bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0165385
HIT000505669 (
ENST00000406616
)
(Non-protein coding transcript.)
genome : 69,308,096 - 69,308,285 (190)
query : 1 - 190 (190/190)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0165385)
HIX0005991
HIT000028152
(
AL833240
)
Representative transcript
(Hypothetical short protein.)
genome : 69,342,556 - 69,344,919 (2,364)
query : 1 - 2,366 (2,366/2,384)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 22, E.R. 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005991)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK048705
Rattus
sp. (Rat) : ENSRNOT00000001381
HIX0078328
HIT000328452
(
AB073651
)
Representative transcript
(Hypothetical protein.)
genome : 69,342,555 - 69,344,758 (2,204)
query : 4 - 2,207 (2,204/2,207)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, nucl 3.5, cyto_nucl 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0078328)
HIX0005991
HIT000517913 (
ENST00000419979
)
(Hypothetical short protein.)
genome : 69,342,555 - 69,344,216 (1,662)
query : 1 - 534 (534/534)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005991)
HIX0019135
HIT000351878 (
ENST00000370598
)
(Brain-specific angiogenesis inhibitor 3; Precursor;)
genome : 69,345,259 - 70,099,403 (754,145)
query : 1 - 6,010 (6,010/6,010)
32 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 26, E.R. 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019135)
HIX0019135
HIT000198642 (
NM_001704
)
(Brain-specific angiogenesis inhibitor 3; Precursor;)
genome : 69,345,632 - 70,099,403 (753,772)
query : 1 - 5,637 (5,637/5,650)
32 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.994;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 26, E.R. 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019135)
HIX0019135
HIT000000267
(
AB011122
)
Representative transcript
(Brain-specific angiogenesis inhibitor 3; Precursor;)
genome : 69,345,843 - 70,099,397 (753,555)
query : 1 - 5,420 (5,420/5,420)
32 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.994;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.998;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 26, E.R. 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019135)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : BC099951
Oryzias
sp. (Medaka) : ENSORLT00000012888
Pongo
sp. (Orangutan) : ENSPPYT00000019488
Takifugu
sp. (Fugu) : SINFRUT00000129349
Rattus
sp. (Rat) : XM_001069326
Monodelphis
sp. (Opossum) : XM_001365288
Equus
sp. (Horse) : XM_001503385
Canis
sp. (Dog) : XM_861971
Macaca
sp. (Macaque) : XR_013935
Pan
sp. (Chimpanzee) : XR_022732
HIX0019135
HIT000422493
(
AK289696
)
(Brain-specific angiogenesis inhibitor 3; Precursor;)
genome : 69,345,859 - 70,098,839 (752,981)
query : 1 - 4,674 (4,674/4,674)
31 exons
identity = 0.999
5'(1.000;1.000;0.991;1.000;1.000;1.000;0.994;
1.000;1.000;0.995;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.990;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.998;
1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000203 : GPS motif
IPR000832 : GPCR, family 2, secretin-like
IPR000859 : CUB domain
IPR000884 : Thrombospondin, type 1 repeat
IPR001879 : GPCR, family 2, extracellular hormone receptor domain
IPR008077 : GPCR, family 2, brain-specific angiogenesis inhibitor
IPR017981 : GPCR, family 2-like
IPR017983 : GPCR, family 2, secretin-like, conserved site
IPR022624 : Domain of unknown function DUF3497
GO :
0004888 : Molecular Function : transmembrane signaling receptor activity
0004930 : Molecular Function : G-protein coupled receptor activity
0007166 : Biological Process : cell surface receptor signaling pathway
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0007218 : Biological Process : neuropeptide signaling pathway
0016020 : Cellular Component : membrane
0016021 : Cellular Component : integral component of membrane
0016525 : Biological Process : negative regulation of angiogenesis
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 26, E.R. 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019135)
HIX0019135
HIT000058055
(
AB005299
)
(Brain-specific angiogenesis inhibitor 3; Precursor;)
genome : 69,348,551 - 70,099,399 (750,849)
query : 17 - 5,218 (5,202/5,218)
30 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;0.994;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.998;1.000;
1.000;1.000)3'
coverage = 0.997
InterPro :
IPR000203 : GPS motif
IPR000832 : GPCR, family 2, secretin-like
IPR000859 : CUB domain
IPR000884 : Thrombospondin, type 1 repeat
IPR001879 : GPCR, family 2, extracellular hormone receptor domain
