (55,910)
query : 1 - 1,618 (1,618/1,618)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21, extr 5, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021337)
HIX0021337
HIT000002366
(
AF226053
)
(N-lysine methyltransferase SMYD2; EC=2.1.1.-; HSKM-B; Histone methyltransferase SMYD2; EC=2.1.1.43; Lysine N-methyltransferase 3C; SET and MYND domain-containing protein 2;)
genome : 214,454,576 - 214,510,474 (55,899)
query : 1 - 1,667 (1,667/1,694)
12 exons
identity = 0.997
5'(1.000;1.000;1.000;1.000;0.992;1.000;1.000;
1.000;1.000;1.000;1.000;0.991)3'
coverage = 1.000
EC number :
EC 2.1.1.43
KEGG pathway :
00310 : Lysine degradation (49)
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, cyto_nucl 9, cyto_mito 9, extr 5, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021337)
HIX0021337
HIT000348237 (
ENST00000366957
)
(SET domain containing protein.)
genome : 214,454,576 - 214,510,474 (55,899)
query : 1 - 1,671 (1,671/1,671)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, cyto_nucl 9, cyto_mito 9, extr 5, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021337)
HIX0021337
HIT000335778
(
BC098133
)
(N-lysine methyltransferase SMYD2; EC=2.1.1.-; HSKM-B; Histone methyltransferase SMYD2; EC=2.1.1.43; Lysine N-methyltransferase 3C; SET and MYND domain-containing protein 2;)
genome : 214,454,576 - 214,510,177 (55,602)
query : 1 - 1,374 (1,374/1,374)
12 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;0.992;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.1.1.43
KEGG pathway :
00310 : Lysine degradation (49)
InterPro :
IPR001214 : SET domain
IPR002893 : Zinc finger, MYND-type
IPR011990 : Tetratricopeptide-like helical domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, cyto_nucl 9, cyto_mito 9, extr 5, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021337)
HIX0021337
HIT000335853
(
BC098276
)
Representative transcript
(N-lysine methyltransferase SMYD2; EC=2.1.1.-; HSKM-B; Histone methyltransferase SMYD2; EC=2.1.1.43; Lysine N-methyltransferase 3C; SET and MYND domain-containing protein 2;)
genome : 214,454,576 - 214,510,177 (55,602)
query : 1 - 1,374 (1,374/1,374)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.1.1.43
KEGG pathway :
00310 : Lysine degradation (49)
InterPro :
IPR001214 : SET domain
IPR002893 : Zinc finger, MYND-type
IPR011990 : Tetratricopeptide-like helical domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, cyto_nucl 9, cyto_mito 9, extr 5, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021337)
HIX0021337
HIT000335882
(
BC098305
)
(N-lysine methyltransferase SMYD2.)
genome : 214,454,576 - 214,510,177 (55,602)
query : 1 - 1,078 (1,078/1,078)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.1.1.43
KEGG pathway :
00310 : Lysine degradation (49)
InterPro :
IPR001214 : SET domain
IPR002893 : Zinc finger, MYND-type
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, cyto 4, mito 4, cyto_nucl 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021337)
HIX0021337
HIT000335897
(
BC098335
)
(N-lysine methyltransferase SMYD2; EC=2.1.1.-; HSKM-B; Histone methyltransferase SMYD2; EC=2.1.1.43; Lysine N-methyltransferase 3C; SET and MYND domain-containing protein 2;)
genome : 214,454,576 - 214,510,177 (55,602)
query : 1 - 1,374 (1,374/1,374)
12 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;0.992;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.1.1.43
KEGG pathway :
00310 : Lysine degradation (49)
InterPro :
IPR001214 : SET domain
IPR002893 : Zinc finger, MYND-type
IPR011990 : Tetratricopeptide-like helical domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, cyto_nucl 9, cyto_mito 9, extr 5, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021337)
HIX0021337
HIT000513027 (
ENST00000415093
)
(SET domain containing protein.)
genome : 214,454,576 - 214,510,177 (55,602)
query : 1 - 1,078 (1,078/1,078)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, cyto 4, mito 4, cyto_nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021337)
HIX0021337
HIT000091489
(
BC028104
)
(N-lysine methyltransferase SMYD2.)
genome : 214,454,580 - 214,510,474 (55,895)
query : 1 - 1,603 (1,603/1,631)
11 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.998)3'
coverage = 1.000
EC number :
EC 2.1.1.43
KEGG pathway :
00310 : Lysine degradation (49)
InterPro :
IPR001214 : SET domain
IPR011990 : Tetratricopeptide-like helical domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18, cyto 8.5, cyto_nucl 6.5, nucl 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021337)
HIX0021337
HIT000432734
(
AK313868
)
(N-lysine methyltransferase SMYD2; EC=2.1.1.-; HSKM-B; Histone methyltransferase SMYD2; EC=2.1.1.43; Lysine N-methyltransferase 3C; SET and MYND domain-containing protein 2;)
genome : 214,454,595 - 214,510,127 (55,533)
query : 1 - 1,305 (1,305/1,305)
12 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;0.992;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.1.1.43
KEGG pathway :
00310 : Lysine degradation (49)
InterPro :
IPR001214 : SET domain
IPR002893 : Zinc finger, MYND-type
IPR011990 : Tetratricopeptide-like helical domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, cyto_nucl 9, cyto_mito 9, extr 5, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021337)
HIX0021337
HIT000095942
(
BC039890
)
(N-lysine methyltransferase SMYD2.)
genome : 214,454,600 - 214,510,474 (55,875)
query : 1 - 1,647 (1,647/1,709)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.1.1.43
KEGG pathway :
00310 : Lysine degradation (49)
InterPro :
IPR001214 : SET domain
IPR002893 : Zinc finger, MYND-type
IPR011990 : Tetratricopeptide-like helical domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 9, mito 5, extr 4, E.R._mito 4,
E.R. 3, mito_pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021337)
HIX0019529
HIT000005455
(
AK022181
)
Representative transcript
(Conserved hypothetical protein.)
genome : 214,472,914 - 214,475,112 (2,199)
query : 1 - 2,199 (2,199/2,199)
1 exon
identity = 0.994
3'(0.994)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 16, cyto_nucl 9.83333, cyto 8, E.R._mito 8,
nucl 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019529)
HIX0021337
HIT000023513
(
AK098683
)
(SET domain containing protein.)
genome : 214,492,276 - 214,510,473 (18,198)
query : 1 - 1,165 (1,165/1,165)
8 exons
identity = 0.999
5'(0.980;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
InterPro :
IPR001214 : SET domain
IPR011990 : Tetratricopeptide-like helical domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 11, extr 6, mito 3, extr_plas 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021337)
HIX0021337
HIT000588309 (
ENST00000484459
)
(SET domain containing protein.)
genome : 214,500,837 - 214,504,413 (3,577)
query : 1 - 463 (463/463)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, extr 10, cyto_nucl 8.5, mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021337)
HIX0021337
HIT000089181
(
BC017080
)
(N-lysine methyltransferase SMYD2.)
genome : 214,503,510 - 214,510,479 (6,970)
query : 1 - 950 (950/965)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.1.1.43
KEGG pathway :
00310 : Lysine degradation (49)
InterPro :
IPR011990 : Tetratricopeptide-like helical domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20.5, cyto_nucl 11.5, extr 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021337)
HIX0021337
HIT000514349 (
ENST00000416415
)
(Conserved hypothetical protein.)
genome : 214,504,320 - 214,510,474 (6,155)
query : 1 - 697 (697/697)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 26, cyto_nucl 17, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021337)
HIX0021337
HIT000016457
(
AK091590
)
(Tetratricopeptide-like helical domain containing protein.)
genome : 214,504,440 - 214,510,473 (6,034)
query : 1 - 3,639 (3,639/3,639)
2 exons
identity = 0.999
5'(0.999;1.000)3'
coverage = 1.000
InterPro :
IPR011990 : Tetratricopeptide-like helical domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 13.5, mito 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021337)
HIX0021337
HIT000015438
(
AK090571
)
(Conserved hypothetical protein.)
