bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0001553
HIT000483848 (
ENST00000400959
)
(TRAF3-interacting JNK-activating modulator; TRAF3-interacting protein 3;)
genome : 209,929,377 - 209,953,000 (23,624)
query : 1 - 1,854 (1,854/1,854)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 24.5, cyto_nucl 16, nucl 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001553)
HIX0001553
HIT000209814 (
NM_025228
)
(TRAF3-interacting JNK-activating modulator; TRAF3-interacting protein 3;)
genome : 209,929,394 - 209,955,667 (26,274)
query : 1 - 2,250 (2,250/2,267)
17 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
pero 11, cyto 10.5, cyto_mito 7, nucl 4, plas 2.5,
mito 2.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001553)
HIX0001553
HIT000042665
(
AK122792
)
Representative transcript
(TRAF3-interacting JNK-activating modulator; TRAF3-interacting protein 3;)
genome : 209,929,394 - 209,955,660 (26,267)
query : 1 - 2,243 (2,243/2,243)
17 exons
identity = 0.998
5'(0.996;1.000;0.995;1.000;1.000;1.000;1.000;
0.990;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
pero 11, cyto 10.5, cyto_mito 7, nucl 4, plas 2.5,
mito 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001553)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK031400
Rattus
sp. (Rat) : BC089843
Bos
sp. (Cow) : BC119991
Canis
sp. (Dog) : ENSCAFT00000018964
Equus
sp. (Horse) : ENSECAT00000011992
Monodelphis
sp. (Opossum) : ENSMODT00000003122
Pongo
sp. (Orangutan) : ENSPPYT00000000280
Macaca
sp. (Macaque) : XM_001110111
Pan
sp. (Chimpanzee) : XM_001168531
Gallus
sp. (Chicken) : XM_417989
HIX0001553
HIT000348305 (
ENST00000367025
)
(TRAF3-interacting JNK-activating modulator; TRAF3-interacting protein 3;)
genome : 209,929,394 - 209,955,660 (26,267)
query : 1 - 2,243 (2,243/2,243)
17 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
pero 11, cyto 10.5, cyto_mito 7, nucl 4, plas 2.5,
mito 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001553)
HIX0001553
HIT000057097
(
BX648450
)
(TRAF3-interacting JNK-activating modulator; TRAF3-interacting protein 3;)
genome : 209,929,399 - 209,955,665 (26,267)
query : 2 - 2,244 (2,243/2,330)
17 exons
identity = 1.000
5'(1.000;1.000;0.998;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
pero 12, cyto 9.5, cyto_mito 6.5, nucl 3, plas 2.5,
mito 2.5, extr_plas 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001553)
HIX0001553
HIT000339477
(
BC110302
)
(TRAF3-interacting JNK-activating modulator; TRAF3-interacting protein 3;)
genome : 209,929,411 - 209,953,000 (23,590)
query : 1 - 1,860 (1,860/1,925)
13 exons
identity = 0.997
5'(0.996;1.000;0.995;1.000;1.000;1.000;1.000;
0.990;1.000;0.993;1.000;1.000;1.000)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 26, cyto_nucl 16.5, nucl 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001553)
HIX0001553
HIT000582468 (
ENST00000478359
)
(TRAF3-interacting JNK-activating modulator; TRAF3-interacting protein 3;)
genome : 209,929,411 - 209,953,000 (23,590)
query : 1 - 1,860 (1,860/1,860)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 26, cyto_nucl 16.5, nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001553)
HIX0001553
HIT000495179
(
AK300555
)
(TRAF3-interacting JNK-activating modulator; TRAF3-interacting protein 3;)
genome : 209,929,481 - 209,948,940 (19,460)
query : 1 - 1,303 (1,303/1,303)
11 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.986;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 27, cyto_nucl 18, nucl 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001553)
HIX0001553
HIT000573227 (
ENST00000468672
)
(TRAF3-interacting JNK-activating modulator; TRAF3-interacting protein 3;)
genome : 209,929,481 - 209,935,941 (6,461)
query : 1 - 570 (570/570)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14, extr 8, mito 5, cyto 4, extr_plas 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001553)
HIX0001553
HIT000583842 (
ENST00000479796
)
(Conserved hypothetical protein.)