IPR008077 : GPCR, family 2, brain-specific angiogenesis inhibitor
IPR017981 : GPCR, family 2-like
IPR017983 : GPCR, family 2, secretin-like, conserved site
IPR022624 : Domain of unknown function DUF3497
GO :
0004888 : Molecular Function : transmembrane signaling receptor activity
0004930 : Molecular Function : G-protein coupled receptor activity
0007166 : Biological Process : cell surface receptor signaling pathway
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0007218 : Biological Process : neuropeptide signaling pathway
0016020 : Cellular Component : membrane
0016021 : Cellular Component : integral component of membrane
0016525 : Biological Process : negative regulation of angiogenesis
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 26, E.R. 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019135)
HIX0019135
HIT000339992
(
BC111720
)
(Brain-specific angiogenesis inhibitor 3; Precursor;)
genome : 69,348,551 - 70,099,020 (750,470)
query : 11 - 4,833 (4,823/4,833)
30 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;0.994;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 0.998
InterPro :
IPR000203 : GPS motif
IPR000832 : GPCR, family 2, secretin-like
IPR000859 : CUB domain
IPR000884 : Thrombospondin, type 1 repeat
IPR001879 : GPCR, family 2, extracellular hormone receptor domain
IPR008077 : GPCR, family 2, brain-specific angiogenesis inhibitor
IPR017981 : GPCR, family 2-like
IPR017983 : GPCR, family 2, secretin-like, conserved site
IPR022624 : Domain of unknown function DUF3497
GO :
0004888 : Molecular Function : transmembrane signaling receptor activity
0004930 : Molecular Function : G-protein coupled receptor activity
0007166 : Biological Process : cell surface receptor signaling pathway
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0007218 : Biological Process : neuropeptide signaling pathway
0016020 : Cellular Component : membrane
0016021 : Cellular Component : integral component of membrane
0016525 : Biological Process : negative regulation of angiogenesis
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 26, E.R. 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019135)
HIX0057821
HIT000328479
(
AB073892
)
Representative transcript
(Conserved hypothetical protein.)
genome : 69,436,206 - 69,438,295 (2,090)
query : 1 - 2,089 (2,089/2,089)
1 exon
identity = 0.997
5'(0.997)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 18, cyto 5.5, cyto_nucl 4.5, mito 4, nucl 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057821)
HIX0019551
HIT000007394
(
AK024120
)
Representative transcript
(Conserved hypothetical protein.)
genome : 69,566,604 - 69,571,445 (4,842)
query : 151 - 2,189 (2,039/2,197)
2 exons
identity = 0.982
5'(0.999;0.642)3'
coverage = 0.928
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto 9, extr_plas 9, cyto_nucl 8.33333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019551)
HIX0005992
HIT000097356
(
BC042821
)
Representative transcript
(Conserved hypothetical protein.)
genome : 69,815,073 - 69,816,057 (985)
query : 1 - 985 (985/1,024)
1 exon
identity = 0.996
5'(0.996)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005992)
HIX0019135
HIT000104902 (
ENST00000238918
)
(Brain-specific angiogenesis inhibitor 3; Precursor;)
genome : 69,942,298 - 70,099,397 (157,100)
query : 1 - 2,927 (2,927/2,927)
16 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019135)
HIX0019135
HIT000490140
(
AK295516
)
(Brain-specific angiogenesis inhibitor 3; Precursor;)
genome : 69,942,298 - 70,099,397 (157,100)
query : 1 - 2,927 (2,927/2,927)
16 exons
identity = 0.999
5'(0.996;1.000;1.000;1.000;0.993;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000203 : GPS motif
IPR000832 : GPCR, family 2, secretin-like
IPR008077 : GPCR, family 2, brain-specific angiogenesis inhibitor
IPR017981 : GPCR, family 2-like
IPR017983 : GPCR, family 2, secretin-like, conserved site
GO :
0004888 : Molecular Function : transmembrane signaling receptor activity
0004930 : Molecular Function : G-protein coupled receptor activity
0007166 : Biological Process : cell surface receptor signaling pathway
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0007218 : Biological Process : neuropeptide signaling pathway
0016020 : Cellular Component : membrane
0016021 : Cellular Component : integral component of membrane
0016525 : Biological Process : negative regulation of angiogenesis
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019135)
HIX0019135
HIT000499787
(
AK316174
)
(Brain-specific angiogenesis inhibitor 3; Precursor;)
genome : 69,942,386 - 70,098,979 (156,594)
