bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0160416
HIT000516405 (
ENST00000418471
)
(Hypothetical short protein.)
genome : 29,196,995 - 29,203,848 (6,854)
query : 1 - 1,085 (1,085/1,085)
3 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 10.5, mito 10, extr 7, cyto 7, nucl 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0160416)
HIX0213967
HIT000586393 (
ENST00000482464
)
(Conserved hypothetical protein.)
genome : 29,213,633 - 29,319,968 (106,336)
query : 1 - 675 (675/675)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16, mito 12, pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213967)
HIX0029541
pHIT000097469 ( pHIT000097469 )
(Conserved hypothetical protein.)
genome : 29,215,766 - 29,309,122 (93,357)
query : 1 - 957 (957/957)
4 exons
InterPro :
IPR001141 : Ribosomal protein L27e
IPR008991 : Translation protein SH3-like domain
IPR014722 : Ribosomal protein L2 domain 2
GO :
0003735 : Molecular Function : structural constituent of ribosome
0005622 : Cellular Component : intracellular
0005840 : Cellular Component : ribosome
0006412 : Biological Process : translation
SOSUI :
SOLUBLE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0029541)
CAGE tag :
T01F01BBD1CD
HIX0213967
HIT000429521
(
AK310655
)
Representative transcript
(Ezrin/radixin/moesin like family protein.)
genome : 29,241,145 - 29,380,164 (139,020)
query : 1 - 2,219 (2,219/2,219)
11 exons
identity = 0.997
5'(0.993;0.998;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.994;0.995)3'
coverage = 1.000
InterPro :
IPR000299 : FERM domain
IPR000798 : Ezrin/radixin/moesin like
IPR014352 : FERM/acyl-CoA-binding protein, 3-helical bundle
IPR014847 : FERM adjacent (FA)
IPR018980 : FERM, C-terminal PH-like domain
IPR019747 : FERM conserved site
IPR019748 : FERM central domain
IPR019749 : Band 4.1 domain
IPR029071 : Ubiquitin-related domain
GO :
0005737 : Cellular Component : cytoplasm
0005856 : Cellular Component : cytoskeleton
0008092 : Molecular Function : cytoskeletal protein binding
0019898 : Cellular Component : extrinsic component of membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, cyto_nucl 16, cyto 10
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213967)
HIX0203487
HIT000439085_09
(
DQ572554
)
Representative transcript
(Non-protein coding transcript.)
genome : 29,249,359 - 29,249,389 (31)
query : 1 - 31 (31/31)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0203487)
HIX0029541
HIT000523755 (
ENST00000425821
)
(Ribosomal protein L27e family protein.)
genome : 29,308,790 - 29,309,120 (331)
query : 1 - 331 (331/331)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, nucl 4, cyto 4, cyto_nucl 4, E.R._mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0029541)
HIX0029541
pHIT000000896 ( pHIT000000896 )
(Conserved hypothetical protein.)
genome : 29,308,835 - 29,309,122 (288)
query : 1 - 288 (288/288)
1 exon
InterPro :
IPR001141 : Ribosomal protein L27e
IPR008991 : Translation protein SH3-like domain
IPR014722 : Ribosomal protein L2 domain 2
GO :
0003735 : Molecular Function : structural constituent of ribosome
0005622 : Cellular Component : intracellular
0005840 : Cellular Component : ribosome
0006412 : Biological Process : translation
SOSUI :
SOLUBLE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0029541)
CAGE tag :
H21BB73H0208
HIX0029541
HIT000101282
(
D28453
)
Representative transcript
(Non-protein coding transcript.)
genome : 29,309,117 - 29,309,156 (40)
query : 5 - 44 (40/44)
1 exon
identity = 0.975
3'(0.975)5'
coverage = 0.909
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0029541)
HIX0213806
HIT000591932 (
ENST00000488277
)
(SAB domain containing protein.)
genome : 29,385,116 - 29,424,361 (39,246)
query : 1 - 262 (262/262)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, nucl 9, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213806)
HIX0213806
HIT000593874 (
ENST00000490308
)
(SAB domain containing protein.)
genome : 29,391,469 - 29,435,870 (44,402)
query : 1 - 354 (354/354)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 24, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213806)
HIX0213806
HIT000493717
(
AK299093
)
Representative transcript
(Protein 4.1; P4.1; 4.1R; Band 4.1; EPB4.1;)
genome : 29,391,489 - 29,443,949 (52,461)
query : 10 - 1,227 (1,218/1,227)
6 exons
identity = 0.998
5'(0.995;1.000;1.000;1.000;0.990;1.000)3'
coverage = 0.993
InterPro :
IPR007477 : SAB domain
IPR008379 : Band 4.1, C-terminal
GO :
0003779 : Molecular Function : actin binding
0005198 : Molecular Function : structural molecule activity
0005856 : Cellular Component : cytoskeleton
0008092 : Molecular Function : cytoskeletal protein binding
0030866 : Biological Process : cortical actin cytoskeleton organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, cyto_nucl 15.3333, cyto_pero 9.83333,
nucl 7.5, extr 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213806)
HIX0213806
HIT000494360
(
AK299736
)
(Protein 4.1; P4.1; 4.1R; Band 4.1; EPB4.1;)
genome : 29,391,489 - 29,443,961 (52,473)
query : 7 - 1,107 (1,101/1,107)
5 exons
identity = 0.999
5'(0.995;1.000;1.000;1.000;1.000)3'
coverage = 0.995
InterPro :
IPR007477 : SAB domain
IPR008379 : Band 4.1, C-terminal
GO :
0003779 : Molecular Function : actin binding
0005198 : Molecular Function : structural molecule activity
0005856 : Cellular Component : cytoskeleton
0008092 : Molecular Function : cytoskeletal protein binding
0030866 : Biological Process : cortical actin cytoskeleton organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 16, nucl 6.5, extr 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213806)
HIX0213806
HIT000426682
(
AK307816
)
(Protein 4.1; P4.1; 4.1R; Band 4.1; EPB4.1;)
genome : 29,410,409 - 29,443,714 (33,306)
query : 1 - 1,028 (1,028/1,028)
6 exons
identity = 0.998
5'(0.996;1.000;1.000;1.000;1.000;0.997)3'
coverage = 1.000
InterPro :
IPR008379 : Band 4.1, C-terminal
GO :
0003779 : Molecular Function : actin binding
0005198 : Molecular Function : structural molecule activity
0005856 : Cellular Component : cytoskeleton
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 21.5, mito_pero 12, extr 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213806)
HIX0213806
HIT000028395
(
AL833483
)
(Protein 4.1; P4.1; 4.1R; Band 4.1; EPB4.1;)
genome : 29,422,744 - 29,446,546 (23,803)
query : 1 - 5,211 (5,211/5,229)
5 exons
identity = 0.998
5'(0.997;1.000;1.000;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR008379 : Band 4.1, C-terminal
GO :
0003779 : Molecular Function : actin binding
0005198 : Molecular Function : structural molecule activity
0005856 : Cellular Component : cytoskeleton
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 22, cyto 6, nucl 3, cyto_pero 3, cyto_plas 3,
cyto_golg 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213806)
HIX0213806
HIT000565309 (
ENST00000460378
)
(Band 4.1, C-terminal domain containing protein.)
genome : 29,422,744 - 29,446,550 (23,807)
query : 1 - 5,212 (5,212/5,212)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 22, cyto 6, nucl 3, cyto_pero 3, cyto_plas 3,
cyto_golg 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213806)
HIX0213806
HIT000566888 (
ENST00000462032
)
(Band 4.1, C-terminal domain containing protein.)
genome : 29,424,099 - 29,436,250 (12,152)
query : 1 - 752 (752/752)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213806)
HIX0213806
HIT000087203
(
BC009063
)
(Hypothetical protein.)
genome : 29,445,250 - 29,446,546 (1,297)
query : 1 - 1,297 (1,297/1,328)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 12.5, cyto_nucl 9.5, mito 6, plas 5, cyto 3.5,
E.R. 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213806)
HIX0199923
HIT000266026
(
BC082989
)
Representative transcript
(Transmembrane protein 200B; Transmembrane protein TTMA; Two transmembrane domain-containing family member B;)
genome : 29,445,939 - 29,450,421 (4,483)
query : 1 - 2,474 (2,474/2,540)
2 exons
identity = 0.999
3'(0.999;1.000)5'
coverage = 1.000
InterPro :
IPR018787 : Protein of unknown function DUF2371, TMEM200
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199923)
Ortholog candidate ( ->
Evola
)
Gallus
sp. (Chicken) : ENSGALT00000041093
Macaca
sp. (Macaque) : ENSMMUT00000015935
Pongo
sp. (Orangutan) : ENSPPYT00000001941
Pan
sp. (Chimpanzee) : ENSPTRT00000000863
Rattus
sp. (Rat) : XM_001068178
Danio
sp. (Zebrafish) : XM_001342709
Monodelphis
sp. (Opossum) : XM_001373461
Mus
sp. (Mouse) : XM_001475812
Equus
sp. (Horse) : XM_001500285
Bos
sp. (Cow) : XM_590778
Canis
sp. (Dog) : XM_849712
HIX0199923
HIT000093024
(
BC033289
)
(Hypothetical short protein.)
genome : 29,445,944 - 29,446,614 (671)
query : 1 - 670 (670/723)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, cyto 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199923)
HIX0199923
HIT000261338
(
BC064375
)
(Transmembrane protein 200B; Transmembrane protein TTMA; Two transmembrane domain-containing family member B;)
genome : 29,445,940 - 29,450,407 (4,468)
query : 1 - 2,459 (2,459/2,489)
2 exons
identity = 0.999
3'(0.999;1.000)5'
coverage = 1.000
InterPro :
IPR018787 : Protein of unknown function DUF2371, TMEM200
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199923)
HIX0199923
HIT000261457
(
BC064538
)
(Transmembrane protein 200B.)
