bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0000455
HIT000203898_03 (
NM_012090
)
(Microtubule-actin cross-linking factor 1.)
genome : 39,549,839 - 39,952,810 (402,972)
query : 1 - 17,689 (17,689/17,701)
92 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21.5, cyto_nucl 16, cyto 9.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000455)
HIX0000455
HIT000314945_03 (
ENST00000361689
)
(Microtubule-actin cross-linking factor 1.)
genome : 39,549,839 - 39,952,659 (402,821)
query : 1 - 17,538 (17,538/17,538)
92 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21.5, cyto_nucl 16, cyto 9.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000455)
HIX0000455
HIT000058958_03
(
AB029290
)
Representative transcript
(Microtubule-actin cross-linking factor 1.)
genome : 39,549,839 - 39,952,640 (402,802)
query : 1 - 17,518 (17,518/17,518)
92 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001589 : Actinin-type actin-binding domain, conserved site
IPR001715 : Calponin homology domain
IPR002017 : Spectrin repeat
IPR002048 : EF-hand domain
IPR003108 : Growth-arrest-specific protein 2 domain
IPR011992 : EF-hand domain pair
IPR018159 : Spectrin/alpha-actinin
IPR018247 : EF-Hand 1, calcium-binding site
IPR028408 : Microtubule-actin cross-linking factor 1
GO :
0003779 : Molecular Function : actin binding
0005509 : Molecular Function : calcium ion binding
0005515 : Molecular Function : protein binding
0007050 : Biological Process : cell cycle arrest
0008017 : Molecular Function : microtubule binding
0016055 : Biological Process : Wnt signaling pathway
0016887 : Molecular Function : ATPase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21.5, cyto_nucl 16, cyto 9.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000455)
Ortholog candidate ( ->
Evola
)
Pongo
sp. (Orangutan) : CR859897
Mus
sp. (Mouse) : DQ067088
Bos
sp. (Cow) : DQ347581
Canis
sp. (Dog) : ENSCAFT00000005050
Equus
sp. (Horse) : ENSECAT00000017611
Monodelphis
sp. (Opossum) : ENSMODT00000031048
Oryzias
sp. (Medaka) : ENSORLT00000009198
Rattus
sp. (Rat) : ENSRNOT00000021951
Tetraodon
sp. (Tetraodon) : GSTENT00030688001
Danio
sp. (Zebrafish) : XM_001920059
Pan
sp. (Chimpanzee) : XM_513340
HIX0000455
HIT000354205_03 (
ENST00000372925
)
(Microtubule-actin cross-linking factor 1.)
genome : 39,765,986 - 39,952,659 (186,674)
query : 1 - 14,496 (14,496/14,496)
70 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto 10
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000455)
HIX0000455
HIT000000182_03
(
AB007934
)
(Microtubule-actin cross-linking factor 1.)
genome : 39,765,986 - 39,952,654 (186,669)
query : 1 - 14,491 (14,491/14,491)
70 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.992;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto 10
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000455)
HIX0000455
HIT000113190_03 (
ENST00000289893
)
(Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5; 620 kDa actin-binding protein; ABP620; Actin cross-linking family protein 7; Macrophin-1; Trabeculin-alpha;)
genome : 39,796,810 - 39,952,659 (155,850)
query : 1 - 19,141 (19,141/19,141)
62 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.934;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 10.5, cyto_mito 6.5, E.R. 6, pero 6, nucl 3,
plas 2, golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000455)
HIX0000455
HIT000007095
(
AK023821
)
(Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5; 620 kDa actin-binding protein; ABP620; Actin cross-linking family protein 7; Macrophin-1; Trabeculin-alpha;)
genome : 39,922,378 - 39,930,581 (8,204)
query : 1 - 4,159 (4,159/4,159)
4 exons
identity = 0.995
5'(0.994;1.000;0.994;0.997)3'
coverage = 1.000
InterPro :
IPR002048 : EF-hand domain
IPR003108 : Growth-arrest-specific protein 2 domain
IPR011992 : EF-hand domain pair
IPR018247 : EF-Hand 1, calcium-binding site
GO :
0005509 : Molecular Function : calcium ion binding
0007050 : Biological Process : cell cycle arrest
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 12.5, nucl 7.5, mito 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000455)
HIX0000455
HIT000601211 (
ENST00000497964
)
(Dystonin; Bullous pemphigoid antigen 1; BPA; Dystonia musculorum protein; Hemidesmosomal plaque protein; Microtubule actin cross-linking factor 2;)
genome : 39,922,378 - 39,930,581 (8,204)
query : 1 - 4,160 (4,160/4,160)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12, cyto_nucl 11.6667, nucl 9, mito 8,
cyto_plas 7.66667
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000455)
HIX0000455
HIT000520168 (
ENST00000422234
)
(Microtubule-actin cross-linking factor 1; Actin cross-linking family 7;)
genome : 39,929,282 - 39,945,666 (16,385)
query : 17 - 477 (461/477)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 0.966
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, cyto_nucl 12.5, nucl 8, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000455)
HIX0000455
HIT000567327 (
ENST00000462496
)
(Microtubule-actin cross-linking factor 1; Actin cross-linking family 7;)
genome : 39,929,282 - 39,945,788 (16,507)
query : 13 - 526 (514/526)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 0.977
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 11, nucl 10, cyto 10, extr 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000455)
HIX0000455
HIT000566954 (
ENST00000462103
)
(Microtubule-actin cross-linking factor 1; Actin cross-linking family 7;)
genome : 39,933,422 - 39,945,552 (12,131)
query : 1 - 627 (627/627)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, cyto_nucl 15, extr 8, nucl 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000455)
HIX0000455
HIT000006559
(
AK023285
)
(Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5; 620 kDa actin-binding protein; ABP620; Actin cross-linking family protein 7; Macrophin-1; Trabeculin-alpha;)
genome : 39,934,265 - 39,951,889 (17,625)
query : 1 - 2,079 (2,079/2,079)
4 exons
identity = 0.999
5'(0.993;1.000;1.000;0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, mito 8, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000455)
HIX0000455
HIT000599685 (
ENST00000496360
)
(Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5; 620 kDa actin-binding protein; ABP620; Actin cross-linking family protein 7; Macrophin-1; Trabeculin-alpha;)
genome : 39,934,265 - 39,951,889 (17,625)
query : 1 - 2,080 (2,080/2,080)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, mito 8, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000455)
HIX0000455
HIT000056088
(
BX647441
)
(Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5; 620 kDa actin-binding protein; ABP620; Actin cross-linking family protein 7; Macrophin-1; Trabeculin-alpha;)
genome : 39,934,315 - 39,952,655 (18,341)
query : 1 - 2,685 (2,685/2,703)
3 exons
identity = 0.999
5'(1.000;1.000;0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, mito 8, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000455)
HIX0000455
HIT000601062 (
ENST00000497807
)
(Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5; 620 kDa actin-binding protein; ABP620; Actin cross-linking family protein 7; Macrophin-1; Trabeculin-alpha;)
genome : 39,934,315 - 39,952,659 (18,345)
query : 1 - 2,689 (2,689/2,689)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, mito 8, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000455)
HIX0000455
HIT000255155
(
AY527403
)
(Conserved hypothetical protein.)