genome : 209,929,481 - 209,933,462 (3,982)
query : 1 - 540 (540/540)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto_nucl 10.8333, nucl 9, cyto 6.5,
cyto_pero 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001553)
HIX0001553
HIT000384892
(
AK225762
)
(TRAF3-interacting JNK-activating modulator; TRAF3-interacting protein 3;)
genome : 209,929,485 - 209,955,655 (26,171)
query : 4 - 2,150 (2,147/2,188)
17 exons
identity = 0.998
5'(0.988;1.000;0.995;0.993;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 0.999
SOSUI :
MEMBRANE PROTEIN
PSORT :
pero 11, cyto 9.5, cyto_mito 6, plas 4.5, nucl 4,
extr_plas 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001553)
HIX0001553
HIT000431621
(
AK312755
)
(TRAF3-interacting JNK-activating modulator; TRAF3-interacting protein 3;)
genome : 209,929,483 - 209,955,493 (26,011)
query : 1 - 1,987 (1,987/1,987)
17 exons
identity = 0.997
5'(1.000;1.000;0.998;1.000;1.000;0.960;1.000;
0.990;1.000;0.993;1.000;0.993;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
pero 11, cyto 10.5, cyto_mito 6.5, nucl 4, plas 3.5,
extr_plas 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001553)
HIX0001553
HIT000250063
(
AL049667
)
(TRAF3-interacting JNK-activating modulator; TRAF3-interacting protein 3;)
genome : 209,929,524 - 209,955,665 (26,142)
query : 1 - 2,058 (2,058/2,058)
17 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
pero 11, cyto 10.5, cyto_mito 7, nucl 4, plas 2.5,
mito 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001553)
HIX0001553
HIT000348306 (
ENST00000367026
)
(TRAF3-interacting JNK-activating modulator; TRAF3-interacting protein 3;)
genome : 209,929,524 - 209,955,665 (26,142)
query : 1 - 2,058 (2,058/2,058)
17 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
pero 11, cyto 10.5, cyto_mito 7, nucl 4, plas 2.5,
mito 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001553)
HIX0001553
HIT000348304 (
ENST00000367024
)
(TRAF3-interacting JNK-activating modulator; TRAF3-interacting protein 3;)
genome : 209,931,843 - 209,955,652 (23,810)
query : 1 - 2,331 (2,331/2,331)
17 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
pero 11, cyto 10.5, cyto_mito 7, nucl 4, plas 2.5,
mito 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001553)
HIX0001553
HIT000045474
(
AK125601
)
(TRAF3-interacting JNK-activating modulator; TRAF3-interacting protein 3;)
genome : 209,931,843 - 209,955,492 (23,650)
query : 1 - 2,171 (2,171/2,171)
17 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.993;1.000;0.993;1.000;1.000;
1.000;0.991;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
pero 11, cyto 10.5, cyto_mito 7, nucl 4, plas 2.5,
mito 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001553)
HIX0001553
HIT000390207
(
BC130417
)
(TRAF3-interacting JNK-activating modulator; TRAF3-interacting protein 3;)
genome : 209,932,421 - 209,955,545 (23,125)
query : 1 - 1,825 (1,825/1,825)
16 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.993;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
pero 11, cyto 10.5, cyto_mito 7, nucl 4, plas 2.5,
mito 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001553)
HIX0001553
HIT000502569
(
BC144139
)
(TRAF3-interacting JNK-activating modulator; TRAF3-interacting protein 3;)
genome : 209,932,421 - 209,955,545 (23,125)
query : 1 - 1,825 (1,825/1,825)
16 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.993;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
pero 11, cyto 10.5, cyto_mito 7, nucl 4, plas 2.5,
mito 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001553)
HIX0001553
HIT000102210 (
ENST00000010338
)
(TRAF3-interacting JNK-activating modulator; TRAF3-interacting protein 3;)
genome : 209,933,385 - 209,955,664 (22,280)
query : 1 - 1,767 (1,767/1,767)
15 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
pero 11, cyto 10.5, cyto_mito 7, nucl 4, plas 2.5,
mito 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001553)
HIX0001553
HIT000348303 (
ENST00000367023
)
(TRAF3-interacting JNK-activating modulator; TRAF3-interacting protein 3;)
genome : 209,941,833 - 209,953,001 (11,169)
