bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0001475
HIT000210390 (
NM_032103
)
(Conserved hypothetical protein.)
genome : 202,431,871 - 202,557,697 (125,827)
query : 1 - 9,463 (9,463/9,463)
11 exons
identity = 0.999
5'(0.993;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.53
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23, cyto 8
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001475)
HIX0001475
HIT000210391 (
NM_032104
)
(Conserved hypothetical protein.)
genome : 202,431,871 - 202,557,697 (125,827)
query : 1 - 9,644 (9,644/9,644)
12 exons
identity = 0.998
5'(0.993;1.000;1.000;1.000;0.984;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.53
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23, cyto 8
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001475)
HIX0001475
HIT000348550 (
ENST00000367270
)
(Conserved hypothetical protein.)
genome : 202,431,871 - 202,557,697 (125,827)
query : 1 - 9,644 (9,644/9,644)
12 exons
identity = 0.998
5'(0.993;1.000;1.000;1.000;0.984;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23, cyto 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001475)
HIX0001475
HIT000475454 (
ENST00000391959
)
(Conserved hypothetical protein.)
genome : 202,431,871 - 202,557,697 (125,827)
query : 1 - 9,463 (9,463/9,463)
11 exons
identity = 0.999
5'(0.993;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23, cyto 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001475)
HIX0001475
HIT000059563
(
AB050641
)
(Protein phosphatase 1 regulatory subunit 12B isoform c.)
genome : 202,431,871 - 202,550,280 (118,410)
query : 1 - 2,046 (2,046/2,046)
11 exons
identity = 0.993
5'(0.993;1.000;1.000;1.000;0.997)3'
coverage = 1.000
EC number :
EC 3.1.3.53
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23, cyto 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001475)
HIX0001475
HIT000059564
(
AB050642
)
Representative transcript
(Protein phosphatase 1 regulatory subunit 12B isoform d.)
genome : 202,431,871 - 202,550,280 (118,410)
query : 1 - 2,227 (2,227/2,227)
12 exons
identity = 0.990
5'(0.993;1.000;1.000;1.000;0.984;0.991)3'
coverage = 1.000
EC number :
EC 3.1.3.53
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23, cyto 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001475)
HIX0001475
HIT000113282 (
ENST00000290419
)
(Conserved hypothetical protein.)
genome : 202,431,871 - 202,550,280 (118,410)
query : 1 - 2,231 (2,231/2,231)
12 exons
identity = 0.996
5'(0.993;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23, cyto 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001475)
HIX0001475
HIT000594863 (
ENST00000491336
)
(Conserved hypothetical protein.)
genome : 202,431,871 - 202,550,280 (118,410)
query : 1 - 2,046 (2,046/2,046)
11 exons
identity = 0.995
5'(0.993;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23, cyto 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001475)
HIX0001475
HIT000570932 (
ENST00000466273
)
(Conserved hypothetical protein.)
genome : 202,470,986 - 202,533,607 (62,622)
query : 1 - 347 (347/347)
4 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, cyto_nucl 11.5, extr 9, cyto 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001475)
HIX0001475
HIT000656158 (
NM_001197131
)
(Conserved hypothetical protein.)
genome : 202,509,242 - 202,557,697 (48,456)
query : 1 - 8,596 (8,596/8,596)
6 exons
identity = 0.999
5'(0.944;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.53
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001475)
HIX0001475
HIT000563810
(
AB588820
)
(Protein phosphatase 1 regulatory subunit 12B isoform g.)
genome : 202,509,242 - 202,549,705 (40,464)
query : 1 - 604 (604/604)
6 exons
identity = 0.987
5'(0.944;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.53
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001475)
HIX0200120
HIT000049547
(
AK130276
)
Representative transcript
(Conserved hypothetical protein.)
genome : 202,518,491 - 202,523,666 (5,176)
query : 1 - 5,177 (5,177/5,177)
1 exon
identity = 0.997
5'(0.997)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto_nucl 6.66667, cyto 5.5, mito 5,
cyto_pero 5, mito_nucl 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200120)
HIX0001475
HIT000348549 (
ENST00000367269
)
(Conserved hypothetical protein.)
genome : 202,527,746 - 202,536,955 (9,210)
query : 1 - 576 (576/576)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001475)
HIX0001475
HIT000569988 (
ENST00000465284
)
(Conserved hypothetical protein.)
genome : 202,536,552 - 202,549,966 (13,415)
query : 1 - 564 (564/564)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 12, nucl 8, extr 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001475)
HIX0001475
HIT000566929 (
ENST00000462074
)
(Conserved hypothetical protein.)
genome : 202,536,646 - 202,549,970 (13,325)
query : 1 - 551 (551/551)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto_nucl 12.5, extr 6, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001475)
HIX0001475
HIT000023091
(
AK098261
)
(Conserved hypothetical protein.)
genome : 202,544,046 - 202,546,378 (2,333)
query : 1 - 2,334 (2,334/2,334)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14, cyto_nucl 11.5, extr 8, cyto 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001475)
HIX0001475
HIT000000219
(
AB007972
)
(Conserved hypothetical protein.)
genome : 202,551,930 - 202,557,697 (5,768)
query : 1 - 5,770 (5,770/5,770)
1 exon
identity = 0.995
5'(0.995)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 14, extr 8, cyto 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001475)
HIX0001475
HIT000461318
(
DQ594787
)
(Non-protein coding transcript.)
genome : 202,552,523 - 202,552,553 (31)
query : 1 - 31 (31/31)
1 exon
identity = 0.968
5'(0.968)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001475)
HIX0001475
HIT000464915
(
DQ598384
)
(Non-protein coding transcript.)
genome : 202,552,721 - 202,552,750 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001475)
HIX0001475
HIT000459433
(
DQ592902
)
(Non-protein coding transcript.)
genome : 202,552,975 - 202,553,005 (31)
query : 1 - 31 (31/31)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001475)
HIX0001475
HIT000024011
(
AL050133
)
(Conserved hypothetical protein.)
genome : 202,554,833 - 202,557,697 (2,865)
query : 1 - 2,865 (2,865/2,884)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 0.993
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 14, extr 8, cyto 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001475)
HIX0001475
HIT000024622
(
AL117460
)
(Conserved hypothetical protein.)
genome : 202,555,713 - 202,557,697 (1,985)
query : 1 - 1,985 (1,985/2,118)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 14, extr 8, cyto 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001475)
HIX0001475
HIT000023788
(
AL049388
)
(Conserved hypothetical protein.)
genome : 202,556,249 - 202,557,697 (1,449)
query : 2 - 1,450 (1,449/1,467)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 14, extr 8, cyto 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001475)
HIX0199880
HIT000065747
(
AF070580
)
(Hypothetical protein.)