genome : 39,946,287 - 39,948,465 (2,179)
query : 1 - 2,179 (2,179/2,179)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000455)
HIX0178419
pHIT000071573 ( pHIT000071573 )
Representative transcript
(Hypothetical protein.)
genome : 39,957,246 - 39,957,665 (420)
query : 1 - 420 (420/420)
1 exon
SOSUI :
SOLUBLE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0178419)
CAGE tag :
H05BE95H0709
HIX0213899
HIT000127325 (
ENST00000331593
)
(Bone morphogenetic protein 8B; BMP-8; BMP-8B; Osteogenic protein 2; OP-2; Precursor;)
genome : 39,957,318 - 39,991,607 (34,290)
query : 1 - 1,692 (1,692/1,692)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, pero 5, E.R. 3, mito 2, lyso 2, golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213899)
HIX0213899
HIT000251552
(
AY303954
)
Representative transcript
(Bone morphogenetic protein 8B; BMP-8; BMP-8B; Osteogenic protein 2; OP-2; Precursor;)
genome : 39,957,318 - 39,991,607 (34,290)
query : 1 - 1,692 (1,692/1,692)
7 exons
identity = 0.998
5'(1.000;1.000;0.993;0.995;0.988;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001111 : Transforming growth factor-beta, N-terminal
IPR001839 : Transforming growth factor-beta, C-terminal
IPR002405 : Inhibin, alpha subunit
IPR015615 : Transforming growth factor-beta-related
IPR017948 : Transforming growth factor beta, conserved site
IPR029034 : Cystine-knot cytokine
GO :
0005576 : Cellular Component : extracellular region
0008083 : Molecular Function : growth factor activity
0040007 : Biological Process : growth
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, pero 5, E.R. 3, mito 2, lyso 2, golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213899)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : BC052168
Macaca
sp. (Macaque) : ENSMMUT00000010483
Oryzias
sp. (Medaka) : ENSORLT00000008938
Pongo
sp. (Orangutan) : ENSPPYT00000001798
Tetraodon
sp. (Tetraodon) : GSTENT00013441001
Tetraodon
sp. (Tetraodon) : GSTENT00023714001
Danio
sp. (Zebrafish) : NM_001044971
Takifugu
sp. (Fugu) : SINFRUT00000164168
Rattus
sp. (Rat) : XM_001059507
Pan
sp. (Chimpanzee) : XM_001171201
Monodelphis
sp. (Opossum) : XM_001381064
Canis
sp. (Dog) : XM_844562
Bos
sp. (Cow) : XM_868452
Gallus
sp. (Chicken) : XR_026750
Equus
sp. (Horse) : XR_044586
HIX0116548
HIT000441727
(
DQ575196
)
Representative transcript
(Non-protein coding transcript.)
genome : 39,973,156 - 39,973,185 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0116548)
HIX0213899
HIT000390579
(
BC131617
)
(Bone morphogenetic protein 8A precursor.)
genome : 39,976,876 - 39,991,595 (14,720)
query : 27 - 996 (970/996)
6 exons
identity = 0.996
5'(1.000;0.993;0.990;0.988;1.000;1.000)3'
coverage = 0.974
InterPro :
IPR001111 : Transforming growth factor-beta, N-terminal
IPR001839 : Transforming growth factor-beta, C-terminal
IPR002405 : Inhibin, alpha subunit
IPR015615 : Transforming growth factor-beta-related
IPR017948 : Transforming growth factor beta, conserved site
IPR029034 : Cystine-knot cytokine
GO :
0005576 : Cellular Component : extracellular region
0008083 : Molecular Function : growth factor activity
0040007 : Biological Process : growth
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19.5, cyto_nucl 13, extr 8, cyto 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213899)
HIX0199835
HIT000264833
(
BC072388
)
(Succinyl-CoA:3-ketoacid coenzyme A transferase 2, mitochondrial; EC=2.8.3.5; 3-oxoacid CoA-transferase 2A; Testis-specific succinyl-CoA:3-oxoacid CoA-transferase; SCOT-t; Precursor;)
genome : 39,980,538 - 39,982,339 (1,802)
query : 1 - 1,802 (1,802/1,833)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
EC number :
EC 2.8.3.5
KEGG pathway :
00072 : Synthesis and degradation of ketone bodies (6)
00280 : Valine, leucine and isoleucine degradation (34)
00650 : Butanoate metabolism (47)
InterPro :
IPR004163 : Coenzyme A transferase binding site
IPR004165 : Coenzyme A transferase family I
IPR012792 : 3-oxoacid CoA-transferase, subunit A
GO :
0008152 : Biological Process : metabolic process
0008410 : Molecular Function : CoA-transferase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 16.5, cyto_mito 11, extr 7, cyto 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199835)
Ortholog candidate ( ->
Evola
)
Takifugu
sp. (Fugu) : SINFRUT00000154626
Danio
sp. (Zebrafish) : XR_045041
HIX0199835
HIT000545197 (
ENST00000447263
)
(Succinyl-CoA:3-ketoacid coenzyme A transferase 2, mitochondrial; EC=2.8.3.5; 3-oxoacid CoA-transferase 2A; Testis-specific succinyl-CoA:3-oxoacid CoA-transferase; SCOT-t; Precursor;)
genome : 39,980,628 - 39,982,162 (1,535)
query : 1 - 1,535 (1,535/1,535)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
EC number :
EC 2.8.3.5
KEGG pathway :
00072 : Synthesis and degradation of ketone bodies (6)
00280 : Valine, leucine and isoleucine degradation (34)
00650 : Butanoate metabolism (47)
