Clickable map CGI

HIX0001752
pHIT000003673 ( pHIT000003673 )
  (Hypothetical short protein.)
  genome : 244,998,384 - 244,998,868 (485)
  query : 1 - 210 (210/210)
  2 exons
  SOSUI :
    SOLUBLE PROTEIN
  JIGSAW prediction
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001752)
  CAGE tag :
    H08BA01N2103

HIX0001752
HIT000509882 ( ENST00000411948 )
  (Cox20/FAM36A family protein.)
  genome : 244,998,624 - 245,008,359 (9,736)
  query : 1 - 2,631 (2,631/2,631)
  4 exons
  identity = 1.000
  5'(1.000;1.000;1.000;1.000)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 21, extr 6, mito 2, lyso 2
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001752)

HIX0001752
HIT000319147 ( NM_198076 )
  (Cox20/FAM36A family protein.)
  genome : 244,998,639 - 245,008,358 (9,720)
  query : 1 - 2,615 (2,615/2,632)
  4 exons
  identity = 1.000
  5'(1.000;1.000;1.000;1.000)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 21, extr 6, mito 2, lyso 2
  RefSeq
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001752)

HIX0001752
HIT000045132 ( AK125259 )
  Representative transcript
  (Cytochrome c oxidase protein 20 homolog;)
  genome : 244,998,639 - 245,008,066 (9,428)
  query : 1 - 2,322 (2,322/2,322)
  4 exons
  identity = 0.999
  5'(1.000;0.991;1.000;0.999)3'
  coverage = 1.000
  InterPro :
    IPR022533 : Cox20/FAM36A
    IPR023242 : FAM36A
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 21, extr 6, mito 2, lyso 2
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001752)

HIX0001752
HIT000347808 ( ENST00000366528 )
  (Cox20/FAM36A family protein.)
  genome : 244,998,918 - 245,006,554 (7,637)
  query : 1 - 568 (568/568)
  5 exons
  identity = 1.000
  5'(1.000;1.000;1.000;1.000;1.000)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 16.5, cyto_nucl 11.5, extr 11, nucl 3.5
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001752)

HIX0001752
HIT000475338 ( ENST00000391839 )
  (FAM36A family protein.)
  genome : 244,998,958 - 245,007,182 (8,225)
  query : 1 - 1,005 (1,005/1,005)
  3 exons
  identity = 1.000
  5'(1.000;1.000;1.000)3'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    cyto 17, extr 13
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001752)

HIX0001752
HIT000601490 ( ENST00000498262 )
  (FAM36A family protein.)
  genome : 244,998,961 - 245,008,359 (9,399)
  query : 1 - 2,290 (2,290/2,290)
  4 exons
  identity = 1.000
  5'(1.000;1.000;1.000;1.000)3'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    extr 16, cyto 12.5, cyto_mito 8
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001752)

HIX0001752
HIT000049769 ( AK130498 )
  (Cytochrome c oxidase protein 20 homolog.)
  genome : 244,998,961 - 245,008,066 (9,106)
  query : 1 - 1,997 (1,997/1,997)
  4 exons
  identity = 0.995
  5'(1.000;1.000;1.000;0.994)3'
  coverage = 1.000
  InterPro :
    IPR023242 : FAM36A
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    extr 16, cyto 12.5, cyto_mito 8
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001752)

HIX0001752
HIT000260382 ( BC062419 )
  (Cytochrome c oxidase protein 20 homolog;)
  genome : 244,998,963 - 245,006,958 (7,996)
  query : 1 - 891 (891/912)
  4 exons
  identity = 1.000
  5'(1.000;1.000;1.000;1.000)3'
  coverage = 1.000
  InterPro :
    IPR022533 : Cox20/FAM36A
    IPR023242 : FAM36A
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 21, extr 6, mito 2, lyso 2
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001752)