genome : 202,559,726 - 202,561,447 (1,722)
query : 1 - 1,669 (1,669/1,688)
2 exons
identity = 0.996
3'(0.998;0.984)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199880)
HIX0199880
HIT000215450 (
NM_177402
)
(Synaptotagmin-2; Synaptotagmin II; SytII;)
genome : 202,559,724 - 202,679,551 (119,828)
query : 1 - 7,604 (7,604/7,604)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 12.5, cyto_mito 10.8333, cyto 8,
cyto_nucl 7.83333, nucl 6.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199880)
HIX0199880
HIT000348548 (
ENST00000367268
)
(Synaptotagmin-2; Synaptotagmin II; SytII;)
genome : 202,559,724 - 202,679,545 (119,822)
query : 1 - 7,598 (7,598/7,598)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 12.5, cyto_mito 10.8333, cyto 8,
cyto_nucl 7.83333, nucl 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199880)
HIX0199880
HIT000348547 (
ENST00000367267
)
(Synaptotagmin-2; Synaptotagmin II; SytII;)
genome : 202,559,724 - 202,612,581 (52,858)
query : 1 - 7,614 (7,614/7,614)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 12.5, cyto_mito 10.8333, cyto 8,
cyto_nucl 7.83333, nucl 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199880)
HIX0199880
HIT000560390 (
NM_001136504
)
(Synaptotagmin-2; Synaptotagmin II; SytII;)
genome : 202,559,724 - 202,612,581 (52,858)
query : 1 - 7,614 (7,614/7,614)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 12.5, cyto_mito 10.8333, cyto 8,
cyto_nucl 7.83333, nucl 6.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199880)
HIX0214096
HIT000044383
(
AK124510
)
Representative transcript
(Hypothetical protein.)
genome : 202,559,727 - 202,563,647 (3,921)
query : 1 - 3,666 (3,666/3,667)
2 exons
identity = 0.997
5'(0.994;0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto_nucl 17, cyto 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214096)
HIX0199880
HIT000043317
(
AK123444
)
(Hypothetical protein.)
genome : 202,562,894 - 202,564,496 (1,603)
query : 1 - 1,615 (1,615/1,738)
1 exon
identity = 0.990
3'(0.990)5'
coverage = 0.935
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 28, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199880)
HIX0199880
HIT000015539
(
AK090672
)
Representative transcript
(Synaptotagmin-2; Synaptotagmin II; SytII;)
genome : 202,564,888 - 202,679,545 (114,658)
query : 1 - 2,422 (2,422/2,422)
9 exons
identity = 0.995
3'(0.990;1.000;1.000;1.000;1.000;1.000;1.000;
0.995;1.000)5'
coverage = 1.000
InterPro :
IPR000008 : C2 domain
IPR001565 : Synaptotagmin
GO :
0005215 : Molecular Function : transporter activity
0005515 : Molecular Function : protein binding
0006810 : Biological Process : transport
0008021 : Cellular Component : synaptic vesicle
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 12.5, cyto_mito 10.8333, cyto 8,
cyto_nucl 7.83333, nucl 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199880)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK036357
Danio
sp. (Zebrafish) : ENSDART00000051908
Monodelphis
sp. (Opossum) : ENSMODT00000000835
Oryzias
sp. (Medaka) : ENSORLT00000008624
Oryzias
sp. (Medaka) : ENSORLT00000008980
Pongo
sp. (Orangutan) : ENSPPYT00000000401
Tetraodon
sp. (Tetraodon) : GSTENT00013037001
Rattus
sp. (Rat) : M64488
Danio
sp. (Zebrafish) : NM_001089461
Takifugu
sp. (Fugu) : SINFRUT00000138780
Macaca
sp. (Macaque) : XM_001095384
Equus
sp. (Horse) : XM_001916224
Danio
sp. (Zebrafish) : XM_691185
Canis
sp. (Dog) : XM_843733
Pan
sp. (Chimpanzee) : XR_023243
HIX0199880
HIT000019285
(
AK094430
)
(Synaptotagmin-2; Synaptotagmin II; SytII;)
genome : 202,565,183 - 202,612,581 (47,399)
query : 1 - 2,150 (2,150/2,251)
9 exons
identity = 0.990
3'(0.979;0.993;1.000;1.000;1.000;1.000;1.000;
0.995;1.000)5'
coverage = 0.955
InterPro :
IPR000008 : C2 domain
IPR001565 : Synaptotagmin
GO :
0005215 : Molecular Function : transporter activity
0005515 : Molecular Function : protein binding
0006810 : Biological Process : transport
0008021 : Cellular Component : synaptic vesicle
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 12.5, cyto_mito 10.8333, cyto 8,
cyto_nucl 7.83333, nucl 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199880)
HIX0199880
HIT000336241
(
BC100814
)
(Synaptotagmin-2; Synaptotagmin II; SytII;)
genome : 202,565,155 - 202,679,416 (114,262)
query : 1 - 2,028 (2,028/2,028)
9 exons
identity = 0.995
3'(0.988;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000008 : C2 domain
IPR001565 : Synaptotagmin
GO :
0005215 : Molecular Function : transporter activity
0005515 : Molecular Function : protein binding
0006810 : Biological Process : transport
0008021 : Cellular Component : synaptic vesicle
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 12.5, cyto_mito 10.8333, cyto 8,
cyto_nucl 7.83333, nucl 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199880)
HIX0199880
HIT000336242
(
BC100815
)
(Synaptotagmin-2; Synaptotagmin II; SytII;)
genome : 202,565,155 - 202,679,416 (114,262)
query : 1 - 2,032 (2,032/2,032)
9 exons
identity = 0.997
3'(0.994;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000008 : C2 domain
IPR001565 : Synaptotagmin
GO :
0005215 : Molecular Function : transporter activity
0005515 : Molecular Function : protein binding
0006810 : Biological Process : transport
0008021 : Cellular Component : synaptic vesicle
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 12.5, cyto_mito 10.8333, cyto 8,
cyto_nucl 7.83333, nucl 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199880)
HIX0199880
HIT000336243
(
BC100817
)
(Synaptotagmin-2; Synaptotagmin II; SytII;)
genome : 202,565,155 - 202,679,416 (114,262)
query : 1 - 2,018 (2,018/2,018)
9 exons
identity = 0.988
3'(0.974;1.000;1.000;1.000;1.000;1.000;1.000;
0.995;1.000)5'
coverage = 1.000
InterPro :
IPR000008 : C2 domain
IPR001565 : Synaptotagmin
GO :
0005215 : Molecular Function : transporter activity
0005515 : Molecular Function : protein binding
0006810 : Biological Process : transport
0008021 : Cellular Component : synaptic vesicle
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 12.5, cyto_mito 10.8333, cyto 8,
cyto_nucl 7.83333, nucl 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199880)
HIX0199880
HIT000386316
(
BC100816
)
(Synaptotagmin-2.)