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 16.5, cyto_mito 11, extr 7, cyto 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199835)
HIX0199835
HIT000007714_02
(
AK024440
)
Representative transcript
(Succinyl-CoA:3-ketoacid coenzyme A transferase 2, mitochondrial; EC=2.8.3.5; 3-oxoacid CoA-transferase 2A; Testis-specific succinyl-CoA:3-oxoacid CoA-transferase; SCOT-t; Precursor;)
genome : 39,981,411 - 39,985,807 (4,397)
query : 1 - 4,404 (4,404/4,404)
1 exon
identity = 0.996
5'(0.996)3'
coverage = 1.000
EC number :
EC 2.8.3.5
KEGG pathway :
00072 : Synthesis and degradation of ketone bodies (6)
00280 : Valine, leucine and isoleucine degradation (34)
00650 : Butanoate metabolism (47)
InterPro :
IPR004164 : Coenzyme A transferase active site
IPR004165 : Coenzyme A transferase family I
IPR012791 : 3-oxoacid CoA-transferase, subunit B
GO :
0008152 : Biological Process : metabolic process
0008410 : Molecular Function : CoA-transferase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, cyto_nucl 13.5, nucl 7, extr 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199835)
HIX0199890
HIT000486427 (
NR_003929
)
(Peptidyl-prolyl cis-trans isomerase E isoform 2.)
genome : 39,987,952 - 40,025,370 (37,419)
query : 1 - 2,637 (2,637/2,640)
9 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;0.999;1.000;1.000;
1.000;1.000)5'
coverage = 0.999
EC number :
EC 5.2.1.8
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 15, cyto 9.5, extr 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199890)
HIX0199890
HIT000538124 (
ENST00000440190
)
(Peptidyl-prolyl cis-trans isomerase E; PPIase E; EC=5.2.1.8; Cyclophilin E; Cyclophilin-33; Rotamase E;)
genome : 39,987,952 - 40,011,859 (23,908)
query : 1 - 681 (681/681)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
EC number :
EC 5.2.1.8
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto_nucl 8.5, cyto 7.5, nucl 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199890)
HIX0199890
HIT000515803 (
ENST00000417869
)
(Peptidyl-prolyl cis-trans isomerase E; PPIase E; EC=5.2.1.8; Cyclophilin E; Cyclophilin-33; Rotamase E;)
genome : 39,987,952 - 40,011,433 (23,482)
query : 1 - 487 (487/487)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 5.2.1.8
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 18, cyto_nucl 14.5, cyto 9, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199890)
HIX0199890
HIT000529487 (
ENST00000431553
)
(Peptidyl-prolyl cis-trans isomerase E; PPIase E; EC=5.2.1.8; Cyclophilin E; Cyclophilin-33; Rotamase E;)
genome : 39,987,952 - 40,007,513 (19,562)
query : 1 - 497 (497/497)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 5.2.1.8
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12, cyto 7, extr 4, mito 4, golg 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199890)
HIX0199890
HIT000548091 (
ENST00000450157
)
(Conserved hypothetical protein.)
genome : 39,987,952 - 40,007,432 (19,481)
query : 1 - 599 (599/599)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 19, cyto_nucl 6.5, nucl 5.5, cyto 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199890)
HIX0199890
HIT000556141 (
ENST00000458207
)
(Peptidyl-prolyl cis-trans isomerase E isoform 4.)
genome : 39,987,952 - 40,002,954 (15,003)
query : 1 - 693 (693/693)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 5.2.1.8
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, extr 7, cyto 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199890)
HIX0199890
HIT000127470 (
ENST00000331856
)
(Conserved hypothetical protein.)
genome : 39,987,952 - 39,991,357 (3,406)
query : 1 - 2,241 (2,241/2,241)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto_nucl 10, nucl 7.5, cyto 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199890)
HIX0199890
HIT000539675 (
ENST00000441741
)
(Non-protein coding transcript.)
genome : 39,987,952 - 39,990,548 (2,597)
query : 1 - 493 (493/493)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199890)
HIX0199890
HIT000017473
(
AK092606
)
Representative transcript
(Peptidyl-prolyl cis-trans isomerase E isoform 2.)
genome : 39,987,953 - 40,025,349 (37,397)
query : 1 - 2,612 (2,612/2,612)
9 exons
identity = 0.997
3'(1.000;0.991;1.000;1.000;0.999;1.000;0.977;
0.991;1.000)5'
coverage = 1.000
EC number :
EC 5.2.1.8
InterPro :
IPR029000 : Cyclophilin-like domain
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 15, cyto 9.5, extr 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199890)
Ortholog candidate ( ->
Evola
)
Gallus
sp. (Chicken) : BX934139
HIX0199890
HIT000018526
(
AK093659
)
(Conserved hypothetical protein.)
genome : 39,987,958 - 39,991,357 (3,400)
query : 1 - 2,235 (2,235/2,235)
3 exons
identity = 0.999
3'(0.995;1.000;0.999)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto_nucl 10, nucl 7.5, cyto 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199890)
HIX0028678
HIT000047072
(
AK127199
)
Representative transcript
(Conserved hypothetical protein.)
