bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0199783
HIT000205007 (
NM_014698
)
genome : 226,033,233 - 226,070,420 (37,188)
query : 1 - 4,453 (4,453/4,469)
25 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199783)
HIX0199783
HIT000348115 (
ENST00000366835
)
genome : 226,033,237 - 226,070,069 (36,833)
query : 1 - 4,098 (4,098/4,098)
25 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199783)
HIX0199783
HIT000000517
(
AB018335
)
genome : 226,033,240 - 226,070,048 (36,809)
query : 1 - 4,074 (4,074/4,074)
25 exons
identity = 0.999
3'(1.000;1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199783)
HIX0199783
HIT000040995
(
BC030245
)
genome : 226,034,333 - 226,070,053 (35,721)
query : 1 - 2,986 (2,986/3,023)
25 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199783)
HIX0199783
HIT000005776
(
AK022502
)
genome : 226,034,334 - 226,070,069 (35,736)
query : 1 - 3,001 (3,001/3,001)
25 exons
identity = 0.996
3'(1.000;1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199783)
HIX0199783
HIT000330724
(
AK222944
)
genome : 226,034,392 - 226,070,050 (35,659)
query : 1 - 2,924 (2,924/2,924)
25 exons
identity = 0.999
3'(1.000;1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199783)
HIX0199783
HIT000330714
(
AK222934
)
genome : 226,034,396 - 226,070,050 (35,655)
query : 1 - 2,920 (2,920/2,920)
25 exons
identity = 0.999
3'(1.000;1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199783)
HIX0199783
pHIT000003472 ( pHIT000003472 )
genome : 226,034,741 - 226,070,751 (36,011)
query : 1 - 2,394 (2,394/2,394)
18 exons
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199783)
CAGE tag :
H05BF25H1509
HIX0199988
HIT000040334
(
BC027883
)
genome : 226,073,982 - 226,076,833 (2,852)
query : 1 - 1,613 (1,613/1,644)
4 exons
identity = 0.999
3'(0.999;1.000;1.000;1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199988)
HIX0199988
HIT000208156 (
NM_020997
)
genome : 226,073,982 - 226,076,846 (2,865)
query : 1 - 1,626 (1,626/1,644)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199988)
HIX0199988
HIT000330494
(
AK222714
)
genome : 226,073,982 - 226,076,846 (2,865)
query : 1 - 1,626 (1,626/1,644)
4 exons
identity = 0.997
3'(0.996;1.000;0.992;1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199988)
HIX0199988
HIT000048876
(
AK129605
)
genome : 226,073,982 - 226,076,846 (2,865)
query : 1 - 1,329 (1,329/1,339)
4 exons
identity = 0.996
3'(1.000;1.000;0.906;1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199988)
HIX0199988
HIT000252917
(
AY358873
)
genome : 226,073,979 - 226,076,833 (2,855)
query : 1 - 1,616 (1,616/1,616)
4 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199988)
HIX0199988
HIT000110838 (
ENST00000272134
)
genome : 226,073,982 - 226,076,846 (2,865)
query : 1 - 1,626 (1,626/1,626)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199988)
HIX0199988
HIT000066480
(
AF081512
)
genome : 226,074,080 - 226,076,836 (2,757)
query : 1 - 1,518 (1,518/1,518)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199988)
HIX0199988
HIT000431981
(
AK313115
)
genome : 226,074,427 - 226,076,846 (2,420)
query : 1 - 1,181 (1,181/1,181)
4 exons
identity = 0.998
3'(1.000;1.000;0.992;1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199988)
HIX0199988
HIT000428129
(
AK309263
)
genome : 226,075,236 - 226,076,845 (1,610)
query : 2 - 827 (826/827)
2 exons
identity = 0.995
3'(0.994;0.997)5'
coverage = 0.999
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199988)
HIX0199988
HIT000595944 (
ENST00000492457
)
genome : 226,075,485 - 226,099,082 (23,598)
query : 1 - 512 (512/512)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199988)
HIX0178461
pHIT000003488 ( pHIT000003488 )
genome : 226,095,059 - 226,095,587 (529)
query : 1 - 204 (204/204)
2 exons
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0178461)
CAGE tag :
H27BB73M0712
HIX0200217
HIT000493469
(
AK298845
)
genome : 226,074,396 - 226,111,978 (37,583)
query : 1 - 1,625 (1,625/1,625)
8 exons
identity = 0.994
3'(1.000;1.000;1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200217)
HIX0200217
HIT000530854 (
ENST00000432920
)
genome : 226,074,396 - 226,111,978 (37,583)
query : 1 - 1,625 (1,625/1,625)
8 exons
identity = 0.995
3'(1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200217)
HIX0199783
pHIT000003472 ( pHIT000003472 )
genome : 226,034,741 - 226,070,751 (36,011)
query : 1 - 2,394 (2,394/2,394)
18 exons
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199783)
CAGE tag :
H05BC26O2108,H05BE15B0804,H05BE21D0907
H05BE93N0303,H05BF25H1509
HIX0178461
pHIT000003488 ( pHIT000003488 )
genome : 226,095,059 - 226,095,587 (529)
query : 1 - 204 (204/204)
2 exons
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0178461)
CAGE tag :
H27BA09B1306,H27BA27C0305,H27BB73M0712
AL117348.26
226066530-226106529 F +
NCBI