genome : 29,445,940 - 29,448,339 (2,400)
query : 1 - 2,399 (2,399/2,425)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
InterPro :
IPR018787 : Protein of unknown function DUF2371, TMEM200
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199923)
HIX0199923
HIT000315720 (
NM_001003682
)
(Transmembrane protein 200B; Transmembrane protein TTMA; Two transmembrane domain-containing family member B;)
genome : 29,445,937 - 29,450,421 (4,485)
query : 1 - 2,478 (2,478/2,500)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199923)
HIX0199923
HIT000654831 (
NM_001171868
)
(Transmembrane protein 200B; Transmembrane protein TTMA; Two transmembrane domain-containing family member B;)
genome : 29,445,937 - 29,449,013 (3,077)
query : 1 - 2,562 (2,562/2,584)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199923)
HIX0199923
HIT000339503
(
BC110336
)
(Transmembrane protein 200B; Transmembrane protein TTMA; Two transmembrane domain-containing family member B;)
genome : 29,445,946 - 29,449,013 (3,068)
query : 1 - 2,553 (2,553/2,581)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
InterPro :
IPR018787 : Protein of unknown function DUF2371, TMEM200
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199923)
HIX0199923
HIT000024545
(
AL110282
)
(Transmembrane protein 200B; Transmembrane protein TTMA; Two transmembrane domain-containing family member B;)
genome : 29,445,944 - 29,448,704 (2,761)
query : 2 - 2,761 (2,760/2,783)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
InterPro :
IPR018787 : Protein of unknown function DUF2371, TMEM200
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199923)
HIX0199923
HIT000620769 (
ENST00000521452
)
(Transmembrane protein 200B; Transmembrane protein TTMA; Two transmembrane domain-containing family member B;)
genome : 29,445,940 - 29,450,447 (4,508)
query : 1 - 2,501 (2,501/2,501)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199923)
HIX0199923
HIT000518438 (
ENST00000420504
)
(Transmembrane protein 200B; Transmembrane protein TTMA; Two transmembrane domain-containing family member B;)
genome : 29,445,946 - 29,449,013 (3,068)
query : 1 - 2,553 (2,553/2,553)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199923)
HIX0160261
HIT000510938 (
ENST00000413004
)
(Non-protein coding transcript.)
genome : 29,471,006 - 29,473,506 (2,501)
query : 1 - 279 (279/279)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0160261)
HIX0000344
HIT000331224
(
AK223444
)
(Serine/arginine-rich splicing factor 4; Pre-mRNA-splicing factor SRP75; SRP001LB; Splicing factor, arginine/serine-rich 4;)
genome : 29,474,258 - 29,508,413 (34,156)
query : 2 - 1,705 (1,704/1,728)
7 exons
identity = 0.998
3'(1.000;0.994;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.999
InterPro :
IPR000504 : RNA recognition motif domain
IPR012677 : Nucleotide-binding alpha-beta plait domain
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29.5, cyto_nucl 16
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000344)
HIX0000344
HIT000202304 (
NM_005626
)
(RNA recognition motif domain containing protein.)
genome : 29,474,250 - 29,508,637 (34,388)
query : 1 - 2,530 (2,530/2,535)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29.5, cyto_nucl 16
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000344)
HIX0000344
HIT000355075 (
ENST00000373795
)
(RNA recognition motif domain containing protein.)
genome : 29,474,255 - 29,508,499 (34,245)
query : 1 - 2,387 (2,387/2,387)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29.5, cyto_nucl 16
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000344)
HIX0000344
HIT000031180
(
BC002781
)
Representative transcript
(Serine/arginine-rich splicing factor 4; Pre-mRNA-splicing factor SRP75; SRP001LB; Splicing factor, arginine/serine-rich 4;)
genome : 29,474,364 - 29,508,361 (33,998)
query : 1 - 2,140 (2,140/2,158)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000504 : RNA recognition motif domain
IPR012677 : Nucleotide-binding alpha-beta plait domain
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29.5, cyto_nucl 16
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000344)
HIX0000344
HIT000424306
(
AK291509
)
(Serine/arginine-rich splicing factor 4; Pre-mRNA-splicing factor SRP75; SRP001LB; Splicing factor, arginine/serine-rich 4;)
genome : 29,474,365 - 29,508,359 (33,995)
query : 1 - 2,137 (2,137/2,137)
6 exons
identity = 0.999
3'(0.999;1.000;1.000;1.000;1.000;0.995)5'
coverage = 1.000
InterPro :
IPR000504 : RNA recognition motif domain
IPR012677 : Nucleotide-binding alpha-beta plait domain
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29.5, cyto_nucl 16
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000344)
HIX0000344
HIT000329791
(
AB209856
)
(Serine/arginine-rich splicing factor 4; Pre-mRNA-splicing factor SRP75; SRP001LB; Splicing factor, arginine/serine-rich 4;)
genome : 29,474,365 - 29,500,859 (26,495)
query : 1 - 8,245 (8,245/8,245)
8 exons
identity = 0.998
3'(0.999;1.000;1.000;0.997;1.000;1.000;0.998;
0.991)5'
coverage = 1.000
InterPro :
IPR000504 : RNA recognition motif domain
IPR012677 : Nucleotide-binding alpha-beta plait domain
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, cysk 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000344)
HIX0000344
HIT000192237
(
L14076
)
(Serine/arginine-rich splicing factor 4; Pre-mRNA-splicing factor SRP75; SRP001LB; Splicing factor, arginine/serine-rich 4;)
genome : 29,474,391 - 29,508,312 (33,922)
query : 1 - 2,063 (2,063/2,076)
6 exons
identity = 0.997
3'(0.997;0.989;0.995;1.000;1.000;0.994)5'
coverage = 0.994
InterPro :
IPR000504 : RNA recognition motif domain
IPR012677 : Nucleotide-binding alpha-beta plait domain
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29.5, cyto_nucl 16
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000344)
HIX0000344
HIT000488330
(
AK293706
)
(Serine/arginine-rich splicing factor 4; Pre-mRNA-splicing factor SRP75; SRP001LB; Splicing factor, arginine/serine-rich 4;)
genome : 29,474,657 - 29,508,410 (33,754)
query : 1 - 1,591 (1,591/1,591)
4 exons
identity = 0.996
3'(0.995;1.000;1.000;0.996)5'
coverage = 1.000
InterPro :
IPR000504 : RNA recognition motif domain
IPR012677 : Nucleotide-binding alpha-beta plait domain
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 16, cyto 7.5, cyto_nucl 7.5, nucl 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000344)
HIX0000344
HIT000645183 (
ENST00000546138
)
(RNA recognition motif domain containing protein.)
genome : 29,474,657 - 29,508,410 (33,754)
query : 1 - 1,591 (1,591/1,591)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 13, nucl 9.5, cyto_nucl 9, cyto 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000344)
HIX0000344
HIT000100335
(
BT007415
)
(Serine/arginine-rich splicing factor 4; Pre-mRNA-splicing factor SRP75; SRP001LB; Splicing factor, arginine/serine-rich 4;)
genome : 29,474,923 - 29,508,264 (33,342)
query : 1 - 1,484 (1,484/1,485)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.999
InterPro :
IPR000504 : RNA recognition motif domain
IPR012677 : Nucleotide-binding alpha-beta plait domain
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29.5, cyto_nucl 16
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000344)
HIX0000344
HIT000571101 (
ENST00000466448
)
(RNA recognition motif domain containing protein.)
genome : 29,475,183 - 29,508,394 (33,212)
query : 1 - 1,264 (1,264/1,264)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29.5, cyto_nucl 16
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000344)
HIX0161328
HIT000548042 (
ENST00000450108
)
(Non-protein coding transcript.)
genome : 29,479,001 - 29,479,503 (503)
query : 1 - 320 (320/320)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0161328)
HIX0000344
HIT000600310 (
ENST00000497015
)
(RNA recognition motif domain containing protein.)
genome : 29,481,209 - 29,487,075 (5,867)
query : 1 - 516 (516/516)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26.5, mito_nucl 15.6667, cyto_nucl 14.8333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000344)
HIX0000344
HIT000429394
(
AK310528
)
(RNA recognition motif domain containing protein.)
genome : 29,481,248 - 29,508,402 (27,155)
query : 1 - 1,399 (1,399/1,399)
8 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.996)5'
coverage = 1.000
InterPro :
IPR000504 : RNA recognition motif domain
IPR012677 : Nucleotide-binding alpha-beta plait domain
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, cyto_nucl 10.5, extr 9, nucl 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000344)
HIX0000344
HIT000581350 (
ENST00000477193
)
(RNA recognition motif domain containing protein.)
genome : 29,481,384 - 29,486,052 (4,669)
query : 1 - 206 (206/206)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto_nucl 14, cyto 7, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000344)
HIX0000344
HIT000593485 (
ENST00000489898
)
(Conserved hypothetical protein.)
genome : 29,485,896 - 29,486,981 (1,086)
query : 1 - 393 (393/393)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto 9, extr_plas 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000344)
HIX0000344
HIT000576733 (
ENST00000472353
)
(RNA recognition motif domain containing protein.)
genome : 29,486,894 - 29,495,151 (8,258)
query : 1 - 632 (632/632)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000344)
HIX0000344
HIT000328477
(
AB073890
)
(Conserved hypothetical protein.)
genome : 29,494,541 - 29,496,333 (1,793)
query : 7 - 1,798 (1,792/1,814)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 0.997
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, nucl 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000344)
HIX0000345
HIT000205788 (
NM_016011
)
(Alcohol dehydrogenase superfamily, zinc-type protein.)
genome : 29,519,385 - 29,557,454 (38,070)
query : 1 - 2,307 (2,307/2,307)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 1.3.1.38
KEGG pathway :
00062 : Fatty acid elongation (9)
01040 : Biosynthesis of unsaturated fatty acids (9)
01100 : Metabolic pathways (1346)
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 21.5, cyto_mito 14.5, cyto 6.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000345)
HIX0000345
HIT000365735 (
NM_001024732
)
(Alcohol dehydrogenase superfamily, zinc-type protein.)
genome : 29,519,385 - 29,557,454 (38,070)
query : 1 - 2,434 (2,434/2,434)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 1.3.1.38
KEGG pathway :
00062 : Fatty acid elongation (9)
01040 : Biosynthesis of unsaturated fatty acids (9)
01100 : Metabolic pathways (1346)
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, cysk 8, mito 2, lyso 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000345)
HIX0000345
HIT000019954
(
AK095099
)
Representative transcript
(Trans-2-enoyl-CoA reductase, mitochondrial isoform b.)