genome : 214,507,607 - 214,509,719 (2,113)
query : 1 - 2,115 (2,115/2,115)
1 exon
identity = 0.997
5'(0.997)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 13.5, mito 7, nucl 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021337)
HIX0021337
HIT000065759
(
AF070592
)
(Conserved hypothetical protein.)
genome : 214,510,240 - 214,512,116 (1,877)
query : 1 - 1,877 (1,877/1,894)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 22, mito 5, cyto_pero 2.5, nucl 2, cyto 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021337)
HIX0001588
HIT000541556 (
ENST00000443622
)
(Conserved hypothetical protein.)
genome : 214,517,515 - 214,530,958 (13,444)
query : 1 - 518 (518/518)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14, nucl 12.5, cyto 10.5, cysk 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001588)
HIX0001588
HIT000202096 (
NM_005401
)
(Tyrosine-protein phosphatase non-receptor type 14; EC=3.1.3.48; Protein-tyrosine phosphatase pez;)
genome : 214,522,039 - 214,725,024 (202,986)
query : 1 - 13,443 (13,443/13,443)
19 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17.5, nucl 11, cyto_mito 11
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001588)
HIX0001588
HIT000013577
(
AK056963
)
(Hypothetical short protein.)
genome : 214,522,047 - 214,523,147 (1,101)
query : 1 - 1,101 (1,101/1,101)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 11.5, cyto_nucl 10.5, cysk 9, extr 6, nucl 4.5,
cysk_plas 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001588)
HIX0001588
HIT000067396
(
AF086517
)
(Non-protein coding transcript.)
genome : 214,522,980 - 214,523,573 (594)
query : 1 - 594 (594/603)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001588)
HIX0001588
HIT000348236 (
ENST00000366956
)
(Tyrosine-protein phosphatase non-receptor type 14; EC=3.1.3.48; Protein-tyrosine phosphatase pez;)
genome : 214,530,851 - 214,724,566 (193,716)
query : 1 - 4,173 (4,173/4,173)
19 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17.5, nucl 11, cyto_mito 11
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001588)
HIX0001588
HIT000424438
(
AK291641
)
(Tyrosine-protein phosphatase non-receptor type 14; EC=3.1.3.48; Protein-tyrosine phosphatase pez;)
genome : 214,531,091 - 214,724,951 (193,861)
query : 6 - 4,323 (4,318/4,323)
19 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;0.999;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.997;1.000)5'
coverage = 0.999
EC number :
EC 3.1.3.48
InterPro :
IPR000242 : Protein-tyrosine phosphatase, receptor/non-receptor type
IPR000299 : FERM domain
IPR000387 : Protein-tyrosine/Dual specificity phosphatase
IPR014352 : FERM/acyl-CoA-binding protein, 3-helical bundle
IPR016130 : Protein-tyrosine phosphatase, active site
IPR018979 : FERM, N-terminal
IPR018980 : FERM, C-terminal PH-like domain
IPR019747 : FERM conserved site
IPR019748 : FERM central domain
IPR019749 : Band 4.1 domain
IPR029021 : Protein-tyrosine phosphatase-like
IPR029071 : Ubiquitin-related domain
GO :
0004725 : Molecular Function : protein tyrosine phosphatase activity
0005856 : Cellular Component : cytoskeleton
0006470 : Biological Process : protein dephosphorylation
0016311 : Biological Process : dephosphorylation
0016791 : Molecular Function : phosphatase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17.5, nucl 11, cyto_mito 11
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001588)
HIX0001588
HIT000323930
(
X82676
)
(FERM, N-terminal domain containing protein.)
genome : 214,531,094 - 214,724,566 (193,473)
query : 1 - 3,928 (3,928/3,928)
19 exons
identity = 0.999
3'(0.997;1.000;1.000;1.000;1.000;1.000;0.999;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.994;1.000)5'
coverage = 1.000
InterPro :
IPR000242 : Protein-tyrosine phosphatase, receptor/non-receptor type
IPR000299 : FERM domain
IPR000387 : Protein-tyrosine/Dual specificity phosphatase
IPR014352 : FERM/acyl-CoA-binding protein, 3-helical bundle
IPR016130 : Protein-tyrosine phosphatase, active site
IPR018979 : FERM, N-terminal
IPR018980 : FERM, C-terminal PH-like domain
IPR019747 : FERM conserved site
IPR019748 : FERM central domain
IPR019749 : Band 4.1 domain
IPR029021 : Protein-tyrosine phosphatase-like
IPR029071 : Ubiquitin-related domain
GO :
0004725 : Molecular Function : protein tyrosine phosphatase activity
0005856 : Cellular Component : cytoskeleton
0006470 : Biological Process : protein dephosphorylation
0016311 : Biological Process : dephosphorylation
0016791 : Molecular Function : phosphatase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17.5, nucl 11, cyto_mito 11
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001588)
HIX0001588
HIT000337104
(
BC101754
)
Representative transcript
(Tyrosine-protein phosphatase non-receptor type 14; EC=3.1.3.48; Protein-tyrosine phosphatase pez;)
genome : 214,531,244 - 214,638,206 (106,963)
query : 1 - 3,645 (3,645/3,645)
18 exons
identity = 0.999
3'(1.000;1.000;0.996;1.000;1.000;1.000;1.000;
1.000;0.983;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.996)5'
coverage = 1.000
EC number :
EC 3.1.3.48
InterPro :
IPR000242 : Protein-tyrosine phosphatase, receptor/non-receptor type
IPR000299 : FERM domain
IPR000387 : Protein-tyrosine/Dual specificity phosphatase
IPR014352 : FERM/acyl-CoA-binding protein, 3-helical bundle
IPR016130 : Protein-tyrosine phosphatase, active site
IPR018979 : FERM, N-terminal
IPR018980 : FERM, C-terminal PH-like domain
IPR019747 : FERM conserved site
IPR019748 : FERM central domain
IPR019749 : Band 4.1 domain
IPR029021 : Protein-tyrosine phosphatase-like
IPR029071 : Ubiquitin-related domain
GO :
0004725 : Molecular Function : protein tyrosine phosphatase activity
0005856 : Cellular Component : cytoskeleton
0006470 : Biological Process : protein dephosphorylation
0016311 : Biological Process : dephosphorylation
0016791 : Molecular Function : phosphatase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17.5, nucl 11, cyto_mito 11
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001588)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK156480
Bos
sp. (Cow) : ENSBTAT00000028717
Canis
sp. (Dog) : ENSCAFT00000019934
Oryzias
sp. (Medaka) : ENSORLT00000018694
Pongo
sp. (Orangutan) : ENSPPYT00000000244
Rattus
sp. (Rat) : ENSRNOT00000004751
Tetraodon
sp. (Tetraodon) : GSTENT00030370001
Takifugu
sp. (Fugu) : SINFRUT00000144681
Macaca
sp. (Macaque) : XM_001106232
Pan
sp. (Chimpanzee) : XM_001171349
Gallus
sp. (Chicken) : XM_001233468
Monodelphis
sp. (Opossum) : XM_001367106
Equus
sp. (Horse) : XM_001488273
HIX0001588
HIT000337891
(
BC104803
)
(Tyrosine-protein phosphatase non-receptor type 14; EC=3.1.3.48; Protein-tyrosine phosphatase pez;)
genome : 214,531,244 - 214,638,206 (106,963)
query : 1 - 3,645 (3,645/3,645)
18 exons
identity = 0.999
3'(1.000;1.000;0.996;1.000;1.000;1.000;1.000;
1.000;0.983;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.996)5'
coverage = 1.000
EC number :
EC 3.1.3.48
InterPro :
IPR000242 : Protein-tyrosine phosphatase, receptor/non-receptor type
IPR000299 : FERM domain
IPR000387 : Protein-tyrosine/Dual specificity phosphatase
IPR014352 : FERM/acyl-CoA-binding protein, 3-helical bundle
IPR016130 : Protein-tyrosine phosphatase, active site
IPR018979 : FERM, N-terminal
IPR018980 : FERM, C-terminal PH-like domain
IPR019747 : FERM conserved site
IPR019748 : FERM central domain