query : 1 - 2,421 (2,421/2,421)
16 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;0.993;1.000;1.000;
1.000;1.000;0.994;1.000;1.000;0.998;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000203 : GPS motif
IPR000832 : GPCR, family 2, secretin-like
IPR008077 : GPCR, family 2, brain-specific angiogenesis inhibitor
IPR017981 : GPCR, family 2-like
IPR017983 : GPCR, family 2, secretin-like, conserved site
GO :
0004888 : Molecular Function : transmembrane signaling receptor activity
0004930 : Molecular Function : G-protein coupled receptor activity
0007166 : Biological Process : cell surface receptor signaling pathway
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0007218 : Biological Process : neuropeptide signaling pathway
0016020 : Cellular Component : membrane
0016021 : Cellular Component : integral component of membrane
0016525 : Biological Process : negative regulation of angiogenesis
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019135)
HIX0019135
HIT000488184
(
AK293560
)
(Brain-specific angiogenesis inhibitor 3; Precursor;)
genome : 70,041,760 - 70,099,109 (57,350)
query : 1 - 1,882 (1,882/1,882)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000832 : GPCR, family 2, secretin-like
IPR008077 : GPCR, family 2, brain-specific angiogenesis inhibitor
IPR017983 : GPCR, family 2, secretin-like, conserved site
GO :
0004930 : Molecular Function : G-protein coupled receptor activity
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0016020 : Cellular Component : membrane
0016021 : Cellular Component : integral component of membrane
0016525 : Biological Process : negative regulation of angiogenesis
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 18.5, pero 11, extr_plas 10
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019135)
HIX0019135
HIT000645235 (
ENST00000546190
)
(Brain-specific angiogenesis inhibitor 3; Precursor;)
genome : 70,041,760 - 70,099,109 (57,350)
query : 1 - 1,882 (1,882/1,882)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 18.5, pero 11, extr_plas 10
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019135)
HIX0005993
HIT000207180 (
NM_018368
)
(Probable lysosomal cobalamin transporter; HDAg-L-interacting protein NESI; LMBR1 domain-containing protein 1; Nuclear export signal-interacting protein;)
genome : 70,385,641 - 70,507,049 (121,409)
query : 1 - 2,308 (2,308/2,308)
16 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005993)
HIX0005993
HIT000069777
(
AF113224
)
(Probable lysosomal cobalamin transporter; HDAg-L-interacting protein NESI; LMBR1 domain-containing protein 1; Nuclear export signal-interacting protein;)
genome : 70,385,694 - 70,506,769 (121,076)
query : 1 - 1,975 (1,975/2,012)
16 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
InterPro :
IPR006876 : LMBR1-like membrane protein
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005993)
HIX0005993
HIT000056384
(
BX647737
)
(Probable lysosomal cobalamin transporter; HDAg-L-interacting protein NESI; LMBR1 domain-containing protein 1; Nuclear export signal-interacting protein;)
genome : 70,385,699 - 70,490,902 (105,204)
query : 2 - 1,842 (1,841/1,861)
15 exons
identity = 0.997
3'(0.998;1.000;0.975;1.000;0.990;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.991)5'
coverage = 0.998
InterPro :
IPR006876 : LMBR1-like membrane protein
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005993)
HIX0005993
HIT000002259
(
AF208863
)
(Probable lysosomal cobalamin transporter; HDAg-L-interacting protein NESI; LMBR1 domain-containing protein 1; Nuclear export signal-interacting protein;)
genome : 70,385,698 - 70,500,557 (114,860)
query : 1 - 2,099 (2,099/2,113)
15 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.989)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005993)
HIX0005993
HIT000002262
(
AF211480
)
(Probable lysosomal cobalamin transporter; HDAg-L-interacting protein NESI; LMBR1 domain-containing protein 1; Nuclear export signal-interacting protein;)
genome : 70,385,699 - 70,459,298 (73,600)
query : 22 - 1,588 (1,567/1,602)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.986
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005993)
HIX0005993
HIT000351857 (
ENST00000370577
)
(Probable lysosomal cobalamin transporter; HDAg-L-interacting protein NESI; LMBR1 domain-containing protein 1; Nuclear export signal-interacting protein;)
genome : 70,385,694 - 70,507,003 (121,310)
query : 1 - 2,209 (2,209/2,209)
16 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005993)
HIX0005993
HIT000351850 (
ENST00000370570
)