genome : 39,992,331 - 39,995,541 (3,211)
query : 1 - 2,553 (2,553/2,555)
2 exons
identity = 0.999
5'(0.999;1.000)3'
coverage = 0.999
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 17, E.R._mito 4.66667, mito 4.5, mito_pero 4.5,
cyto 4, pero 2, cyto_golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028678)
HIX0028678
HIT000007687
(
AK024413
)
(Conserved hypothetical protein.)
genome : 39,993,503 - 39,995,349 (1,847)
query : 1 - 1,852 (1,852/1,852)
1 exon
identity = 0.995
5'(0.995)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 17, E.R._mito 4.66667, mito 4.5, mito_pero 4.5,
cyto 4, pero 2, cyto_golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028678)
HIX0028678
HIT000334718
(
BC093743
)
(Conserved hypothetical protein.)
genome : 39,993,740 - 39,994,153 (414)
query : 1 - 414 (414/414)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 10, plas 7.5, extr_plas 6.5, extr 4.5, mito 4,
nucl 3, mito_pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028678)
HIX0028678
HIT000340173
(
BC112044
)
(Conserved hypothetical protein.)
genome : 39,993,740 - 39,994,153 (414)
query : 1 - 414 (414/414)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 10, plas 7.5, extr_plas 6.5, extr 4.5, mito 4,
nucl 3, mito_pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028678)
HIX0199890
HIT000525174 (
ENST00000427240
)
(Peptidyl-prolyl cis-trans isomerase E; PPIase E; EC=5.2.1.8; Cyclophilin E; Cyclophilin-33; Rotamase E;)
genome : 39,997,510 - 40,024,379 (26,870)
query : 1 - 813 (813/813)
7 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;1.000;0.961;1.000)5'
coverage = 1.000
EC number :
EC 5.2.1.8
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto_nucl 15, extr 7, cyto 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199890)
HIX0000457
HIT000221269
(
U75686
)
(Polyadenylate-binding protein 4; PABP-4; Poly(A)-binding protein 4; Activated-platelet protein 1; APP-1; Inducible poly(A)-binding protein; iPABP;)
genome : 40,026,488 - 40,042,416 (15,929)
query : 1 - 3,049 (3,049/3,118)
16 exons
identity = 0.995
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.986)5'
coverage = 0.978
InterPro :
IPR000504 : RNA recognition motif domain
IPR002004 : Polyadenylate-binding protein/Hyperplastic disc protein
IPR006515 : Polyadenylate binding protein, human types 1, 2, 3, 4
IPR012677 : Nucleotide-binding alpha-beta plait domain
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
0003723 : Molecular Function : RNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000457)
HIX0000457
HIT000200613 (
NM_003819
)
(Polyadenylate-binding protein 4; PABP-4; Poly(A)-binding protein 4; Activated-platelet protein 1; APP-1; Inducible poly(A)-binding protein; iPABP;)
genome : 40,026,485 - 40,042,521 (16,037)
query : 1 - 3,156 (3,156/3,182)
16 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000457)
HIX0000457
HIT000560142 (
NM_001135653
)
(Polyadenylate-binding protein 4; PABP-4; Poly(A)-binding protein 4; Activated-platelet protein 1; APP-1; Inducible poly(A)-binding protein; iPABP;)
genome : 40,026,485 - 40,042,521 (16,037)
query : 1 - 3,204 (3,204/3,230)
16 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000457)
HIX0000457
HIT000560143 (
NM_001135654
)
(Polyadenylate-binding protein 4 isoform 3.)
genome : 40,026,485 - 40,042,521 (16,037)
query : 1 - 3,117 (3,117/3,143)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000457)
HIX0000457
HIT000091984
(
BC029969
)
(Polyadenylate-binding protein 4; PABP-4; Poly(A)-binding protein 4; Activated-platelet protein 1; APP-1; Inducible poly(A)-binding protein; iPABP;)
genome : 40,026,485 - 40,042,073 (15,589)
query : 1 - 2,756 (2,756/2,782)
16 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000504 : RNA recognition motif domain
IPR002004 : Polyadenylate-binding protein/Hyperplastic disc protein
IPR006515 : Polyadenylate binding protein, human types 1, 2, 3, 4
IPR012677 : Nucleotide-binding alpha-beta plait domain
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
0003723 : Molecular Function : RNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000457)
HIX0000457
HIT000261946
(
BC065540
)
(Polyadenylate-binding protein 4 isoform 1.)
genome : 40,026,491 - 40,042,423 (15,933)
query : 1 - 3,014 (3,014/3,030)
15 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.995;
0.999)5'
coverage = 1.000
InterPro :
IPR000504 : RNA recognition motif domain
IPR002004 : Polyadenylate-binding protein/Hyperplastic disc protein
IPR006515 : Polyadenylate binding protein, human types 1, 2, 3, 4
IPR012677 : Nucleotide-binding alpha-beta plait domain
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
0003723 : Molecular Function : RNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000457)
HIX0000457
HIT000330697
(
AK222917
)
(Polyadenylate-binding protein 4 isoform 1.)
genome : 40,026,491 - 40,033,522 (7,032)
query : 8 - 1,435 (1,428/1,451)
10 exons
identity = 0.999
3'(1.000;0.990;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 0.995
InterPro :
IPR000504 : RNA recognition motif domain
IPR002004 : Polyadenylate-binding protein/Hyperplastic disc protein
IPR012677 : Nucleotide-binding alpha-beta plait domain
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
0003723 : Molecular Function : RNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31, cyto_nucl 17
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000457)
HIX0000457
HIT000264420
(
BC071591
)
(Polyadenylate-binding protein 4 isoform 3.)