genome : 29,519,385 - 29,557,436 (38,052)
query : 1 - 2,417 (2,417/2,417)
10 exons
identity = 0.993
3'(0.988;1.000;1.000;1.000;1.000;0.990;1.000;
0.992;1.000;1.000)5'
coverage = 1.000
EC number :
EC 1.3.1.38
KEGG pathway :
00062 : Fatty acid elongation (9)
01040 : Biosynthesis of unsaturated fatty acids (9)
01100 : Metabolic pathways (1346)
InterPro :
IPR002085 : Alcohol dehydrogenase superfamily, zinc-type
IPR011032 : GroES (chaperonin 10)-like
IPR013149 : Alcohol dehydrogenase, C-terminal
IPR013154 : Alcohol dehydrogenase GroES-like
IPR016040 : NAD(P)-binding domain
GO :
0008270 : Molecular Function : zinc ion binding
0016491 : Molecular Function : oxidoreductase activity
0055114 : Biological Process : oxidation-reduction process
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, cyto_nucl 11.5, cysk 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000345)
HIX0000345
HIT000355071 (
ENST00000373791
)
(Alcohol dehydrogenase superfamily, zinc-type protein.)
genome : 29,519,385 - 29,557,436 (38,052)
query : 1 - 2,416 (2,416/2,416)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, cysk 8, mito 2, lyso 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000345)
HIX0000345
HIT000384817
(
AK225687
)
(Trans-2-enoyl-CoA reductase, mitochondrial; EC=1.3.1.38; Nuclear receptor-binding factor 1; HsNrbf-1; NRBF-1; Precursor;)
genome : 29,519,521 - 29,557,436 (37,916)
query : 1 - 2,153 (2,153/2,153)
10 exons
identity = 0.997
3'(0.997;1.000;0.984;1.000;0.990;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 1.3.1.38
KEGG pathway :
00062 : Fatty acid elongation (9)
01040 : Biosynthesis of unsaturated fatty acids (9)
01100 : Metabolic pathways (1346)
InterPro :
IPR002085 : Alcohol dehydrogenase superfamily, zinc-type
IPR011032 : GroES (chaperonin 10)-like
IPR013149 : Alcohol dehydrogenase, C-terminal
IPR013154 : Alcohol dehydrogenase GroES-like
IPR016040 : NAD(P)-binding domain
GO :
0008270 : Molecular Function : zinc ion binding
0016491 : Molecular Function : oxidoreductase activity
0055114 : Biological Process : oxidation-reduction process
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 21.5, cyto_mito 14.5, cyto 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000345)
HIX0000345
HIT000030397
(
BC001419
)
(Trans-2-enoyl-CoA reductase, mitochondrial; EC=1.3.1.38; Nuclear receptor-binding factor 1; HsNrbf-1; NRBF-1; Precursor;)
genome : 29,520,333 - 29,557,441 (37,109)
query : 1 - 1,346 (1,346/1,365)
10 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;0.990;1.000;
0.992;1.000;1.000)5'
coverage = 1.000
EC number :
EC 1.3.1.38
KEGG pathway :
00062 : Fatty acid elongation (9)
01040 : Biosynthesis of unsaturated fatty acids (9)
01100 : Metabolic pathways (1346)
InterPro :
IPR002085 : Alcohol dehydrogenase superfamily, zinc-type
IPR011032 : GroES (chaperonin 10)-like
IPR013149 : Alcohol dehydrogenase, C-terminal
IPR013154 : Alcohol dehydrogenase GroES-like
IPR016040 : NAD(P)-binding domain
GO :
0008270 : Molecular Function : zinc ion binding
0016491 : Molecular Function : oxidoreductase activity
0055114 : Biological Process : oxidation-reduction process
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 21.5, cyto_mito 14.5, cyto 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000345)
HIX0000345
HIT000009104
(
AK025830
)
(Trans-2-enoyl-CoA reductase, mitochondrial; EC=1.3.1.38; Nuclear receptor-binding factor 1; HsNrbf-1; NRBF-1; Precursor;)
genome : 29,520,333 - 29,557,436 (37,104)
query : 1 - 1,341 (1,341/1,357)
10 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;0.990;1.000;
0.992;1.000;1.000)5'
coverage = 1.000
EC number :
EC 1.3.1.38
KEGG pathway :
00062 : Fatty acid elongation (9)
01040 : Biosynthesis of unsaturated fatty acids (9)
01100 : Metabolic pathways (1346)
InterPro :
IPR002085 : Alcohol dehydrogenase superfamily, zinc-type
IPR011032 : GroES (chaperonin 10)-like
IPR013149 : Alcohol dehydrogenase, C-terminal
IPR013154 : Alcohol dehydrogenase GroES-like
IPR016040 : NAD(P)-binding domain
GO :
0008270 : Molecular Function : zinc ion binding
0016491 : Molecular Function : oxidoreductase activity
0055114 : Biological Process : oxidation-reduction process
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 21.5, cyto_mito 14.5, cyto 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000345)
HIX0000345
HIT000579999 (
ENST00000475773
)
(Alcohol dehydrogenase, C-terminal domain containing protein.)
genome : 29,520,323 - 29,529,713 (9,391)
query : 1 - 780 (780/780)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, cyto 6, cyto_nucl 4.83333, cyto_pero 3.83333,
nucl 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000345)
HIX0000345
HIT000108997 (
ENST00000263702
)
(Alcohol dehydrogenase superfamily, zinc-type protein.)
genome : 29,520,329 - 29,557,444 (37,116)
query : 1 - 1,353 (1,353/1,353)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 21.5, cyto_mito 14.5, cyto 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000345)
HIX0000345
HIT000587327 (
ENST00000483435
)
(Alcohol dehydrogenase, C-terminal domain containing protein.)
genome : 29,520,329 - 29,527,101 (6,773)
query : 1 - 571 (571/571)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11, nucl 10, extr 6, mito_nucl 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000345)
HIX0000345
HIT000071634
(
AF151821
)
(Trans-2-enoyl-CoA reductase, mitochondrial isoform b.)
genome : 29,520,330 - 29,557,444 (37,115)
query : 1 - 1,352 (1,352/1,352)
10 exons
identity = 0.995
3'(1.000;1.000;1.000;0.986;1.000;0.990;1.000;
0.992;1.000;0.980)5'
coverage = 1.000
EC number :
EC 1.3.1.38
KEGG pathway :
00062 : Fatty acid elongation (9)
01040 : Biosynthesis of unsaturated fatty acids (9)
01100 : Metabolic pathways (1346)
InterPro :
IPR002085 : Alcohol dehydrogenase superfamily, zinc-type
IPR011032 : GroES (chaperonin 10)-like
IPR013149 : Alcohol dehydrogenase, C-terminal
IPR013154 : Alcohol dehydrogenase GroES-like
IPR016040 : NAD(P)-binding domain
GO :
0008270 : Molecular Function : zinc ion binding
0016491 : Molecular Function : oxidoreductase activity
0055114 : Biological Process : oxidation-reduction process
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 21.5, cyto_mito 14.5, cyto 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000345)
HIX0000345
HIT000577373 (
ENST00000473030
)
(Alcohol dehydrogenase GroES-like domain containing protein.)
genome : 29,520,386 - 29,543,125 (22,740)
query : 1 - 919 (919/919)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, cyto_nucl 13.5, nucl 6, cysk 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000345)
HIX0000345
HIT000434140
(
AK315274
)
(Trans-2-enoyl-CoA reductase, mitochondrial; EC=1.3.1.38; Nuclear receptor-binding factor 1; HsNrbf-1; NRBF-1; Precursor;)
genome : 29,520,534 - 29,557,457 (36,924)
query : 1 - 1,161 (1,161/1,161)
10 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;1.000;0.990;1.000;
0.992;1.000;1.000)5'
coverage = 1.000
EC number :
EC 1.3.1.38
KEGG pathway :
00062 : Fatty acid elongation (9)
01040 : Biosynthesis of unsaturated fatty acids (9)
01100 : Metabolic pathways (1346)
InterPro :
IPR002085 : Alcohol dehydrogenase superfamily, zinc-type
IPR011032 : GroES (chaperonin 10)-like
IPR013149 : Alcohol dehydrogenase, C-terminal
IPR013154 : Alcohol dehydrogenase GroES-like
IPR016040 : NAD(P)-binding domain
GO :
0008270 : Molecular Function : zinc ion binding
0016491 : Molecular Function : oxidoreductase activity
0055114 : Biological Process : oxidation-reduction process
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 21.5, cyto_mito 14.5, cyto 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000345)
HIX0000345
HIT000267553
(
CR456703
)
(Trans-2-enoyl-CoA reductase, mitochondrial; EC=1.3.1.38; Nuclear receptor-binding factor 1; HsNrbf-1; NRBF-1; Precursor;)
genome : 29,520,538 - 29,557,418 (36,881)
query : 1 - 1,118 (1,118/1,122)
10 exons
identity = 0.997
3'(0.994;1.000;1.000;1.000;1.000;0.990;1.000;
0.992;1.000;1.000)5'
coverage = 0.996
EC number :
EC 1.3.1.38
KEGG pathway :
00062 : Fatty acid elongation (9)
01040 : Biosynthesis of unsaturated fatty acids (9)
01100 : Metabolic pathways (1346)
InterPro :
IPR002085 : Alcohol dehydrogenase superfamily, zinc-type
IPR011032 : GroES (chaperonin 10)-like
IPR013149 : Alcohol dehydrogenase, C-terminal
IPR013154 : Alcohol dehydrogenase GroES-like
IPR016040 : NAD(P)-binding domain
GO :
0008270 : Molecular Function : zinc ion binding
0016491 : Molecular Function : oxidoreductase activity
0055114 : Biological Process : oxidation-reduction process
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 21.5, cyto_mito 14.5, cyto 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000345)
HIX0000345
HIT000582609 (
ENST00000478505
)
(Alcohol dehydrogenase GroES-like domain containing protein.)
genome : 29,520,536 - 29,547,424 (26,889)
query : 1 - 1,013 (1,013/1,013)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 12, cysk 8, nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000345)
HIX0000345
HIT000568207 (
ENST00000463412
)
(Alcohol dehydrogenase superfamily, zinc-type protein.)
genome : 29,520,544 - 29,542,541 (21,998)
query : 1 - 915 (915/915)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 12.3333, cyto_pero 9.16667,
nucl 6, cysk 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000345)
HIX0000345
HIT000551119 (
ENST00000453185
)
(Alcohol dehydrogenase superfamily, zinc-type protein.)
genome : 29,522,456 - 29,533,340 (10,885)
query : 1 - 623 (623/623)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 17.5, nucl 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000345)
HIX0000345
HIT000594085 (
ENST00000490529
)
(Alcohol dehydrogenase GroES-like domain containing protein.)