HIX0001752
HIT000038357 ( BC018519 )
  (Cytochrome c oxidase protein 20 homolog;)
  genome : 244,998,964 - 245,006,599 (7,636)
  query : 1 - 531 (531/545)
  4 exons
  identity = 1.000
  5'(1.000;1.000;1.000;1.000)3'
  coverage = 1.000
  InterPro :
    IPR022533 : Cox20/FAM36A
    IPR023242 : FAM36A
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 21, extr 6, mito 2, lyso 2
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001752)

HIX0001752
HIT000003341 ( AK000866 )
  (Cytochrome c oxidase protein 20 homolog;)
  genome : 244,998,988 - 245,008,066 (9,079)
  query : 1 - 1,974 (1,974/1,974)
  4 exons
  identity = 1.000
  5'(1.000;1.000;1.000;1.000)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 21, extr 6, mito 2, lyso 2
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001752)

HIX0001752
HIT000335279 ( BC095486 )
  (Cytochrome c oxidase protein 20 homolog;)
  genome : 244,998,994 - 245,007,088 (8,095)
  query : 1 - 990 (990/1,019)
  4 exons
  identity = 1.000
  5'(1.000;1.000;1.000;1.000)3'
  coverage = 1.000
  InterPro :
    IPR022533 : Cox20/FAM36A
    IPR023242 : FAM36A
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 21, extr 6, mito 2, lyso 2
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001752)

HIX0001752
HIT000495384 ( AK300760 )
  (Cytochrome c oxidase protein 20 homolog.)
  genome : 244,998,997 - 245,007,845 (8,849)
  query : 1 - 1,634 (1,634/1,634)
  3 exons
  identity = 0.996
  5'(1.000;1.000;0.996)3'
  coverage = 1.000
  InterPro :
    IPR023242 : FAM36A
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    cyto 17, extr 13
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001752)

HIX0001752
HIT000261362 ( BC064399 )
  (Cytochrome c oxidase protein 20 homolog;)
  genome : 244,999,000 - 245,008,067 (9,068)
  query : 1 - 1,963 (1,963/1,976)
  4 exons
  identity = 1.000
  5'(1.000;1.000;1.000;1.000)3'
  coverage = 1.000
  InterPro :
    IPR022533 : Cox20/FAM36A
    IPR023242 : FAM36A
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 21, extr 6, mito 2, lyso 2
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001752)

HIX0001752
HIT000067061 ( AF086182 )
  (Cytochrome c oxidase protein 20 homolog.)
  genome : 244,999,003 - 245,006,868 (7,866)
  query : 1 - 646 (646/655)
  3 exons
  identity = 1.000
  5'(1.000;1.000;1.000)3'
  coverage = 1.000
  InterPro :
    IPR023242 : FAM36A
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    cyto 17, extr 13
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001752)

HIX0001752
HIT000024861 ( AL122072 )
  (Cytochrome c oxidase protein 20 homolog.)
  genome : 245,003,049 - 245,006,582 (3,534)
  query : 1 - 2,616 (2,616/2,625)
  3 exons
  identity = 1.000
  5'(1.000;1.000;1.000)3'
  coverage = 1.000
  InterPro :
    IPR022533 : Cox20/FAM36A
    IPR023242 : FAM36A
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 14, extr 9, mito 5, golg 2
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001752)

HIX0001752
HIT000569486 ( ENST00000464757 )
  (Cox20/FAM36A family protein.)
  genome : 245,003,049 - 245,006,582 (3,534)
  query : 1 - 2,616 (2,616/2,616)
  3 exons
  identity = 1.000
  5'(1.000;1.000;1.000)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 14, extr 9, mito 5, golg 2
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001752)

HIX0213778
HIT000562963 ( NR_026778 )
  (Conserved hypothetical protein.)
  genome : 245,003,940 - 245,010,243 (6,304)
  query : 1 - 5,045 (5,045/5,079)
  2 exons
  identity = 1.000
  3'(1.000;1.000)5'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    extr 16, cyto 11, cyto_nucl 8, extr_plas 8
  RefSeq
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0213778)