genome : 40,026,491 - 40,042,457 (15,967)
query : 3 - 3,136 (3,134/3,150)
16 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;0.992;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.999)5'
coverage = 0.999
InterPro :
IPR000504 : RNA recognition motif domain
IPR002004 : Polyadenylate-binding protein/Hyperplastic disc protein
IPR006515 : Polyadenylate binding protein, human types 1, 2, 3, 4
IPR012677 : Nucleotide-binding alpha-beta plait domain
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
0003723 : Molecular Function : RNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000457)
HIX0000457
HIT000335056
(
BC094755
)
Representative transcript
(Polyadenylate-binding protein 4; PABP-4; Poly(A)-binding protein 4; Activated-platelet protein 1; APP-1; Inducible poly(A)-binding protein; iPABP;)
genome : 40,026,493 - 40,042,462 (15,970)
query : 1 - 3,137 (3,137/3,152)
16 exons
identity = 1.000
3'(0.997;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000504 : RNA recognition motif domain
IPR002004 : Polyadenylate-binding protein/Hyperplastic disc protein
IPR006515 : Polyadenylate binding protein, human types 1, 2, 3, 4
IPR012677 : Nucleotide-binding alpha-beta plait domain
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
0003723 : Molecular Function : RNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000457)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK135962
Danio
sp. (Zebrafish) : BC053126
Rattus
sp. (Rat) : BC088337
Bos
sp. (Cow) : BC134509
Monodelphis
sp. (Opossum) : ENSMODT00000022401
Oryzias
sp. (Medaka) : ENSORLT00000012938
Pongo
sp. (Orangutan) : ENSPPYT00000001797
Takifugu
sp. (Fugu) : SINFRUT00000136945
Macaca
sp. (Macaque) : XM_001113342
Equus
sp. (Horse) : XM_001503450
Pan
sp. (Chimpanzee) : XM_513344
Canis
sp. (Dog) : XM_539581
HIX0000457
HIT000354136 (
ENST00000372856
)
(Polyadenylate-binding protein 4 isoform 3.)
genome : 40,026,488 - 40,042,423 (15,936)
query : 1 - 3,016 (3,016/3,016)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000457)
HIX0000457
HIT000354137 (
ENST00000372857
)
(Polyadenylate-binding protein 4; PABP-4; Poly(A)-binding protein 4; Activated-platelet protein 1; APP-1; Inducible poly(A)-binding protein; iPABP;)
genome : 40,026,488 - 40,042,416 (15,929)
query : 1 - 3,048 (3,048/3,048)
16 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000457)
HIX0000457
HIT000354138 (
ENST00000372858
)
(Polyadenylate-binding protein 4; PABP-4; Poly(A)-binding protein 4; Activated-platelet protein 1; APP-1; Inducible poly(A)-binding protein; iPABP;)
genome : 40,026,488 - 40,042,073 (15,586)
query : 1 - 2,753 (2,753/2,753)
16 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000457)
HIX0000457
HIT000354142 (
ENST00000372862
)
(Polyadenylate-binding protein 4; PABP-4; Poly(A)-binding protein 4; Activated-platelet protein 1; APP-1; Inducible poly(A)-binding protein; iPABP;)
genome : 40,026,488 - 40,041,925 (15,438)
query : 1 - 2,470 (2,470/2,470)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000457)
HIX0000457
HIT000573042 (
ENST00000468476
)
(Polyadenylate-binding protein 4 isoform 3.)
genome : 40,026,488 - 40,030,198 (3,711)
query : 1 - 3,592 (3,592/3,592)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17.5, cyto_nucl 13, cyto 7.5, extr 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000457)
HIX0000457
HIT000535070 (
ENST00000437136
)
(Polyadenylate-binding protein 4 isoform 1.)
genome : 40,026,488 - 40,030,163 (3,676)
query : 1 - 876 (876/876)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, nucl 9.5, cyto_nucl 7.5, E.R._mito 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000457)
HIX0000457
HIT000595955 (
ENST00000492468
)
(Polyadenylate-binding protein 4 isoform 3.)
genome : 40,026,488 - 40,029,710 (3,223)
query : 1 - 2,257 (2,257/2,257)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18, extr 7, nucl 4.5, cyto_nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000457)
HIX0000457
HIT000585979 (
ENST00000482028
)
(Conserved hypothetical protein.)
genome : 40,026,488 - 40,027,682 (1,195)
query : 1 - 633 (633/633)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, mito 6, cyto 5, cyto_pero 4, mito_nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000457)
HIX0000457
HIT000328897
(
AB208962
)
(Polyadenylate-binding protein 4; PABP-4; Poly(A)-binding protein 4; Activated-platelet protein 1; APP-1; Inducible poly(A)-binding protein; iPABP;)
genome : 40,026,492 - 40,033,480 (6,989)
query : 9 - 1,393 (1,385/1,393)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000504 : RNA recognition motif domain
IPR002004 : Polyadenylate-binding protein/Hyperplastic disc protein
IPR012677 : Nucleotide-binding alpha-beta plait domain
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
0003723 : Molecular Function : RNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31.5, cyto_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000457)
HIX0000457
HIT000045799
(
AK125926
)
(Polyadenylate-binding protein 4 isoform 3.)
genome : 40,026,492 - 40,030,198 (3,707)
query : 1 - 3,588 (3,588/3,588)
2 exons
identity = 0.999
3'(1.000;0.999)5'
coverage = 1.000
InterPro :
IPR002004 : Polyadenylate-binding protein/Hyperplastic disc protein
GO :
0003723 : Molecular Function : RNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17.5, cyto_nucl 13, cyto 7.5, extr 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000457)
HIX0000457
HIT000015977
(
AK091110
)
(Polyadenylate-binding protein 4 isoform 3.)