IPR019749 : Band 4.1 domain
IPR029021 : Protein-tyrosine phosphatase-like
IPR029071 : Ubiquitin-related domain
GO :
0004725 : Molecular Function : protein tyrosine phosphatase activity
0005856 : Cellular Component : cytoskeleton
0006470 : Biological Process : protein dephosphorylation
0016311 : Biological Process : dephosphorylation
0016791 : Molecular Function : phosphatase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17.5, nucl 11, cyto_mito 11
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001588)
HIX0001588
HIT000642990 (
ENST00000543945
)
(Tyrosine-protein phosphatase non-receptor type 14; EC=3.1.3.48; Protein-tyrosine phosphatase pez;)
genome : 214,531,268 - 214,638,146 (106,879)
query : 1 - 3,473 (3,473/3,473)
17 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 28.5, cyto_mito 15.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001588)
HIX0001588
HIT000652905
(
HQ116786
)
(Tyrosine-protein phosphatase non-receptor type 14; EC=3.1.3.48; Protein-tyrosine phosphatase pez;)
genome : 214,531,268 - 214,638,146 (106,879)
query : 1 - 3,473 (3,473/3,473)
17 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;0.999;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.1.3.48
InterPro :
IPR000299 : FERM domain
IPR014352 : FERM/acyl-CoA-binding protein, 3-helical bundle
IPR018979 : FERM, N-terminal
IPR019747 : FERM conserved site
IPR019748 : FERM central domain
IPR019749 : Band 4.1 domain
IPR029071 : Ubiquitin-related domain
GO :
0005856 : Cellular Component : cytoskeleton
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 28.5, cyto_mito 15.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001588)
HIX0001588
HIT000577601 (
ENST00000473261
)
(Tyrosine-protein phosphatase non-receptor type 14; EC=3.1.3.48; Protein-tyrosine phosphatase pez;)
genome : 214,545,589 - 214,549,749 (4,161)
query : 1 - 442 (442/442)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 19, cyto 9.5, E.R._mito 9.5, mito_pero 9.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001588)
HIX0001588
HIT000492744
(
AK298120
)
(Tyrosine-protein phosphatase non-receptor type 14; EC=3.1.3.48; Protein-tyrosine phosphatase pez;)
genome : 214,551,297 - 214,724,944 (173,648)
query : 2 - 2,939 (2,938/2,949)
13 exons
identity = 0.999
3'(0.987;0.999;1.000;0.983;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.996
EC number :
EC 3.1.3.48
InterPro :
IPR000299 : FERM domain
IPR014352 : FERM/acyl-CoA-binding protein, 3-helical bundle
IPR018979 : FERM, N-terminal
IPR018980 : FERM, C-terminal PH-like domain
IPR019747 : FERM conserved site
IPR019748 : FERM central domain
IPR019749 : Band 4.1 domain
IPR029071 : Ubiquitin-related domain
GO :
0005856 : Cellular Component : cytoskeleton
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 15.3333, cyto 14,
cyto_pero 7.83333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001588)
HIX0001588
HIT000089240
(
BC017300
)
(Tyrosine-protein phosphatase non-receptor type 14; EC=3.1.3.48; Protein-tyrosine phosphatase pez;)
genome : 214,557,766 - 214,724,595 (166,830)
query : 1 - 1,657 (1,657/1,718)
13 exons
identity = 0.998
3'(0.995;1.000;0.983;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.997;1.000)5'
coverage = 0.993
EC number :
EC 3.1.3.48
InterPro :
IPR000299 : FERM domain
IPR014352 : FERM/acyl-CoA-binding protein, 3-helical bundle
IPR018979 : FERM, N-terminal
IPR018980 : FERM, C-terminal PH-like domain
IPR019747 : FERM conserved site
IPR019748 : FERM central domain
IPR019749 : Band 4.1 domain
IPR029071 : Ubiquitin-related domain
GO :
0005856 : Cellular Component : cytoskeleton
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, nucl 13.5, cyto_nucl 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001588)
HIX0021623
HIT000005595
(
AK022321
)
Representative transcript
(Conserved hypothetical protein.)
genome : 214,572,128 - 214,573,982 (1,855)
query : 1 - 1,859 (1,859/1,859)
1 exon
identity = 0.997
5'(0.997)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, nucl 9, cyto_nucl 6.83333, mito 4, cyto 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021623)
HIX0001588
HIT000589943 (
ENST00000486173
)
(Conserved hypothetical protein.)
genome : 214,638,045 - 214,725,792 (87,748)
query : 1 - 487 (487/487)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001588)
HIX0200096
HIT000503438
(
BC157883
)
(AP-3 complex subunit sigma-1.)
genome : 214,655,882 - 214,656,819 (938)
query : 1 - 938 (938/938)
1 exon
identity = 0.996
3'(0.996)5'
coverage = 1.000
InterPro :
IPR000804 : Clathrin adaptor complex, small chain
IPR011012 : Longin-like domain
IPR016635 : Adaptor protein complex, sigma subunit
IPR022775 : AP complex, mu/sigma subunit
GO :
0006810 : Biological Process : transport
0006886 : Biological Process : intracellular protein transport
0008565 : Molecular Function : protein transporter activity
0015031 : Biological Process : protein transport
0016192 : Biological Process : vesicle-mediated transport
0030117 : Cellular Component : membrane coat
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, mito 10, cyto_nucl 10, nucl 1.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200096)
HIX0200096
HIT000503627
(
BC171896
)
Representative transcript
(AP-3 complex subunit sigma-1.)
genome : 214,655,882 - 214,656,819 (938)
query : 1 - 939 (939/939)
1 exon
identity = 0.997
3'(0.997)5'
coverage = 1.000
InterPro :
IPR000804 : Clathrin adaptor complex, small chain
IPR011012 : Longin-like domain
IPR016635 : Adaptor protein complex, sigma subunit
IPR022775 : AP complex, mu/sigma subunit
GO :
0006810 : Biological Process : transport
0006886 : Biological Process : intracellular protein transport
0008565 : Molecular Function : protein transporter activity
0015031 : Biological Process : protein transport
0016192 : Biological Process : vesicle-mediated transport
0030117 : Cellular Component : membrane coat
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, mito 10, cyto_nucl 10, nucl 1.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200096)
Ortholog candidate ( ->
Evola
)
Danio
sp. (Zebrafish) : BC076269
Tetraodon
sp. (Tetraodon) : CR699410
Oryzias
sp. (Medaka) : ENSORLT00000004240
Macaca
sp. (Macaque) : XM_001086177
Pan
sp. (Chimpanzee) : XM_001170969
Bos
sp. (Cow) : XM_001249318
Mus
sp. (Mouse) : XM_486145
HIX0200096
HIT000530511 (
ENST00000432577
)
(AP-3 complex subunit sigma-1.)
genome : 214,656,156 - 214,656,730 (575)
query : 1 - 575 (575/575)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, mito 12, cyto_nucl 8.5, nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200096)
HIX0001588
HIT000055088
(
BX538306
)
(Conserved hypothetical protein.)
genome : 214,701,619 - 214,724,945 (23,327)
query : 2 - 5,553 (5,552/5,573)
2 exons
identity = 0.994
3'(0.994;0.998)5'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14, extr 10, cyto 5, cyto_nucl 5, extr_plas 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001588)
HIX0001588
HIT000594805 (
ENST00000491277
)
(Keratin, type I cytoskeletal 18; Cell proliferation-inducing gene 46 protein; Cytokeratin-18; CK-18; Keratin-18; K18;)
genome : 214,701,619 - 214,724,945 (23,327)
query : 1 - 5,552 (5,552/5,552)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, nucl 3, cyto_pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001588)
HIX0001588
HIT000015463
(
AK090596
)
(Conserved hypothetical protein.)