HIX0213778
HIT000243090 ( AF448858 )
  (Conserved hypothetical protein.)
  genome : 245,003,940 - 245,006,768 (2,829)
  query : 1 - 2,829 (2,829/2,862)
  1 exon
  identity = 0.999
  3'(0.999)5'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    plas 28, extr 4
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0213778)

HIX0213778
HIT000093899 ( BC035431 )
  (Hypothetical short protein.)
  genome : 245,003,940 - 245,004,964 (1,025)
  query : 1 - 1,025 (1,025/1,051)
  1 exon
  identity = 1.000
  3'(1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 24, cyto 3.5, cyto_nucl 3.5, nucl 2.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0213778)

HIX0213778
HIT000347807 ( ENST00000366527 )
  (Conserved hypothetical protein.)
  genome : 245,003,940 - 245,010,205 (6,266)
  query : 1 - 5,007 (5,007/5,007)
  2 exons
  identity = 1.000
  3'(1.000;1.000)5'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    extr 16, cyto 11, cyto_nucl 8, extr_plas 8
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0213778)

HIX0001752
HIT000011378 ( AK054764 )
  (Cytochrome c oxidase protein 20 homolog.)
  genome : 245,003,947 - 245,006,174 (2,228)
  query : 1 - 2,228 (2,228/2,228)
  1 exon
  identity = 1.000
  5'(1.000)3'
  coverage = 1.000
  InterPro :
    IPR023242 : FAM36A
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 11, cyto 9, mito 9, cyto_mito 9
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001752)

HIX0213778
HIT000020152 ( AK095297 )
  Representative transcript
  (Conserved hypothetical protein.)
  genome : 245,005,436 - 245,009,977 (4,542)
  query : 1 - 3,284 (3,284/3,284)
  2 exons
  identity = 0.999
  3'(0.999;1.000)5'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    extr 16, cyto 11, cyto_nucl 8, extr_plas 8
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0213778)

HIX0213780
HIT000020380 ( AK095525 )
  (Hypothetical short protein.)
  genome : 245,014,474 - 245,016,973 (2,500)
  query : 1 - 2,500 (2,500/2,500)
  1 exon
  identity = 1.000
  3'(1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cysk 26, extr 4
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0213780)

HIX0213780
HIT000093598 ( BC034925 )
  (Heterogeneous nuclear ribonucleoprotein U family protein.)
  genome : 245,016,962 - 245,023,738 (6,777)
  query : 1 - 2,353 (2,353/2,409)
  11 exons
  identity = 0.998
  3'(1.000;1.000;1.000;0.984;1.000;1.000;1.000;
      1.000;1.000;1.000;1.000)5'
  coverage = 1.000
  InterPro :
    IPR001870 : B30.2/SPRY domain
    IPR003877 : SPRY domain
    IPR026745 : Heterogeneous nuclear ribonucleoprotein U
  GO :
    0005515 : Molecular Function : protein binding
    0005634 : Cellular Component : nucleus
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 22, cyto_nucl 15.5, nucl 7
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0213780)

HIX0213780
HIT000243129 ( AF461014 )
  Representative transcript
  (Heterogeneous nuclear ribonucleoprotein U family protein.)
  genome : 245,017,435 - 245,024,393 (6,959)
  query : 1 - 2,534 (2,534/2,543)
  11 exons
  identity = 0.997
  3'(1.000;1.000;1.000;0.984;1.000;1.000;1.000;
      1.000;1.000;1.000;0.996)5'
  coverage = 1.000
  InterPro :
    IPR001870 : B30.2/SPRY domain
    IPR003877 : SPRY domain
    IPR026745 : Heterogeneous nuclear ribonucleoprotein U
  GO :
    0005515 : Molecular Function : protein binding
    0005634 : Cellular Component : nucleus
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 16, cyto_nucl 14, nucl 10, pero 3
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0213780)

HIX0213780
HIT000347805 ( ENST00000366525 )
  (Heterogeneous nuclear ribonucleoprotein U family protein.)
  genome : 245,017,435 - 245,024,393 (6,959)
  query : 1 - 2,535 (2,535/2,535)
  11 exons
  identity = 0.998
  3'(1.000;1.000;1.000;0.984;1.000;1.000;1.000;
      1.000;1.000;1.000;1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 18.5, cyto_nucl 15.5, nucl 11.5
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0213780)