genome : 40,026,492 - 40,029,710 (3,219)
query : 1 - 2,253 (2,253/2,253)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;0.999)5'
coverage = 1.000
InterPro :
IPR002004 : Polyadenylate-binding protein/Hyperplastic disc protein
GO :
0003723 : Molecular Function : RNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 14.5, nucl 5.5, extr 5, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000457)
HIX0000457
HIT000219353
(
U33818
)
(Polyadenylate-binding protein 4; PABP-4; Poly(A)-binding protein 4; Activated-platelet protein 1; APP-1; Inducible poly(A)-binding protein; iPABP;)
genome : 40,026,502 - 40,041,659 (15,158)
query : 118 - 2,394 (2,277/2,394)
16 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 0.951
InterPro :
IPR000504 : RNA recognition motif domain
IPR002004 : Polyadenylate-binding protein/Hyperplastic disc protein
IPR006515 : Polyadenylate binding protein, human types 1, 2, 3, 4
IPR012677 : Nucleotide-binding alpha-beta plait domain
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
0003723 : Molecular Function : RNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30.5, cyto_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000457)
HIX0000457
HIT000629338 (
ENST00000530186
)
(Polyadenylate-binding protein 4; PABP-4; Poly(A)-binding protein 4; Activated-platelet protein 1; APP-1; Inducible poly(A)-binding protein; iPABP;)
genome : 40,027,224 - 40,027,860 (637)
query : 1 - 352 (352/352)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13, cyto 12.5, nucl 10.5, extr 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000457)
HIX0000457
HIT000519621 (
ENST00000421687
)
(Polyadenylate-binding protein 4; PABP-4; Poly(A)-binding protein 4; Activated-platelet protein 1; APP-1; Inducible poly(A)-binding protein; iPABP;)
genome : 40,027,359 - 40,038,156 (10,798)
query : 1 - 1,663 (1,663/1,663)
14 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000457)
HIX0000457
HIT000588398 (
ENST00000484555
)
(Polyadenylate-binding protein 4; PABP-4; Poly(A)-binding protein 4; Activated-platelet protein 1; APP-1; Inducible poly(A)-binding protein; iPABP;)
genome : 40,028,056 - 40,029,796 (1,741)
query : 1 - 450 (450/450)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000457)
HIX0000457
HIT000624291 (
ENST00000525045
)
(Polyadenylate-binding protein 4; PABP-4; Poly(A)-binding protein 4; Activated-platelet protein 1; APP-1; Inducible poly(A)-binding protein; iPABP;)
genome : 40,029,118 - 40,030,905 (1,788)
query : 1 - 765 (765/765)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 21, cyto 6, extr 3, cyto_pero 3, cyto_plas 3,
cyto_golg 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000457)
HIX0000457
HIT000626913 (
ENST00000527718
)
(Polyadenylate-binding protein 4 isoform 1.)
genome : 40,029,286 - 40,034,529 (5,244)
query : 1 - 746 (746/746)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000457)
HIX0000457
HIT000581699 (
ENST00000477556
)
(Polyadenylate-binding protein 4; PABP-4; Poly(A)-binding protein 4; Activated-platelet protein 1; APP-1; Inducible poly(A)-binding protein; iPABP;)
genome : 40,029,288 - 40,030,200 (913)
query : 1 - 413 (413/413)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto_nucl 7.5, nucl 6.5, cyto 5,
cyto_mito 4.66667, cyto_pero 4.33333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000457)
HIX0000457
HIT000387852
(
BC118568
)
(Polyadenylate-binding protein 4 isoform 3.)
genome : 40,029,360 - 40,034,612 (5,253)
query : 15 - 786 (772/787)
6 exons
identity = 0.992
3'(0.909;1.000;1.000;1.000;1.000;0.993)5'
coverage = 0.981
InterPro :
IPR000504 : RNA recognition motif domain
IPR012677 : Nucleotide-binding alpha-beta plait domain
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000457)
HIX0000457
HIT000338546
(
BC106908
)
(Polyadenylate-binding protein 4 isoform 1.)
genome : 40,029,360 - 40,034,612 (5,253)
query : 15 - 873 (859/873)
7 exons
identity = 0.993
3'(0.909;1.000;1.000;1.000;1.000;1.000;0.993)5'
coverage = 0.984
InterPro :
IPR000504 : RNA recognition motif domain
IPR012677 : Nucleotide-binding alpha-beta plait domain
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000457)
HIX0000457
HIT000566453 (
ENST00000461578
)
(Polyadenylate-binding protein 4; PABP-4; Poly(A)-binding protein 4; Activated-platelet protein 1; APP-1; Inducible poly(A)-binding protein; iPABP;)
genome : 40,029,468 - 40,030,208 (741)
query : 1 - 193 (193/193)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto_nucl 8.66667, nucl 8.5, cyto 5.5,
cyto_pero 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000457)
HIX0000457
HIT000587643 (
ENST00000483770
)
(Polyadenylate-binding protein 4 isoform 1.)
genome : 40,029,905 - 40,030,855 (951)
query : 1 - 476 (476/476)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 28, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000457)
HIX0000457
HIT000624898 (
ENST00000525669
)
(Embryonic polyadenylate-binding protein A; Embryonic poly(A)-binding protein A; ePAB-A; ePABP-A; XePABP-A;)
genome : 40,030,057 - 40,034,528 (4,472)
query : 1 - 582 (582/582)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 26, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000457)
HIX0000457
HIT000574914 (
ENST00000470443
)
(Polyadenylate-binding protein 4; PABP-4; Poly(A)-binding protein 4; Activated-platelet protein 1; APP-1; Inducible poly(A)-binding protein; iPABP;)
genome : 40,030,778 - 40,041,453 (10,676)
query : 1 - 1,212 (1,212/1,212)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000457)
HIX0160328
HIT000513189 (
ENST00000415255
)
(Conserved hypothetical protein.)
genome : 40,030,832 - 40,038,875 (8,044)
query : 1 - 551 (551/551)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 19, cyto 6, cyto_nucl 5.83333, nucl 4.5,
cyto_pero 3.83333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0160328)
HIX0000457
HIT000100461
(
D12799
)
(Polyadenylate-binding protein 4; PABP-4; Poly(A)-binding protein 4; Activated-platelet protein 1; APP-1; Inducible poly(A)-binding protein; iPABP;)
genome : 40,030,882 - 40,035,610 (4,729)
query : 1 - 574 (574/581)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.988
InterPro :
IPR000504 : RNA recognition motif domain
IPR012677 : Nucleotide-binding alpha-beta plait domain
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000457)
HIX0000457
HIT000613190 (
ENST00000513632
)
(Polyadenylate-binding protein 4; PABP-4; Poly(A)-binding protein 4; Activated-platelet protein 1; APP-1; Inducible poly(A)-binding protein; iPABP;)
genome : 40,030,971 - 40,034,080 (3,110)
query : 1 - 738 (738/738)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000457)
HIX0077481
HIT000367258 (
NR_002983
)
(Non-protein coding transcript.)
