bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0002762
HIT000433851
(
AK314985
)
(Inducible T-cell costimulator; Activation-inducible lymphocyte immunomediatory molecule; AltName: CD_antigen=CD278; Precursor;)
genome : 204,801,454 - 204,822,618 (21,165)
query : 1 - 682 (682/684)
4 exons
identity = 0.994
5'(1.000;1.000;1.000;0.959)3'
coverage = 0.997
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 23, cyto 5, plas 2, pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002762)
HIX0002762
HIT000203900 (
NM_012092
)
(Inducible T-cell costimulator; Activation-inducible lymphocyte immunomediatory molecule; AltName: CD_antigen=CD278; Precursor;)
genome : 204,801,471 - 204,826,297 (24,827)
query : 1 - 2,642 (2,642/2,652)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 23, cyto 5, plas 2, pero 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002762)
HIX0002762
HIT000120875 (
ENST00000316386
)
(Inducible T-cell costimulator; Activation-inducible lymphocyte immunomediatory molecule; AltName: CD_antigen=CD278; Precursor;)
genome : 204,801,471 - 204,826,300 (24,830)
query : 1 - 2,645 (2,645/2,645)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 23, cyto 5, plas 2, pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002762)
HIX0002762
HIT000246404
(
AJ277832
)
Representative transcript
(Inducible T-cell costimulator; Activation-inducible lymphocyte immunomediatory molecule; AltName: CD_antigen=CD278; Precursor;)
genome : 204,801,471 - 204,826,296 (24,826)
query : 1 - 2,641 (2,641/2,641)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 23, cyto 5, plas 2, pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002762)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK030827
Canis
sp. (Dog) : AY342349
Bos
sp. (Cow) : ENSBTAT00000028775
Monodelphis
sp. (Opossum) : ENSMODT00000039869
Pongo
sp. (Orangutan) : ENSPPYT00000015231
Macaca
sp. (Macaque) : XM_001104581
Pan
sp. (Chimpanzee) : XM_001173460
Equus
sp. (Horse) : XM_001497868
Gallus
sp. (Chicken) : XM_421959
HIX0002762
HIT000040401
(
BC028006
)
(Inducible T-cell costimulator; Activation-inducible lymphocyte immunomediatory molecule; AltName: CD_antigen=CD278; Precursor;)
genome : 204,801,503 - 204,826,297 (24,795)
query : 1 - 2,525 (2,525/2,580)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
pero 22, cyto 5, extr 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002762)
HIX0002762
HIT000040488
(
BC028210
)
(Inducible T-cell costimulator; Activation-inducible lymphocyte immunomediatory molecule; AltName: CD_antigen=CD278; Precursor;)
genome : 204,801,503 - 204,826,297 (24,795)
query : 1 - 2,610 (2,610/2,651)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 23, cyto 5, plas 2, pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002762)
HIX0002762
HIT000533127 (
ENST00000435193
)
(Inducible T-cell costimulator; Activation-inducible lymphocyte immunomediatory molecule; AltName: CD_antigen=CD278; Precursor;)
genome : 204,801,503 - 204,826,300 (24,798)
query : 1 - 2,528 (2,528/2,528)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
pero 22, cyto 5, extr 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002762)
HIX0002762
HIT000058761
(
AB023135
)
(Inducible T-cell costimulator; Activation-inducible lymphocyte immunomediatory molecule; AltName: CD_antigen=CD278; Precursor;)
genome : 204,801,513 - 204,826,297 (24,785)
query : 1 - 2,600 (2,600/2,610)
5 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;0.999)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 23, cyto 5, plas 2, pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002762)
AC103880.4
204793877-204825485 F +
NCBI
AC009965.9
204825486-204833876 F -
NCBI