query : 1 - 1,065 (1,065/1,065)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 14.5, nucl 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001553)
HIX0001553
HIT000046012
(
AK126139
)
(TRAF3-interacting JNK-activating modulator; TRAF3-interacting protein 3;)
genome : 209,941,940 - 209,952,998 (11,059)
query : 1 - 3,302 (3,302/3,302)
4 exons
identity = 0.999
5'(1.000;1.000;0.999;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12, extr 8, nucl 8, cyto_mito 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001553)
HIX0001553
HIT000580263 (
ENST00000476050
)
(TRAF3-interacting JNK-activating modulator; TRAF3-interacting protein 3;)
genome : 209,941,940 - 209,952,998 (11,059)
query : 1 - 3,302 (3,302/3,302)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, extr 9, cyto_mito 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001553)
HIX0001553
HIT000578785 (
ENST00000474496
)
(TRAF3-interacting JNK-activating modulator; TRAF3-interacting protein 3;)
genome : 209,941,950 - 209,950,766 (8,817)
query : 1 - 586 (586/586)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 14.5, nucl 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001553)
HIX0001553
HIT000590982 (
ENST00000487271
)
(TRAF3-interacting JNK-activating modulator; TRAF3-interacting protein 3;)
genome : 209,941,950 - 209,950,729 (8,780)
query : 1 - 499 (499/499)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 13, nucl 6.5, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001553)
HIX0001553
HIT000581578 (
ENST00000477431
)
(TRAF3-interacting JNK-activating modulator; TRAF3-interacting protein 3;)
genome : 209,941,960 - 209,955,658 (13,699)
query : 1 - 791 (791/791)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto 11
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001553)
HIX0001553
HIT000584577 (
ENST00000480569
)
(TRAF3-interacting JNK-activating modulator; TRAF3-interacting protein 3;)
genome : 209,946,293 - 209,955,668 (9,376)
query : 1 - 467 (467/467)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001553)
HIX0001553
HIT000592337 (
ENST00000488702
)
(TRAF3-interacting JNK-activating modulator; TRAF3-interacting protein 3;)
genome : 209,949,153 - 209,952,709 (3,557)
query : 1 - 566 (566/566)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 9, nucl 9, cyto 6, mito 6, cyto_mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001553)
HIX0001553
HIT000575803 (
ENST00000471368
)
(TRAF3-interacting JNK-activating modulator; TRAF3-interacting protein 3;)
genome : 209,950,784 - 209,955,665 (4,882)
query : 1 - 551 (551/551)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 12.5, nucl 9.5, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001553)
HIX0001553
HIT000017772
(
AK092905
)
(TRAF3-interacting JNK-activating modulator; TRAF3-interacting protein 3;)
genome : 209,951,712 - 209,955,652 (3,941)
query : 1 - 2,601 (2,601/2,601)
3 exons
identity = 0.999
5'(0.999;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 16, plas 7, extr 5, nucl 2, golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001553)
HIX0001553
HIT000565245 (
ENST00000460314
)
(TRAF3-interacting JNK-activating modulator; TRAF3-interacting protein 3;)
genome : 209,951,712 - 209,955,652 (3,941)
query : 1 - 2,601 (2,601/2,601)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 16, plas 7, extr 5, nucl 2, golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001553)
HIX0159943
HIT000006072
(
AK022798
)
Representative transcript
(TRAF3-interacting JNK-activating modulator; TRAF3-interacting protein 3;)
genome : 209,952,553 - 209,954,298 (1,746)
query : 1 - 1,746 (1,746/1,746)
1 exon
identity = 0.997
3'(0.997)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159943)
HIX0001553
HIT000572428 (
ENST00000467830
)
(TRAF3-interacting JNK-activating modulator; TRAF3-interacting protein 3;)
genome : 209,954,184 - 209,955,528 (1,345)
query : 1 - 748 (748/748)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 21, extr_plas 14, extr 5, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001553)
HIX0001555
HIT000052237
(
BC039719
)
(Protein of unknown function DUF4504 family protein.)