genome : 202,565,155 - 202,679,416 (114,262)
query : 1 - 1,683 (1,683/1,683)
7 exons
identity = 0.998
3'(0.997;0.993;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000008 : C2 domain
IPR001565 : Synaptotagmin
GO :
0005215 : Molecular Function : transporter activity
0005515 : Molecular Function : protein binding
0006810 : Biological Process : transport
0008021 : Cellular Component : synaptic vesicle
0016020 : Cellular Component : membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, cyto_nucl 17, nucl 15
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199880)
HIX0160714
HIT000526507 (
ENST00000428573
)
(Non-protein coding transcript.)
genome : 202,573,396 - 202,574,421 (1,026)
query : 1 - 314 (314/314)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0160714)
HIX0199880
HIT000713018_01 (
ENST00000601278
)
(Synaptotagmin-2.)
genome : 202,574,700 - 202,574,900 (201)
query : 1 - 201 (201/201)
1 exon
identity = 0.965
3'(0.965)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 13, cyto 11, nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199880)
HIX0199880
HIT000680347_01 (
ENST00000567334
)
(Synaptotagmin-2.)
genome : 202,574,723 - 202,574,900 (178)
query : 1 - 178 (178/178)
1 exon
identity = 0.966
3'(0.966)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, mito 14, cyto_mito 14
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199880)
HIX0056905
HIT000338635
(
BC107071
)
Representative transcript
(Conserved hypothetical protein.)
genome : 202,583,990 - 202,585,495 (1,506)
query : 7 - 1,512 (1,506/1,524)
1 exon
identity = 0.997
3'(0.997)5'
coverage = 0.988
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15, cyto 9, mito 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056905)
HIX0023741
HIT000046596
(
AK126723
)
Representative transcript
(Conserved hypothetical protein.)
genome : 202,590,417 - 202,594,367 (3,951)
query : 1 - 3,291 (3,291/3,291)
3 exons
identity = 0.996
5'(0.998;0.975;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16, nucl 14.5, cyto 12.5, extr 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023741)
HIX0160213
HIT000509365 (
ENST00000411431
)
(Non-protein coding transcript.)
genome : 202,601,556 - 202,602,039 (484)
query : 1 - 365 (365/365)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0160213)
HIX0023747
HIT000046887
(
AK127014
)
Representative transcript
(Conserved hypothetical protein.)
genome : 202,636,859 - 202,640,912 (4,054)
query : 1 - 4,053 (4,053/4,053)
1 exon
identity = 0.998
5'(0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, nucl 9.5, cyto_nucl 7.5, cyto 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023747)
HIX0001478
HIT000244700
(
AJ132440
)
Representative transcript
(Lysine-specific demethylase 5B; EC=1.14.11.-; Cancer/testis antigen 31; CT31; Histone demethylase JARID1B; Jumonji/ARID domain-containing protein 1B; PLU-1; Retinoblastoma-binding protein 2 homolog 1; RBP2-H1;)
genome : 202,696,532 - 202,777,522 (80,991)
query : 1 - 6,356 (6,356/6,394)
27 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.990;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 1.14.11.-
InterPro :
IPR001606 : ARID DNA-binding domain
IPR001965 : Zinc finger, PHD-type
IPR003347 : JmjC domain
IPR003349 : JmjN domain
IPR004198 : Zinc finger, C5HC2-type
IPR011011 : Zinc finger, FYVE/PHD-type
IPR013637 : Lysine-specific demethylase-like domain
IPR019786 : Zinc finger, PHD-type, conserved site
IPR019787 : Zinc finger, PHD-finger
GO :
0003677 : Molecular Function : DNA binding
0005515 : Molecular Function : protein binding
0005622 : Cellular Component : intracellular
0005634 : Cellular Component : nucleus
0008270 : Molecular Function : zinc ion binding
0016706 : Molecular Function : oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
0055114 : Biological Process : oxidation-reduction process
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18.5, cyto_nucl 15.5, cyto 11.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001478)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB172699
Gallus
sp. (Chicken) : AJ851588
Mus
sp. (Mouse) : AY082429
Danio
sp. (Zebrafish) : BC061452
Danio
sp. (Zebrafish) : BC071280
Equus
sp. (Horse) : ENSECAT00000015344
Oryzias
sp. (Medaka) : ENSORLT00000018508
Oryzias
sp. (Medaka) : ENSORLT00000018795
Pongo
sp. (Orangutan) : ENSPPYT00000000400
Tetraodon
sp. (Tetraodon) : GSTENT00013608001
Tetraodon
sp. (Tetraodon) : GSTENT00023473001
Takifugu
sp. (Fugu) : SINFRUT00000130319
Takifugu
sp. (Fugu) : SINFRUT00000144202
Rattus
sp. (Rat) : XM_001062221
Monodelphis
sp. (Opossum) : XM_001364144
Pan
sp. (Chimpanzee) : XM_514104
Canis
sp. (Dog) : XM_537122
Bos
sp. (Cow) : XM_612405
HIX0001478
HIT000024951
(
AL133048
)
(Lysine-specific demethylase 5B.)
genome : 202,696,526 - 202,722,187 (25,662)
query : 1 - 4,727 (4,727/4,749)
16 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;0.994;
1.000;1.000;1.000;1.000;1.000;0.995;0.995;
1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001965 : Zinc finger, PHD-type
IPR003347 : JmjC domain
IPR004198 : Zinc finger, C5HC2-type
IPR011011 : Zinc finger, FYVE/PHD-type
IPR013637 : Lysine-specific demethylase-like domain
IPR019786 : Zinc finger, PHD-type, conserved site
IPR019787 : Zinc finger, PHD-finger
GO :
0005515 : Molecular Function : protein binding
0005634 : Cellular Component : nucleus
0008270 : Molecular Function : zinc ion binding
0016706 : Molecular Function : oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
0055114 : Biological Process : oxidation-reduction process
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto 8, cysk 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001478)
HIX0001478
HIT000015030
(
AK074250
)
(Lysine-specific demethylase 5B.)