HIX0213780
HIT000668336_01 ( ENST00000554987 )
  (Hypothetical protein.)
  genome : 245,017,755 - 245,018,912 (1,158)
  query : 24 - 333 (310/333)
  3 exons
  identity = 0.968
  3'(0.961;1.000;0.957)5'
  coverage = 0.931
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto_nucl 13.5, cyto 12.5, nucl 9.5, extr 7
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0213780)

HIX0213780
HIT000573244 ( ENST00000468690 )
  (Conserved hypothetical protein.)
  genome : 245,019,716 - 245,020,378 (663)
  query : 1 - 561 (561/561)
  2 exons
  identity = 1.000
  3'(1.000;1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 16, nucl 9, cyto 4
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0213780)

HIX0213780
HIT000570562 ( ENST00000465881 )
  (SPRY domain containing protein.)
  genome : 245,021,455 - 245,022,649 (1,195)
  query : 1 - 741 (741/741)
  2 exons
  identity = 1.000
  3'(1.000;1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 22, cyto 8.5, cyto_nucl 5
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0213780)

HIX0214196
HIT000580446 ( ENST00000476241 )
  (Heterogeneous nuclear ribonucleoprotein U family protein.)
  genome : 245,025,080 - 245,027,793 (2,714)
  query : 1 - 1,687 (1,687/1,687)
  3 exons
  identity = 1.000
  3'(1.000;1.000;1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 26, cyto_nucl 17.5, cyto 5
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0214196)

HIX0001754
HIT000580213 ( ENST00000475997 )
  (Heterogeneous nuclear ribonucleoprotein U; hnRNP U; Scaffold attachment factor A; SAF-A; p120; pp120;)
  genome : 245,008,469 - 245,018,799 (10,331)
  query : 1 - 496 (496/496)
  5 exons
  identity = 1.000
  3'(1.000;1.000;1.000;1.000;1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 25, extr 4
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001754)

HIX0001754
HIT000593300 ( ENST00000489705 )
  (Heterogeneous nuclear ribonucleoprotein U; hnRNP U; Scaffold attachment factor A; SAF-A;)
  genome : 245,008,554 - 245,017,805 (9,252)
  query : 1 - 451 (451/451)
  4 exons
  identity = 1.000
  3'(1.000;1.000;1.000;1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto_nucl 13, cyto 12, extr 10, nucl 10
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001754)

HIX0001754
HIT000201247 ( NM_004501 )
  (Heterogeneous nuclear ribonucleoprotein U; hnRNP U; Scaffold attachment factor A; SAF-A; p120; pp120;)
  genome : 245,013,602 - 245,027,827 (14,226)
  query : 1 - 6,789 (6,789/6,789)
  14 exons
  identity = 0.999
  3'(1.000;1.000;1.000;0.984;1.000;1.000;1.000;
      1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 21.5, cyto_nucl 17.8333, cyto 9,
    cyto_golg 5.66667
  RefSeq
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001754)

HIX0001754
HIT000210230 ( NM_031844 )
  (Heterogeneous nuclear ribonucleoprotein U; hnRNP U; Scaffold attachment factor A; SAF-A; p120; pp120;)
  genome : 245,013,602 - 245,027,827 (14,226)
  query : 1 - 6,846 (6,846/6,846)
  14 exons
  identity = 0.999
  3'(1.000;1.000;1.000;0.984;1.000;1.000;1.000;
      1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 21.5, cyto_nucl 17.8333, cyto 9,
    cyto_golg 5.66667
  RefSeq
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001754)