genome : 29,522,654 - 29,557,406 (34,753)
query : 1 - 832 (832/832)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24, cyto 4, nucl 2, cyto_golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000345)
HIX0000345
HIT000385214
(
AK226084
)
(Trans-2-enoyl-CoA reductase, mitochondrial isoform b.)
genome : 29,526,149 - 29,557,417 (31,269)
query : 1 - 1,835 (1,835/1,835)
7 exons
identity = 0.997
3'(0.998;1.000;0.990;1.000;0.985;1.000;1.000)5'
coverage = 1.000
EC number :
EC 1.3.1.38
KEGG pathway :
00062 : Fatty acid elongation (9)
01040 : Biosynthesis of unsaturated fatty acids (9)
01100 : Metabolic pathways (1346)
InterPro :
IPR002085 : Alcohol dehydrogenase superfamily, zinc-type
IPR016040 : NAD(P)-binding domain
GO :
0008270 : Molecular Function : zinc ion binding
0016491 : Molecular Function : oxidoreductase activity
0055114 : Biological Process : oxidation-reduction process
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 12, cyto 11, cyto_nucl 9.5, nucl 6, cysk_plas 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000345)
HIX0000345
HIT000569256 (
ENST00000464511
)
(NAD(P)-binding domain containing protein.)
genome : 29,526,836 - 29,529,682 (2,847)
query : 1 - 409 (409/409)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 20, cyto 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000345)
HIX0000345
HIT000495513
(
AK300889
)
(Trans-2-enoyl-CoA reductase, mitochondrial isoform a.)
genome : 29,526,921 - 29,557,434 (30,514)
query : 1 - 953 (953/956)
7 exons
identity = 0.997
3'(1.000;1.000;0.990;0.993;0.992;1.000;1.000)5'
coverage = 0.997
EC number :
EC 1.3.1.38
KEGG pathway :
00062 : Fatty acid elongation (9)
01040 : Biosynthesis of unsaturated fatty acids (9)
01100 : Metabolic pathways (1346)
InterPro :
IPR002085 : Alcohol dehydrogenase superfamily, zinc-type
IPR011032 : GroES (chaperonin 10)-like
IPR013154 : Alcohol dehydrogenase GroES-like
IPR016040 : NAD(P)-binding domain
GO :
0008270 : Molecular Function : zinc ion binding
0016491 : Molecular Function : oxidoreductase activity
0055114 : Biological Process : oxidation-reduction process
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 23.5, cyto_mito 14.5, cyto 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000345)
HIX0000345
HIT000567862 (
ENST00000463052
)
(Alcohol dehydrogenase GroES-like domain containing protein.)
genome : 29,528,529 - 29,557,413 (28,885)
query : 1 - 906 (906/906)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 12, extr 5, cysk 5, nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000345)
HIX0000345
HIT000592859 (
ENST00000489248
)
(Alcohol dehydrogenase GroES-like domain containing protein.)
genome : 29,529,654 - 29,557,418 (27,765)
query : 1 - 968 (968/968)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 12, cysk 8, nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000345)
HIX0000345
HIT000580081 (
ENST00000475861
)
(Alcohol dehydrogenase GroES-like domain containing protein.)
genome : 29,529,707 - 29,557,406 (27,700)
query : 1 - 792 (792/792)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 13, extr 8, nucl 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000345)
HIX0000345
HIT000579217 (
ENST00000474946
)
(Alcohol dehydrogenase GroES-like domain containing protein.)
genome : 29,533,286 - 29,557,427 (24,142)
query : 1 - 631 (631/631)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17, plas 7, nucl 3, E.R. 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000345)
HIX0000345
HIT000569635 (
ENST00000464915
)
(Alcohol dehydrogenase GroES-like domain containing protein.)
genome : 29,542,549 - 29,550,061 (7,513)
query : 1 - 692 (692/692)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 11, plas 9.5, extr_plas 6, mito_pero 6, E.R. 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000345)
HIX0000345
HIT000586535 (
ENST00000482610
)
(Conserved hypothetical protein.)
genome : 29,542,605 - 29,557,403 (14,799)
query : 1 - 570 (570/570)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18, cyto 6, extr 4, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000345)
HIX0000345
HIT000587879 (
ENST00000484012
)
(Hypothetical protein.)
genome : 29,543,113 - 29,557,454 (14,342)
query : 1 - 598 (598/598)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14.5, extr 14, cyto_nucl 9.33333, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000345)
HIX0000345
HIT000597346 (
ENST00000493928
)
(Hypothetical protein.)
genome : 29,547,395 - 29,557,454 (10,060)
query : 1 - 498 (498/498)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15.5, extr 10, cyto_mito 10, cyto_nucl 3.5,
cyto_pero 3.16667, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000345)
HIX0160667
HIT000524980 (
ENST00000427046
)
(Hypothetical short protein.)
genome : 29,550,445 - 29,551,328 (884)
query : 1 - 573 (573/573)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0160667)
HIX0000346
HIT000324976
(
X97198
)
(Receptor-type tyrosine-protein phosphatase U; R-PTP-U; EC=3.1.3.48; Pancreatic carcinoma phosphatase 2; PCP-2; Protein-tyrosine phosphatase J; PTP-J; hPTP-J; Protein-tyrosine phosphatase pi; PTP pi; Protein-tyrosine phosphatase receptor omicron; PTP-RO; Receptor-type protein-tyrosine phosphatase psi; R-PTP-psi; Precursor;)
genome : 29,563,028 - 29,653,312 (90,285)
query : 8 - 5,560 (5,553/5,581)
30 exons
identity = 0.992
5'(0.980;1.000;0.978;1.000;0.940;0.954;0.993;
0.997;1.000;1.000;1.000;0.985;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.987;1.000;1.000;1.000;0.979;1.000;0.987;
0.993;0.996)3'
coverage = 0.999
EC number :
EC 3.1.3.48
InterPro :
IPR000242 : Protein-tyrosine phosphatase, receptor/non-receptor type
IPR000387 : Protein-tyrosine/Dual specificity phosphatase
IPR000998 : MAM domain
IPR003595 : Protein-tyrosine phosphatase, catalytic
IPR003961 : Fibronectin type III
IPR016130 : Protein-tyrosine phosphatase, active site
IPR029021 : Protein-tyrosine phosphatase-like
GO :
0004725 : Molecular Function : protein tyrosine phosphatase activity
0005515 : Molecular Function : protein binding
0006470 : Biological Process : protein dephosphorylation
0016020 : Cellular Component : membrane
0016311 : Biological Process : dephosphorylation
0016791 : Molecular Function : phosphatase activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 16, plas 5, pero 4, E.R. 3, lyso 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000346)
HIX0000346
HIT000202373 (
NM_005704
)
(Receptor-type tyrosine-protein phosphatase U; R-PTP-U; EC=3.1.3.48; Pancreatic carcinoma phosphatase 2; PCP-2; Protein-tyrosine phosphatase J; PTP-J; hPTP-J; Protein-tyrosine phosphatase pi; PTP pi; Protein-tyrosine phosphatase receptor omicron; PTP-RO; Receptor-type protein-tyrosine phosphatase psi; R-PTP-psi; Precursor;)
genome : 29,563,028 - 29,653,325 (90,298)
query : 1 - 5,622 (5,622/5,632)
31 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 16.5, extr_plas 11.5, plas 5.5, pero 4, E.R. 3,
lyso 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000346)
HIX0000346
HIT000212137 (
NM_133177
)
(Receptor-type tyrosine-protein phosphatase U; R-PTP-U; EC=3.1.3.48; Pancreatic carcinoma phosphatase 2; PCP-2; Protein-tyrosine phosphatase J; PTP-J; hPTP-J; Protein-tyrosine phosphatase pi; PTP pi; Protein-tyrosine phosphatase receptor omicron; PTP-RO; Receptor-type protein-tyrosine phosphatase psi; R-PTP-psi; Precursor;)
genome : 29,563,028 - 29,653,325 (90,298)
query : 1 - 5,604 (5,604/5,614)
31 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 16, plas 5, pero 5, E.R. 3, lyso 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000346)
HIX0000346
HIT000212138 (
NM_133178
)
(Receptor-type tyrosine-protein phosphatase U; R-PTP-U; EC=3.1.3.48; Pancreatic carcinoma phosphatase 2; PCP-2; Protein-tyrosine phosphatase J; PTP-J; hPTP-J; Protein-tyrosine phosphatase pi; PTP pi; Protein-tyrosine phosphatase receptor omicron; PTP-RO; Receptor-type protein-tyrosine phosphatase psi; R-PTP-psi; Precursor;)
genome : 29,563,028 - 29,653,325 (90,298)
query : 1 - 5,592 (5,592/5,602)
30 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 16, plas 5, E.R. 4, pero 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000346)
HIX0000346
HIT000655943 (
NM_001195001
)
(Receptor-type tyrosine-protein phosphatase U; R-PTP-U; EC=3.1.3.48; Pancreatic carcinoma phosphatase 2; PCP-2; Protein-tyrosine phosphatase J; PTP-J; hPTP-J; Protein-tyrosine phosphatase pi; PTP pi; Protein-tyrosine phosphatase receptor omicron; PTP-RO; Receptor-type protein-tyrosine phosphatase psi; R-PTP-psi; Precursor;)
genome : 29,563,028 - 29,653,325 (90,298)
query : 1 - 5,583 (5,583/5,593)
30 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 16, plas 5, E.R. 4, pero 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000346)
HIX0000346
HIT000355059 (
ENST00000373779
)
(Receptor-type tyrosine-protein phosphatase U; R-PTP-U; EC=3.1.3.48; Pancreatic carcinoma phosphatase 2; PCP-2; Protein-tyrosine phosphatase J; PTP-J; hPTP-J; Protein-tyrosine phosphatase pi; PTP pi; Protein-tyrosine phosphatase receptor omicron; PTP-RO; Receptor-type protein-tyrosine phosphatase psi; R-PTP-psi; Precursor;)
genome : 29,563,028 - 29,653,312 (90,285)
query : 1 - 5,579 (5,579/5,579)