(Probable lysosomal cobalamin transporter; HDAg-L-interacting protein NESI; LMBR1 domain-containing protein 1; Nuclear export signal-interacting protein;)
genome : 70,385,698 - 70,500,557 (114,860)
query : 1 - 2,099 (2,099/2,099)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005993)
HIX0005993
HIT000331694
(
AY136817
)
(Probable lysosomal cobalamin transporter; HDAg-L-interacting protein NESI; LMBR1 domain-containing protein 1; Nuclear export signal-interacting protein;)
genome : 70,385,698 - 70,500,214 (114,517)
query : 1 - 1,756 (1,756/1,756)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR006876 : LMBR1-like membrane protein
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005993)
HIX0005993
HIT000053081
(
BC047073
)
Representative transcript
(Probable lysosomal cobalamin transporter; HDAg-L-interacting protein NESI; LMBR1 domain-containing protein 1; Nuclear export signal-interacting protein;)
genome : 70,385,750 - 70,506,888 (121,139)
query : 1 - 2,038 (2,038/2,076)
16 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;0.990;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
InterPro :
IPR006876 : LMBR1-like membrane protein
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005993)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB169601
Gallus
sp. (Chicken) : AJ720979
Mus
sp. (Mouse) : AK032560
Rattus
sp. (Rat) : BC078723
Bos
sp. (Cow) : BC103324
Danio
sp. (Zebrafish) : ENSDART00000074131
Oryzias
sp. (Medaka) : ENSORLT00000012912
Pongo
sp. (Orangutan) : ENSPPYT00000019490
Tetraodon
sp. (Tetraodon) : GSTENT00030706001
Takifugu
sp. (Fugu) : SINFRUT00000129345
Pan
sp. (Chimpanzee) : XM_001136075
Monodelphis
sp. (Opossum) : XM_001372997
Equus
sp. (Horse) : XM_001503388
Canis
sp. (Dog) : XM_848140
HIX0005993
HIT000034897
(
BC010360
)
(Probable lysosomal cobalamin transporter; HDAg-L-interacting protein NESI; LMBR1 domain-containing protein 1; Nuclear export signal-interacting protein;)
genome : 70,385,752 - 70,506,777 (121,026)
query : 5 - 1,696 (1,692/1,727)
14 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.996
InterPro :
IPR006876 : LMBR1-like membrane protein
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 17, E.R. 11, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005993)
HIX0005993
HIT000577186 (
ENST00000472827
)
(Probable lysosomal cobalamin transporter; HDAg-L-interacting protein NESI; LMBR1 domain-containing protein 1; Nuclear export signal-interacting protein;)
genome : 70,385,749 - 70,506,777 (121,029)
query : 1 - 1,861 (1,861/1,861)
16 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005993)
HIX0005993
HIT000004576
(
AK002102
)
(Probable lysosomal cobalamin transporter; HDAg-L-interacting protein NESI; LMBR1 domain-containing protein 1; Nuclear export signal-interacting protein;)
genome : 70,385,751 - 70,506,798 (121,048)
query : 1 - 1,947 (1,947/1,947)
16 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005993)
HIX0005993
HIT000422866
(
AK290069
)
(Probable lysosomal cobalamin transporter; HDAg-L-interacting protein NESI; LMBR1 domain-containing protein 1; Nuclear export signal-interacting protein;)
genome : 70,385,756 - 70,506,534 (120,779)
query : 1 - 2,073 (2,073/2,073)
16 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.993;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.996)5'
coverage = 1.000
InterPro :
IPR006876 : LMBR1-like membrane protein
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 23, E.R. 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005993)
HIX0005993
HIT000384667
(
AK225537
)
(Probable lysosomal cobalamin transporter; HDAg-L-interacting protein NESI; LMBR1 domain-containing protein 1; Nuclear export signal-interacting protein;)
genome : 70,385,791 - 70,506,783 (120,993)
query : 1 - 1,892 (1,892/1,892)
16 exons
identity = 0.999
3'(1.000;1.000;0.987;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
InterPro :
IPR006876 : LMBR1-like membrane protein
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005993)
HIX0005993
HIT000384317
(
AK225187
)
(Probable lysosomal cobalamin transporter; HDAg-L-interacting protein NESI; LMBR1 domain-containing protein 1; Nuclear export signal-interacting protein;)
genome : 70,385,812 - 70,506,798 (120,987)
query : 1 - 1,886 (1,886/1,886)
16 exons
identity = 0.999
3'(1.000;1.000;0.987;1.000;1.000;1.000;1.000;
0.993;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
InterPro :
IPR006876 : LMBR1-like membrane protein
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005993)
HIX0005994
HIT000005190
(
AK021916
)
Representative transcript
(Conserved hypothetical protein.)