HIX0001754
HIT000542310 ( ENST00000444376 )
  (Heterogeneous nuclear ribonucleoprotein U; hnRNP U; Scaffold attachment factor A; SAF-A; p120; pp120;)
  genome : 245,014,468 - 245,027,844 (13,377)
  query : 1 - 5,940 (5,940/5,940)
  14 exons
  identity = 0.999
  3'(1.000;1.000;1.000;0.984;1.000;1.000;1.000;
      1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 21.5, cyto_nucl 17.8333, cyto 9,
    cyto_golg 5.66667
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001754)

HIX0001754
HIT000037320 ( BC015782 )
  (Heterogeneous nuclear ribonucleoprotein U; hnRNP U; Scaffold attachment factor A; SAF-A; p120; pp120;)
  genome : 245,016,690 - 245,027,304 (10,615)
  query : 1 - 3,235 (3,235/3,266)
  14 exons
  identity = 0.999
  3'(1.000;1.000;1.000;0.984;1.000;1.000;1.000;
      1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
  coverage = 1.000
  InterPro :
    IPR001870 : B30.2/SPRY domain
    IPR003877 : SPRY domain
    IPR026745 : Heterogeneous nuclear ribonucleoprotein U
  GO :
    0005515 : Molecular Function : protein binding
    0005634 : Cellular Component : nucleus
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 21.5, cyto_nucl 15.3333, cyto 8,
    cyto_mito 4.83333
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001754)

HIX0001754
HIT000112335 ( ENST00000283179 )
  (Heterogeneous nuclear ribonucleoprotein U; hnRNP U; Scaffold attachment factor A; SAF-A; p120; pp120;)
  genome : 245,016,690 - 245,027,773 (11,084)
  query : 1 - 3,704 (3,704/3,704)
  14 exons
  identity = 0.999
  3'(1.000;1.000;1.000;0.984;1.000;1.000;1.000;
      1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 21.5, cyto_nucl 17.8333, cyto 9,
    cyto_golg 5.66667
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001754)

HIX0001754
HIT000046741 ( AK126868 )
  (Heterogeneous nuclear ribonucleoprotein U isoform b.)
  genome : 245,016,691 - 245,027,793 (11,103)
  query : 1 - 3,498 (3,498/3,498)
  15 exons
  identity = 0.998
  3'(0.998;1.000;1.000;0.984;1.000;1.000;1.000;
      1.000;1.000;1.000;1.000;1.000;1.000;1.000;
      1.000)5'
  coverage = 1.000
  InterPro :
    IPR001870 : B30.2/SPRY domain
    IPR003034 : SAP domain
    IPR003877 : SPRY domain
    IPR026745 : Heterogeneous nuclear ribonucleoprotein U
  GO :
    0003676 : Molecular Function : nucleic acid binding
    0005515 : Molecular Function : protein binding
    0005634 : Cellular Component : nucleus
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 22, cyto_nucl 17.3333, cyto 8.5,
    cyto_golg 5.33333
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001754)

HIX0001754
HIT000065624 ( AF068846 )
  (Heterogeneous nuclear ribonucleoprotein U; hnRNP U; Scaffold attachment factor A; SAF-A; p120; pp120;)
  genome : 245,016,962 - 245,027,827 (10,866)
  query : 1 - 3,481 (3,481/3,500)
  14 exons
  identity = 0.997
  3'(0.999;1.000;1.000;0.981;1.000;1.000;1.000;
      1.000;1.000;1.000;1.000;1.000;1.000;0.994)5'
  coverage = 1.000
  InterPro :
    IPR001870 : B30.2/SPRY domain
    IPR003034 : SAP domain
    IPR003877 : SPRY domain
    IPR026745 : Heterogeneous nuclear ribonucleoprotein U
  GO :
    0003676 : Molecular Function : nucleic acid binding
    0005515 : Molecular Function : protein binding
    0005634 : Cellular Component : nucleus
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 21.5, cyto_nucl 17.8333, cyto 9,
    cyto_golg 5.66667
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001754)

