bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0213880
HIT000265836
(
BC080568
)
(Hypothetical short protein.)
genome : 70,032,868 - 70,190,278 (157,411)
query : 1 - 1,901 (1,901/1,918)
3 exons
identity = 0.998
5'(0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16, cyto 15, nucl 11, extr 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213880)
HIX0213880
HIT000488830
(
AK294206
)
(Protein LAP2; Densin-180-like protein; Erbb2-interacting protein; Erbin;)
genome : 70,033,956 - 70,339,385 (305,430)
query : 1 - 1,250 (1,250/1,250)
8 exons
identity = 0.998
5'(0.995)3'
coverage = 1.000
InterPro :
IPR001611 : Leucine-rich repeat
IPR025875 : Leucine rich repeat 4
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12, mito 8, extr 6, nucl 6, cyto_pero 6,
cyto_plas 6, cyto_golg 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213880)
HIX0213880
HIT000080851
(
AF498274
)
Representative transcript
(Protein LAP2; Densin-180-like protein; Erbb2-interacting protein; Erbin;)
genome : 70,034,133 - 70,340,687 (306,555)
query : 1 - 2,375 (2,375/2,376)
8 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
InterPro :
IPR001611 : Leucine-rich repeat
IPR025875 : Leucine rich repeat 4
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12, mito 8, extr 6, nucl 6, cyto_pero 6,
cyto_plas 6, cyto_golg 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213880)
HIX0213880
HIT000352238 (
ENST00000370958
)
(Leucine-rich repeat containing protein.)
genome : 70,034,133 - 70,340,687 (306,555)
query : 1 - 2,375 (2,375/2,375)
8 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12, mito 8, extr 6, nucl 6, cyto_pero 6,
cyto_plas 6, cyto_golg 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213880)
HIX0000691
HIT000118885 (
ENST00000310961
)
(Leucine-rich repeat-containing protein 7.)
genome : 70,034,081 - 70,589,171 (555,091)
query : 1 - 6,507 (6,507/6,507)
27 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, mito 11, nucl 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000691)
AL157406.19
69920001-69942301 F +
NCBI
AL359894.9
69942302-70080000 F +
NCBI