bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0001351
HIT000208600 (
NM_022100
)
(28S ribosomal protein S14, mitochondrial; MRP-S14; S14mt;)
genome : 174,982,095 - 174,992,591 (10,497)
query : 1 - 2,144 (2,144/2,160)
3 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, extr 7, cyto 5.5, cyto_nucl 5.5, nucl 4.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001351)
HIX0001351
HIT000659902 (
NR_037606
)
(Conserved hypothetical protein.)
genome : 174,982,095 - 174,992,591 (10,497)
query : 1 - 2,236 (2,236/2,252)
3 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, mito 8, cyto 3.5, cyto_nucl 3.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001351)
HIX0001351
HIT000580566 (
ENST00000476371
)
(28S ribosomal protein S14, mitochondrial; MRP-S14; S14mt;)
genome : 174,982,094 - 174,992,561 (10,468)
query : 1 - 2,115 (2,115/2,115)
3 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, extr 7, cyto 5.5, cyto_nucl 5.5, nucl 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001351)
HIX0001351
HIT000250085
(
AL049705
)
Representative transcript
(28S ribosomal protein S14, mitochondrial; MRP-S14; S14mt;)
genome : 174,983,128 - 174,992,561 (9,434)
query : 1 - 1,081 (1,081/1,081)
3 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
InterPro :
IPR001209 : Ribosomal protein S14
GO :
0003735 : Molecular Function : structural constituent of ribosome
0005622 : Cellular Component : intracellular
0005840 : Cellular Component : ribosome
0006412 : Biological Process : translation
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, extr 7, cyto 5.5, cyto_nucl 5.5, nucl 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001351)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK144195
Bos
sp. (Cow) : AY675077
Danio
sp. (Zebrafish) : BC122369
Gallus
sp. (Chicken) : BX933085
Tetraodon
sp. (Tetraodon) : CR631381
Oryzias
sp. (Medaka) : ENSORLT00000020325
Pongo
sp. (Orangutan) : ENSPPYT00000000580
Takifugu
sp. (Fugu) : SINFRUT00000161261
Rattus
sp. (Rat) : XM_001069236
Macaca
sp. (Macaque) : XM_001104412
Pan
sp. (Chimpanzee) : XM_001152337
Monodelphis
sp. (Opossum) : XM_001365493
Equus
sp. (Horse) : XM_001497781
Canis
sp. (Dog) : XM_537182
HIX0001351
HIT000429781
(
AK310915
)
(Conserved hypothetical protein.)
genome : 174,983,153 - 174,992,561 (9,409)
query : 1 - 1,148 (1,148/1,148)
3 exons
identity = 0.999
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, mito 8, cyto 3.5, cyto_nucl 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001351)
HIX0001351
HIT000348957 (
ENST00000367677
)
(Conserved hypothetical protein.)
genome : 174,983,381 - 174,992,551 (9,171)
query : 1 - 910 (910/910)
3 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, mito 8, cyto 3.5, cyto_nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001351)
HIX0001351
HIT000034577
(
BC009788
)
(28S ribosomal protein S14, mitochondrial; MRP-S14; S14mt;)
genome : 174,983,633 - 174,992,554 (8,922)
query : 4 - 571 (568/598)
3 exons
identity = 0.995
3'(1.000)5'
coverage = 0.995
InterPro :
IPR001209 : Ribosomal protein S14
GO :
0003735 : Molecular Function : structural constituent of ribosome
0005622 : Cellular Component : intracellular
0005840 : Cellular Component : ribosome
0006412 : Biological Process : translation
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, extr 7, cyto 5.5, cyto_nucl 5.5, nucl 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001351)
HIX0001351
HIT000430625
(
AK311759
)
(28S ribosomal protein S14, mitochondrial; MRP-S14; S14mt;)
genome : 174,983,805 - 174,992,561 (8,757)
query : 1 - 404 (404/404)
3 exons
identity = 0.998
3'(1.000)5'
coverage = 1.000
InterPro :
IPR001209 : Ribosomal protein S14
GO :
0003735 : Molecular Function : structural constituent of ribosome
0005622 : Cellular Component : intracellular
0005840 : Cellular Component : ribosome
0006412 : Biological Process : translation
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, extr 7, cyto 5.5, cyto_nucl 5.5, nucl 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001351)
Z99297.1
174992001-175008000 F -
NCBI
L2
MER21B
AluSx1
MER21B
L1MB3
L2a
AT_rich
MIR
AluY
(TA)n
(TA)n
(TA)n
(TA)n
AluJb
L1M5
AluJb
L1M5
AT_rich
(CA)n
(CA)n
MER45B
MER45B
MER45B
L2a
LTR16E2
AluY
MER91A
MLT1C
L2a
AluSz
THE1C
L2a
AluJb