genome : 214,703,701 - 214,724,642 (20,942)
query : 1 - 3,167 (3,167/3,168)
2 exons
identity = 0.998
3'(0.998;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, cyto_nucl 6.5, nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001588)
HIX0077493
HIT000523179 (
ENST00000425245
)
(Intermediate filament protein family protein.)
genome : 214,705,538 - 214,706,810 (1,273)
query : 1 - 1,273 (1,273/1,273)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 28, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0077493)
HIX0028827
HIT000206068 (
NM_016343
)
(Centromere protein F.)
genome : 214,776,532 - 214,837,913 (61,382)
query : 1 - 10,295 (10,295/10,316)
20 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 15.5, cyto 9.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028827)
HIX0028827
HIT000218527
(
U19769
)
(Centromere protein F; CENP-F; AH antigen; Kinetochore protein CENPF; Mitosin; Precursor;)
genome : 214,776,538 - 214,837,430 (60,893)
query : 3 - 10,096 (10,094/10,096)
20 exons
identity = 0.963
5'(1.000;0.985;1.000;1.000;1.000;0.993;1.000;
1.000;1.000;1.000;1.000;0.903;0.999;1.000;
1.000;1.000;1.000;0.998;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR018302 : Kinetochore protein Cenp-F/LEK1, Rb protein-binding domain
IPR018463 : Centromere protein Cenp-F, N-terminal
IPR019513 : Centromere protein Cenp-F, leucine-rich repeat-containing domain
GO :
0008134 : Molecular Function : transcription factor binding
0042803 : Molecular Function : protein homodimerization activity
0045502 : Molecular Function : dynein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19.5, cyto_nucl 15.3333, cyto 10,
cyto_golg 6.83333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028827)
HIX0028827
HIT000348235 (
ENST00000366955
)
(Centromere protein F.)
genome : 214,776,538 - 214,837,931 (61,394)
query : 1 - 10,307 (10,307/10,307)
20 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 15.5, cyto 9.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028827)
HIX0028827
HIT000569076 (
ENST00000464322
)
(Centromere protein F; CENP-F; AH antigen; Kinetochore protein CENPF; Mitosin; Precursor;)
genome : 214,776,538 - 214,788,533 (11,996)
query : 1 - 689 (689/689)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, nucl 7, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028827)
HIX0028827
HIT000426556
(
AK307690
)
(Centromere protein F; CENP-F; AH antigen; Kinetochore protein CENPF; Mitosin; Precursor;)
genome : 214,776,549 - 214,813,492 (36,944)
query : 1 - 1,968 (1,968/1,968)
12 exons
identity = 0.999
5'(1.000;0.995;0.995;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR018463 : Centromere protein Cenp-F, N-terminal
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, cyto_nucl 14.6667, cyto_golg 11.1667,
nucl 11
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028827)
HIX0028827
HIT000219109
(
U30872
)
Representative transcript
(Centromere protein F; CENP-F; AH antigen; Kinetochore protein CENPF; Mitosin; Precursor;)
genome : 214,776,634 - 214,837,913 (61,280)
query : 1 - 10,190 (10,190/10,211)
20 exons
identity = 0.999
5'(1.000;0.985;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.999;1.000;1.000;
1.000;1.000;1.000;0.998;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR018302 : Kinetochore protein Cenp-F/LEK1, Rb protein-binding domain
IPR018463 : Centromere protein Cenp-F, N-terminal
IPR019513 : Centromere protein Cenp-F, leucine-rich repeat-containing domain
GO :
0008134 : Molecular Function : transcription factor binding
0042803 : Molecular Function : protein homodimerization activity
0045502 : Molecular Function : dynein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 15.5, cyto 9.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028827)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : DQ642022
Canis
sp. (Dog) : ENSCAFT00000020009
Danio
sp. (Zebrafish) : ENSDART00000087589
Macaca
sp. (Macaque) : ENSMMUT00000021938
Monodelphis
sp. (Opossum) : ENSMODT00000004109
Pongo
sp. (Orangutan) : ENSPPYT00000000243
Gallus
sp. (Chicken) : U62026
Pan
sp. (Chimpanzee) : XM_001171564
Equus
sp. (Horse) : XM_001488231
HIX0028827
HIT000598628 (
ENST00000495259
)
(Centromere protein F; CENP-F; AH antigen; Kinetochore protein CENPF; Mitosin; Precursor;)
genome : 214,776,827 - 214,787,236 (10,410)
query : 1 - 345 (345/345)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 12.5, extr 7, nucl 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028827)
HIX0028829
HIT000603406_01 (
ENST00000503096
)
(Alpha/beta hydrolase fold-5 domain containing protein.)
genome : 214,778,813 - 214,782,183 (3,371)
query : 1 - 1,137 (1,137/1,137)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, nucl 9, cyto_pero 4.5, mito_nucl 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028829)
HIX0160948
HIT000534917 (
ENST00000436983
)
(Ubiquitin-conjugating enzyme E2 domain containing protein.)
genome : 214,786,303 - 214,786,741 (439)
query : 1 - 439 (439/439)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 11, cyto_nucl 8, cyto 7.5, extr 7, nucl 5.5,
E.R._mito 5.5, mito_pero 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0160948)
HIX0028827
HIT000218771
(
U25725
)
(Centromere protein F; CENP-F; AH antigen; Kinetochore protein CENPF; Mitosin; Precursor;)
genome : 214,819,204 - 214,837,309 (18,106)
query : 2 - 3,228 (3,227/3,229)
8 exons
identity = 0.998
5'(0.996;1.000;1.000;1.000;1.000;0.998;1.000;
0.997)3'
coverage = 0.999
InterPro :
IPR018302 : Kinetochore protein Cenp-F/LEK1, Rb protein-binding domain
IPR019513 : Centromere protein Cenp-F, leucine-rich repeat-containing domain
GO :
0008134 : Molecular Function : transcription factor binding
0042803 : Molecular Function : protein homodimerization activity
0045502 : Molecular Function : dynein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22.5, cyto_nucl 18.3333, cyto 9,
cyto_golg 5.66667
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028827)
HIX0028827
HIT000572365 (
ENST00000467765
)
(Centromere protein F; CENP-F; AH antigen; Kinetochore protein CENPF; Mitosin; Precursor;)
genome : 214,822,018 - 214,827,752 (5,735)
query : 1 - 1,417 (1,417/1,427)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 22, cyto_nucl 15.5, nucl 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028827)
HIX0028827
HIT000574361 (
ENST00000469862
)
(Centromere protein F; CENP-F; AH antigen; Kinetochore protein CENPF; Mitosin; Precursor;)
genome : 214,828,491 - 214,830,753 (2,263)
query : 1 - 734 (734/734)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 14.5, cyto 10.5, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028827)
HIX0178058
HIT000125707 (
ENST00000328713
)
(Glyceraldehyde/Erythrose phosphate dehydrogenase family protein.)
genome : 215,044,077 - 215,045,059 (983)
query : 1 - 983 (983/983)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, nucl 5, mito 5, mito_nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0178058)
HIX0178058
pHIT000003399 ( pHIT000003399 )
(Conserved hypothetical protein.)
genome : 215,044,077 - 215,044,316 (240)
query : 1 - 240 (240/240)
1 exon
InterPro :
IPR016040 : NAD(P)-binding domain
IPR020828 : Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain
IPR020831 : Glyceraldehyde/Erythrose phosphate dehydrogenase family
GO :
0016620 : Molecular Function : oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
0055114 : Biological Process : oxidation-reduction process
SOSUI :
SOLUBLE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0178058)
CAGE tag :
H27BD13G0208
HIX0178058
pHIT000098970 ( pHIT000098970 )
Representative transcript
(Conserved hypothetical protein.)