HIX0001754
HIT000086963 ( BC007950 )
  (Heterogeneous nuclear ribonucleoprotein U isoform b.)
  genome : 245,016,962 - 245,027,308 (10,347)
  query : 1 - 2,910 (2,910/2,927)
  14 exons
  identity = 0.998
  3'(1.000;1.000;1.000;0.984;0.994;1.000;1.000;
      1.000;1.000;1.000;1.000;1.000;1.000;0.997)5'
  coverage = 1.000
  InterPro :
    IPR001870 : B30.2/SPRY domain
    IPR003877 : SPRY domain
    IPR026745 : Heterogeneous nuclear ribonucleoprotein U
  GO :
    0005515 : Molecular Function : protein binding
    0005634 : Cellular Component : nucleus
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 20.5, cyto_nucl 15.3333, cyto 9,
    cyto_mito 5.33333
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001754)

HIX0001754
HIT000049940 ( AK130669 )
  (Heterogeneous nuclear ribonucleoprotein U; hnRNP U; Scaffold attachment factor A; SAF-A; p120; pp120;)
  genome : 245,016,957 - 245,025,990 (9,034)
  query : 1 - 2,540 (2,540/2,540)
  13 exons
  identity = 0.998
  3'(0.998;1.000;1.000;0.984;1.000;1.000;1.000;
      1.000;1.000;1.000;1.000;1.000;1.000)5'
  coverage = 1.000
  InterPro :
    IPR001870 : B30.2/SPRY domain
    IPR003877 : SPRY domain
    IPR026745 : Heterogeneous nuclear ribonucleoprotein U
  GO :
    0005515 : Molecular Function : protein binding
    0005634 : Cellular Component : nucleus
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 22, cyto_nucl 15.5, nucl 7
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001754)

HIX0001754
HIT000322746 ( X65488 )
  (Heterogeneous nuclear ribonucleoprotein U; hnRNP U; Scaffold attachment factor A; SAF-A; p120; pp120;)
  genome : 245,016,990 - 245,027,651 (10,662)
  query : 1 - 3,223 (3,223/3,223)
  14 exons
  identity = 0.998
  3'(0.999;1.000;1.000;0.981;1.000;1.000;1.000;
      1.000;1.000;1.000;1.000;1.000;1.000;0.997)5'
  coverage = 1.000
  InterPro :
    IPR001870 : B30.2/SPRY domain
    IPR003034 : SAP domain
    IPR003877 : SPRY domain
    IPR026745 : Heterogeneous nuclear ribonucleoprotein U
  GO :
    0003676 : Molecular Function : nucleic acid binding
    0005515 : Molecular Function : protein binding
    0005634 : Cellular Component : nucleus
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 21.5, cyto_nucl 17.8333, cyto 9,
    cyto_golg 5.66667
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001754)

HIX0001754
HIT000039837 ( BC024767 )
  (Heterogeneous nuclear ribonucleoprotein U; hnRNP U; Scaffold attachment factor A; SAF-A; p120; pp120;)
  genome : 245,017,435 - 245,027,760 (10,326)
  query : 1 - 2,890 (2,890/2,926)
  14 exons
  identity = 0.998
  3'(0.997;1.000;1.000;0.984;1.000;1.000;1.000;
      1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
  coverage = 1.000
  InterPro :
    IPR001870 : B30.2/SPRY domain
    IPR003034 : SAP domain
    IPR003877 : SPRY domain
    IPR026745 : Heterogeneous nuclear ribonucleoprotein U
  GO :
    0003676 : Molecular Function : nucleic acid binding
    0005515 : Molecular Function : protein binding
    0005634 : Cellular Component : nucleus
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 21.5, cyto_nucl 17.8333, cyto 9,
    cyto_golg 5.66667
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001754)

HIX0001754
HIT000491743 ( AK297119 )
  (Heterogeneous nuclear ribonucleoprotein U isoform b.)
  genome : 245,017,436 - 245,027,784 (10,349)
  query : 1 - 2,846 (2,846/2,846)
  15 exons
  identity = 0.998
  3'(1.000;1.000;1.000;0.981;1.000;1.000;1.000;
      1.000;1.000;1.000;1.000;1.000;1.000;1.000;
      1.000)5'
  coverage = 1.000
  InterPro :
    IPR001870 : B30.2/SPRY domain
    IPR003034 : SAP domain
    IPR003877 : SPRY domain
    IPR026745 : Heterogeneous nuclear ribonucleoprotein U
  GO :
    0003676 : Molecular Function : nucleic acid binding
    0005515 : Molecular Function : protein binding
    0005634 : Cellular Component : nucleus
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 22.5, cyto_nucl 17.8333, cyto 8,
    cyto_golg 5.16667
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001754)