genome : 202,696,532 - 202,710,834 (14,303)
query : 1 - 3,662 (3,662/3,685)
9 exons
identity = 0.998
3'(0.998;0.997;1.000;1.000;1.000;1.000;0.994;
1.000;0.997)5'
coverage = 0.998
InterPro :
IPR001965 : Zinc finger, PHD-type
IPR011011 : Zinc finger, FYVE/PHD-type
IPR013637 : Lysine-specific demethylase-like domain
IPR019786 : Zinc finger, PHD-type, conserved site
IPR019787 : Zinc finger, PHD-finger
GO :
0005515 : Molecular Function : protein binding
0008270 : Molecular Function : zinc ion binding
0016706 : Molecular Function : oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
0055114 : Biological Process : oxidation-reduction process
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001478)
HIX0001478
HIT000028427
(
AL833515
)
(Lysine-specific demethylase 5B.)
genome : 202,696,532 - 202,699,672 (3,141)
query : 1 - 3,141 (3,141/3,162)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, extr 10, mito_nucl 10
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001478)
HIX0001478
HIT000245549
(
AJ243706
)
(Lysine-specific demethylase 5B; EC=1.14.11.-; Cancer/testis antigen 31; CT31; Histone demethylase JARID1B; Jumonji/ARID domain-containing protein 1B; PLU-1; Retinoblastoma-binding protein 2 homolog 1; RBP2-H1;)
genome : 202,696,532 - 202,778,598 (82,067)
query : 1 - 7,435 (7,435/7,450)
27 exons
identity = 0.998
3'(0.998;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.992;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.987;0.994)5'
coverage = 1.000
EC number :
EC 1.14.11.-
InterPro :
IPR001606 : ARID DNA-binding domain
IPR001965 : Zinc finger, PHD-type
IPR003347 : JmjC domain
IPR003349 : JmjN domain
IPR004198 : Zinc finger, C5HC2-type
IPR011011 : Zinc finger, FYVE/PHD-type
IPR013637 : Lysine-specific demethylase-like domain
IPR019786 : Zinc finger, PHD-type, conserved site
IPR019787 : Zinc finger, PHD-finger
GO :
0003677 : Molecular Function : DNA binding
0005515 : Molecular Function : protein binding
0005622 : Cellular Component : intracellular
0005634 : Cellular Component : nucleus
0008270 : Molecular Function : zinc ion binding
0016706 : Molecular Function : oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
0055114 : Biological Process : oxidation-reduction process
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 13, nucl 11, cyto_mito 9.5, cyto_nucl 8.83333,
mito_pero 7.33333, cyto 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001478)
HIX0001478
HIT000203205 (
NM_006618
)
(Lysine-specific demethylase 5B; EC=1.14.11.-; Cancer/testis antigen 31; CT31; Histone demethylase JARID1B; Jumonji/ARID domain-containing protein 1B; PLU-1; Retinoblastoma-binding protein 2 homolog 1; RBP2-H1;)
genome : 202,696,532 - 202,777,549 (81,018)
query : 1 - 6,383 (6,383/6,393)
27 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 1.14.11.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18.5, cyto_nucl 15.5, cyto 11.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001478)
HIX0001478
HIT000024943
(
AL133040
)
(Lysine-specific demethylase 5B.)
genome : 202,696,532 - 202,736,182 (39,651)
query : 1 - 5,681 (5,681/5,690)
23 exons
identity = 0.999
3'(0.997;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001965 : Zinc finger, PHD-type
IPR003347 : JmjC domain
IPR004198 : Zinc finger, C5HC2-type
IPR011011 : Zinc finger, FYVE/PHD-type
IPR013637 : Lysine-specific demethylase-like domain
IPR019786 : Zinc finger, PHD-type, conserved site
IPR019787 : Zinc finger, PHD-finger
GO :
0005515 : Molecular Function : protein binding
0005634 : Cellular Component : nucleus
0008270 : Molecular Function : zinc ion binding
0016706 : Molecular Function : oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
0055114 : Biological Process : oxidation-reduction process
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto_nucl 16, cyto 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001478)
HIX0001478
HIT000348545 (
ENST00000367265
)
(Lysine-specific demethylase 5B; EC=1.14.11.-; Cancer/testis antigen 31; CT31; Histone demethylase JARID1B; Jumonji/ARID domain-containing protein 1B; PLU-1; Retinoblastoma-binding protein 2 homolog 1; RBP2-H1;)
genome : 202,696,526 - 202,778,598 (82,073)
query : 1 - 7,438 (7,438/7,438)
27 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 1.14.11.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23, cyto_nucl 16.5, cyto 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001478)
HIX0001478
HIT000005795
(
AK022521
)
(Lysine-specific demethylase 5B.)
genome : 202,696,533 - 202,705,442 (8,910)
query : 1 - 3,104 (3,104/3,104)
7 exons
identity = 0.999
3'(0.999;1.000;1.000;0.991;1.000;0.994;1.000)5'
coverage = 1.000
InterPro :
IPR001965 : Zinc finger, PHD-type
IPR011011 : Zinc finger, FYVE/PHD-type
IPR019786 : Zinc finger, PHD-type, conserved site
IPR019787 : Zinc finger, PHD-finger
GO :
0005515 : Molecular Function : protein binding
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27, cyto_nucl 16.5, cyto 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001478)
HIX0001478
HIT000067480
(
AF087481
)
(Lysine-specific demethylase 5B.)
genome : 202,696,571 - 202,777,546 (80,976)
query : 7 - 6,455 (6,449/6,455)
28 exons
identity = 0.998
3'(0.999;1.000;1.000;0.965;0.994;1.000;1.000;
1.000;1.000;1.000;1.000;0.984;0.995;0.995;
0.975;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.999
InterPro :
IPR001606 : ARID DNA-binding domain
IPR001965 : Zinc finger, PHD-type
IPR003347 : JmjC domain
IPR003349 : JmjN domain
IPR004198 : Zinc finger, C5HC2-type
IPR011011 : Zinc finger, FYVE/PHD-type
IPR013637 : Lysine-specific demethylase-like domain
IPR019786 : Zinc finger, PHD-type, conserved site
IPR019787 : Zinc finger, PHD-finger
GO :
0003677 : Molecular Function : DNA binding
0005515 : Molecular Function : protein binding
0005622 : Cellular Component : intracellular
0005634 : Cellular Component : nucleus
0008270 : Molecular Function : zinc ion binding
0016706 : Molecular Function : oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
0055114 : Biological Process : oxidation-reduction process
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21.5, cyto_nucl 16, cyto 9.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001478)
HIX0001478
HIT000348544 (
ENST00000367264
)
(Lysine-specific demethylase 5B.)
genome : 202,696,571 - 202,777,546 (80,976)
query : 1 - 6,449 (6,449/6,449)
28 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21.5, cyto_nucl 16, cyto 9.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001478)
HIX0001478
HIT000024974
(
AL133072
)
(Lysine-specific demethylase 5B.)