genome : 40,033,046 - 40,033,182 (137)
query : 1 - 137 (137/137)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0077481)
HIX0077481
HIT000383026
(
AJ609480
)
Representative transcript
(Non-protein coding transcript.)
genome : 40,033,046 - 40,033,182 (137)
query : 1 - 137 (137/137)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0077481)
HIX0077481
HIT000346189 (
ENST00000364587
)
(Non-protein coding transcript.)
genome : 40,033,046 - 40,033,180 (135)
query : 1 - 135 (135/135)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0077481)
HIX0000457
HIT000624977 (
ENST00000525751
)
(Polyadenylate-binding protein 4-like; PABP-4-like; Poly(A)-binding protein 4-like;)
genome : 40,034,370 - 40,036,847 (2,478)
query : 1 - 556 (556/556)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000457)
HIX0000457
HIT000578672 (
ENST00000474378
)
(Polyadenylate-binding protein 4; PABP-4; Poly(A)-binding protein 4; Activated-platelet protein 1; APP-1; Inducible poly(A)-binding protein; iPABP;)
genome : 40,034,497 - 40,038,090 (3,594)
query : 1 - 591 (591/591)
6 exons
identity = 0.993
3'(1.000;1.000;1.000;1.000;0.961;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000457)
HIX0000457
HIT000628380 (
ENST00000529216
)
(Polyadenylate-binding protein 4; PABP-4; Poly(A)-binding protein 4; Activated-platelet protein 1; APP-1; Inducible poly(A)-binding protein; iPABP;)
genome : 40,034,534 - 40,036,867 (2,334)
query : 1 - 317 (317/317)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14, cyto 10, extr 5, cyto_pero 5, cyto_plas 5,
cyto_golg 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000457)
HIX0000457
HIT000596003 (
ENST00000492519
)
(Polyadenylate-binding protein 4; PABP-4; Poly(A)-binding protein 4; Activated-platelet protein 1; APP-1; Inducible poly(A)-binding protein; iPABP;)
genome : 40,035,167 - 40,035,662 (496)
query : 1 - 323 (323/323)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000457)
HIX0000457
HIT000549025 (
ENST00000451091
)
(Polyadenylate-binding protein 4; PABP-4; Poly(A)-binding protein 4; Activated-platelet protein 1; APP-1; Inducible poly(A)-binding protein; iPABP;)
genome : 40,038,065 - 40,042,462 (4,398)
query : 1 - 898 (898/898)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16.5, cyto 13.5, nucl 12.5, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000457)
HIX0203871
HIT000630376 (
ENST00000531243
)
(Conserved hypothetical protein.)
genome : 40,041,508 - 40,042,459 (952)
query : 1 - 634 (634/634)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 15.5, nucl 8.5, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0203871)
HIX0214375
HIT000644889 (
ENST00000545844
)
(Microtubule-actin cross-linking factor 1 family protein.)
genome : 39,549,034 - 39,952,789 (403,756)
query : 1 - 17,724 (17,724/17,724)
93 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21.5, cyto_nucl 16, cyto 9.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214375)
HIX0214375
HIT000680882 (
ENST00000567887
)
(Microtubule-actin cross-linking factor 1 family protein.)
genome : 39,549,734 - 39,952,849 (403,116)
query : 1 - 24,319 (24,319/24,319)
100 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.934;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 14, nucl 9, cyto_mito 8.5, plas 3, extr_plas 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214375)
HIX0214375
HIT000354195 (
ENST00000372915
)
(Microtubule-actin cross-linking factor 1 family protein.)
genome : 39,549,804 - 39,952,652 (402,849)
query : 1 - 23,440 (23,440/23,440)
96 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 14, nucl 9, cyto_mito 8.5, plas 3, extr_plas 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214375)
HIX0214375
HIT000121404 (
ENST00000317713
)
(Microtubule-actin cross-linking factor 1 family protein.)
genome : 39,549,839 - 39,952,789 (402,951)
query : 1 - 17,668 (17,668/17,668)
92 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21.5, cyto_nucl 16, cyto 9.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214375)
HIX0214375
HIT000638050 (
ENST00000539005
)
(Microtubule-actin cross-linking factor 1 family protein.)
genome : 39,549,839 - 39,952,789 (402,951)
query : 1 - 17,278 (17,278/17,278)
90 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 16, cyto 10.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214375)
HIX0214375
HIT000071191
(
AF141968
)
Representative transcript
(Microtubule-actin cross-linking factor 1.)
genome : 39,587,971 - 39,952,112 (364,142)
query : 982 - 17,734 (16,753/17,734)
91 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.998)3'
coverage = 0.945
InterPro :
IPR001589 : Actinin-type actin-binding domain, conserved site
IPR001715 : Calponin homology domain
IPR002017 : Spectrin repeat
IPR002048 : EF-hand domain
IPR003108 : Growth-arrest-specific protein 2 domain
IPR011992 : EF-hand domain pair
IPR018159 : Spectrin/alpha-actinin
IPR018247 : EF-Hand 1, calcium-binding site
IPR028408 : Microtubule-actin cross-linking factor 1
GO :
0003779 : Molecular Function : actin binding
0005509 : Molecular Function : calcium ion binding
0005515 : Molecular Function : protein binding
0007050 : Biological Process : cell cycle arrest
0008017 : Molecular Function : microtubule binding
0016055 : Biological Process : Wnt signaling pathway
0016887 : Molecular Function : ATPase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17.5, cyto_nucl 14.5, cyto 8.5, cysk 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214375)
HIX0214375
HIT000677416 (
ENST00000564288
)
(Microtubule-actin cross-linking factor 1 family protein.)
