bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0005064
HIT000202342 (
NM_005668
)
(CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase isoform a.)
genome : 100,142,639 - 100,238,987 (96,349)
query : 1 - 6,320 (6,320/6,330)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.4.99.-
InterPro :
IPR001675 : Glycosyl transferase, family 29
IPR012163 : Sialyltransferase
GO :
0006486 : Biological Process : protein glycosylation
0008373 : Molecular Function : sialyltransferase activity
0030173 : Cellular Component : integral to Golgi membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 20, cyto_nucl 5, nucl 4.5, cyto 4.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005064)
HIX0005064
HIT000104378 (
ENST00000231461
)
(CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase isoform a.)
genome : 100,142,640 - 100,238,987 (96,348)
query : 1 - 6,319 (6,319/6,319)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, nucl 5, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005064)
HIX0005064
HIT000096320
(
BC040671
)
(Hypothetical short protein.)
genome : 100,142,906 - 100,145,817 (2,912)
query : 1 - 2,917 (2,917/2,934)
1 exon
identity = 0.997
3'(0.997)5'
coverage = 0.999
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 17, cyto 10.5, cyto_nucl 7.5, nucl 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005064)
HIX0005064
HIT000053961
(
BC053657
)
Representative transcript
(CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase isoform a.)
genome : 100,145,359 - 100,238,970 (93,612)
query : 1 - 3,586 (3,586/3,680)
5 exons
identity = 0.997
3'(0.996;1.000;1.000;1.000;0.998)5'
coverage = 1.000
InterPro :
IPR001675 : Glycosyl transferase, family 29
IPR012163 : Sialyltransferase
GO :
0006486 : Biological Process : protein glycosylation
0008373 : Molecular Function : sialyltransferase activity
0030173 : Cellular Component : integral to Golgi membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 20, cyto_nucl 5, nucl 4.5, cyto 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005064)
Ortholog candidate ( ->
Evola
)
Gallus
sp. (Chicken) : AF008194
Mus
sp. (Mouse) : AJ223956
Pan
sp. (Chimpanzee) : AJ697661
Bos
sp. (Cow) : AJ699421
Danio
sp. (Zebrafish) : DQ779599
Monodelphis
sp. (Opossum) : ENSMODT00000024487
Pongo
sp. (Orangutan) : ENSPPYT00000018219
Macaca
sp. (Macaque) : XM_001097339
Equus
sp. (Horse) : XM_001504603
Canis
sp. (Dog) : XM_546003
HIX0005064
HIT000193787
(
L41680
)
(CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase isoform a.)
genome : 100,146,949 - 100,238,871 (91,923)
query : 1 - 1,894 (1,894/1,894)
5 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001675 : Glycosyl transferase, family 29
IPR012163 : Sialyltransferase
GO :
0006486 : Biological Process : protein glycosylation
0008373 : Molecular Function : sialyltransferase activity
0030173 : Cellular Component : integral to Golgi membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 20, cyto_nucl 5, nucl 4.5, cyto 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005064)
HIX0005064
HIT000425669
(
AK292872
)
(CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase isoform a.)
genome : 100,147,338 - 100,238,941 (91,604)
query : 1 - 1,575 (1,575/1,575)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001675 : Glycosyl transferase, family 29
IPR012163 : Sialyltransferase
GO :
0006486 : Biological Process : protein glycosylation
0008373 : Molecular Function : sialyltransferase activity
0030173 : Cellular Component : integral to Golgi membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 20, cyto_nucl 5, nucl 4.5, cyto 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005064)
HIX0032313
HIT000081657
(
AK074622
)
Representative transcript
(Hypothetical short protein.)
genome : 100,206,203 - 100,207,726 (1,524)
query : 95 - 1,619 (1,525/1,619)
1 exon
identity = 0.996
3'(0.996)5'
coverage = 0.942
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, cyto_nucl 8.66667, nucl 7, cyto 6,
cyto_plas 4.83333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032313)
HIX0005064
HIT000215231 (
NM_175052
)
(CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase isoform b.)
genome : 100,221,015 - 100,238,970 (17,956)
query : 1 - 1,846 (1,846/1,887)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.4.99.-
InterPro :
IPR001675 : Glycosyl transferase, family 29
GO :
0006486 : Biological Process : protein glycosylation
0008373 : Molecular Function : sialyltransferase activity
0030173 : Cellular Component : integral to Golgi membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14.5, extr 13, mito_pero 8, nucl 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005064)
HIX0005064
HIT000040323
(
BC027866
)
(Similar to CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase; EC=2.4.99.-; Alpha-2,8-sialyltransferase 8D; Polysialyltransferase-1; Sialyltransferase 8D; SIAT8-D; Sialytransferase St8Sia IV; ST8SiaIV;)
genome : 100,221,015 - 100,238,918 (17,904)
query : 1 - 1,794 (1,794/1,835)
3 exons
identity = 0.999
3'(1.000;1.000;0.997)5'
coverage = 1.000
EC number :
EC 2.4.99.-
InterPro :
IPR001675 : Glycosyl transferase, family 29
GO :
0006486 : Biological Process : protein glycosylation
0008373 : Molecular Function : sialyltransferase activity
0030173 : Cellular Component : integral to Golgi membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, mito 13.5, mito_pero 7.5, nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005064)
HIX0005064
HIT000549462 (
ENST00000451528
)
(CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase isoform b.)
genome : 100,221,016 - 100,238,970 (17,955)
query : 1 - 1,845 (1,845/1,845)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.4.99.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, cyto_nucl 12, mito 8, nucl 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005064)
HIX0005064
HIT000607357 (
ENST00000507360
)
(Similar to CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase; EC=2.4.99.-; Alpha-2,8-sialyltransferase 8D; Polysialyltransferase-1; Sialyltransferase 8D; SIAT8-D; Sialytransferase St8Sia IV; ST8SiaIV;)
genome : 100,222,056 - 100,226,586 (4,531)
query : 1 - 559 (559/559)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001675 : Glycosyl transferase, family 29
GO :
0006486 : Biological Process : protein glycosylation
0008373 : Molecular Function : sialyltransferase activity
0030173 : Cellular Component : integral to Golgi membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, cyto_nucl 12.5, nucl 7.5, mito 5, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005064)
HIX0005064
HIT000622662 (
ENST00000523381
)
(Similar to CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase; EC=2.4.99.-; Alpha-2,8-sialyltransferase 8D; Polysialyltransferase-1; Sialyltransferase 8D; SIAT8-D; Sialytransferase St8Sia IV; ST8SiaIV;)
genome : 100,231,366 - 100,238,928 (7,563)
query : 1 - 655 (655/655)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, nucl 6.5, cyto_nucl 6, cyto 4.5, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005064)
HIX0005065
HIT000012099
(
AK055485
)
Representative transcript
(Hypothetical protein.)
genome : 100,239,114 - 100,241,470 (2,357)
query : 1 - 2,356 (2,356/2,356)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 19, mito 5.5, mito_nucl 5.5, nucl 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005065)
AC117530.2
100110813-100191524 F -
NCBI
AC010411.7
100191525-100265360 F +
NCBI
AC008561.5
100265361-100270812 F +
NCBI