genome : 202,697,328 - 202,718,205 (20,878)
query : 1 - 3,588 (3,588/3,676)
14 exons
identity = 0.999
3'(1.000;0.997;1.000;1.000;1.000;1.000;0.994;
1.000;1.000;1.000;1.000;1.000;0.995;0.992)5'
coverage = 1.000
InterPro :
IPR001965 : Zinc finger, PHD-type
IPR004198 : Zinc finger, C5HC2-type
IPR011011 : Zinc finger, FYVE/PHD-type
IPR013637 : Lysine-specific demethylase-like domain
IPR019786 : Zinc finger, PHD-type, conserved site
IPR019787 : Zinc finger, PHD-finger
GO :
0005515 : Molecular Function : protein binding
0005634 : Cellular Component : nucleus
0008270 : Molecular Function : zinc ion binding
0016706 : Molecular Function : oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
0055114 : Biological Process : oxidation-reduction process
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13.5, cyto 13, nucl 12, pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001478)
HIX0001478
HIT000025910
(
AL137622
)
(Lysine-specific demethylase 5B.)
genome : 202,697,552 - 202,710,687 (13,136)
query : 1 - 2,495 (2,495/2,514)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;0.994;
1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001965 : Zinc finger, PHD-type
IPR011011 : Zinc finger, FYVE/PHD-type
IPR013637 : Lysine-specific demethylase-like domain
IPR019786 : Zinc finger, PHD-type, conserved site
IPR019787 : Zinc finger, PHD-finger
GO :
0005515 : Molecular Function : protein binding
0008270 : Molecular Function : zinc ion binding
0016706 : Molecular Function : oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
0055114 : Biological Process : oxidation-reduction process
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24.5, cyto_nucl 16, cyto 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001478)
HIX0001478
HIT000464422
(
DQ597891
)
(Non-protein coding transcript.)
genome : 202,698,251 - 202,698,280 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001478)
HIX0001478
HIT000058427
(
AB015348
)
(Lysine-specific demethylase 5B.)
genome : 202,698,444 - 202,705,364 (6,921)
query : 1 - 1,630 (1,630/1,630)
6 exons
identity = 0.987
3'(0.971;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001965 : Zinc finger, PHD-type
IPR011011 : Zinc finger, FYVE/PHD-type
IPR019786 : Zinc finger, PHD-type, conserved site
IPR019787 : Zinc finger, PHD-finger
GO :
0005515 : Molecular Function : protein binding
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23, cyto_nucl 15.5, cyto 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001478)
HIX0001478
HIT000577181 (
ENST00000472822
)
(Lysine-specific demethylase 5B.)
genome : 202,698,444 - 202,705,364 (6,921)
query : 1 - 1,648 (1,648/1,648)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23, cyto_nucl 15.5, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001478)
HIX0001478
HIT000594688 (
ENST00000491153
)
(Lysine-specific demethylase 5B.)
genome : 202,699,029 - 202,701,269 (2,241)
query : 1 - 596 (596/596)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25, cyto_nucl 16.5, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001478)
HIX0001478
HIT000042625
(
AK122752
)
(Lysine-specific demethylase 5B.)
genome : 202,699,033 - 202,776,427 (77,395)
query : 1 - 4,418 (4,418/4,418)
26 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001606 : ARID DNA-binding domain
IPR001965 : Zinc finger, PHD-type
IPR003347 : JmjC domain
IPR004198 : Zinc finger, C5HC2-type
IPR011011 : Zinc finger, FYVE/PHD-type
IPR013637 : Lysine-specific demethylase-like domain
IPR019786 : Zinc finger, PHD-type, conserved site
IPR019787 : Zinc finger, PHD-finger
GO :
0003677 : Molecular Function : DNA binding
0005515 : Molecular Function : protein binding
0005622 : Cellular Component : intracellular
0005634 : Cellular Component : nucleus
0008270 : Molecular Function : zinc ion binding
0016706 : Molecular Function : oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
0055114 : Biological Process : oxidation-reduction process
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14, nucl 7.5, extr 6, cyto_nucl 5.5, cyto 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001478)
HIX0001478
HIT000104657 (
ENST00000235790
)
(Lysine-specific demethylase 5B.)
genome : 202,699,033 - 202,776,427 (77,395)
query : 1 - 4,418 (4,418/4,418)
26 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14, nucl 7.5, extr 6, cyto_nucl 5.5, cyto 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001478)
HIX0001478
HIT000005827
(
AK022553
)
(Lysine-specific demethylase 5B.)
genome : 202,699,033 - 202,725,649 (26,617)
query : 8 - 3,114 (3,107/3,114)
17 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.995;1.000;
1.000;1.000;0.994)5'
coverage = 0.998
InterPro :
IPR001965 : Zinc finger, PHD-type
IPR003347 : JmjC domain
IPR004198 : Zinc finger, C5HC2-type
IPR011011 : Zinc finger, FYVE/PHD-type
IPR013637 : Lysine-specific demethylase-like domain
IPR019786 : Zinc finger, PHD-type, conserved site
IPR019787 : Zinc finger, PHD-finger
GO :
0005515 : Molecular Function : protein binding
0005634 : Cellular Component : nucleus
0008270 : Molecular Function : zinc ion binding
0016706 : Molecular Function : oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
0055114 : Biological Process : oxidation-reduction process
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 15.5, cyto 13.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001478)
HIX0001478
HIT000003874
(
AK001400
)
(Lysine-specific demethylase 5B.)
genome : 202,699,033 - 202,719,822 (20,790)
query : 1 - 2,513 (2,513/2,513)
14 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;0.993;
0.994;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19.5, cyto_nucl 13, extr 6, cyto 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001478)
HIX0203690
HIT000464725_12
(
DQ598194
)
Representative transcript
(Non-protein coding transcript.)
genome : 202,708,916 - 202,708,945 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0203690)
HIX0001478
HIT000601503 (
ENST00000498276
)
(Lysine-specific demethylase 5B.)
genome : 202,715,005 - 202,715,723 (719)
query : 1 - 560 (560/560)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, mito 12, cyto 6, extr_plas 6, E.R._mito 6,
mito_pero 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001478)
HIX0001478
HIT000554114 (
ENST00000456180
)
(Lysine-specific demethylase 5B.)
genome : 202,724,382 - 202,728,077 (3,696)
query : 1 - 548 (548/558)
4 exons
identity = 0.991
3'(0.975;1.000;1.000;1.000)5'
coverage = 0.982
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 21, cyto_nucl 13.5, extr 5, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001478)
HIX0001478
HIT000714244 (
ENST00000602511
)
(Lysine-specific demethylase 5B.)