genome : 39,669,918 - 39,952,849 (282,932)
query : 1 - 24,828 (24,828/24,828)
100 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.934;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 9, extr 6, pero 4, cyto 3.5, nucl 3, cyto_mito 3,
E.R. 2.5, lyso 2, E.R._golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214375)
HIX0214375
HIT000077229
(
AF317696
)
(Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5; 620 kDa actin-binding protein; ABP620; Actin cross-linking family protein 7; Macrophin-1; Trabeculin-alpha;)
genome : 39,796,810 - 39,952,659 (155,850)
query : 1 - 19,134 (19,134/19,153)
62 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.934;
1.000;1.000;0.994)3'
coverage = 1.000
InterPro :
IPR001101 : Plectin repeat
IPR002017 : Spectrin repeat
IPR002048 : EF-hand domain
IPR003108 : Growth-arrest-specific protein 2 domain
IPR011992 : EF-hand domain pair
IPR018159 : Spectrin/alpha-actinin
IPR018247 : EF-Hand 1, calcium-binding site
IPR028408 : Microtubule-actin cross-linking factor 1
GO :
0003779 : Molecular Function : actin binding
0005509 : Molecular Function : calcium ion binding
0005515 : Molecular Function : protein binding
0005856 : Cellular Component : cytoskeleton
0007050 : Biological Process : cell cycle arrest
0008017 : Molecular Function : microtubule binding
0016055 : Biological Process : Wnt signaling pathway
0016887 : Molecular Function : ATPase activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 10.5, cyto_mito 6.5, E.R. 6, pero 6, nucl 3,
plas 2, golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214375)
HIX0214375
HIT000006680
(
AK023406
)
(Spectrin repeat containing protein.)
genome : 39,916,795 - 39,951,742 (34,948)
query : 1 - 2,036 (2,036/2,036)
11 exons
identity = 0.992
5'(1.000;0.992;0.923;0.995;1.000;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR002017 : Spectrin repeat
IPR018159 : Spectrin/alpha-actinin
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24, cyto_nucl 18.5, cyto 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214375)
HIX0214375
HIT000313544 (
ENST00000360115
)
(EF-hand domain pair containing protein.)
genome : 39,920,579 - 39,952,659 (32,081)
query : 13 - 2,824 (2,812/2,824)
10 exons
identity = 0.992
5'(1.000;1.000;0.951;0.975;1.000;1.000;0.934;
1.000;1.000;1.000)3'
coverage = 0.996
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto_nucl 18, cyto 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214375)
HIX0214375
HIT000544210 (
ENST00000446276
)
(EF-hand domain pair containing protein.)
genome : 39,924,795 - 39,952,659 (27,865)
query : 1 - 2,559 (2,559/2,559)
9 exons
identity = 0.996
5'(1.000;1.000;1.000;1.000;0.934;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21.5, cyto_nucl 13, mito 4, cyto 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214375)
HIX0214375
HIT000264734
(
BC071925
)
(Growth-arrest-specific protein 2 domain containing protein.)
genome : 39,926,416 - 39,952,655 (26,240)
query : 1 - 2,205 (2,205/2,245)
7 exons
identity = 0.996
5'(1.000;1.000;1.000;0.934;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR002048 : EF-hand domain
IPR003108 : Growth-arrest-specific protein 2 domain
IPR011992 : EF-hand domain pair
IPR018247 : EF-Hand 1, calcium-binding site
GO :
0005509 : Molecular Function : calcium ion binding
0007050 : Biological Process : cell cycle arrest
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14.5, cyto_nucl 13.5, cyto 11.5, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214375)
HIX0214375
HIT000539980 (
ENST00000442046
)
(EF-hand domain containing protein.)
genome : 39,926,419 - 39,952,659 (26,241)
query : 1 - 2,299 (2,299/2,299)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, cyto_nucl 17, cyto 10
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214375)
HIX0214375
HIT000492478
(
AK297854
)
(Growth-arrest-specific protein 2 domain containing protein.)
genome : 39,927,622 - 39,951,614 (23,993)
query : 1 - 1,046 (1,046/1,046)
6 exons
identity = 0.991
5'(1.000;1.000;0.934;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR003108 : Growth-arrest-specific protein 2 domain
GO :
0007050 : Biological Process : cell cycle arrest
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 13.5, nucl 11, extr 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214375)
HIX0214375
HIT000033150
(
BC007330
)
(Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5; 620 kDa actin-binding protein; ABP620; Actin cross-linking family protein 7; Macrophin-1; Trabeculin-alpha;)
genome : 39,929,282 - 39,951,892 (22,611)
query : 16 - 1,346 (1,331/1,364)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.988
InterPro :
IPR003108 : Growth-arrest-specific protein 2 domain
GO :
0007050 : Biological Process : cell cycle arrest
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13, nucl 12.5, cyto 12.5, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214375)
HIX0214375
HIT000338954
(
BC107866
)
(Growth-arrest-specific protein 2 domain containing protein.)
genome : 39,929,326 - 39,951,875 (22,550)
query : 4 - 1,273 (1,270/1,300)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.998
InterPro :
IPR003108 : Growth-arrest-specific protein 2 domain
GO :
0007050 : Biological Process : cell cycle arrest
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, nucl 11, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214375)
HIX0214467
HIT000318512 (
NM_181809
)
(Transforming growth factor-beta-related family protein.)
genome : 39,957,318 - 39,995,540 (38,223)
query : 1 - 5,625 (5,625/5,642)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, pero 5, E.R. 3, mito 2, lyso 2, golg 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214467)
HIX0178419
pHIT000071573 ( pHIT000071573 )
Representative transcript
(Hypothetical protein.)
genome : 39,957,246 - 39,957,665 (420)
query : 1 - 420 (420/420)
1 exon
SOSUI :
SOLUBLE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0178419)
CAGE tag :
H04BA79M0209,H05BA05K2202,H05BC44A1111
H05BD23B1302,H05BE95H0709
AL137853.12
39920001-39924910 F +
NCBI
AL365277.23
39924911-40038878 F +
NCBI
AL845289.3
40038879-40053147 F +
NCBI
AL035404.20
40053148-40080000 F +
NCBI