genome : 215,044,749 - 215,128,901 (84,153)
query : 1 - 627 (627/627)
2 exons
InterPro :
IPR020829 : Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain
IPR020831 : Glyceraldehyde/Erythrose phosphate dehydrogenase family
GO :
0016620 : Molecular Function : oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
0055114 : Biological Process : oxidation-reduction process
SOSUI :
SOLUBLE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0178058)
CAGE tag :
T01F0CB3CEE9
HIX0178058
pHIT000003400 ( pHIT000003400 )
(Conserved hypothetical protein.)
genome : 215,044,749 - 215,045,246 (498)
query : 1 - 498 (498/498)
1 exon
InterPro :
IPR020829 : Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain
IPR020831 : Glyceraldehyde/Erythrose phosphate dehydrogenase family
GO :
0016620 : Molecular Function : oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
0055114 : Biological Process : oxidation-reduction process
SOSUI :
SOLUBLE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0178058)
CAGE tag :
H27BD13G0208
HIX0161506
HIT000554020 (
ENST00000456086
)
(Conserved hypothetical protein.)
genome : 215,116,466 - 215,116,883 (418)
query : 1 - 418 (418/418)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, cyto 4, mito 3, cyto_nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0161506)
HIX0203459
eHIT000010880 ( ESTsASS_1_886 )
Representative transcript
(Non-protein coding transcript.)
genome : 215,157,275 - 215,176,197 (18,923)
query : 1 - 549 (549/549)
4 exons
ESTs assembly
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0203459)
ESTs used for assembly :
DA597529
HIX0023522
HIT000365493 (
NM_001017424
)
(Potassium channel subfamily K member 2 isoform a.)
genome : 215,178,885 - 215,410,436 (231,552)
query : 1 - 3,597 (3,597/3,597)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023522)
HIX0023522
HIT000590648 (
ENST00000486921
)
(Potassium channel subfamily K member 2 isoform a.)
genome : 215,179,118 - 215,409,584 (230,467)
query : 1 - 1,883 (1,883/1,883)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 10.5, cyto_nucl 8.5, plas 6, nucl 5.5, pero 5,
mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023522)
HIX0023522
HIT000331918
(
AY552981
)
(Potassium channel subfamily K member 2 isoform a.)
genome : 215,179,193 - 215,408,534 (229,342)
query : 1 - 1,200 (1,200/1,200)
6 exons
identity = 0.998
5'(1.000;0.997;1.000;1.000;0.986;1.000)3'
coverage = 1.000
InterPro :
IPR003976 : Two pore domain potassium channel, TREK
IPR013099 : Two pore domain potassium channel domain
GO :
0005267 : Molecular Function : potassium channel activity
0016020 : Cellular Component : membrane
0071805 : Biological Process : potassium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023522)
HIX0023522
HIT000571653 (
ENST00000467031
)
(Potassium channel subfamily K member 2 isoform a.)
genome : 215,179,193 - 215,408,534 (229,342)
query : 1 - 1,200 (1,200/1,200)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023522)
HIX0023522
HIT000043282
(
AK123409
)
(Potassium channel subfamily K member 2 isoform a.)
genome : 215,179,196 - 215,410,432 (231,237)
query : 1 - 2,496 (2,496/2,496)
7 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;0.999;0.997)3'
coverage = 1.000
InterPro :
IPR003976 : Two pore domain potassium channel, TREK
GO :
0005267 : Molecular Function : potassium channel activity
0016020 : Cellular Component : membrane
0071805 : Biological Process : potassium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 10.5, cyto_nucl 8.5, plas 6, nucl 5.5, pero 5,
mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023522)
HIX0023522
HIT000331917
(
AY552980
)
(Potassium channel subfamily K member 2 isoform a.)
genome : 215,179,198 - 215,408,562 (229,365)
query : 1 - 1,410 (1,410/1,410)
7 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;0.993;1.000)3'
coverage = 1.000
InterPro :
IPR003280 : Two pore domain potassium channel
IPR003976 : Two pore domain potassium channel, TREK
IPR013099 : Two pore domain potassium channel domain
GO :
0005267 : Molecular Function : potassium channel activity
0016020 : Cellular Component : membrane
0071805 : Biological Process : potassium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023522)
HIX0023522
HIT000475393 (
ENST00000391895
)
(Potassium channel subfamily K member 2 isoform a.)
genome : 215,179,198 - 215,408,562 (229,365)
query : 1 - 1,410 (1,410/1,410)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023522)
HIX0023522
HIT000582868 (
ENST00000478774
)
(Potassium channel subfamily K member 2; Outward rectifying potassium channel protein TREK-1; TREK-1 K(+) channel subunit; Two pore domain potassium channel TREK-1; Two pore potassium channel TPKC1;)
genome : 215,255,136 - 215,342,588 (87,453)
query : 1 - 566 (566/566)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023522)
HIX0023522
HIT000434115
(
AK315249
)
Representative transcript
(Potassium channel subfamily K member 2 isoform b.)
genome : 215,256,099 - 215,408,488 (152,390)
query : 1 - 1,416 (1,416/1,416)
8 exons
identity = 0.999
5'(1.000;0.991;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
InterPro :
IPR003280 : Two pore domain potassium channel
IPR003976 : Two pore domain potassium channel, TREK
IPR013099 : Two pore domain potassium channel domain
GO :
0005267 : Molecular Function : potassium channel activity
0016020 : Cellular Component : membrane
0071805 : Biological Process : potassium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 28, E.R. 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023522)
Ortholog candidate ( ->
Evola
)
Bos
sp. (Cow) : AY148474
Danio
sp. (Zebrafish) : BC109398
Rattus
sp. (Rat) : DQ403851
Oryzias
sp. (Medaka) : ENSORLT00000013823
Oryzias
sp. (Medaka) : ENSORLT00000021678
Pongo
sp. (Orangutan) : ENSPPYT00000000242
Tetraodon
sp. (Tetraodon) : GSTENT00030357001
Tetraodon
sp. (Tetraodon) : GSTENT00032815001
Takifugu
sp. (Fugu) : SINFRUT00000149919
Takifugu
sp. (Fugu) : SINFRUT00000168014
Mus
sp. (Mouse) : U73488
Pan
sp. (Chimpanzee) : XM_001171610
Monodelphis
sp. (Opossum) : XM_001375012
Equus
sp. (Horse) : XM_001488153
Danio
sp. (Zebrafish) : XM_683094
Canis
sp. (Dog) : XM_844185
Macaca
sp. (Macaque) : XR_013226
HIX0023522
HIT000475392 (
ENST00000391894
)
(Potassium channel subfamily K member 2 isoform b.)
genome : 215,256,467 - 215,408,560 (152,094)
query : 1 - 1,491 (1,491/1,491)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023522)
HIX0023522
HIT000204608 (
NM_014217
)
(Potassium channel subfamily K member 2 isoform b.)
genome : 215,256,560 - 215,410,436 (153,877)
query : 1 - 3,274 (3,274/3,274)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023522)
HIX0023522
HIT000365494 (
NM_001017425
)
(Potassium channel subfamily K member 2; Outward rectifying potassium channel protein TREK-1; TREK-1 K(+) channel subunit; Two pore domain potassium channel TREK-1; Two pore potassium channel TPKC1;)
genome : 215,256,560 - 215,410,436 (153,877)
query : 1 - 3,398 (3,398/3,398)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023522)
HIX0023522
HIT000061757
(
AF004711
)
(Potassium channel subfamily K member 2; Outward rectifying potassium channel protein TREK-1; TREK-1 K(+) channel subunit; Two pore domain potassium channel TREK-1; Two pore potassium channel TPKC1;)
genome : 215,256,600 - 215,409,161 (152,562)
query : 25 - 2,105 (2,081/2,106)
7 exons
identity = 0.988
5'(1.000;0.997;1.000;1.000;1.000;0.979;0.980)3'
coverage = 0.988
InterPro :
IPR003280 : Two pore domain potassium channel
IPR003976 : Two pore domain potassium channel, TREK
IPR013099 : Two pore domain potassium channel domain
GO :
0005267 : Molecular Function : potassium channel activity
0016020 : Cellular Component : membrane
0071805 : Biological Process : potassium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023522)
HIX0023522
HIT000579049 (
ENST00000474771
)
(Potassium channel subfamily K member 2 isoform b.)