genome : 209,955,662 - 209,957,890 (2,229)
query : 1 - 1,561 (1,561/1,642)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 0.999
InterPro :
IPR027850 : Protein of unknown function DUF4504
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29, cyto_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001555)
HIX0001555
HIT000213752 (
NM_152485
)
(Protein of unknown function DUF4504 family protein.)
genome : 209,955,662 - 209,957,890 (2,229)
query : 1 - 1,561 (1,561/1,642)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29, cyto_nucl 16.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001555)
HIX0001555
HIT000014414
(
AK057807
)
Representative transcript
(Protein of unknown function DUF4504 family protein.)
genome : 209,955,661 - 209,957,904 (2,244)
query : 1 - 1,575 (1,575/1,575)
2 exons
identity = 0.999
3'(0.999;1.000)5'
coverage = 1.000
InterPro :
IPR027850 : Protein of unknown function DUF4504
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29, cyto_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001555)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : BC008515
Rattus
sp. (Rat) : BC085897
Danio
sp. (Zebrafish) : BC093235
Bos
sp. (Cow) : BC149736
Tetraodon
sp. (Tetraodon) : CR675021
Pongo
sp. (Orangutan) : CR857538
Equus
sp. (Horse) : ENSECAT00000003128
Monodelphis
sp. (Opossum) : ENSMODT00000037069
Takifugu
sp. (Fugu) : SINFRUT00000150782
Macaca
sp. (Macaque) : XM_001110409
Gallus
sp. (Chicken) : XM_001235152
Pan
sp. (Chimpanzee) : XM_514167
HIX0001555
HIT000113969 (
ENST00000294811
)
(Protein of unknown function DUF4504 family protein.)
genome : 209,955,661 - 209,957,904 (2,244)
query : 1 - 1,576 (1,576/1,576)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29, cyto_nucl 16.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001555)
HIX0001556
HIT000202762 (
NM_006147
)
(Interferon regulatory factor DNA-binding domain containing protein.)
genome : 209,958,968 - 209,979,520 (20,553)
query : 1 - 4,505 (4,505/4,505)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24, cyto_mito 14.3333, mito_pero 13.8333,
cyto 3.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001556)
HIX0001556
HIT000657286 (
NM_001206696
)
(Interferon regulatory factor-3 domain containing protein.)
genome : 209,958,968 - 209,979,520 (20,553)
query : 1 - 4,256 (4,256/4,256)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 18, cyto 8.5, cyto_nucl 6.5, nucl 3.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001556)
HIX0001556
HIT000348301 (
ENST00000367021
)
(Interferon regulatory factor DNA-binding domain containing protein.)
genome : 209,959,036 - 209,979,389 (20,354)
query : 1 - 4,306 (4,306/4,306)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24, cyto_mito 14.3333, mito_pero 13.8333,
cyto 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001556)
HIX0001556
HIT000528685 (
ENST00000430751
)
(Conserved hypothetical protein.)
genome : 209,960,324 - 209,961,038 (715)
query : 1 - 591 (591/591)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001556)
HIX0001556
HIT000062883
(
AF027292
)
(Interferon regulatory factor DNA-binding domain containing protein.)
genome : 209,961,262 - 209,975,381 (14,120)
query : 1 - 1,975 (1,975/1,976)
8 exons
identity = 0.999
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 0.999
InterPro :
IPR001346 : Interferon regulatory factor DNA-binding domain
IPR008984 : SMAD/FHA domain
IPR011991 : Winged helix-turn-helix DNA-binding domain
IPR017855 : SMAD domain-like
IPR019471 : Interferon regulatory factor-3
IPR019817 : Interferon regulatory factor, conserved site
GO :
0000975 : Molecular Function : regulatory region DNA binding
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0005515 : Molecular Function : protein binding
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24, cyto_mito 14.3333, mito_pero 13.8333,
cyto 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001556)
HIX0001556
HIT000036873
(
BC014852
)
Representative transcript
(Interferon regulatory factor 6; IRF-6;)
genome : 209,961,595 - 209,979,389 (17,795)
query : 1 - 1,747 (1,747/1,780)
9 exons
identity = 0.999
3'(0.997;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001346 : Interferon regulatory factor DNA-binding domain
IPR008984 : SMAD/FHA domain
IPR011991 : Winged helix-turn-helix DNA-binding domain
IPR017855 : SMAD domain-like
IPR019471 : Interferon regulatory factor-3
IPR019817 : Interferon regulatory factor, conserved site
GO :
0000975 : Molecular Function : regulatory region DNA binding
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0005515 : Molecular Function : protein binding
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24, cyto_mito 14.3333, mito_pero 13.8333,
cyto 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001556)
HIX0001556
HIT000491584
(
AK296960
)
(Interferon regulatory factor 6 isoform 2.)