genome : 202,736,159 - 202,777,253 (41,095)
query : 1 - 542 (542/542)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 13, extr 6, nucl 3, extr_plas 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001478)
HIX0160766
HIT000528384_01 (
ENST00000430450
)
(Cytochrome c oxidase subunit VIIc family protein.)
genome : 202,736,357 - 202,736,546 (190)
query : 1 - 190 (190/190)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 10, extr 8, cyto_nucl 7.5, nucl 6.5, cyto 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0160766)
HIX0001478
HIT000575041 (
ENST00000470573
)
(Lysine-specific demethylase 5B.)
genome : 202,742,345 - 202,775,879 (33,535)
query : 1 - 535 (535/535)
4 exons
identity = 0.993
3'(1.000;1.000;1.000;0.985)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 22.5, cyto_nucl 13, mito 5, nucl 2.5,
E.R._mito 2.5, mito_pero 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001478)
HIX0001478
HIT000572096 (
ENST00000467487
)
(Non-protein coding transcript.)
genome : 202,743,758 - 202,776,333 (32,576)
query : 1 - 529 (529/529)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001478)
HIX0161183
HIT000542395 (
ENST00000444461
)
(Mitochondrial carrier domain containing protein.)
genome : 202,765,158 - 202,766,222 (1,065)
query : 1 - 1,065 (1,065/1,065)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 19, extr 3.5, extr_plas 3.5, pero 3, plas 2.5,
lyso 2, cyto_pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0161183)
HIX0001478
HIT000045619
(
AK125746
)
(Lysine-specific demethylase 5B.)
genome : 202,776,790 - 202,778,587 (1,798)
query : 1 - 1,798 (1,798/1,800)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 0.999
InterPro :
IPR003349 : JmjN domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto_nucl 16, cyto 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001478)
HIX0029282
HIT000095370
(
BC038775
)
Representative transcript
(Hypothetical short protein.)
genome : 202,779,369 - 202,779,957 (589)
query : 1 - 589 (589/625)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 10, extr 8, cyto_mito 8, nucl 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0029282)
HIX0029282
HIT000677260 (
ENST00000564127
)
(Hypothetical short protein.)
genome : 202,779,366 - 202,779,957 (592)
query : 1 - 592 (592/592)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 10, extr 8, cyto_mito 8, nucl 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0029282)
HIX0160391
HIT000726616 (
NR_046325
)
(Hypothetical protein.)
genome : 202,780,074 - 202,781,041 (968)
query : 1 - 764 (764/764)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, cyto_nucl 8.33333, nucl 7.5, extr_plas 7.5,
cyto 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0160391)
HIX0160391
HIT000726617 (
NR_046326
)
(Hypothetical short protein.)
genome : 202,780,074 - 202,781,041 (968)
query : 1 - 650 (650/650)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto_nucl 5.66667, mito 5, cyto 4.5,
cyto_pero 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0160391)
HIX0160391
HIT000666556 (
ENST00000553157
)
(Hypothetical short protein.)
genome : 202,780,082 - 202,781,284 (1,203)
query : 1 - 551 (551/551)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0160391)
HIX0160391
HIT000515196 (
ENST00000417262
)
(Hypothetical protein.)
genome : 202,780,090 - 202,781,041 (952)
query : 1 - 748 (748/748)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, cyto_nucl 8.33333, nucl 7.5, extr_plas 7.5,
cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0160391)
HIX0160391
HIT000523229 (
ENST00000425295
)
(Hypothetical short protein.)
genome : 202,780,090 - 202,781,041 (952)
query : 1 - 634 (634/634)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto_nucl 5.66667, mito 5, cyto 4.5,
cyto_pero 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0160391)
HIX0028734
HIT000092882
(
BC032956
)
Representative transcript
(Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like protein LOC641515 homolog;)
genome : 202,789,394 - 202,796,340 (6,947)
query : 7 - 2,803 (2,797/2,816)
3 exons
identity = 0.999
5'(1.000;1.000;0.999)3'
coverage = 0.998
InterPro :
IPR006759 : Glycosyl transferase family 54
GO :
0005975 : Biological Process : carbohydrate metabolic process
0016020 : Cellular Component : membrane
0016758 : Molecular Function : transferase activity, transferring hexosyl groups
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, cyto_nucl 8.33333, cyto 6, nucl 5.5,
mito 4.5, cyto_pero 4.16667
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028734)
Ortholog candidate ( ->
Evola
)
Gallus
sp. (Chicken) : AB040608
Mus
sp. (Mouse) : AK016512
Danio
sp. (Zebrafish) : BC085406
Equus
sp. (Horse) : ENSECAT00000005491
Pongo
sp. (Orangutan) : ENSPPYT00000000399
Tetraodon
sp. (Tetraodon) : GSTENT00025676001
Takifugu
sp. (Fugu) : SINFRUT00000136661
Rattus
sp. (Rat) : XM_001062423
Monodelphis
sp. (Opossum) : XM_001369507
Canis
sp. (Dog) : XM_537121
Bos
sp. (Cow) : XM_594744
Macaca
sp. (Macaque) : XR_013263
Pan
sp. (Chimpanzee) : XR_024122
HIX0028734
HIT000126703 (
ENST00000330493
)
(Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like protein LOC641515 homolog;)
genome : 202,789,394 - 202,796,340 (6,947)
query : 1 - 2,797 (2,797/2,810)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, cyto_nucl 8.33333, cyto 6, nucl 5.5,
mito 4.5, cyto_pero 4.16667
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028734)
HIX0028734
HIT000663436 (
ENST00000549576
)
(Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like protein LOC641515 homolog;)
genome : 202,792,385 - 202,796,340 (3,956)
query : 1 - 2,381 (2,381/2,394)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, cyto_nucl 8.33333, cyto 6, nucl 5.5,
mito 4.5, cyto_pero 4.16667
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028734)
HIX0028734
HIT000660123 (
NR_038135
)
(Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like protein LOC641515 homolog;)
genome : 202,794,329 - 202,795,421 (1,093)
query : 1 - 1,093 (1,093/1,093)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto_nucl 8, extr_plas 8, cyto 6.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028734)
HIX0200044
HIT000096333
(
BC040684
)
Representative transcript
(Tubulin alpha-1C chain; Alpha-tubulin 6; Tubulin alpha-6 chain;)
genome : 202,819,225 - 202,830,683 (11,459)
query : 1 - 1,846 (1,846/1,971)
