bases per tick :
500
200
100
50
20
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kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0213955
HIT000389898
(
BC128534
)
Representative transcript
(Conserved hypothetical protein.)
genome : 44,878,050 - 45,079,879 (201,830)
query : 10 - 397 (388/413)
2 exons
identity = 1.000
5'(1.000)3'
coverage = 0.939
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23, cyto_nucl 14.5, extr 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213955)
HIX0023784
HIT000048328
(
AK128455
)
Representative transcript
(Conserved hypothetical protein.)
genome : 44,964,642 - 44,969,005 (4,364)
query : 1 - 4,207 (4,207/4,207)
2 exons
identity = 0.991
3'(0.993;0.985)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, cyto_nucl 5.83333, nucl 4.5, cyto 4, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023784)
HIX0214064
HIT000693263 (
ENST00000581357
)
(Non-protein coding transcript.)
genome : 45,011,165 - 45,011,224 (60)
query : 1 - 60 (60/60)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214064)
HIX0214064
HIT000727251 (
NR_049849
)
(Non-protein coding transcript.)
genome : 45,011,165 - 45,011,224 (60)
query : 1 - 60 (60/60)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214064)
HIX0213902
HIT000599591 (
ENST00000496262
)
(Conserved hypothetical protein.)
genome : 45,079,937 - 45,092,708 (12,772)
query : 1 - 819 (819/840)
3 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11.5, cyto_nucl 11, extr 10, cyto 9.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213902)
HIX0000517
HIT000309534 (
ENST00000355387
)
(E3 ubiquitin-protein ligase RNF220; EC=6.3.2.-; RING finger protein 220;)
genome : 44,870,866 - 45,117,395 (246,530)
query : 1 - 3,099 (3,099/3,099)
15 exons
identity = 0.999
5'(1.000)3'
coverage = 1.000
EC number :
EC 6.3.2.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, extr 11, cyto_nucl 9.5, cyto 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000517)
HIX0000517
HIT000013038
(
AK056424
)
(E3 ubiquitin-protein ligase RNF220; EC=6.3.2.-; RING finger protein 220;)
genome : 44,870,927 - 45,117,395 (246,469)
query : 1 - 3,044 (3,044/3,044)
15 exons
identity = 0.995
5'(1.000)3'
coverage = 1.000
EC number :
EC 6.3.2.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, extr 11, cyto_nucl 9.5, cyto 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000517)
HIX0000517
HIT000093357
(
BC034221
)
Representative transcript
(E3 ubiquitin-protein ligase RNF220; EC=6.3.2.-; RING finger protein 220;)
genome : 44,870,960 - 45,117,396 (246,437)
query : 1 - 3,010 (3,010/3,025)
15 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
EC number :
EC 6.3.2.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, extr 11, cyto_nucl 9.5, cyto 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000517)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB170874
Gallus
sp. (Chicken) : AJ851812
Mus
sp. (Mouse) : BC056359
Bos
sp. (Cow) : BT026262
Pongo
sp. (Orangutan) : CR858394
Monodelphis
sp. (Opossum) : ENSMODT00000003325
Oryzias
sp. (Medaka) : ENSORLT00000006862
Oryzias
sp. (Medaka) : ENSORLT00000015759
Equus
sp. (Horse) : XM_001916272
Pan
sp. (Chimpanzee) : XM_513101
Canis
sp. (Dog) : XM_845722
HIX0000517
HIT000206983 (
NM_018150
)
(E3 ubiquitin-protein ligase RNF220; EC=6.3.2.-; RING finger protein 220;)
genome : 44,870,960 - 45,117,396 (246,437)
query : 1 - 3,010 (3,010/3,025)
15 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
EC number :
EC 6.3.2.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, extr 11, cyto_nucl 9.5, cyto 2.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000517)
HIX0000517
HIT000315051 (
ENST00000361799
)
(E3 ubiquitin-protein ligase RNF220; EC=6.3.2.-; RING finger protein 220;)
genome : 44,870,960 - 45,117,395 (246,436)
query : 1 - 3,009 (3,009/3,009)
15 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
EC number :
EC 6.3.2.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, extr 11, cyto_nucl 9.5, cyto 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000517)
HIX0000517
HIT000335843
(
BC098266
)
(E3 ubiquitin-protein ligase RNF220; EC=6.3.2.-; RING finger protein 220;)
genome : 44,871,158 - 45,117,040 (245,883)
query : 1 - 2,452 (2,452/2,452)
15 exons
identity = 0.998
5'(1.000)3'
coverage = 1.000
EC number :
EC 6.3.2.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, extr 11, cyto_nucl 9.5, cyto 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000517)
HIX0000517
HIT000335877
(
BC098300
)
(E3 ubiquitin-protein ligase RNF220; EC=6.3.2.-; RING finger protein 220;)
genome : 44,871,158 - 45,117,040 (245,883)
query : 1 - 2,452 (2,452/2,452)
15 exons
identity = 0.998
5'(1.000)3'
coverage = 1.000
EC number :
EC 6.3.2.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, extr 11, cyto_nucl 9.5, cyto 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000517)
HIX0000517
HIT000353527 (
ENST00000372247
)
(E3 ubiquitin-protein ligase RNF220; EC=6.3.2.-; RING finger protein 220;)
genome : 44,877,770 - 45,117,396 (239,627)
query : 1 - 2,650 (2,650/2,650)
14 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
EC number :
EC 6.3.2.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, extr 11, cyto_nucl 9.5, cyto 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000517)
HIX0000517
HIT000009018
(
AK025744
)
(E3 ubiquitin-protein ligase RNF220.)
genome : 44,878,194 - 45,117,395 (239,202)
query : 1 - 2,226 (2,226/2,244)
14 exons
identity = 0.999
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14.5, cyto_nucl 14, cyto 10.5, extr 3, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000517)
HIX0000517
HIT000488035
(
AK293411
)
(E3 ubiquitin-protein ligase RNF220.)
genome : 44,889,496 - 45,116,734 (227,239)
query : 1 - 1,336 (1,336/1,336)
10 exons
identity = 0.988
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto_nucl 7, mito 6.5, nucl 6, cyto 6,
extr_plas 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000517)
HIX0000517
HIT000491852
(
AK297228
)
(E3 ubiquitin-protein ligase RNF220.)
genome : 44,889,712 - 45,116,737 (227,026)
query : 1 - 1,544 (1,544/1,544)
14 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto_nucl 16.5, cyto 10
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000517)
HIX0000517
HIT000540954 (
ENST00000443020
)
(E3 ubiquitin-protein ligase RNF220.)
genome : 44,889,712 - 45,116,737 (227,026)
query : 1 - 1,544 (1,544/1,544)
14 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto_nucl 16.5, cyto 10
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000517)
AL359373.21
44920001-44951856 F +
NCBI
AL596225.11
44951857-45080000 F +
NCBI