genome : 209,961,697 - 209,979,465 (17,769)
query : 1 - 1,472 (1,472/1,472)
7 exons
identity = 0.999
3'(1.000;1.000;0.997;1.000;0.992;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR008984 : SMAD/FHA domain
IPR017855 : SMAD domain-like
IPR019471 : Interferon regulatory factor-3
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0005515 : Molecular Function : protein binding
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 19, cyto 7.5, cyto_nucl 6, nucl 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001556)
HIX0001556
HIT000641899 (
ENST00000542854
)
(Interferon regulatory factor-3 domain containing protein.)
genome : 209,961,697 - 209,979,465 (17,769)
query : 1 - 1,472 (1,472/1,472)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 18, cyto 8.5, cyto_nucl 6.5, nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001556)
HIX0001556
HIT000431723
(
AK312857
)
(Interferon regulatory factor 6; IRF-6;)
genome : 209,961,765 - 209,979,420 (17,656)
query : 1 - 1,608 (1,608/1,608)
9 exons
identity = 0.998
3'(0.996;1.000;0.997;1.000;1.000;1.000;1.000;
0.986;1.000)5'
coverage = 1.000
InterPro :
IPR001346 : Interferon regulatory factor DNA-binding domain
IPR008984 : SMAD/FHA domain
IPR011991 : Winged helix-turn-helix DNA-binding domain
IPR017855 : SMAD domain-like
IPR019471 : Interferon regulatory factor-3
IPR019817 : Interferon regulatory factor, conserved site
GO :
0000975 : Molecular Function : regulatory region DNA binding
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0005515 : Molecular Function : protein binding
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 19.5, cyto_mito 12, nucl 6, cyto 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001556)
HIX0001556
HIT000554248 (
ENST00000456314
)
(Interferon regulatory factor DNA-binding domain containing protein.)
genome : 209,964,071 - 209,975,511 (11,441)
query : 1 - 1,027 (1,027/1,027)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24, cyto_mito 15.1667, mito_pero 13.3333, cyto 5,
cyto_nucl 3.83333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001556)
HIX0001556
HIT000569432 (
ENST00000464698
)
(Interferon regulatory factor-3 domain containing protein.)
genome : 209,964,083 - 209,966,059 (1,977)
query : 1 - 596 (596/596)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, nucl 10
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001556)
HIX0001557
HIT000204766 (
NM_014388
)
(Digestive organ expansion factor homolog;)
genome : 210,001,312 - 210,030,909 (29,598)
query : 1 - 8,485 (8,485/8,505)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, mito 9, cyto 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001557)
HIX0001557
HIT000432927
(
AK314061
)
(Digestive organ expansion factor homolog.)