genome : 70,398,309 - 70,400,779 (2,471)
query : 1 - 2,471 (2,471/2,471)
1 exon
identity = 0.997
3'(0.997)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 14.5, cyto 14, extr_plas 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005994)
HIX0201007
HIT000504370 (
ENST00000403105
)
(Conserved hypothetical protein.)
genome : 70,415,179 - 70,416,052 (874)
query : 1 - 874 (874/874)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto 10, mito_nucl 10
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201007)
HIX0165400
HIT000505749 (
ENST00000406848
)
(Glyceraldehyde/Erythrose phosphate dehydrogenase family protein.)
genome : 70,455,763 - 70,456,743 (981)
query : 1 - 981 (981/981)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, mito 14, cyto_nucl 9.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0165400)
HIX0005993
HIT000328537
(
AB074281
)
(Conserved hypothetical protein.)
genome : 70,503,629 - 70,506,479 (2,851)
query : 2 - 2,852 (2,851/2,852)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto_nucl 11, cyto 10, nucl 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005993)
HIX0216864
HIT000264135
(
BC070177
)
Representative transcript
(Collagen alpha-1(XIX) chain; Collagen alpha-1(Y) chain; Precursor;)
genome : 70,576,463 - 70,601,093 (24,631)
query : 1 - 1,477 (1,477/1,506)
3 exons
identity = 0.999
5'(1.000;1.000;0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, mito 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0216864)
HIX0216864
HIT000427889
(
AK309023
)
(Collagen alpha-1(XIX) chain; Collagen alpha-1(Y) chain; Precursor;)
genome : 70,577,308 - 70,590,100 (12,793)
query : 1 - 895 (895/895)
2 exons
identity = 0.999
5'(0.995;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, mito 5, cyto_nucl 2, nucl 1.5, cyto 1.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0216864)
HIX0216864
HIT000580841 (
ENST00000476656
)
(Conserved hypothetical protein.)
genome : 70,577,441 - 70,601,096 (23,656)
query : 1 - 1,499 (1,499/1,515)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0216864)
HIX0216864
HIT000582717 (
ENST00000478620
)
(Hypothetical short protein.)
genome : 70,577,441 - 70,589,687 (12,247)
query : 1 - 349 (349/349)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, mito 5, cyto_nucl 2, nucl 1.5, cyto 1.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0216864)
HIX0217072
HIT000587619 (
ENST00000483745
)
(Collagen triple helix repeat containing protein.)
genome : 70,646,764 - 70,684,088 (37,325)
query : 1 - 550 (550/550)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, cyto 4, mito 4, cyto_mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0217072)
HIX0216852
HIT000476800 (
ENST00000393344
)
(Collagen triple helix repeat containing protein.)
genome : 70,769,627 - 70,919,679 (150,053)
query : 1 - 5,023 (5,023/5,023)
38 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, nucl 6, mito 6, mito_nucl 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0216852)
HIX0032939
HIT000198789 (
NM_001858
)
(Collagen alpha-1(XIX) chain; Collagen alpha-1(Y) chain; Precursor;)
genome : 70,576,448 - 70,922,157 (345,710)
query : 1 - 8,725 (8,725/8,725)
51 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24, pero 4, E.R. 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032939)
HIX0032939
HIT000101421
(
D38163
)
(Collagen alpha-1(XIX) chain; Collagen alpha-1(Y) chain; Precursor;)
genome : 70,576,448 - 70,917,153 (340,706)
query : 1 - 3,720 (3,720/3,720)
51 exons
identity = 0.995
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.992;1.000;1.000;1.000;1.000;0.981;1.000;
1.000)3'
coverage = 1.000
InterPro :
IPR001791 : Laminin G domain
IPR008160 : Collagen triple helix repeat
IPR013320 : Concanavalin A-like lectin/glucanase domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24, pero 4, E.R. 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032939)
HIX0032939
HIT000429487
(
AK310621
)
(Collagen alpha-1(III) chain; Precursor;)
genome : 70,576,458 - 70,749,616 (173,159)
