Clickable map CGI

HIX0001635
HIT000199994 ( NM_003133 )
  (Signal recognition particle 9 kDa protein; SRP9;)
  genome : 225,965,515 - 225,978,168 (12,654)
  query : 1 - 1,496 (1,496/1,524)
  3 exons
  identity = 1.000
  5'(1.000;1.000;1.000)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 19.5, extr 11, cyto_nucl 10.5
  RefSeq
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001635)

HIX0001635
HIT000559706 ( NM_001130440 )
  (Signal recognition particle 9 kDa protein; SRP9;)
  genome : 225,965,515 - 225,978,168 (12,654)
  query : 1 - 1,620 (1,620/1,648)
  4 exons
  identity = 1.000
  5'(1.000;1.000;1.000;1.000)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 15, cyto 12, cyto_nucl 8.5, nucl 3
  RefSeq
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001635)

HIX0001635
HIT000262377 ( BC066957 )
  (Signal recognition particle 9 kDa protein; SRP9;)
  genome : 225,965,528 - 225,978,159 (12,632)
  query : 1 - 1,474 (1,474/1,491)
  3 exons
  identity = 0.999
  5'(0.995;1.000;1.000)3'
  coverage = 0.999
  InterPro :
    IPR008832 : Signal recognition particle, SRP9 subunit
    IPR009018 : Signal recognition particle, SRP9/SRP14 subunit
  GO :
    0006614 : Biological Process : SRP-dependent cotranslational protein targeting to membrane
    0008312 : Molecular Function : 7S RNA binding
    0045900 : Biological Process : negative regulation of translational elongation
    0048500 : Cellular Component : signal recognition particle
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 19.5, extr 11, cyto_nucl 10.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001635)

HIX0001635
HIT000033795 ( BC008443 )
  (Signal recognition particle 9 kDa protein; SRP9;)
  genome : 225,965,531 - 225,978,164 (12,634)
  query : 1 - 1,476 (1,476/1,507)
  3 exons
  identity = 1.000
  5'(1.000;1.000;1.000)3'
  coverage = 0.999
  InterPro :
    IPR008832 : Signal recognition particle, SRP9 subunit
    IPR009018 : Signal recognition particle, SRP9/SRP14 subunit
  GO :
    0006614 : Biological Process : SRP-dependent cotranslational protein targeting to membrane
    0008312 : Molecular Function : 7S RNA binding
    0045900 : Biological Process : negative regulation of translational elongation
    0048500 : Cellular Component : signal recognition particle
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 19.5, extr 11, cyto_nucl 10.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001635)

HIX0001635
HIT000395508 ( EF488978 )
  (Signal recognition particle 9 kDa protein; SRP9;)
  genome : 225,965,531 - 225,978,164 (12,634)
  query : 1 - 1,600 (1,600/1,631)
  4 exons
  identity = 1.000
  5'(1.000;1.000;1.000;1.000)3'
  coverage = 0.999
  InterPro :
    IPR008832 : Signal recognition particle, SRP9 subunit
    IPR009018 : Signal recognition particle, SRP9/SRP14 subunit
  GO :
    0006614 : Biological Process : SRP-dependent cotranslational protein targeting to membrane
    0008312 : Molecular Function : 7S RNA binding
    0045900 : Biological Process : negative regulation of translational elongation
    0048500 : Cellular Component : signal recognition particle
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 15, cyto 12, cyto_nucl 8.5, nucl 3
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001635)

HIX0001635
HIT000116846_01 ( ENST00000304786 )
  (Signal recognition particle 9 kDa protein; SRP9;)
  genome : 225,965,531 - 225,978,168 (12,638)
  query : 1 - 1,480 (1,480/1,480)
  3 exons
  identity = 1.000
  5'(1.000;1.000;1.000)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 19.5, extr 11, cyto_nucl 10.5
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001635)

HIX0001635
HIT000039337 ( BC021995 )
  (Signal recognition particle 9 kDa protein; SRP9;)
  genome : 225,965,539 - 225,978,168 (12,630)
  query : 5 - 1,600 (1,596/1,628)
  4 exons
  identity = 0.999
  5'(1.000;1.000;0.984;1.000)3'
  coverage = 0.998
  InterPro :
    IPR008832 : Signal recognition particle, SRP9 subunit
    IPR009018 : Signal recognition particle, SRP9/SRP14 subunit
  GO :
    0006614 : Biological Process : SRP-dependent cotranslational protein targeting to membrane
    0008312 : Molecular Function : 7S RNA binding
    0045900 : Biological Process : negative regulation of translational elongation
    0048500 : Cellular Component : signal recognition particle
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 17, cyto 8.5, extr_plas 8.5, cyto_nucl 7.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001635)