30 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 16, plas 5, E.R. 4, pero 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000346)
HIX0000346
HIT000307163 (
ENST00000345512
)
(Receptor-type tyrosine-protein phosphatase U; R-PTP-U; EC=3.1.3.48; Pancreatic carcinoma phosphatase 2; PCP-2; Protein-tyrosine phosphatase J; PTP-J; hPTP-J; Protein-tyrosine phosphatase pi; PTP pi; Protein-tyrosine phosphatase receptor omicron; PTP-RO; Receptor-type protein-tyrosine phosphatase psi; R-PTP-psi; Precursor;)
genome : 29,563,028 - 29,652,173 (89,146)
query : 1 - 4,470 (4,470/4,470)
31 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 16.5, extr_plas 11.5, plas 5.5, pero 4, E.R. 3,
lyso 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000346)
HIX0000346
HIT000221226
(
U73727
)
(Receptor-type tyrosine-protein phosphatase U; R-PTP-U; EC=3.1.3.48; Pancreatic carcinoma phosphatase 2; PCP-2; Protein-tyrosine phosphatase J; PTP-J; hPTP-J; Protein-tyrosine phosphatase pi; PTP pi; Protein-tyrosine phosphatase receptor omicron; PTP-RO; Receptor-type protein-tyrosine phosphatase psi; R-PTP-psi; Precursor;)
genome : 29,563,033 - 29,653,312 (90,280)
query : 1 - 5,570 (5,570/5,589)
30 exons
identity = 0.998
5'(0.970;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.973;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.994;1.000;1.000;1.000;
1.000;0.999)3'
coverage = 1.000
EC number :
EC 3.1.3.48
InterPro :
IPR000242 : Protein-tyrosine phosphatase, receptor/non-receptor type
IPR000387 : Protein-tyrosine/Dual specificity phosphatase
IPR000998 : MAM domain
IPR003961 : Fibronectin type III
IPR016130 : Protein-tyrosine phosphatase, active site
IPR029021 : Protein-tyrosine phosphatase-like
GO :
0004725 : Molecular Function : protein tyrosine phosphatase activity
0005515 : Molecular Function : protein binding
0006470 : Biological Process : protein dephosphorylation
0016020 : Cellular Component : membrane
0016311 : Biological Process : dephosphorylation
0016791 : Molecular Function : phosphatase activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 16, plas 5, E.R. 4, pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000346)
HIX0000346
HIT000123649 (
ENST00000323874
)
(Receptor-type tyrosine-protein phosphatase U; R-PTP-U; EC=3.1.3.48; Pancreatic carcinoma phosphatase 2; PCP-2; Protein-tyrosine phosphatase J; PTP-J; hPTP-J; Protein-tyrosine phosphatase pi; PTP pi; Protein-tyrosine phosphatase receptor omicron; PTP-RO; Receptor-type protein-tyrosine phosphatase psi; R-PTP-psi; Precursor;)
genome : 29,563,047 - 29,653,313 (90,267)
query : 1 - 5,579 (5,579/5,579)
31 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 16, plas 5, E.R. 4, pero 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000346)
HIX0000346
HIT000310802 (
ENST00000356870
)
(Receptor-type tyrosine-protein phosphatase U; R-PTP-U; EC=3.1.3.48; Pancreatic carcinoma phosphatase 2; PCP-2; Protein-tyrosine phosphatase J; PTP-J; hPTP-J; Protein-tyrosine phosphatase pi; PTP pi; Protein-tyrosine phosphatase receptor omicron; PTP-RO; Receptor-type protein-tyrosine phosphatase psi; R-PTP-psi; Precursor;)
genome : 29,563,047 - 29,653,313 (90,267)
query : 1 - 5,579 (5,579/5,579)
31 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 16, plas 5, pero 5, E.R. 3, lyso 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000346)
HIX0000346
HIT000435519
(
BC146655
)
Representative transcript
(Receptor-type tyrosine-protein phosphatase U; R-PTP-U; EC=3.1.3.48; Pancreatic carcinoma phosphatase 2; PCP-2; Protein-tyrosine phosphatase J; PTP-J; hPTP-J; Protein-tyrosine phosphatase pi; PTP pi; Protein-tyrosine phosphatase receptor omicron; PTP-RO; Receptor-type protein-tyrosine phosphatase psi; R-PTP-psi; Precursor;)
genome : 29,563,061 - 29,653,325 (90,265)
query : 1 - 5,550 (5,550/5,595)
30 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.995;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.999)3'
coverage = 1.000
EC number :
EC 3.1.3.48
InterPro :
IPR000242 : Protein-tyrosine phosphatase, receptor/non-receptor type
IPR000387 : Protein-tyrosine/Dual specificity phosphatase
IPR000998 : MAM domain
IPR003961 : Fibronectin type III
IPR016130 : Protein-tyrosine phosphatase, active site
IPR029021 : Protein-tyrosine phosphatase-like
GO :
0004725 : Molecular Function : protein tyrosine phosphatase activity
0005515 : Molecular Function : protein binding
0006470 : Biological Process : protein dephosphorylation
0016020 : Cellular Component : membrane
0016311 : Biological Process : dephosphorylation
0016791 : Molecular Function : phosphatase activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 16, plas 5, E.R. 4, pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000346)
Ortholog candidate ( ->
Evola
)
Gallus
sp. (Chicken) : AY147868
Danio
sp. (Zebrafish) : AY555586
Canis
sp. (Dog) : ENSCAFT00000018459
Danio
sp. (Zebrafish) : ENSDART00000078970
Macaca
sp. (Macaque) : ENSMMUT00000021972
Oryzias
sp. (Medaka) : ENSORLT00000010472
Tetraodon
sp. (Tetraodon) : GSTENT00006126001
Tetraodon
sp. (Tetraodon) : GSTENT00018351001
Takifugu
sp. (Fugu) : SINFRUT00000142857
Takifugu
sp. (Fugu) : SINFRUT00000149400
Mus
sp. (Mouse) : U55057
Rattus
sp. (Rat) : U66566
Monodelphis
sp. (Opossum) : XM_001373846
Equus
sp. (Horse) : XM_001916918
Pan
sp. (Chimpanzee) : XM_513263
Bos
sp. (Cow) : XM_865457
HIX0000346
HIT000525960 (
ENST00000428026
)
(Receptor-type tyrosine-protein phosphatase U; R-PTP-U; EC=3.1.3.48; Pancreatic carcinoma phosphatase 2; PCP-2; Protein-tyrosine phosphatase J; PTP-J; hPTP-J; Protein-tyrosine phosphatase pi; PTP pi; Protein-tyrosine phosphatase receptor omicron; PTP-RO; Receptor-type protein-tyrosine phosphatase psi; R-PTP-psi; Precursor;)
genome : 29,563,061 - 29,653,325 (90,265)
query : 1 - 5,550 (5,550/5,550)
30 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 16, plas 5, E.R. 4, pero 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000346)
HIX0000346
HIT000324929
(
X95712
)
(Protein-tyrosine phosphatase, receptor/non-receptor type domain containing protein.)
genome : 29,563,076 - 29,652,173 (89,098)
query : 1 - 4,389 (4,389/4,389)
31 exons
identity = 0.976
5'(0.916;0.961;0.930;0.976;0.974;0.955;0.993;
0.990;1.000;0.960;0.981;0.978;1.000;1.000;
1.000;0.930;0.990;1.000;1.000;1.000;0.990;
0.992;0.987;0.993;1.000;0.989;1.000;1.000;
0.994;0.942;0.952)3'
coverage = 1.000
InterPro :
IPR000242 : Protein-tyrosine phosphatase, receptor/non-receptor type
IPR000387 : Protein-tyrosine/Dual specificity phosphatase
IPR003595 : Protein-tyrosine phosphatase, catalytic
IPR016130 : Protein-tyrosine phosphatase, active site
IPR029021 : Protein-tyrosine phosphatase-like
GO :
0004725 : Molecular Function : protein tyrosine phosphatase activity
0006470 : Biological Process : protein dephosphorylation
0016311 : Biological Process : dephosphorylation
0016791 : Molecular Function : phosphatase activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 15.5, cyto_mito 9.5, plas 7, cyto 2.5, nucl 2,
lyso 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000346)
HIX0000346
HIT000221138
(
U71075
)
(Receptor-type tyrosine-protein phosphatase U; R-PTP-U; EC=3.1.3.48; Pancreatic carcinoma phosphatase 2; PCP-2; Protein-tyrosine phosphatase J; PTP-J; hPTP-J; Protein-tyrosine phosphatase pi; PTP pi; Protein-tyrosine phosphatase receptor omicron; PTP-RO; Receptor-type protein-tyrosine phosphatase psi; R-PTP-psi; Precursor;)
genome : 29,563,151 - 29,653,181 (90,031)
query : 1 - 5,331 (5,331/5,333)
31 exons
identity = 0.993
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.990;
0.994;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.979;1.000;1.000;1.000;1.000;1.000;
1.000;0.994;1.000;1.000;1.000;0.986;1.000;
1.000;0.993;0.980)3'
coverage = 1.000
EC number :
EC 3.1.3.48
InterPro :
IPR000242 : Protein-tyrosine phosphatase, receptor/non-receptor type
IPR000387 : Protein-tyrosine/Dual specificity phosphatase
IPR000998 : MAM domain
IPR003961 : Fibronectin type III
IPR016130 : Protein-tyrosine phosphatase, active site
IPR029021 : Protein-tyrosine phosphatase-like
GO :
0004725 : Molecular Function : protein tyrosine phosphatase activity
0005515 : Molecular Function : protein binding
0006470 : Biological Process : protein dephosphorylation
0016020 : Cellular Component : membrane
0016311 : Biological Process : dephosphorylation
0016791 : Molecular Function : phosphatase activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15, plas 6, pero 5, E.R. 3, lyso 3, cysk_plas 3,
cyto_plas 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000346)
HIX0000346
HIT000565110 (
ENST00000460170
)
(Receptor-type tyrosine-protein phosphatase U; R-PTP-U; EC=3.1.3.48; Pancreatic carcinoma phosphatase 2; PCP-2; Protein-tyrosine phosphatase J; PTP-J; hPTP-J; Protein-tyrosine phosphatase pi; PTP pi; Protein-tyrosine phosphatase receptor omicron; PTP-RO; Receptor-type protein-tyrosine phosphatase psi; R-PTP-psi; Precursor;)
genome : 29,563,151 - 29,653,181 (90,031)
query : 1 - 5,337 (5,337/5,337)
31 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 16, plas 5, pero 5, E.R. 3, lyso 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000346)
HIX0160185
HIT000506709 (
ENST00000408623
)
(Non-protein coding transcript.)