query : 1 - 1,632 (1,632/1,632)
15 exons
identity = 0.999
5'(1.000;0.992;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
InterPro :
IPR001791 : Laminin G domain
IPR008160 : Collagen triple helix repeat
IPR013320 : Concanavalin A-like lectin/glucanase domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 19.5, cyto_mito 11, extr 5, pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032939)
HIX0032939
HIT000123267 (
ENST00000322773
)
(Collagen alpha-1(XIX) chain; Collagen alpha-1(Y) chain; Precursor;)
genome : 70,576,463 - 70,919,679 (343,217)
query : 1 - 6,232 (6,232/6,232)
51 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24, pero 4, E.R. 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032939)
HIX0032939
HIT000386817
(
BC113364
)
Representative transcript
(Collagen alpha-1(XIX) chain; Collagen alpha-1(Y) chain; Precursor;)
genome : 70,576,480 - 70,917,033 (340,554)
query : 1 - 3,569 (3,569/3,569)
51 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
InterPro :
IPR001791 : Laminin G domain
IPR008160 : Collagen triple helix repeat
IPR013320 : Concanavalin A-like lectin/glucanase domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24, pero 4, E.R. 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032939)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AB000636
Bos
sp. (Cow) : ENSBTAT00000027953
Oryzias
sp. (Medaka) : ENSORLT00000012972
Pongo
sp. (Orangutan) : ENSPPYT00000019491
Tetraodon
sp. (Tetraodon) : GSTENT00006108001
Tetraodon
sp. (Tetraodon) : GSTENT00030711001
Takifugu
sp. (Fugu) : SINFRUT00000129338
Rattus
sp. (Rat) : XM_001072067
Macaca
sp. (Macaque) : XM_001108025
Pan
sp. (Chimpanzee) : XM_001135236
Monodelphis
sp. (Opossum) : XM_001373032
Equus
sp. (Horse) : XM_001500536
Canis
sp. (Dog) : XM_538993
HIX0032939
HIT000386815
(
BC113362
)
(Collagen alpha-1(XIX) chain; Collagen alpha-1(Y) chain; Precursor;)
genome : 70,576,480 - 70,917,026 (340,547)
query : 1 - 3,562 (3,562/3,562)
51 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
InterPro :
IPR001791 : Laminin G domain
IPR008160 : Collagen triple helix repeat
IPR013320 : Concanavalin A-like lectin/glucanase domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24, pero 4, E.R. 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032939)
HIX0032939
HIT000196077
(
M63597
)
(Collagen alpha-1(IV) chain; Contains: Arresten; Precursor;)
genome : 70,608,838 - 70,856,762 (247,925)
query : 16 - 1,798 (1,783/1,798)
25 exons
identity = 0.996
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.964;0.981;1.000;1.000)3'
coverage = 0.992
InterPro :
IPR001791 : Laminin G domain
IPR008160 : Collagen triple helix repeat
IPR013320 : Concanavalin A-like lectin/glucanase domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21.5, cyto_nucl 13, mito 4, nucl 3.5,
mito_pero 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032939)
HIX0032939
HIT000192169
(
L12347
)
(Collagen alpha-1(IV) chain; Contains: Arresten; Precursor;)
genome : 70,637,892 - 70,875,904 (238,013)
query : 43 - 2,157 (2,115/2,157)
33 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 0.981
InterPro :
IPR001791 : Laminin G domain
IPR008160 : Collagen triple helix repeat
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13, cyto 11.5, cyto_pero 7, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032939)
AL606923.8
69200001-69310839 F +
NCBI
AL391807.13
69310840-69382067 F +
NCBI
AL035469.7
69382068-69540171 F +
NCBI
AL078598.4
69540172-69595591 F +
NCBI
AL589875.4
69595592-69598351 F +
NCBI
AL356117.16
69598352-69725330 F +
NCBI
AL359714.18
69725331-69881359 F +
NCBI
AL158051.10
69881360-69950781 F +
NCBI
AL133378.16
69950782-70064507 F +
NCBI
AL160401.12
70064508-70186013 F +
NCBI
AL135780.11
70186014-70302791 F +
NCBI
AL358133.11
70302792-70394550 F +
NCBI
AL583831.6
70394551-70411695 F +
NCBI
AL590702.17
70411696-70525282 F +
NCBI
AL359539.11
70525283-70638506 F +
NCBI
AL118519.25
70638507-70757286 F -
NCBI
AL133388.7
70757287-70800000 F +
NCBI