HIX0001635
HIT000065816 ( AF070649 )
  (Signal recognition particle 9 kDa protein; SRP9;)
  genome : 225,965,536 - 225,978,168 (12,633)
  query : 1 - 1,475 (1,475/1,492)
  3 exons
  identity = 1.000
  5'(1.000;1.000;1.000)3'
  coverage = 1.000
  InterPro :
    IPR008832 : Signal recognition particle, SRP9 subunit
    IPR009018 : Signal recognition particle, SRP9/SRP14 subunit
  GO :
    0006614 : Biological Process : SRP-dependent cotranslational protein targeting to membrane
    0008312 : Molecular Function : 7S RNA binding
    0045900 : Biological Process : negative regulation of translational elongation
    0048500 : Cellular Component : signal recognition particle
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 19.5, extr 11, cyto_nucl 10.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001635)

HIX0001635
HIT000338371 ( BC106005 )
  (Signal recognition particle 9 kDa protein; SRP9;)
  genome : 225,965,539 - 225,978,166 (12,628)
  query : 1 - 1,451 (1,451/1,506)
  3 exons
  identity = 1.000
  5'(1.000;1.000;1.000)3'
  coverage = 1.000
  InterPro :
    IPR008832 : Signal recognition particle, SRP9 subunit
    IPR009018 : Signal recognition particle, SRP9/SRP14 subunit
  GO :
    0006614 : Biological Process : SRP-dependent cotranslational protein targeting to membrane
    0008312 : Molecular Function : 7S RNA binding
    0045900 : Biological Process : negative regulation of translational elongation
    0048500 : Cellular Component : signal recognition particle
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 21.5, cyto_nucl 11.5, extr 10
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001635)

HIX0001635
HIT000348119 ( ENST00000366839 )
  (Signal recognition particle 9 kDa protein; SRP9;)
  genome : 225,965,539 - 225,978,168 (12,630)
  query : 1 - 1,596 (1,596/1,596)
  4 exons
  identity = 1.000
  5'(1.000;1.000;1.000;1.000)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 15, cyto 12, cyto_nucl 8.5, nucl 3
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001635)

HIX0001635
HIT000218579 ( U20998 )
  (Signal recognition particle 9 kDa protein; SRP9;)
  genome : 225,965,539 - 225,978,161 (12,623)
  query : 1 - 1,466 (1,466/1,466)
  3 exons
  identity = 0.997
  5'(0.989;1.000;0.998)3'
  coverage = 1.000
  InterPro :
    IPR008832 : Signal recognition particle, SRP9 subunit
    IPR009018 : Signal recognition particle, SRP9/SRP14 subunit
  GO :
    0006614 : Biological Process : SRP-dependent cotranslational protein targeting to membrane
    0008312 : Molecular Function : 7S RNA binding
    0045900 : Biological Process : negative regulation of translational elongation
    0048500 : Cellular Component : signal recognition particle
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 19.5, extr 11, cyto_nucl 10.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001635)

HIX0001635
HIT000036999 ( BC015094 )
  (Signal recognition particle 9 kDa protein; SRP9;)
  genome : 225,965,548 - 225,978,167 (12,620)
  query : 5 - 1,466 (1,462/1,497)
  3 exons
  identity = 1.000
  5'(1.000;1.000;1.000)3'
  coverage = 0.996
  InterPro :
    IPR008832 : Signal recognition particle, SRP9 subunit
    IPR009018 : Signal recognition particle, SRP9/SRP14 subunit
  GO :
    0006614 : Biological Process : SRP-dependent cotranslational protein targeting to membrane
    0008312 : Molecular Function : 7S RNA binding
    0045900 : Biological Process : negative regulation of translational elongation
    0048500 : Cellular Component : signal recognition particle
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 19.5, extr 11, cyto_nucl 10.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001635)

HIX0001635
HIT000039527 ( BC022415 )
  (Signal recognition particle 9 kDa protein; SRP9;)
  genome : 225,965,551 - 225,978,161 (12,611)
  query : 3 - 1,455 (1,453/1,485)
  3 exons
  identity = 1.000
  5'(1.000;1.000;1.000)3'
  coverage = 0.999
  InterPro :
    IPR008832 : Signal recognition particle, SRP9 subunit
    IPR009018 : Signal recognition particle, SRP9/SRP14 subunit
  GO :
    0006614 : Biological Process : SRP-dependent cotranslational protein targeting to membrane
    0008312 : Molecular Function : 7S RNA binding
    0045900 : Biological Process : negative regulation of translational elongation
    0048500 : Cellular Component : signal recognition particle
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 19.5, extr 11, cyto_nucl 10.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001635)

HIX0001635
HIT000422392 ( AK289595 )
  (Signal recognition particle 9 kDa protein; SRP9;)
  genome : 225,965,550 - 225,977,293 (11,744)
  query : 1 - 586 (586/586)
  3 exons
  identity = 1.000
  5'(1.000;1.000;1.000)3'
  coverage = 1.000
  InterPro :
    IPR008832 : Signal recognition particle, SRP9 subunit
    IPR009018 : Signal recognition particle, SRP9/SRP14 subunit
  GO :
    0006614 : Biological Process : SRP-dependent cotranslational protein targeting to membrane
    0008312 : Molecular Function : 7S RNA binding
    0045900 : Biological Process : negative regulation of translational elongation
    0048500 : Cellular Component : signal recognition particle
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 19.5, extr 11, cyto_nucl 10.5
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001635)