genome : 29,580,054 - 29,580,195 (142)
query : 1 - 142 (142/142)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0160185)
HIX0000346
HIT000328790
(
AB208855
)
(Receptor-type tyrosine-protein phosphatase U; R-PTP-U; EC=3.1.3.48; Pancreatic carcinoma phosphatase 2; PCP-2; Protein-tyrosine phosphatase J; PTP-J; hPTP-J; Protein-tyrosine phosphatase pi; PTP pi; Protein-tyrosine phosphatase receptor omicron; PTP-RO; Receptor-type protein-tyrosine phosphatase psi; R-PTP-psi; Precursor;)
genome : 29,585,979 - 29,653,311 (67,333)
query : 1 - 4,872 (4,872/4,872)
26 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.995;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
InterPro :
IPR000242 : Protein-tyrosine phosphatase, receptor/non-receptor type
IPR000387 : Protein-tyrosine/Dual specificity phosphatase
IPR003961 : Fibronectin type III
IPR016130 : Protein-tyrosine phosphatase, active site
IPR029021 : Protein-tyrosine phosphatase-like
GO :
0004725 : Molecular Function : protein tyrosine phosphatase activity
0005515 : Molecular Function : protein binding
0006470 : Biological Process : protein dephosphorylation
0016311 : Biological Process : dephosphorylation
0016791 : Molecular Function : phosphatase activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 12.5, cyto_nucl 10.5, nucl 7.5, mito 5, plas 3,
mito_pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000346)
HIX0000346
HIT000626233 (
ENST00000527027
)
(Receptor-type tyrosine-protein phosphatase U; R-PTP-U; EC=3.1.3.48; Pancreatic carcinoma phosphatase 2; PCP-2; Protein-tyrosine phosphatase J; PTP-J; hPTP-J; Protein-tyrosine phosphatase pi; PTP pi; Protein-tyrosine phosphatase receptor omicron; PTP-RO; Receptor-type protein-tyrosine phosphatase psi; R-PTP-psi; Precursor;)
genome : 29,586,693 - 29,602,197 (15,505)
query : 1 - 619 (619/619)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21.5, cyto_nucl 14.5, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000346)
HIX0000346
HIT000513534 (
ENST00000415600
)
(Receptor-type tyrosine-protein phosphatase U isoform 2 precursor.)
genome : 29,606,063 - 29,639,218 (33,156)
query : 1 - 1,590 (1,590/1,590)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 9, cyto 8, plas 5, cyto_nucl 5, cyto_pero 5,
cyto_golg 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000346)
HIX0000346
HIT000630513 (
ENST00000531385
)
(Receptor-type tyrosine-protein phosphatase U isoform 4 precursor.)
genome : 29,610,235 - 29,630,552 (20,318)
query : 1 - 737 (737/737)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 24, plas 4, mito 2, cysk_plas 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000346)
HIX0000346
HIT000625296 (
ENST00000526080
)
(Receptor-type tyrosine-protein phosphatase U; R-PTP-U; EC=3.1.3.48; Pancreatic carcinoma phosphatase 2; PCP-2; Protein-tyrosine phosphatase J; PTP-J; hPTP-J; Protein-tyrosine phosphatase pi; PTP pi; Protein-tyrosine phosphatase receptor omicron; PTP-RO; Receptor-type protein-tyrosine phosphatase psi; R-PTP-psi; Precursor;)
genome : 29,637,858 - 29,639,171 (1,314)
query : 1 - 424 (424/424)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000346)
HIX0000346
HIT000597031 (
ENST00000493601
)
(Receptor-type tyrosine-protein phosphatase U; R-PTP-U; EC=3.1.3.48; Pancreatic carcinoma phosphatase 2; PCP-2; Protein-tyrosine phosphatase J; PTP-J; hPTP-J; Protein-tyrosine phosphatase pi; PTP pi; Protein-tyrosine phosphatase receptor omicron; PTP-RO; Receptor-type protein-tyrosine phosphatase psi; R-PTP-psi; Precursor;)
genome : 29,644,272 - 29,651,810 (7,539)
query : 1 - 695 (695/695)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, cyto 4, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000346)
HIX0000346
HIT000019704
(
AK094849
)
(Receptor-type tyrosine-protein phosphatase kappa isoform b precursor.)
genome : 29,646,722 - 29,653,311 (6,590)
query : 1 - 1,705 (1,705/1,705)
6 exons
identity = 0.995
5'(0.998;1.000;1.000;1.000;1.000;0.886)3'
coverage = 1.000
EC number :
EC 3.1.3.48
InterPro :
IPR000242 : Protein-tyrosine phosphatase, receptor/non-receptor type
IPR000387 : Protein-tyrosine/Dual specificity phosphatase
IPR016130 : Protein-tyrosine phosphatase, active site
IPR029021 : Protein-tyrosine phosphatase-like
GO :
0004725 : Molecular Function : protein tyrosine phosphatase activity
0006470 : Biological Process : protein dephosphorylation
0016311 : Biological Process : dephosphorylation
0016791 : Molecular Function : phosphatase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 10, cyto 9, nucl 7, extr 5, E.R._mito 5,
mito_pero 5, cyto_golg 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000346)
HIX0000346
HIT000570219 (
ENST00000465525
)
(Receptor-type tyrosine-protein phosphatase U; R-PTP-U; EC=3.1.3.48; Pancreatic carcinoma phosphatase 2; PCP-2; Protein-tyrosine phosphatase J; PTP-J; hPTP-J; Protein-tyrosine phosphatase pi; PTP pi; Protein-tyrosine phosphatase receptor omicron; PTP-RO; Receptor-type protein-tyrosine phosphatase psi; R-PTP-psi; Precursor;)
genome : 29,646,722 - 29,653,311 (6,590)
query : 1 - 1,703 (1,703/1,703)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 10, cyto 9, nucl 7, extr 5, E.R._mito 5,
mito_pero 5, cyto_golg 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000346)
HIX0000346
HIT000092939
(
BC033131
)
(Receptor-type tyrosine-protein phosphatase mu; Protein-tyrosine phosphatase mu; R-PTP-mu; EC=3.1.3.48; Precursor;)
genome : 29,647,214 - 29,653,312 (6,099)
query : 1 - 1,746 (1,746/1,856)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
InterPro :
IPR000242 : Protein-tyrosine phosphatase, receptor/non-receptor type
IPR000387 : Protein-tyrosine/Dual specificity phosphatase
IPR016130 : Protein-tyrosine phosphatase, active site
IPR029021 : Protein-tyrosine phosphatase-like
GO :
0004725 : Molecular Function : protein tyrosine phosphatase activity
0006470 : Biological Process : protein dephosphorylation
0016311 : Biological Process : dephosphorylation
0016791 : Molecular Function : phosphatase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, nucl 4, cyto 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000346)
HIX0000346
HIT000596414 (
ENST00000492954
)
(Receptor-type tyrosine-protein phosphatase U; R-PTP-U; EC=3.1.3.48; Pancreatic carcinoma phosphatase 2; PCP-2; Protein-tyrosine phosphatase J; PTP-J; hPTP-J; Protein-tyrosine phosphatase pi; PTP pi; Protein-tyrosine phosphatase receptor omicron; PTP-RO; Receptor-type protein-tyrosine phosphatase psi; R-PTP-psi; Precursor;)
genome : 29,649,730 - 29,652,162 (2,433)
query : 1 - 625 (625/625)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, cyto 9, cyto_nucl 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000346)
HIX0029307
HIT000096430
(
BC040893
)
Representative transcript
(Hypothetical protein.)
genome : 29,656,132 - 29,676,626 (20,495)
query : 1 - 2,148 (2,148/2,180)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, nucl 4, cyto 4, cyto_nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0029307)
HIX0029307
HIT000515585 (
ENST00000417651
)
(Conserved hypothetical protein.)
genome : 29,656,132 - 29,676,626 (20,495)
query : 1 - 2,148 (2,148/2,148)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, nucl 4, cyto 4, cyto_nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0029307)
HIX0203622
HIT000455367_02
(
DQ588836
)
Representative transcript
(Non-protein coding transcript.)
genome : 29,731,170 - 29,731,199 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0203622)
HIX0203813
HIT000615256 (
ENST00000515851
)
(Conserved hypothetical protein.)
genome : 29,814,705 - 29,823,405 (8,701)
query : 1 - 349 (349/349)
2 exons
identity = 0.991
3'(1.000;0.981)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, cyto_nucl 15, nucl 10, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0203813)
HIX0160531
HIT000520572 (
ENST00000422638
)
(Hypothetical short protein.)
genome : 30,181,698 - 30,182,394 (697)
query : 1 - 498 (498/498)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, nucl 9, cyto 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0160531)
HIX0029340
HIT000097272
(
BC042538
)
Representative transcript
(Hypothetical protein.)
genome : 30,486,799 - 30,510,459 (23,661)
query : 1 - 1,519 (1,519/1,533)
7 exons
identity = 0.996
3'(0.996;1.000;1.000;1.000;1.000;0.991;0.983)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto_nucl 14, cyto 7, extr 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0029340)
HIX0029340
HIT000543114 (
ENST00000445180
)
(Hypothetical protein.)
genome : 30,486,799 - 30,510,459 (23,661)
query : 1 - 2,519 (2,519/2,519)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, nucl 12
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0029340)
HIX0161081
HIT000538980 (
ENST00000441046
)
(Hypothetical short protein.)
genome : 30,613,110 - 30,614,454 (1,345)
query : 1 - 551 (551/551)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16, cyto_nucl 14, cyto 10, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0161081)
HIX0160105
HIT000453507_09
(
DQ586976
)
Representative transcript
(Non-protein coding transcript.)
genome : 30,677,646 - 30,677,676 (31)
query : 1 - 31 (31/31)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0160105)
HIX0161133
HIT000540708 (
ENST00000442774
)
(Non-protein coding transcript.)
genome : 30,699,370 - 30,699,462 (93)
query : 1 - 93 (93/93)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0161133)
HIX0000342
HIT000201185 (
NM_004437
)
(Protein 4.1 isoform 6.)
genome : 29,213,603 - 29,446,558 (232,956)
query : 1 - 5,818 (5,818/5,823)
19 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, cyto_nucl 14.5, nucl 7, cysk 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000342)
HIX0000342
HIT000319979 (
NM_203342
)
(Protein 4.1 isoform 4.)