genome : 215,256,578 - 215,408,497 (151,920)
query : 1 - 1,130 (1,130/1,130)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023522)
HIX0023522
HIT000489404
(
AK294780
)
(Potassium channel subfamily K member 2; Outward rectifying potassium channel protein TREK-1; TREK-1 K(+) channel subunit; Two pore domain potassium channel TREK-1; Two pore potassium channel TPKC1;)
genome : 215,256,578 - 215,368,400 (111,823)
query : 1 - 961 (961/961)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR003976 : Two pore domain potassium channel, TREK
GO :
0005267 : Molecular Function : potassium channel activity
0016020 : Cellular Component : membrane
0071805 : Biological Process : potassium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 14, plas 5, pero 5, nucl 4, mito 4, mito_nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023522)
HIX0023522
HIT000574664 (
ENST00000470177
)
(Potassium channel subfamily K member 2; Outward rectifying potassium channel protein TREK-1; TREK-1 K(+) channel subunit; Two pore domain potassium channel TREK-1; Two pore potassium channel TPKC1;)
genome : 215,256,578 - 215,368,400 (111,823)
query : 1 - 961 (961/961)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 14, plas 5, pero 5, nucl 4, mito 4, mito_nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023522)
HIX0023522
HIT000542776 (
ENST00000444842
)
(Potassium channel subfamily K member 2; Outward rectifying potassium channel protein TREK-1; TREK-1 K(+) channel subunit; Two pore domain potassium channel TREK-1; Two pore potassium channel TPKC1;)
genome : 215,256,579 - 215,410,436 (153,858)
query : 1 - 3,379 (3,379/3,379)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023522)
HIX0023522
HIT000424280
(
AK291483
)
(Potassium channel subfamily K member 2; Outward rectifying potassium channel protein TREK-1; TREK-1 K(+) channel subunit; Two pore domain potassium channel TREK-1; Two pore potassium channel TPKC1;)
genome : 215,256,579 - 215,409,021 (152,443)
query : 1 - 1,964 (1,964/1,964)
7 exons
identity = 0.999
5'(0.995;1.000;1.000;1.000;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR003280 : Two pore domain potassium channel
IPR003976 : Two pore domain potassium channel, TREK
IPR013099 : Two pore domain potassium channel domain
GO :
0005267 : Molecular Function : potassium channel activity
0016020 : Cellular Component : membrane
0071805 : Biological Process : potassium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023522)
HIX0023522
HIT000502036
(
BC143586
)
(Potassium channel subfamily K member 2 isoform b.)
genome : 215,256,590 - 215,408,560 (151,971)
query : 1 - 1,368 (1,368/1,368)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR003280 : Two pore domain potassium channel
IPR003976 : Two pore domain potassium channel, TREK
IPR013099 : Two pore domain potassium channel domain
GO :
0005267 : Molecular Function : potassium channel activity
0016020 : Cellular Component : membrane
0071805 : Biological Process : potassium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023522)
HIX0023522
HIT000337046
(
BC101693
)
(Potassium channel subfamily K member 2 isoform b.)
genome : 215,256,591 - 215,408,564 (151,974)
query : 1 - 1,371 (1,371/1,371)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR003280 : Two pore domain potassium channel
IPR003976 : Two pore domain potassium channel, TREK
IPR013099 : Two pore domain potassium channel domain
GO :
0005267 : Molecular Function : potassium channel activity
0016020 : Cellular Component : membrane
0071805 : Biological Process : potassium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023522)
HIX0023522
HIT000337048
(
BC101695
)
(Potassium channel subfamily K member 2 isoform b.)
genome : 215,256,591 - 215,408,564 (151,974)
query : 1 - 1,371 (1,371/1,371)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR003280 : Two pore domain potassium channel
IPR003976 : Two pore domain potassium channel, TREK
IPR013099 : Two pore domain potassium channel domain
GO :
0005267 : Molecular Function : potassium channel activity
0016020 : Cellular Component : membrane
0071805 : Biological Process : potassium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023522)
HIX0023522
HIT000395058
(
EF165334
)
(Potassium channel subfamily K member 2; Outward rectifying potassium channel protein TREK-1; TREK-1 K(+) channel subunit; Two pore domain potassium channel TREK-1; Two pore potassium channel TPKC1;)
genome : 215,256,627 - 215,408,691 (152,065)
query : 1 - 1,586 (1,586/1,586)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR003280 : Two pore domain potassium channel
IPR003976 : Two pore domain potassium channel, TREK
IPR013099 : Two pore domain potassium channel domain
GO :
0005267 : Molecular Function : potassium channel activity
0016020 : Cellular Component : membrane
0071805 : Biological Process : potassium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023522)
HIX0023522
HIT000395059
(
EF165335
)
(Potassium channel subfamily K member 2; Outward rectifying potassium channel protein TREK-1; TREK-1 K(+) channel subunit; Two pore domain potassium channel TREK-1; Two pore potassium channel TPKC1;)
genome : 215,256,662 - 215,408,563 (151,902)
query : 1 - 1,423 (1,423/1,423)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR003280 : Two pore domain potassium channel
IPR003976 : Two pore domain potassium channel, TREK
IPR013099 : Two pore domain potassium channel domain
GO :
0005267 : Molecular Function : potassium channel activity
0016020 : Cellular Component : membrane
0071805 : Biological Process : potassium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023522)
HIX0023522
HIT000555056 (
ENST00000457122
)
(Potassium channel subfamily K member 2 isoform b.)
genome : 215,256,860 - 215,342,608 (85,749)
query : 1 - 644 (644/644)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023522)
HIX0023522
HIT000263613
(
BC069462
)
(Potassium channel subfamily K member 2 isoform b.)
genome : 215,259,711 - 215,408,710 (149,000)
query : 16 - 1,472 (1,457/1,472)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.990
InterPro :
IPR003280 : Two pore domain potassium channel
IPR003976 : Two pore domain potassium channel, TREK
IPR013099 : Two pore domain potassium channel domain
GO :
0005267 : Molecular Function : potassium channel activity
0016020 : Cellular Component : membrane
0071805 : Biological Process : potassium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023522)
HIX0023522
HIT000072391
(
AF171068
)
(Potassium channel subfamily K member 2 isoform b.)
genome : 215,259,711 - 215,408,490 (148,780)
query : 16 - 1,252 (1,237/1,252)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.988
InterPro :
IPR003280 : Two pore domain potassium channel
IPR003976 : Two pore domain potassium channel, TREK
IPR013099 : Two pore domain potassium channel domain
GO :
0005267 : Molecular Function : potassium channel activity
0016020 : Cellular Component : membrane
0071805 : Biological Process : potassium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023522)
HIX0023522
HIT000070611
(
AF129399
)
(Potassium channel subfamily K member 2 isoform b.)
genome : 215,259,711 - 215,408,488 (148,778)
query : 2 - 1,236 (1,235/1,236)
6 exons
identity = 0.998
5'(0.997;1.000;1.000;1.000;1.000;0.997)3'
coverage = 0.999
InterPro :
IPR003280 : Two pore domain potassium channel
IPR003976 : Two pore domain potassium channel, TREK
IPR013099 : Two pore domain potassium channel domain
GO :
0005267 : Molecular Function : potassium channel activity
0016020 : Cellular Component : membrane
0071805 : Biological Process : potassium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023522)
HIX0203631
HIT000455367_13
(
DQ588836
)
Representative transcript
(Non-protein coding transcript.)
genome : 215,539,098 - 215,539,127 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0203631)
HIX0160373
HIT000514649 (
ENST00000416715
)
(Eukaryotic porin/Tom40 family protein.)