4 exons
identity = 0.997
3'(0.981;0.997;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000217 : Tubulin
IPR002452 : Alpha tubulin
IPR003008 : Tubulin/FtsZ, GTPase domain
GO :
0005200 : Molecular Function : structural constituent of cytoskeleton
0005525 : Molecular Function : GTP binding
0005874 : Cellular Component : microtubule
0007017 : Biological Process : microtubule-based process
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15, cyto_nucl 13, extr 10, cyto 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200044)
Ortholog candidate ( ->
Evola
)
Tetraodon
sp. (Tetraodon) : CR718721
Equus
sp. (Horse) : ENSECAT00000003985
Macaca
sp. (Macaque) : ENSMMUT00000029766
Oryzias
sp. (Medaka) : ENSORLT00000020601
Monodelphis
sp. (Opossum) : XM_001369303
Canis
sp. (Dog) : XM_547349
HIX0200044
HIT000541228 (
ENST00000443294
)
(Tubulin alpha-1C chain; Alpha-tubulin 6; Tubulin alpha-6 chain;)
genome : 202,820,956 - 202,830,736 (9,781)
query : 1 - 1,835 (1,835/1,835)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15, cyto_nucl 13, extr 10, cyto 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200044)
HIX0200044
HIT000547849 (
ENST00000449915
)
(Tubulin alpha-1C chain; Alpha-tubulin 6; Tubulin alpha-6 chain;)
genome : 202,822,090 - 202,828,350 (6,261)
query : 1 - 660 (660/660)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, nucl 13, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200044)
HIX0200044
HIT000540802 (
ENST00000442868
)
(Tubulin alpha-8 chain; Fragment;)
genome : 202,822,119 - 202,828,227 (6,109)
query : 1 - 1,262 (1,262/1,262)
4 exons
identity = 0.997
3'(1.000;0.993;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, cyto_nucl 11, extr 8, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200044)
HIX0200044
HIT000099086
(
BC049825
)
(Tubulin alpha chain;)
genome : 202,827,082 - 202,830,631 (3,550)
query : 1 - 488 (488/515)
3 exons
identity = 0.998
3'(0.995;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000217 : Tubulin
IPR002452 : Alpha tubulin
IPR003008 : Tubulin/FtsZ, GTPase domain
GO :
0005200 : Molecular Function : structural constituent of cytoskeleton
0005525 : Molecular Function : GTP binding
0005874 : Cellular Component : microtubule
0007017 : Biological Process : microtubule-based process
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, nucl 13, cyto_nucl 11.5, cyto 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200044)
HIX0200044
HIT000528048 (
ENST00000430114
)
(Tubulin alpha chain;)
genome : 202,827,056 - 202,830,748 (3,693)
query : 1 - 631 (631/631)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, nucl 13, cyto_nucl 11.5, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200044)
HIX0001479
HIT000012423
(
AK055809
)
Representative transcript
(Actin, cytoplasmic 2; Gamma-actin; Contains: Actin, cytoplasmic 2, N-terminally processed;)
genome : 202,830,882 - 202,844,369 (13,488)
query : 1 - 2,322 (2,322/2,322)
3 exons
identity = 0.999
5'(1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR004000 : Actin family
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, mito 13, cyto_nucl 3, nucl 2, cyto 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001479)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : XR_011528
Pan
sp. (Chimpanzee) : XR_024126
Monodelphis
sp. (Opossum) : XR_030206
HIX0001479
HIT000367205 (
NR_002929
)
(Actin, cytoplasmic 2; Gamma-actin; Contains: Actin, cytoplasmic 2, N-terminally processed;)
genome : 202,830,882 - 202,844,369 (13,488)
query : 1 - 2,321 (2,321/2,321)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, mito 13, cyto_nucl 3, nucl 2, cyto 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001479)
HIX0001479
HIT000554039 (
ENST00000456105
)
(Actin, cytoplasmic 2; Gamma-actin; Contains: Actin, cytoplasmic 2, N-terminally processed;)
genome : 202,830,882 - 202,844,369 (13,488)
query : 1 - 2,321 (2,321/2,321)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, mito 13, cyto_nucl 3, nucl 2, cyto 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001479)
HIX0001479
HIT000536878 (
ENST00000438944
)
(Actin, cytoplasmic 2; Gamma-actin; Contains: Actin, cytoplasmic 2, N-terminally processed;)
genome : 202,842,422 - 202,843,454 (1,033)
query : 1 - 1,033 (1,033/1,033)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, mito 13, cyto_nucl 3, nucl 2, cyto 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001479)
HIX0199978
HIT000199746 (
NM_002871
)
(Guanine nucleotide exchange factor MSS4; Rab-interacting factor;)
genome : 202,847,410 - 202,858,385 (10,976)
query : 1 - 3,227 (3,227/3,227)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, nucl 10, cyto_nucl 10, cyto 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199978)
HIX0199978
HIT000051910
(
BC037392
)
Representative transcript
(Guanine nucleotide exchange factor MSS4; Rab-interacting factor;)
genome : 202,848,087 - 202,858,263 (10,177)
query : 1 - 2,428 (2,428/2,452)
2 exons
identity = 0.998
3'(0.998;1.000)5'
coverage = 1.000
InterPro :
IPR007515 : Mss4
IPR011057 : Mss4-like
IPR011323 : Mss4/translationally controlled tumour-associated TCTP
GO :
0005085 : Molecular Function : guanyl-nucleotide exchange factor activity
0007264 : Biological Process : small GTPase mediated signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, nucl 10, cyto_nucl 10, cyto 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199978)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK165795
Danio
sp. (Zebrafish) : BC076288
Bos
sp. (Cow) : BC108219
Canis
sp. (Dog) : ENSCAFT00000016516
Equus
sp. (Horse) : ENSECAT00000005507
Monodelphis
sp. (Opossum) : ENSMODT00000000931
Oryzias
sp. (Medaka) : ENSORLT00000018530
Pongo
sp. (Orangutan) : ENSPPYT00000000398
Tetraodon
sp. (Tetraodon) : GSTENT00013608001
Rattus
sp. (Rat) : NM_001007678
Takifugu
sp. (Fugu) : SINFRUT00000181473
Macaca
sp. (Macaque) : XM_001106028
Gallus
sp. (Chicken) : XM_419250
Pan
sp. (Chimpanzee) : XM_514105
Rattus
sp. (Rat) : XM_574959
HIX0199978
HIT000348542 (
ENST00000367262
)
(Guanine nucleotide exchange factor MSS4; Rab-interacting factor;)
genome : 202,848,085 - 202,858,263 (10,179)
query : 1 - 2,430 (2,430/2,430)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, nucl 10, cyto_nucl 10, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199978)
HIX0199978
HIT000221239
(
U74324
)
