bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0033900
HIT000619699 (
ENST00000520360
)
(Conserved hypothetical protein.)
genome : 27,224,137 - 27,228,786 (4,650)
query : 1 - 1,289 (1,289/1,289)
3 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, cyto_nucl 15, cyto 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0033900)
HIX0033900
HIT000622148 (
ENST00000522863
)
(Conserved hypothetical protein.)
genome : 27,224,290 - 27,228,786 (4,497)
query : 1 - 1,723 (1,723/1,723)
5 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, cyto_nucl 15, cyto 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0033900)
HIX0033900
HIT000091045
(
BC025338
)
Representative transcript
(Conserved hypothetical protein.)
genome : 27,225,027 - 27,228,912 (3,886)
query : 1 - 1,548 (1,548/1,627)
2 exons
identity = 0.999
5'(0.999)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto_nucl 15, cyto 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0033900)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : U20366
Pan
sp. (Chimpanzee) : XM_001163023
HIX0033900
HIT000367140 (
NR_002795
)
(Conserved hypothetical protein.)
genome : 27,225,027 - 27,228,912 (3,886)
query : 1 - 1,549 (1,549/1,628)
2 exons
identity = 1.000
5'(1.000)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto_nucl 15, cyto 7
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0033900)
HIX0033900
HIT000621965 (
ENST00000522674
)
(Conserved hypothetical protein.)
genome : 27,225,027 - 27,228,912 (3,886)
query : 1 - 1,549 (1,549/1,549)
2 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto_nucl 15, cyto 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0033900)
HIX0208114
HIT000622612 (
ENST00000523331
)
(Hypothetical short protein.)
genome : 27,226,192 - 27,233,067 (6,876)
query : 1 - 556 (556/556)
2 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0208114)
HIX0033900
HIT000583812 (
ENST00000479766
)
(Conserved hypothetical protein.)
genome : 27,227,438 - 27,228,839 (1,402)
query : 1 - 822 (822/822)
2 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 22, extr 5, nucl 2, cyto 2, cyto_nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0033900)
HIX0201189
HIT000617522 (
ENST00000518136
)
(Hypothetical short protein.)
genome : 27,233,122 - 27,235,219 (2,098)
query : 1 - 871 (871/871)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15, cyto 13, nucl 11, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201189)
HIX0201189
HIT000103716 (
ENST00000222753
)
(Homeobox protein Hox-A13; Homeobox protein Hox-1J;)
genome : 27,234,637 - 27,239,725 (5,089)
query : 1 - 4,376 (4,376/4,376)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201189)
HIX0201189
HIT000098379
(
BC046515
)
(Non-protein coding transcript.)
genome : 27,235,818 - 27,235,994 (177)
query : 1 - 177 (177/227)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201189)
HIX0201189
HIT000089036
(
BC016712
)
(Homeobox protein Hox-A13; Fragment;)
genome : 27,236,499 - 27,237,972 (1,474)
query : 3 - 1,475 (1,473/1,506)
1 exon
identity = 0.998
3'(0.998)5'
coverage = 0.997
InterPro :
IPR017970 : Homeobox, conserved site
IPR020479 : Homeodomain, metazoa
GO :
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
0043565 : Molecular Function : sequence-specific DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201189)
HIX0201189
HIT000197557 (
NM_000522
)
(Homeobox protein Hox-A13; Homeobox protein Hox-1J;)
genome : 27,236,499 - 27,239,725 (3,227)
query : 1 - 2,514 (2,514/2,514)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201189)
HIX0201189
HIT000265606
(
BC075791
)
Representative transcript
(Homeobox protein Hox-A13; Homeobox protein Hox-1J;)
genome : 27,236,577 - 27,239,725 (3,149)
query : 1 - 2,436 (2,436/2,453)
2 exons
identity = 0.999
3'(0.999;0.999)5'
coverage = 0.999
InterPro :
IPR017970 : Homeobox, conserved site
IPR022067 : Homeobox protein Hox1A3 N-terminal
GO :
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
0043565 : Molecular Function : sequence-specific DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201189)
Ortholog candidate ( ->
Evola
)
Danio
sp. (Zebrafish) : BC090761
Mus
sp. (Mouse) : BC100732
Bos
sp. (Cow) : ENSBTAT00000019609
Canis
sp. (Dog) : ENSCAFT00000004756
Gallus
sp. (Chicken) : ENSGALT00000037816
Oryzias
sp. (Medaka) : ENSORLT00000006356
Pongo
sp. (Orangutan) : ENSPPYT00000020620
Rattus
sp. (Rat) : ENSRNOT00000010441
Tetraodon
sp. (Tetraodon) : GSTENT00020457001
Takifugu
sp. (Fugu) : SINFRUT00000179640
Monodelphis
sp. (Opossum) : XM_001362439
Pan
sp. (Chimpanzee) : XM_527701
HIX0201147
HIT000519667 (
ENST00000421733
)
(Conserved hypothetical protein.)
genome : 27,238,194 - 27,240,855 (2,662)
query : 1 - 781 (781/781)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 10, cyto_nucl 9, cyto_mito 8.5, cyto 7.5,
mito 7.5, nucl 6, cyto_pero 5.66667
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201147)
HIX0201147
HIT000620350 (
ENST00000521028
)
(Conserved hypothetical protein.)
genome : 27,240,040 - 27,246,878 (6,839)
query : 1 - 4,511 (4,511/4,511)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, cyto_nucl 13.5, extr 8, cyto 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201147)
HIX0201147
HIT000660006 (
NR_037843
)
(Conserved hypothetical protein.)
genome : 27,240,040 - 27,246,129 (6,090)
query : 1 - 3,762 (3,762/3,772)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, cyto_nucl 13.5, extr 8, cyto 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201147)
HIX0201147
HIT000018844
(
AK093987
)
Representative transcript
(Conserved hypothetical protein.)
genome : 27,240,056 - 27,242,441 (2,386)
query : 1 - 2,283 (2,283/2,283)
2 exons
identity = 0.998
5'(1.000;0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, extr 12, cyto_nucl 10, cyto 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201147)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : XM_001092503
HIX0201147
HIT000576865 (
ENST00000472494
)
(Conserved hypothetical protein.)
genome : 27,240,056 - 27,242,441 (2,386)
query : 1 - 2,285 (2,285/2,285)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, extr 12, cyto_nucl 10, cyto 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201147)
AC004080.2
27228423-27244422 F +
NCBI
C-rich
AT_rich
(TTTTTG)n
(TA)n
GC_rich
GC_rich
(CGG)n
(CCG)n
GC_rich
GC_rich
(A)n