genome : 215,549,827 - 215,550,717 (891)
query : 1 - 891 (891/891)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21, cyto_nucl 15, extr 6, nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0160373)
HIX0001589
HIT000205885 (
NM_016121
)
(BTB/POZ domain-containing protein KCTD3; Renal carcinoma antigen NY-REN-45;)
genome : 215,740,735 - 215,795,148 (54,414)
query : 1 - 3,930 (3,930/3,946)
18 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
E.R. 7.5, E.R._mito 7, cyto 6, mito_pero 5.5,
cyto_pero 5.5, nucl 5, plas 4.5, pero 4.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001589)
HIX0001589
HIT000107435 (
ENST00000259154
)
(BTB/POZ domain-containing protein KCTD3; Renal carcinoma antigen NY-REN-45;)
genome : 215,740,735 - 215,795,149 (54,415)
query : 1 - 3,931 (3,931/3,931)
18 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
E.R. 7.5, E.R._mito 7, cyto 6, mito_pero 5.5,
cyto_pero 5.5, nucl 5, plas 4.5, pero 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001589)
HIX0001589
HIT000088214
(
BC013868
)
(BTB/POZ domain-containing protein KCTD3.)
genome : 215,740,735 - 215,793,660 (52,926)
query : 1 - 2,442 (2,442/2,502)
18 exons
identity = 1.000
5'(0.997;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000210 : BTB/POZ-like
IPR001680 : WD40 repeat
IPR003131 : Potassium channel tetramerisation-type BTB domain
IPR011333 : BTB/POZ fold
IPR017986 : WD40-repeat-containing domain
IPR019775 : WD40 repeat, conserved site
GO :
0005515 : Molecular Function : protein binding
0051260 : Biological Process : protein homooligomerization
SOSUI :
SOLUBLE PROTEIN
PSORT :
E.R. 10.5, E.R._mito 8.5, nucl 5, plas 4.5,
cyto_nucl 4.5, mito_pero 4.5, cyto 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001589)
HIX0001589
HIT000335180
(
BC094879
)
(BTB/POZ domain-containing protein KCTD3; Renal carcinoma antigen NY-REN-45;)
genome : 215,740,773 - 215,795,148 (54,376)
query : 1 - 3,886 (3,886/3,908)
18 exons
identity = 0.999
5'(0.997;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR000210 : BTB/POZ-like
IPR001680 : WD40 repeat
IPR003131 : Potassium channel tetramerisation-type BTB domain
IPR011333 : BTB/POZ fold
IPR017986 : WD40-repeat-containing domain
IPR019775 : WD40 repeat, conserved site
GO :
0005515 : Molecular Function : protein binding
0051260 : Biological Process : protein homooligomerization
SOSUI :
SOLUBLE PROTEIN
PSORT :
E.R. 7.5, E.R._mito 7, cyto 6, mito_pero 5.5,
cyto_pero 5.5, nucl 5, plas 4.5, pero 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001589)
HIX0001589
HIT000387478
(
BC117188
)
Representative transcript
(BTB/POZ domain-containing protein KCTD3; Renal carcinoma antigen NY-REN-45;)
genome : 215,740,840 - 215,794,309 (53,470)
query : 1 - 2,986 (2,986/2,986)
18 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR000210 : BTB/POZ-like
IPR001680 : WD40 repeat
IPR003131 : Potassium channel tetramerisation-type BTB domain
IPR011333 : BTB/POZ fold
IPR017986 : WD40-repeat-containing domain
IPR019775 : WD40 repeat, conserved site
GO :
0005515 : Molecular Function : protein binding
0051260 : Biological Process : protein homooligomerization
SOSUI :
SOLUBLE PROTEIN
PSORT :
E.R. 7.5, E.R._mito 7, cyto 6, mito_pero 5.5,
cyto_pero 5.5, nucl 5, plas 4.5, pero 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001589)
Ortholog candidate ( ->
Evola
)
Rattus
sp. (Rat) : AY724501
Bos
sp. (Cow) : ENSBTAT00000030442
Canis
sp. (Dog) : ENSCAFT00000017052
Oryzias
sp. (Medaka) : ENSORLT00000014384
Pongo
sp. (Orangutan) : ENSPPYT00000000241
Tetraodon
sp. (Tetraodon) : GSTENT00032842001
Takifugu
sp. (Fugu) : SINFRUT00000141609
Macaca
sp. (Macaque) : XM_001105750
Monodelphis
sp. (Opossum) : XM_001367149
Equus
sp. (Horse) : XM_001490733
Pan
sp. (Chimpanzee) : XM_514196
Danio
sp. (Zebrafish) : XM_692476
HIX0001589
HIT000388765
(
BC126173
)
(BTB/POZ domain-containing protein KCTD3; Renal carcinoma antigen NY-REN-45;)
genome : 215,740,840 - 215,794,309 (53,470)
query : 1 - 2,986 (2,986/2,986)
18 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR000210 : BTB/POZ-like
IPR001680 : WD40 repeat
IPR003131 : Potassium channel tetramerisation-type BTB domain
IPR011333 : BTB/POZ fold
IPR017986 : WD40-repeat-containing domain
IPR019775 : WD40 repeat, conserved site
GO :
0005515 : Molecular Function : protein binding
0051260 : Biological Process : protein homooligomerization
SOSUI :
SOLUBLE PROTEIN
PSORT :
E.R. 7.5, E.R._mito 7, cyto 6, mito_pero 5.5,
cyto_pero 5.5, nucl 5, plas 4.5, pero 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001589)
HIX0001589
HIT000502402
(
BC143963
)
(BTB/POZ domain-containing protein KCTD3.)
genome : 215,740,840 - 215,794,308 (53,469)
query : 1 - 3,055 (3,055/3,055)
18 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.986;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR001680 : WD40 repeat
IPR017986 : WD40-repeat-containing domain
IPR019775 : WD40 repeat, conserved site
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
plas 8, nucl 7, cyto_plas 7, cyto 6, pero 6,
cyto_pero 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001589)
HIX0001589
HIT000546267 (
ENST00000448333
)
(BTB/POZ domain-containing protein KCTD3.)
genome : 215,747,129 - 215,754,522 (7,394)
query : 1 - 751 (751/751)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 20, nucl 4.5, cyto_nucl 4.33333,
cyto_pero 3.33333, cyto 3, pero 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001589)
HIX0001589
HIT000490899
(
AK296275
)
(BTB/POZ domain-containing protein KCTD3.)
genome : 215,747,439 - 215,794,571 (47,133)
query : 1 - 2,897 (2,897/2,897)
16 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.994;1.000;1.000;
1.000;0.998)3'
coverage = 1.000
InterPro :
IPR001680 : WD40 repeat
IPR003131 : Potassium channel tetramerisation-type BTB domain
IPR011333 : BTB/POZ fold
IPR017986 : WD40-repeat-containing domain
IPR019775 : WD40 repeat, conserved site
GO :
0005515 : Molecular Function : protein binding
0051260 : Biological Process : protein homooligomerization
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 10.5, cyto_mito 6.5, nucl 6, plas 4.5, E.R. 4,
pero 4, extr_plas 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001589)
HIX0001589
HIT000499885
(
AK316272
)
(BTB/POZ domain-containing protein KCTD3.)
genome : 215,751,340 - 215,794,591 (43,252)
query : 21 - 2,781 (2,761/2,781)
13 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.994;1.000;1.000;1.000;1.000;0.998)3'
coverage = 0.993
InterPro :
IPR001680 : WD40 repeat
IPR017986 : WD40-repeat-containing domain
IPR019775 : WD40 repeat, conserved site
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
plas 6.5, E.R._mito 6.16667, nucl 6, cyto 6,
cyto_nucl 6, mito_pero 5.33333, E.R. 5, pero 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001589)
HIX0001589
HIT000012539
(
AK055925
)
(BTB/POZ domain-containing protein KCTD3.)
