bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0029332
HIT000097074
(
BC042042
)
Representative transcript
(Conserved hypothetical protein.)
genome : 190,594,020 - 190,770,788 (176,769)
query : 17 - 2,226 (2,210/2,242)
5 exons
identity = 0.996
5'(1.000;1.000;1.000;1.000;0.995)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, cyto_nucl 4, nucl 3.5, cyto 3.5, lyso 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0029332)
HIX0029332
HIT000659079 (
NR_033922
)
(Conserved hypothetical protein.)
genome : 190,594,020 - 190,770,788 (176,769)
query : 1 - 2,216 (2,216/2,232)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, cyto 7.5, cyto_plas 4.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0029332)
HIX0029332
HIT000511290 (
ENST00000413356
)
(Conserved hypothetical protein.)
genome : 190,594,020 - 190,770,788 (176,769)
query : 1 - 2,216 (2,216/2,216)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, cyto 7.5, cyto_plas 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0029332)
HIX0160244
HIT000510609 (
ENST00000412675
)
(Non-protein coding transcript.)
genome : 190,750,917 - 190,751,125 (209)
query : 1 - 209 (209/209)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0160244)
HIX0161194
HIT000542974 (
ENST00000445040
)
(Glycine cleavage system H-protein family protein.)
genome : 190,766,654 - 190,767,086 (433)
query : 1 - 433 (433/433)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, cyto 5.5, cyto_nucl 4.5, nucl 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0161194)
HIX0160220
HIT000509669 (
ENST00000411735
)
(RNA recognition motif domain containing protein.)
genome : 191,115,155 - 191,116,091 (937)
query : 1 - 937 (937/937)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 17.5, nucl 14, cyto 13, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0160220)
HIX0029371
HIT000099134
(
BC050290
)
Representative transcript
(Conserved hypothetical protein.)
genome : 191,120,640 - 191,123,764 (3,125)
query : 1 - 3,129 (3,129/3,145)
1 exon
identity = 0.996
5'(0.996)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24, cyto 4, extr 2, nucl 2, cyto_pero 2,
cyto_plas 2, cyto_golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0029371)
HIX0029371
HIT000676480 (
ENST00000563320
)
(Conserved hypothetical protein.)
genome : 191,120,640 - 191,123,764 (3,125)
query : 1 - 3,125 (3,125/3,125)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24, cyto 4, extr 2, nucl 2, cyto_pero 2,
cyto_plas 2, cyto_golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0029371)
HIX0160886
HIT000532917 (
ENST00000434983
)
(Hypothetical short protein.)
genome : 191,190,289 - 191,197,597 (7,309)
query : 1 - 299 (299/299)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 27, nucl 2, cyto 2, cyto_nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0160886)
HIX0159873
HIT000530017 (
ENST00000432083
)
(Hypothetical short protein.)
genome : 191,827,837 - 191,836,090 (8,254)
query : 1 - 615 (615/615)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 10.5, cyto_nucl 10, extr 7, mito 5, nucl 4.5,
golg 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159873)
HIX0159873
HIT000526503 (
ENST00000428569
)
(Hypothetical short protein.)
genome : 191,827,893 - 191,859,359 (31,467)
query : 1 - 583 (583/583)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto 9.5, cyto_nucl 7, nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159873)
HIX0029336
HIT000097121
(
BC042094
)
Representative transcript
(Conserved hypothetical protein.)
genome : 191,844,625 - 191,980,390 (135,766)
query : 1 - 2,051 (2,051/2,139)
6 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;0.997)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, cyto_nucl 12.3333, cyto_pero 8.33333, mito 7,
extr 6, nucl 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0029336)
HIX0029336
HIT000528710 (
ENST00000430776
)
(Hypothetical short protein.)
genome : 191,844,625 - 191,980,390 (135,766)
query : 1 - 2,035 (2,035/2,035)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 12, E.R. 4.5, E.R._mito 4.33333, extr 4, nucl 4,
plas 3, mito 3, mito_pero 2.83333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0029336)
AL158838.12
190500001-190624099 F +
NCBI
AL354725.10
190624100-190628093 F +
NCBI
AL139135.15
190628094-190792012 F +
NCBI
AL391098.17
190792013-190898167 F +
NCBI
AL138927.14
190898168-191061234 F +
NCBI
AL749526.1
191061235-191063228 F +
NCBI
AL713866.4
191063229-191203618 F +
NCBI
AL354929.8
191203619-191302119 F +
NCBI
AL136375.6
191302120-191357748 F +
NCBI
AL359835.10
191357749-191530395 F +
NCBI
AL391258.10
191530396-191578831 F +
NCBI
AL356288.15
191578832-191761300 F +
NCBI
AL359081.10
191761301-191870488 F +
NCBI
AL359376.22
191870489-191915463 F +
NCBI
AL954650.8
191915464-191999720 F +
NCBI
AL596342.3
191999721-192100000 F +
NCBI