genome : 29,213,603 - 29,446,558 (232,956)
query : 1 - 5,994 (5,994/5,999)
21 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, cyto_nucl 13, nucl 4, cysk 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000342)
HIX0000342
HIT000319980 (
NM_203343
)
(Protein 4.1; P4.1; 4.1R; Band 4.1; EPB4.1;)
genome : 29,213,603 - 29,446,558 (232,956)
query : 1 - 5,689 (5,689/5,694)
17 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18.5, cyto_nucl 16, cyto 12.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000342)
HIX0000342
HIT000654216 (
NM_001166005
)
(Protein 4.1; P4.1; 4.1R; Band 4.1; EPB4.1;)
genome : 29,213,603 - 29,446,558 (232,956)
query : 1 - 5,956 (5,956/5,961)
21 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, cyto_nucl 16.5, cyto 11
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000342)
HIX0000342
HIT000654218 (
NM_001166007
)
(Protein 4.1 isoform 5.)
genome : 29,213,603 - 29,446,558 (232,956)
query : 1 - 5,777 (5,777/5,782)
18 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, cyto_nucl 13, nucl 6, cysk 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000342)
HIX0000342
HIT000329584
(
AB209649
)
(Protein 4.1 isoform 4.)
genome : 29,213,603 - 29,446,551 (232,949)
query : 1 - 5,770 (5,770/5,770)
18 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.995;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000299 : FERM domain
IPR000798 : Ezrin/radixin/moesin like
IPR007477 : SAB domain
IPR008379 : Band 4.1, C-terminal
IPR014352 : FERM/acyl-CoA-binding protein, 3-helical bundle
IPR014847 : FERM adjacent (FA)
IPR018979 : FERM, N-terminal
IPR018980 : FERM, C-terminal PH-like domain
IPR019747 : FERM conserved site
IPR019748 : FERM central domain
IPR019749 : Band 4.1 domain
IPR029071 : Ubiquitin-related domain
GO :
0003779 : Molecular Function : actin binding
0005198 : Molecular Function : structural molecule activity
0005737 : Cellular Component : cytoplasm
0005856 : Cellular Component : cytoskeleton
0008092 : Molecular Function : cytoskeletal protein binding
0019898 : Cellular Component : extrinsic component of membrane
0030866 : Biological Process : cortical actin cytoskeleton organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000342)
HIX0000342
HIT000135697 (
ENST00000343067
)
(Protein 4.1; P4.1; 4.1R; Band 4.1; EPB4.1;)
genome : 29,213,603 - 29,446,532 (232,930)
query : 1 - 5,930 (5,930/5,930)
21 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, cyto_nucl 16.5, cyto 11
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000342)
HIX0000342
HIT000310143 (
ENST00000356093
)
(Protein 4.1; P4.1; 4.1R; Band 4.1; EPB4.1;)
genome : 29,213,603 - 29,446,532 (232,930)
query : 1 - 5,831 (5,831/5,831)
19 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, cyto_nucl 16.5, cyto 11
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000342)
HIX0000342
HIT000481999 (
ENST00000398863
)
(Protein 4.1; P4.1; 4.1R; Band 4.1; EPB4.1;)
genome : 29,213,603 - 29,446,532 (232,930)
query : 1 - 5,639 (5,639/5,639)
17 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, cyto_nucl 16.5, cyto 11
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000342)
HIX0000342
HIT000194369
(
M14993
)
(Protein 4.1 isoform 6.)
genome : 29,213,636 - 29,443,626 (229,991)
query : 15 - 2,867 (2,853/2,867)
19 exons
identity = 0.994
5'(0.931;0.996;0.962;0.995;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.986)3'
coverage = 0.995
InterPro :
IPR000299 : FERM domain
IPR000798 : Ezrin/radixin/moesin like
IPR007477 : SAB domain
IPR008379 : Band 4.1, C-terminal
IPR014352 : FERM/acyl-CoA-binding protein, 3-helical bundle
IPR014847 : FERM adjacent (FA)
IPR018979 : FERM, N-terminal
IPR018980 : FERM, C-terminal PH-like domain
IPR019747 : FERM conserved site
IPR019748 : FERM central domain
IPR019749 : Band 4.1 domain
IPR029071 : Ubiquitin-related domain
GO :
0003779 : Molecular Function : actin binding
0005198 : Molecular Function : structural molecule activity
0005737 : Cellular Component : cytoplasm
0005856 : Cellular Component : cytoskeleton
0008092 : Molecular Function : cytoskeletal protein binding
0019898 : Cellular Component : extrinsic component of membrane
0030866 : Biological Process : cortical actin cytoskeleton organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, cyto_nucl 14.5, nucl 7, cysk 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000342)
HIX0000342
HIT000195981
(
M61733
)
Representative transcript
(Protein 4.1 isoform 4.)
genome : 29,213,636 - 29,443,626 (229,991)
query : 15 - 3,043 (3,029/3,043)
21 exons
identity = 0.995
5'(0.931;0.996;0.962;0.995;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.986)3'
coverage = 0.995
InterPro :
IPR000299 : FERM domain
IPR000798 : Ezrin/radixin/moesin like
IPR007477 : SAB domain
IPR008379 : Band 4.1, C-terminal
IPR014352 : FERM/acyl-CoA-binding protein, 3-helical bundle
IPR014847 : FERM adjacent (FA)
IPR018979 : FERM, N-terminal
IPR018980 : FERM, C-terminal PH-like domain
IPR019747 : FERM conserved site
IPR019748 : FERM central domain
IPR019749 : Band 4.1 domain
IPR029071 : Ubiquitin-related domain
GO :
0003779 : Molecular Function : actin binding
0005198 : Molecular Function : structural molecule activity
0005737 : Cellular Component : cytoplasm
0005856 : Cellular Component : cytoskeleton
0008092 : Molecular Function : cytoskeletal protein binding
0019898 : Cellular Component : extrinsic component of membrane
0030866 : Biological Process : cortical actin cytoskeleton organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, cyto_nucl 13, nucl 4, cysk 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000342)
Ortholog candidate ( ->
Evola
)
Bos
sp. (Cow) : AF222767
Canis
sp. (Dog) : AY553843
Rattus
sp. (Rat) : BC103731
Equus
sp. (Horse) : ENSECAT00000024392
Oryzias
sp. (Medaka) : ENSORLT00000008614
Oryzias
sp. (Medaka) : ENSORLT00000013599
Pongo
sp. (Orangutan) : ENSPPYT00000001942
Pan
sp. (Chimpanzee) : ENSPTRT00000044855
Tetraodon
sp. (Tetraodon) : GSTENT00004689001
Mus
sp. (Mouse) : L00919
Gallus
sp. (Chicken) : M16962
Takifugu
sp. (Fugu) : SINFRUT00000171770
Takifugu
sp. (Fugu) : SINFRUT00000179031
Monodelphis
sp. (Opossum) : XM_001373447
Danio
sp. (Zebrafish) : XM_001920426
Macaca
sp. (Macaque) : XR_014431
HIX0000342
HIT000307796 (
ENST00000349460
)
(Protein 4.1 isoform 4.)
genome : 29,213,636 - 29,443,626 (229,991)
query : 1 - 3,029 (3,029/3,029)
21 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, cyto_nucl 13, nucl 4, cysk 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000342)
HIX0000342
HIT000355080 (
ENST00000373800
)
(Protein 4.1 isoform 6.)
genome : 29,213,636 - 29,443,626 (229,991)
query : 1 - 2,853 (2,853/2,853)
19 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, cyto_nucl 14.5, nucl 7, cysk 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000342)
HIX0000342
HIT000191200
(
J03796
)
(Protein 4.1; P4.1; 4.1R; Band 4.1; EPB4.1;)
genome : 29,213,684 - 29,443,626 (229,943)
query : 1 - 2,677 (2,677/2,677)
17 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.990;
1.000;1.000;0.997)3'
coverage = 1.000
InterPro :
IPR000299 : FERM domain
IPR000798 : Ezrin/radixin/moesin like
IPR007477 : SAB domain
IPR008379 : Band 4.1, C-terminal
IPR014352 : FERM/acyl-CoA-binding protein, 3-helical bundle
IPR014847 : FERM adjacent (FA)
IPR018980 : FERM, C-terminal PH-like domain
IPR019747 : FERM conserved site
IPR019748 : FERM central domain
IPR019749 : Band 4.1 domain
IPR029071 : Ubiquitin-related domain
GO :
0003779 : Molecular Function : actin binding
0005198 : Molecular Function : structural molecule activity
0005737 : Cellular Component : cytoplasm
0005856 : Cellular Component : cytoskeleton
0008092 : Molecular Function : cytoskeletal protein binding
0019898 : Cellular Component : extrinsic component of membrane
0030866 : Biological Process : cortical actin cytoskeleton organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18.5, cyto_nucl 16, cyto 12.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000342)
HIX0000342
HIT000307470 (
ENST00000347529
)
(Protein 4.1; P4.1; 4.1R; Band 4.1; EPB4.1;)
genome : 29,213,684 - 29,443,626 (229,943)
query : 1 - 2,676 (2,676/2,676)
17 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18.5, cyto_nucl 16, cyto 12.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000342)
HIX0000342
HIT000355078 (
ENST00000373798
)
(Protein 4.1; P4.1; 4.1R; Band 4.1; EPB4.1;)
genome : 29,220,253 - 29,446,553 (226,301)
query : 1 - 5,928 (5,928/5,928)
21 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, cyto_nucl 16.5, cyto 11
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000342)
HIX0000342
HIT000265929
(
BC081539
)
(Protein 4.1; P4.1; 4.1R; Band 4.1; EPB4.1;)
genome : 29,241,214 - 29,446,552 (205,339)
query : 220 - 6,016 (5,797/6,031)
19 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.995;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.990;0.998)3'
coverage = 0.966
InterPro :
IPR000299 : FERM domain
IPR000798 : Ezrin/radixin/moesin like
IPR007477 : SAB domain
IPR008379 : Band 4.1, C-terminal
IPR014352 : FERM/acyl-CoA-binding protein, 3-helical bundle
IPR014847 : FERM adjacent (FA)
IPR018979 : FERM, N-terminal
IPR018980 : FERM, C-terminal PH-like domain
IPR019747 : FERM conserved site
IPR019748 : FERM central domain
IPR019749 : Band 4.1 domain
IPR029071 : Ubiquitin-related domain
GO :
0003779 : Molecular Function : actin binding
0005198 : Molecular Function : structural molecule activity
0005737 : Cellular Component : cytoplasm
0005856 : Cellular Component : cytoskeleton
0008092 : Molecular Function : cytoskeletal protein binding
0019898 : Cellular Component : extrinsic component of membrane
0030866 : Biological Process : cortical actin cytoskeleton organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, cyto_nucl 16.5, cyto 11
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000342)
HIX0000342
HIT000654217 (
NM_001166006
)
(Protein 4.1 isoform 3.)