genome : 210,001,317 - 210,024,792 (23,476)
query : 1 - 2,398 (2,398/2,398)
12 exons
identity = 0.999
5'(1.000;1.000;0.996;0.995;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.996)3'
coverage = 1.000
InterPro :
IPR010678 : Digestive organ expansion factor, predicted
GO :
0005634 : Cellular Component : nucleus
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23.5, cyto_nucl 15, nucl 3.5, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001557)
HIX0001557
HIT000422410
(
AK289613
)
(Digestive organ expansion factor homolog;)
genome : 210,001,332 - 210,024,834 (23,503)
query : 1 - 2,390 (2,390/2,390)
12 exons
identity = 0.998
5'(1.000;0.975;0.996;0.994;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.997)3'
coverage = 1.000
InterPro :
IPR010678 : Digestive organ expansion factor, predicted
GO :
0005634 : Cellular Component : nucleus
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, mito 9, cyto 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001557)
HIX0001557
HIT000039683
(
BC022964
)
Representative transcript
(Digestive organ expansion factor homolog;)
genome : 210,001,352 - 210,025,095 (23,744)
query : 2 - 2,632 (2,631/2,647)
12 exons
identity = 1.000
5'(1.000;0.975;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR010678 : Digestive organ expansion factor, predicted
GO :
0005634 : Cellular Component : nucleus
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, mito 9, cyto 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001557)
Ortholog candidate ( ->
Evola
)
Gallus
sp. (Chicken) : AJ719771
Mus
sp. (Mouse) : AK147251
Danio
sp. (Zebrafish) : BC058062
Rattus
sp. (Rat) : BC087114
Bos
sp. (Cow) : BC134497
Canis
sp. (Dog) : ENSCAFT00000019053
Equus
sp. (Horse) : ENSECAT00000024003
Pongo
sp. (Orangutan) : ENSPPYT00000000277
Tetraodon
sp. (Tetraodon) : GSTENT00016977001
Takifugu
sp. (Fugu) : SINFRUT00000135566
Macaca
sp. (Macaque) : XM_001109922
Monodelphis
sp. (Opossum) : XM_001366330
Pan
sp. (Chimpanzee) : XM_525053
HIX0001557
HIT000594939 (
ENST00000491415
)
(Digestive organ expansion factor homolog;)
genome : 210,001,352 - 210,030,910 (29,559)
query : 1 - 8,446 (8,446/8,446)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, mito 9, cyto 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001557)
HIX0001557
HIT000306755
(
CR749825
)
(Digestive organ expansion factor homolog;)
genome : 210,001,376 - 210,030,909 (29,534)
query : 2 - 8,419 (8,418/8,459)
12 exons
identity = 0.997
5'(1.000;1.000;0.992;0.994;1.000;1.000;1.000;
1.000;1.000;1.000;0.996;0.997)3'
coverage = 1.000
InterPro :
IPR010678 : Digestive organ expansion factor, predicted
GO :
0005634 : Cellular Component : nucleus
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, mito 9, cyto 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001557)
HIX0001557
HIT000057161
(
BX648514
)
(Digestive organ expansion factor homolog;)
genome : 210,001,400 - 210,025,422 (24,023)
query : 2 - 2,911 (2,910/2,931)
12 exons
identity = 0.998
5'(1.000;1.000;0.988;0.994;1.000;0.998;1.000;
1.000;1.000;1.000;1.000;0.999)3'
coverage = 0.999
InterPro :
IPR010678 : Digestive organ expansion factor, predicted
GO :
0005634 : Cellular Component : nucleus
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, mito 9, cyto 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001557)
HIX0001557
HIT000020973
(
AK096118
)
(Digestive organ expansion factor homolog.)
genome : 210,012,150 - 210,017,977 (5,828)
query : 1 - 2,895 (2,895/2,895)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR010678 : Digestive organ expansion factor, predicted
GO :
0005634 : Cellular Component : nucleus
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25.5, extr_plas 13.5, E.R. 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001557)
HIX0001557
HIT000555754 (
ENST00000457820
)
(Digestive organ expansion factor homolog.)
genome : 210,012,150 - 210,017,977 (5,828)
query : 1 - 2,895 (2,895/2,895)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25.5, extr_plas 13.5, E.R. 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001557)
HIX0001557
HIT000043547
(
AK123674
)
(Digestive organ expansion factor homolog.)
genome : 210,013,807 - 210,025,558 (11,752)
query : 1 - 1,940 (1,940/1,940)
6 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR010678 : Digestive organ expansion factor, predicted
GO :
0005634 : Cellular Component : nucleus
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 28, cyto_nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001557)
HIX0001557
HIT000490423
(
AK295799
)
(Conserved hypothetical protein.)
genome : 210,026,655 - 210,028,182 (1,528)
query : 1 - 1,529 (1,529/1,529)
1 exon
identity = 0.998
5'(0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001557)
HIX0001557
HIT000006040
(
AK022766
)
(Conserved hypothetical protein.)
genome : 210,028,398 - 210,030,908 (2,511)
query : 1 - 2,512 (2,512/2,512)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto_nucl 15.3333, cyto 5.5, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001557)
AL022398.1
209920001-210030189 F +
NCBI
AL022728.1
210030190-210056613 F +
NCBI
AL035046.5
210056614-210076487 F +
NCBI
AL022399.2
210076488-210080000 F +
NCBI