genome : 215,752,362 - 215,793,726 (41,365)
query : 1 - 1,714 (1,714/1,714)
12 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.997)3'
coverage = 1.000
InterPro :
IPR001680 : WD40 repeat
IPR017986 : WD40-repeat-containing domain
IPR019775 : WD40 repeat, conserved site
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11.5, cyto_nucl 10, cyto 7.5, plas 7, pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001589)
HIX0001589
HIT000029119
(
AL834389
)
(BTB/POZ domain-containing protein KCTD3.)
genome : 215,752,415 - 215,795,148 (42,734)
query : 1 - 3,166 (3,166/3,177)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR001680 : WD40 repeat
IPR017986 : WD40-repeat-containing domain
IPR019775 : WD40 repeat, conserved site
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 9, cyto 7, plas 5.5, pero 4, extr_plas 4,
mito_pero 4, cyto_golg 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001589)
HIX0001589
HIT000550347 (
ENST00000452413
)
(BTB/POZ domain-containing protein KCTD3.)
genome : 215,775,512 - 215,792,293 (16,782)
query : 1 - 589 (589/589)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, cyto_nucl 16, nucl 8, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001589)
HIX0001589
HIT000028760
(
AL833887
)
(BTB/POZ domain-containing protein KCTD3.)
genome : 215,785,204 - 215,795,078 (9,875)
query : 4 - 2,068 (2,065/2,088)
4 exons
identity = 0.996
5'(0.983;1.000;1.000;0.996)3'
coverage = 0.999
InterPro :
IPR019775 : WD40 repeat, conserved site
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15, mito_nucl 14.3333, cyto_nucl 11.1667,
mito 11, cyto 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001589)
HIX0001589
HIT000095014
(
BC037896
)
(BTB/POZ domain-containing protein KCTD3.)
genome : 215,791,587 - 215,795,072 (3,486)
query : 6 - 2,726 (2,721/2,800)
2 exons
identity = 0.999
5'(0.999;0.999)3'
coverage = 0.997
InterPro :
IPR019775 : WD40 repeat, conserved site
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 28, nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001589)
HIX0001589
HIT000598897 (
ENST00000495537
)
(BTB/POZ domain-containing protein KCTD3.)
genome : 215,791,587 - 215,795,073 (3,487)
query : 1 - 2,722 (2,722/2,722)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 28, nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001589)
HIX0001589
HIT000570339 (
ENST00000465650
)
(BTB/POZ domain-containing protein KCTD3.)
genome : 215,792,047 - 215,793,545 (1,499)
query : 1 - 652 (652/652)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001589)
HIX0001589
HIT000007821
(
AK024547
)
(Hypothetical short protein.)
genome : 215,794,169 - 215,795,148 (980)
query : 1 - 980 (980/996)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001589)
HIX0028527
HIT000117628 (
ENST00000307340
)
(Usherin; Usher syndrome type IIa protein; Usher syndrome type-2A protein; Precursor;)
genome : 215,796,236 - 216,596,738 (800,503)
query : 1 - 18,883 (18,883/18,883)
72 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 28, E.R. 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028527)
HIX0028527
HIT000254882
(
AY481573
)
Representative transcript
(Usherin; Usher syndrome type IIa protein; Usher syndrome type-2A protein; Precursor;)
genome : 215,796,236 - 216,596,738 (800,503)
query : 1 - 18,883 (18,883/18,883)
72 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
InterPro :
IPR001791 : Laminin G domain
IPR002049 : EGF-like, laminin
IPR003961 : Fibronectin type III
IPR006558 : LamG-like jellyroll fold
IPR008211 : Laminin, N-terminal
IPR013320 : Concanavalin A-like lectin/glucanase domain
IPR026915 : Usherin
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 28, E.R. 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028527)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : DQ073638
Bos
sp. (Cow) : ENSBTAT00000048358
Equus
sp. (Horse) : ENSECAT00000029066
Pongo
sp. (Orangutan) : ENSPPYT00000000240
Rattus
sp. (Rat) : ENSRNOT00000029482
Takifugu
sp. (Fugu) : SINFRUT00000162785
Monodelphis
sp. (Opossum) : XM_001375082
Gallus
sp. (Chicken) : XM_419417
Pan
sp. (Chimpanzee) : XM_514197
Canis
sp. (Dog) : XM_545710
Danio
sp. (Zebrafish) : XM_692343
HIX0028527
HIT000320215 (
NM_206933
)
(Usherin; Usher syndrome type IIa protein; Usher syndrome type-2A protein; Precursor;)
genome : 215,796,236 - 216,596,738 (800,503)
query : 1 - 18,883 (18,883/18,883)
72 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 28, E.R. 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028527)
HIX0028527
HIT000348223 (
ENST00000366943
)
(Usherin; Usher syndrome type IIa protein; Usher syndrome type-2A protein; Precursor;)
genome : 215,796,236 - 216,596,738 (800,503)
query : 1 - 18,955 (18,955/18,955)
73 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 28, E.R. 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028527)
HIX0178058
pHIT000003399 ( pHIT000003399 )
(Conserved hypothetical protein.)
genome : 215,044,077 - 215,044,316 (240)
query : 1 - 240 (240/240)
1 exon
InterPro :
IPR016040 : NAD(P)-binding domain
IPR020828 : Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain
IPR020831 : Glyceraldehyde/Erythrose phosphate dehydrogenase family
GO :
0016620 : Molecular Function : oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
0055114 : Biological Process : oxidation-reduction process
SOSUI :
SOLUBLE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0178058)
CAGE tag :
H09BA49N1704,H10BA65N1406,H10BB11M1101
H27BA09P1601,H27BD13G0208
HIX0178058
pHIT000098970 ( pHIT000098970 )
Representative transcript
(Conserved hypothetical protein.)
genome : 215,044,749 - 215,128,901 (84,153)
query : 1 - 627 (627/627)
2 exons
InterPro :
IPR020829 : Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain
IPR020831 : Glyceraldehyde/Erythrose phosphate dehydrogenase family
GO :
0016620 : Molecular Function : oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
0055114 : Biological Process : oxidation-reduction process
SOSUI :
SOLUBLE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0178058)
CAGE tag :
T01F0CB3CEE9
HIX0178058
pHIT000003400 ( pHIT000003400 )
(Conserved hypothetical protein.)
genome : 215,044,749 - 215,045,246 (498)
query : 1 - 498 (498/498)
1 exon
InterPro :
IPR020829 : Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain
IPR020831 : Glyceraldehyde/Erythrose phosphate dehydrogenase family
GO :
0016620 : Molecular Function : oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
0055114 : Biological Process : oxidation-reduction process
SOSUI :
SOLUBLE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0178058)
CAGE tag :
H09BA49N1704,H10BA65N1406,H10BB11M1101
H27BA09P1601,H27BD13G0208
HIX0203459
eHIT000010880 ( ESTsASS_1_886 )
Representative transcript
(Non-protein coding transcript.)
genome : 215,157,275 - 215,176,197 (18,923)
query : 1 - 549 (549/549)
4 exons
ESTs assembly
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0203459)
ESTs used for assembly :
DA597529
AL606537.10
214200001-214228898 F +
NCBI
AL592287.4
214228899-214416283 F +
NCBI
AL929236.4
214416284-214532791 F +
NCBI
AL603838.6
214532792-214565807 F +
NCBI
AL592216.7
214565808-214635994 F +
NCBI
AL445305.11
214635995-214825251 F +
NCBI
AL445666.9
214825252-214890999 F +
NCBI
AC114496.2
214891000-215075550 F +
NCBI
AC099563.3
215075551-215164831 F +
NCBI
AL583830.7
215164832-215191986 F -
NCBI
AC099675.2
215191987-215354792 F +
NCBI
AC092804.2
215354793-215504333 F -
NCBI
AL450990.8
215504334-215621443 F +
NCBI
AL451163.8
215621444-215691989 F +
NCBI
AL365315.8
215691990-215777064 F +
NCBI
AC092799.2
215777065-215800000 F -
NCBI