HIX0001635
HIT000261314 ( BC064351 )
  (Signal recognition particle 9 kDa protein isoform 1.)
  genome : 225,965,566 - 225,978,161 (12,596)
  query : 1 - 2,705 (2,705/2,719)
  3 exons
  identity = 0.994
  5'(1.000;1.000;0.994)3'
  coverage = 1.000
  InterPro :
    IPR008832 : Signal recognition particle, SRP9 subunit
    IPR009018 : Signal recognition particle, SRP9/SRP14 subunit
  GO :
    0006614 : Biological Process : SRP-dependent cotranslational protein targeting to membrane
    0008312 : Molecular Function : 7S RNA binding
    0045900 : Biological Process : negative regulation of translational elongation
    0048500 : Cellular Component : signal recognition particle
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 20.5, cyto_nucl 11.5, extr 10
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001635)

HIX0001635
HIT000024147 ( AL050363 )
  (Signal recognition particle 9 kDa protein; SRP9;)
  genome : 225,965,574 - 225,978,168 (12,595)
  query : 8 - 1,425 (1,418/1,444)
  3 exons
  identity = 0.997
  5'(1.000;1.000;0.997)3'
  coverage = 0.995
  InterPro :
    IPR008832 : Signal recognition particle, SRP9 subunit
    IPR009018 : Signal recognition particle, SRP9/SRP14 subunit
  GO :
    0006614 : Biological Process : SRP-dependent cotranslational protein targeting to membrane
    0008312 : Molecular Function : 7S RNA binding
    0045900 : Biological Process : negative regulation of translational elongation
    0048500 : Cellular Component : signal recognition particle
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 21.5, cyto_nucl 11.5, extr 10
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001635)

HIX0001635
HIT000262813 ( BC067845 )
  (Signal recognition particle 9 kDa protein; SRP9;)
  genome : 225,965,580 - 225,978,164 (12,585)
  query : 1 - 1,551 (1,551/1,567)
  4 exons
  identity = 0.999
  5'(1.000;1.000;0.992;0.999)3'
  coverage = 0.999
  InterPro :
    IPR008832 : Signal recognition particle, SRP9 subunit
    IPR009018 : Signal recognition particle, SRP9/SRP14 subunit
  GO :
    0006614 : Biological Process : SRP-dependent cotranslational protein targeting to membrane
    0008312 : Molecular Function : 7S RNA binding
    0045900 : Biological Process : negative regulation of translational elongation
    0048500 : Cellular Component : signal recognition particle
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 15, cyto 12, cyto_nucl 8.5, nucl 3
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001635)

HIX0001635
HIT000348118 ( ENST00000366838 )
  (Signal recognition particle 9 kDa protein; SRP9;)
  genome : 225,965,637 - 225,977,226 (11,590)
  query : 1 - 540 (540/540)
  4 exons
  identity = 1.000
  5'(1.000;1.000;1.000;1.000)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 25, cyto 6
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001635)

HIX0001635
HIT000543808_01 ( ENST00000445874 )
  (Signal recognition particle 9 kDa protein; SRP9;)
  genome : 225,965,643 - 225,977,061 (11,419)
  query : 1 - 261 (261/261)
  3 exons
  identity = 1.000
  5'(1.000;1.000;1.000)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 19.5, extr 11, cyto_nucl 10.5
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001635)

HIX0001635
HIT000089280 ( BC017414 )
  (Signal recognition particle 9 kDa protein isoform 2.)
  genome : 225,976,942 - 225,978,161 (1,220)
  query : 21 - 1,240 (1,220/1,269)
  1 exon
  identity = 1.000
  5'(1.000)3'
  coverage = 0.984
  InterPro :
    IPR008832 : Signal recognition particle, SRP9 subunit
    IPR009018 : Signal recognition particle, SRP9/SRP14 subunit
  GO :
    0006614 : Biological Process : SRP-dependent cotranslational protein targeting to membrane
    0008312 : Molecular Function : 7S RNA binding
    0045900 : Biological Process : negative regulation of translational elongation
    0048500 : Cellular Component : signal recognition particle
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 19.5, cyto_nucl 10.5, extr 10
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0001635)

AC099066.3
225963841-225979840 F +
NCBI

bases per tick : kb first site :
main : All Human Genes JIGSAW prediction ESTs assembly
homology : UCSC CCDS Pseudogene.org Conserved regions ( Segmental duplication P.troglodytes P.abelii M.mulatta M.musculus R.norvegicus C.familiaris E.caballus B.taurus M.domestica G.gallus D.rerio O.latipes T.nigroviridis T.rubripes )
gene prediction : FGENESH GenScan HMMgene tRNA
show... : SNPs ESTs(summary) ESTs(detail) CAGE tag(summary) CAGE tag(detail)
sequence viewer : = ( , )