bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0214236
HIT000600726 (
ENST00000497451
)
(Conserved hypothetical protein.)
genome : 49,992,900 - 50,317,190 (324,291)
query : 1 - 625 (625/625)
3 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, mito 10, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214236)
HIX0021249
HIT000210880 (
NM_032785
)
genome : 48,998,527 - 50,489,626 (1,491,100)
query : 1 - 2,988 (2,988/2,988)
14 exons
identity = 1.000
3'()5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021249)
HIX0021249
HIT000019681
(
AK094826
)
genome : 48,998,527 - 50,489,585 (1,491,059)
query : 1 - 2,948 (2,948/2,948)
14 exons
identity = 0.999
3'()5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021249)
HIX0021249
HIT000353119 (
ENST00000371839
)
genome : 48,998,527 - 50,489,585 (1,491,059)
query : 1 - 2,947 (2,947/2,947)
14 exons
identity = 1.000
3'()5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021249)
HIX0021249
HIT000489257
(
AK294633
)
genome : 48,999,209 - 50,489,626 (1,490,418)
query : 1 - 2,278 (2,278/2,278)
13 exons
identity = 1.000
3'()5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021249)
HIX0021249
HIT000489018
(
AK294394
)
genome : 48,999,405 - 50,489,585 (1,490,181)
query : 1 - 2,079 (2,079/2,079)
13 exons
identity = 0.998
3'()5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021249)
HIX0021249
HIT000490845
(
AK296221
)
genome : 48,999,793 - 50,489,626 (1,489,834)
query : 1 - 1,511 (1,511/1,511)
12 exons
identity = 0.994
3'()5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021249)
HIX0021249
HIT000353118 (
ENST00000371838
)
genome : 49,099,880 - 50,489,585 (1,389,706)
query : 1 - 1,353 (1,353/1,353)
9 exons
identity = 1.000
3'()5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021249)
HIX0021249
HIT000051495
(
BC035739
)
genome : 49,283,180 - 50,489,572 (1,206,393)
query : 1 - 1,453 (1,453/1,500)
7 exons
identity = 0.999
3'()5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021249)
HIX0021249
HIT000353116 (
ENST00000371836
)
genome : 49,283,179 - 50,489,572 (1,206,394)
query : 1 - 1,454 (1,454/1,454)
7 exons
identity = 1.000
3'()5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021249)
AL356789.16
49992001-50008000 F +
NCBI
L2c
L2c
AluSz6
L2c
L2b
(CAT)n
L1PA4
MIRc
MER81
MIR
MIR3
MIRb
L2a
MIRb
Plat_L3
MIR
L1M1
L1ME4a
(TATAA)n
AluY
(TG)n
L1PB4
AluSx1
L1PB4
AluY
L1PB4
L1ME4a
HAL1b
L2b
MIRb
LTR12C