bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0199865
HIT000012963
(
AK056349
)
genome : 239,549,865 - 240,049,896 (500,032)
query : 1 - 2,005 (2,005/2,005)
9 exons
identity = 0.998
5'()3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199865)
HIX0199865
HIT000573132 (
ENST00000468573
)
genome : 239,549,865 - 240,049,896 (500,032)
query : 1 - 2,005 (2,005/2,005)
9 exons
identity = 1.000
5'()3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199865)
HIX0199865
HIT000106797 (
ENST00000255380
)
genome : 239,792,373 - 240,078,750 (286,378)
query : 1 - 8,778 (8,778/8,778)
5 exons
identity = 1.000
5'()3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199865)
HIX0199865
HIT000197756 (
NM_000740
)
genome : 239,792,373 - 240,072,716 (280,344)
query : 1 - 2,744 (2,744/2,757)
5 exons
identity = 1.000
5'()3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199865)
HIX0199865
HIT000076060
(
AF279779
)
genome : 239,792,373 - 240,071,899 (279,527)
query : 1 - 1,926 (1,926/1,930)
5 exons
identity = 0.998
5'()3'
coverage = 0.998
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199865)
HIX0199865
HIT000545954 (
ENST00000448020
)
genome : 239,882,843 - 240,071,080 (188,238)
query : 1 - 587 (587/587)
3 exons
identity = 1.000
5'()3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199865)
HIX0199865
HIT000388223
(
BC121026
)
genome : 239,990,555 - 240,072,597 (82,043)
query : 1 - 1,989 (1,989/1,989)
2 exons
identity = 1.000
5'()3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199865)
HIX0199865
HIT000388224
(
BC121027
)
genome : 239,990,555 - 240,072,597 (82,043)
query : 1 - 1,989 (1,989/1,989)
2 exons
identity = 1.000
5'()3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199865)
AC104460.2
239992001-240008000 F -
NCBI
L2a
MIRc
AT_rich
MIR
MIRb
AluSx3
MIR3
MER41C
LTR88c
(CA)n
AluSx
L2c
CT-rich
L2c
MER112
AluSc
L3
L2c
MIRb
AT_rich
X7A_LINE
AluSx1
(CA)n
L2c
L2c
(T)n
(TA)n
L1MA8
L3b
L3b
MIR