genome : 29,241,088 - 29,391,732 (150,645)
query : 1 - 2,404 (2,404/2,423)
15 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, cyto_nucl 16, cyto 10
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000342)
HIX0000342
HIT000052134
(
BC039079
)
(Protein 4.1 isoform 3.)
genome : 29,241,091 - 29,391,732 (150,642)
query : 1 - 2,401 (2,401/2,486)
15 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
InterPro :
IPR000299 : FERM domain
IPR000798 : Ezrin/radixin/moesin like
IPR007477 : SAB domain
IPR014352 : FERM/acyl-CoA-binding protein, 3-helical bundle
IPR014847 : FERM adjacent (FA)
IPR018979 : FERM, N-terminal
IPR018980 : FERM, C-terminal PH-like domain
IPR019747 : FERM conserved site
IPR019748 : FERM central domain
IPR019749 : Band 4.1 domain
IPR029071 : Ubiquitin-related domain
GO :
0005737 : Cellular Component : cytoplasm
0005856 : Cellular Component : cytoskeleton
0008092 : Molecular Function : cytoskeletal protein binding
0019898 : Cellular Component : extrinsic component of membrane
0030866 : Biological Process : cortical actin cytoskeleton organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, cyto_nucl 16, cyto 10
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000342)
HIX0000342
HIT000355077 (
ENST00000373797
)
(Protein 4.1 isoform 3.)
genome : 29,241,091 - 29,391,733 (150,643)
query : 1 - 2,402 (2,402/2,402)
15 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, cyto_nucl 16, cyto 10
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000342)
HIX0000342
HIT000071965
(
AF156225
)
(Protein 4.1; P4.1; 4.1R; Band 4.1; EPB4.1;)
genome : 29,313,950 - 29,442,309 (128,360)
query : 1 - 2,595 (2,595/2,595)
19 exons
identity = 0.998
5'(0.996;0.995;0.990;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.984;
0.994;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000299 : FERM domain
IPR000798 : Ezrin/radixin/moesin like
IPR007477 : SAB domain
IPR008379 : Band 4.1, C-terminal
IPR014352 : FERM/acyl-CoA-binding protein, 3-helical bundle
IPR014847 : FERM adjacent (FA)
IPR018979 : FERM, N-terminal
IPR018980 : FERM, C-terminal PH-like domain
IPR019747 : FERM conserved site
IPR019748 : FERM central domain
IPR019749 : Band 4.1 domain
IPR029071 : Ubiquitin-related domain
GO :
0003779 : Molecular Function : actin binding
0005198 : Molecular Function : structural molecule activity
0005737 : Cellular Component : cytoplasm
0005856 : Cellular Component : cytoskeleton
0008092 : Molecular Function : cytoskeletal protein binding
0019898 : Cellular Component : extrinsic component of membrane
0030866 : Biological Process : cortical actin cytoskeleton organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, cyto_nucl 16.5, cyto 11
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000342)
HIX0000342
HIT000335392
(
BC096104
)
(Protein 4.1 isoform 2.)
genome : 29,314,216 - 29,443,906 (129,691)
query : 1 - 2,431 (2,431/2,434)
15 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.990;
1.000)3'
coverage = 0.999
InterPro :
IPR000299 : FERM domain
IPR000798 : Ezrin/radixin/moesin like
IPR007477 : SAB domain
IPR008379 : Band 4.1, C-terminal
IPR014352 : FERM/acyl-CoA-binding protein, 3-helical bundle
IPR014847 : FERM adjacent (FA)
IPR018980 : FERM, C-terminal PH-like domain
IPR019747 : FERM conserved site
IPR019748 : FERM central domain
IPR019749 : Band 4.1 domain
IPR029071 : Ubiquitin-related domain
GO :
0003779 : Molecular Function : actin binding
0005198 : Molecular Function : structural molecule activity
0005737 : Cellular Component : cytoplasm
0005856 : Cellular Component : cytoskeleton
0008092 : Molecular Function : cytoskeletal protein binding
0019898 : Cellular Component : extrinsic component of membrane
0030866 : Biological Process : cortical actin cytoskeleton organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 18.3333, cyto_golg 11.8333,
nucl 10.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000342)
HIX0000342
HIT000335393
(
BC096105
)
(Protein 4.1 isoform 2.)
genome : 29,314,216 - 29,443,906 (129,691)
query : 1 - 2,812 (2,812/2,815)
18 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.990;0.998)3'
coverage = 0.999
InterPro :
IPR000299 : FERM domain
IPR000798 : Ezrin/radixin/moesin like
IPR007477 : SAB domain
IPR008379 : Band 4.1, C-terminal
IPR014352 : FERM/acyl-CoA-binding protein, 3-helical bundle
IPR014847 : FERM adjacent (FA)
IPR018979 : FERM, N-terminal
IPR018980 : FERM, C-terminal PH-like domain
IPR019747 : FERM conserved site
IPR019748 : FERM central domain
IPR019749 : Band 4.1 domain
IPR029071 : Ubiquitin-related domain
GO :
0003779 : Molecular Function : actin binding
0005198 : Molecular Function : structural molecule activity
0005737 : Cellular Component : cytoplasm
0005856 : Cellular Component : cytoskeleton
0008092 : Molecular Function : cytoskeletal protein binding
0019898 : Cellular Component : extrinsic component of membrane
0030866 : Biological Process : cortical actin cytoskeleton organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, cyto_nucl 16.5, cyto 11
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000342)
HIX0000342
HIT000340569
(
BC113841
)
(Protein 4.1; P4.1; 4.1R; Band 4.1; EPB4.1;)
genome : 29,314,216 - 29,443,906 (129,691)
query : 1 - 2,620 (2,620/2,620)
16 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.998)3'
coverage = 1.000
InterPro :
IPR000299 : FERM domain
IPR000798 : Ezrin/radixin/moesin like
IPR007477 : SAB domain
IPR008379 : Band 4.1, C-terminal
IPR014352 : FERM/acyl-CoA-binding protein, 3-helical bundle
IPR014847 : FERM adjacent (FA)
IPR018979 : FERM, N-terminal
IPR018980 : FERM, C-terminal PH-like domain
IPR019747 : FERM conserved site
IPR019748 : FERM central domain
IPR019749 : Band 4.1 domain
IPR029071 : Ubiquitin-related domain
GO :
0003779 : Molecular Function : actin binding
0005198 : Molecular Function : structural molecule activity
0005737 : Cellular Component : cytoplasm
0005856 : Cellular Component : cytoskeleton
0008092 : Molecular Function : cytoskeletal protein binding
0019898 : Cellular Component : extrinsic component of membrane
0030866 : Biological Process : cortical actin cytoskeleton organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto_nucl 16.5, cyto 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000342)
HIX0000342
HIT000340678
(
BC114450
)
(Protein 4.1 isoform 2.)
genome : 29,314,216 - 29,443,906 (129,691)
query : 1 - 2,812 (2,812/2,812)
18 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.990;1.000)3'
coverage = 1.000
InterPro :
IPR000299 : FERM domain
IPR000798 : Ezrin/radixin/moesin like
IPR007477 : SAB domain
IPR008379 : Band 4.1, C-terminal
IPR014352 : FERM/acyl-CoA-binding protein, 3-helical bundle
IPR014847 : FERM adjacent (FA)
IPR018979 : FERM, N-terminal
IPR018980 : FERM, C-terminal PH-like domain
IPR019747 : FERM conserved site
IPR019748 : FERM central domain
IPR019749 : Band 4.1 domain
IPR029071 : Ubiquitin-related domain
GO :
0003779 : Molecular Function : actin binding
0005198 : Molecular Function : structural molecule activity
0005737 : Cellular Component : cytoplasm
0005856 : Cellular Component : cytoskeleton
0008092 : Molecular Function : cytoskeletal protein binding
0019898 : Cellular Component : extrinsic component of membrane
0030866 : Biological Process : cortical actin cytoskeleton organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, cyto_nucl 16.5, cyto 11
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000342)
HIX0029541
pHIT000097469 ( pHIT000097469 )
(Conserved hypothetical protein.)
genome : 29,215,766 - 29,309,122 (93,357)
query : 1 - 957 (957/957)
4 exons
InterPro :
IPR001141 : Ribosomal protein L27e
IPR008991 : Translation protein SH3-like domain
IPR014722 : Ribosomal protein L2 domain 2
GO :
0003735 : Molecular Function : structural constituent of ribosome
0005622 : Cellular Component : intracellular
0005840 : Cellular Component : ribosome
0006412 : Biological Process : translation
SOSUI :
SOLUBLE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0029541)
CAGE tag :
T01F01BBD1CD
HIX0029541
pHIT000000896 ( pHIT000000896 )
(Conserved hypothetical protein.)
genome : 29,308,835 - 29,309,122 (288)
query : 1 - 288 (288/288)
1 exon
InterPro :
IPR001141 : Ribosomal protein L27e
IPR008991 : Translation protein SH3-like domain
IPR014722 : Ribosomal protein L2 domain 2
GO :
0003735 : Molecular Function : structural constituent of ribosome
0005622 : Cellular Component : intracellular
0005840 : Cellular Component : ribosome
0006412 : Biological Process : translation
SOSUI :
SOLUBLE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0029541)
CAGE tag :
H05BA65A1202,H06BA48O0903,H10BB14H1604
H21BA35K0808,H21BB73H0208
AL009181.1
29200001-29285103 F -
NCBI
AL138785.8
29285104-29392712 F +
NCBI
AL357500.17
29392713-29503104 F +
NCBI
AL590729.14
29503105-29572278 F +
NCBI
AL645859.10
29572279-29610534 F +
NCBI
AL049570.11
29610535-29728919 F +
NCBI
AL139151.13
29728920-29805322 F +
NCBI
AL671862.6
29805323-29867402 F +
NCBI
BX293539.5
29867403-29871551 F +
NCBI
CR589921.2
29871552-29878082 F +
NCBI
150000
29878083-30028082 N
BX649418.3
30028083-30063425 F +
NCBI
AC092265.3
30063426-30190656 F +
NCBI
AL954719.18
30190657-30220416 F +
NCBI
AL645944.11
30220417-30409663 F +
NCBI
AL662906.4
30409664-30541691 F +
NCBI
AL137076.6
30541692-30628950 F -
NCBI
AL109740.27
30628951-30692531 F +
NCBI
AL021921.1
30692532-30800000 F -
NCBI