HIX0001754
HIT000031649 ( BC003621 )
  (Heterogeneous nuclear ribonucleoprotein U; hnRNP U; Scaffold attachment factor A; SAF-A; p120; pp120;)
  genome : 245,017,707 - 245,027,760 (10,054)
  query : 1 - 2,617 (2,617/2,634)
  14 exons
  identity = 0.998
  3'(1.000;1.000;1.000;0.984;1.000;1.000;1.000;
      1.000;1.000;1.000;1.000;1.000;1.000;0.999)5'
  coverage = 1.000
  InterPro :
    IPR001870 : B30.2/SPRY domain
    IPR003034 : SAP domain
    IPR003877 : SPRY domain
    IPR026745 : Heterogeneous nuclear ribonucleoprotein U
  GO :
    0003676 : Molecular Function : nucleic acid binding
    0005515 : Molecular Function : protein binding
    0005634 : Cellular Component : nucleus
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 21.5, cyto_nucl 17.8333, cyto 9,
    cyto_golg 5.66667
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001754)

HIX0001754
HIT000587834 ( ENST00000483966 )
  (Heterogeneous nuclear ribonucleoprotein U-like protein 1; Adenovirus early region 1B-associated protein 5; E1B-55 kDa-associated protein 5; E1B-AP5;)
  genome : 245,019,585 - 245,026,957 (7,373)
  query : 1 - 1,438 (1,438/1,438)
  10 exons
  identity = 1.000
  3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
      1.000;1.000;1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 14.5, extr 14, cyto_nucl 8
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001754)

HIX0001754
HIT000426527 ( AK307661 )
  (Heterogeneous nuclear ribonucleoprotein U; hnRNP U; Scaffold attachment factor A; SAF-A; p120; pp120;)
  genome : 245,019,769 - 245,027,294 (7,526)
  query : 1 - 1,587 (1,587/1,587)
  10 exons
  identity = 0.999
  3'(1.000;1.000;1.000;0.996;1.000;1.000;1.000;
      1.000;1.000;1.000)5'
  coverage = 1.000
  InterPro :
    IPR001870 : B30.2/SPRY domain
    IPR003877 : SPRY domain
    IPR026745 : Heterogeneous nuclear ribonucleoprotein U
  GO :
    0005515 : Molecular Function : protein binding
    0005634 : Cellular Component : nucleus
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 18.5, cyto_nucl 16.3333, nucl 12,
    cyto_mito 10.6667
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001754)

HIX0001754
HIT000538799 ( ENST00000440865 )
  (Heterogeneous nuclear ribonucleoprotein U; hnRNP U; Scaffold attachment factor A; SAF-A; p120; pp120;)
  genome : 245,021,413 - 245,026,396 (4,984)
  query : 1 - 1,067 (1,067/1,067)
  6 exons
  identity = 1.000
  3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 11, mito 9, cyto_nucl 7.5, cyto 6.5, nucl 5.5,
    extr_plas 5.5
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001754)

bases per tick : kb first site :
main : All Human Genes JIGSAW prediction ESTs assembly
homology : UCSC CCDS Pseudogene.org Conserved regions ( Segmental duplication P.troglodytes P.abelii M.mulatta M.musculus R.norvegicus C.familiaris E.caballus B.taurus M.domestica G.gallus D.rerio O.latipes T.nigroviridis T.rubripes )
gene prediction : FGENESH GenScan HMMgene tRNA
show... : SNPs ESTs(summary) ESTs(detail) CAGE tag(summary) CAGE tag(detail)
sequence viewer : = ( , )