bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0000110
HIT000058663
(
AB021262
)
genome : 9,908,334 - 9,970,282 (61,949)
query : 1 - 2,961 (2,961/2,980)
6 exons
identity = 0.998
3'(0.998;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.994
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000110)
HIX0000110
HIT000358543 (
ENST00000377263
)
genome : 9,908,334 - 9,970,321 (61,988)
query : 1 - 3,000 (3,000/3,000)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000110)
HIX0000110
HIT000207833 (
NM_020248
)
genome : 9,908,334 - 9,970,316 (61,983)
query : 1 - 2,995 (2,995/2,995)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000110)
HIX0000110
HIT000316866 (
NM_001012329
)
genome : 9,908,334 - 9,970,316 (61,983)
query : 1 - 2,961 (2,961/2,961)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000110)
HIX0029452
HIT000552038 (
ENST00000454104
)
genome : 9,908,376 - 9,910,212 (1,837)
query : 1 - 424 (424/424)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0029452)
HIX0000110
HIT000503149
(
BC146892
)
genome : 9,909,597 - 9,932,150 (22,554)
query : 9 - 1,420 (1,412/1,420)
4 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000)5'
coverage = 0.994
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000110)
HIX0000110
HIT000503153
(
BC146896
)
genome : 9,909,597 - 9,932,150 (22,554)
query : 9 - 1,420 (1,412/1,420)
4 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000)5'
coverage = 0.994
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000110)
HIX0000110
HIT000636492 (
ENST00000537447
)
genome : 9,909,597 - 9,932,150 (22,554)
query : 1 - 1,412 (1,412/1,412)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000110)
HIX0000110
HIT000036626
(
BC014300
)
genome : 9,910,167 - 9,970,296 (60,130)
query : 9 - 1,116 (1,108/1,163)
5 exons
identity = 0.998
3'(0.997;1.000;1.000;1.000;1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000110)
HIX0000110
HIT000483801 (
ENST00000400904
)
genome : 9,910,167 - 9,970,394 (60,228)
query : 1 - 1,206 (1,206/1,206)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000110)
HIX0000110
HIT000358538 (
ENST00000377258
)
genome : 9,910,508 - 9,953,295 (42,788)
query : 1 - 852 (852/852)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000110)
HIX0000110
HIT000358536 (
ENST00000377256
)
genome : 9,910,717 - 9,938,234 (27,518)
query : 1 - 451 (451/451)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000110)
HIX0000110
HIT000094089
(
BC035794
)
genome : 9,940,007 - 9,970,284 (30,278)
query : 5 - 1,063 (1,059/1,077)
2 exons
identity = 0.999
3'(1.000;0.992)5'
coverage = 0.996
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0000110)
AL357140.33
9899364-9979363 F +
NCBI