(Guanine nucleotide exchange factor MSS4; Rab-interacting factor;)
genome : 202,848,089 - 202,858,229 (10,141)
query : 1 - 2,392 (2,392/2,392)
2 exons
identity = 0.999
3'(0.999;1.000)5'
coverage = 1.000
InterPro :
IPR007515 : Mss4
IPR011057 : Mss4-like
IPR011323 : Mss4/translationally controlled tumour-associated TCTP
GO :
0005085 : Molecular Function : guanyl-nucleotide exchange factor activity
0007264 : Biological Process : small GTPase mediated signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, nucl 10, cyto_nucl 10, cyto 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199978)
HIX0199978
HIT000216828
(
S78873
)
(Guanine nucleotide exchange factor MSS4; Rab-interacting factor;)
genome : 202,849,588 - 202,858,237 (8,650)
query : 2 - 903 (902/922)
2 exons
identity = 0.989
3'(0.991;0.978)5'
coverage = 0.978
InterPro :
IPR007515 : Mss4
IPR011057 : Mss4-like
IPR011323 : Mss4/translationally controlled tumour-associated TCTP
GO :
0005085 : Molecular Function : guanyl-nucleotide exchange factor activity
0007264 : Biological Process : small GTPase mediated signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, nucl 11, cyto_nucl 10.5, cyto 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199978)
HIX0199978
HIT000038352
(
BC018488
)
(Guanine nucleotide exchange factor MSS4; Rab-interacting factor;)
genome : 202,849,969 - 202,858,238 (8,270)
query : 1 - 521 (521/579)
2 exons
identity = 0.998
3'(0.997;1.000)5'
coverage = 0.994
InterPro :
IPR007515 : Mss4
IPR011057 : Mss4-like
IPR011323 : Mss4/translationally controlled tumour-associated TCTP
GO :
0005085 : Molecular Function : guanyl-nucleotide exchange factor activity
0007264 : Biological Process : small GTPase mediated signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, nucl 10, cyto_nucl 10, cyto 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199978)
HIX0199978
HIT000331318
(
AK223538
)
(Guanine nucleotide exchange factor MSS4; Rab-interacting factor;)
genome : 202,850,068 - 202,858,385 (8,318)
query : 1 - 569 (569/569)
2 exons
identity = 0.998
3'(0.996;1.000)5'
coverage = 1.000
InterPro :
IPR007515 : Mss4
IPR011057 : Mss4-like
IPR011323 : Mss4/translationally controlled tumour-associated TCTP
GO :
0005085 : Molecular Function : guanyl-nucleotide exchange factor activity
0007264 : Biological Process : small GTPase mediated signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, nucl 10, cyto_nucl 10, cyto 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199978)
HIX0199978
HIT000430766
(
AK311900
)
(Guanine nucleotide exchange factor MSS4; Rab-interacting factor;)
genome : 202,850,106 - 202,858,277 (8,172)
query : 1 - 422 (422/422)
2 exons
identity = 0.998
3'(1.000;0.994)5'
coverage = 1.000
InterPro :
IPR007515 : Mss4
IPR011057 : Mss4-like
IPR011323 : Mss4/translationally controlled tumour-associated TCTP
GO :
0005085 : Molecular Function : guanyl-nucleotide exchange factor activity
0007264 : Biological Process : small GTPase mediated signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, nucl 10, cyto_nucl 10, cyto 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199978)
HIX0199978
HIT000100053
(
BT007133
)
(Guanine nucleotide exchange factor MSS4; Rab-interacting factor;)
genome : 202,850,107 - 202,858,226 (8,120)
query : 1 - 371 (371/372)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 0.997
InterPro :
IPR007515 : Mss4
IPR011057 : Mss4-like
IPR011323 : Mss4/translationally controlled tumour-associated TCTP
GO :
0005085 : Molecular Function : guanyl-nucleotide exchange factor activity
0007264 : Biological Process : small GTPase mediated signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, nucl 10, cyto_nucl 10, cyto 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199978)
HIX0001481
HIT000348541_01 (
ENST00000367261
)
(Kelch-like protein 12; CUL3-interacting protein 1; DKIR homolog; hDKIR;)
genome : 202,860,228 - 202,896,390 (36,163)
query : 1 - 3,359 (3,359/3,359)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 16, cyto 12.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001481)
HIX0001481
HIT000010928
(
AK027656
)
(Kelch-like protein 12; CUL3-interacting protein 1; DKIR homolog; hDKIR;)
genome : 202,860,230 - 202,896,371 (36,142)
query : 1 - 3,338 (3,338/3,338)
12 exons
identity = 0.999
3'(0.999;1.000;1.000;0.994;1.000;1.000;1.000;
1.000;1.000;0.994;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000210 : BTB/POZ-like
IPR006652 : Kelch repeat type 1
IPR011333 : BTB/POZ fold
IPR011705 : BTB/Kelch-associated
IPR013069 : BTB/POZ
IPR015916 : Galactose oxidase, beta-propeller
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 16, cyto 12.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001481)
HIX0001481
HIT000208378 (
NM_021633
)
(Kelch-like protein 12; CUL3-interacting protein 1; DKIR homolog; hDKIR;)
genome : 202,860,230 - 202,896,371 (36,142)
query : 1 - 3,338 (3,338/3,338)
12 exons
identity = 0.999
3'(0.999;1.000;1.000;0.994;1.000;1.000;1.000;
1.000;1.000;0.994;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 16, cyto 12.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001481)
HIX0001481
HIT000049933
(
AK130662
)
(Kelch-like protein 12; CUL3-interacting protein 1; DKIR homolog; hDKIR;)
genome : 202,860,230 - 202,862,554 (2,325)
query : 9 - 1,756 (1,748/1,756)
2 exons
identity = 0.998
3'(0.997;1.000)5'
coverage = 0.995
InterPro :
IPR006652 : Kelch repeat type 1
IPR015916 : Galactose oxidase, beta-propeller
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, cyto_nucl 5.33333, cyto 5, nucl 4.5,
cyto_pero 3.33333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001481)
HIX0001481
HIT000076876
(
AF306688
)
(Kelch-like protein 12; CUL3-interacting protein 1; DKIR homolog; hDKIR;)
genome : 202,860,250 - 202,896,390 (36,141)
query : 207 - 3,542 (3,336/3,561)
12 exons
identity = 0.984
3'(0.998;1.000;1.000;1.000;0.995;1.000;1.000;
1.000;1.000;0.955;0.942;0.847)5'
coverage = 0.942
InterPro :
IPR006652 : Kelch repeat type 1
IPR011043 : Galactose oxidase/kelch, beta-propeller
IPR011705 : BTB/Kelch-associated
IPR015916 : Galactose oxidase, beta-propeller
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 15, cyto 9.5, pero 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001481)
HIX0001481
HIT000007686
(
AK024412
)
(Kelch-like protein 12; CUL3-interacting protein 1; DKIR homolog; hDKIR;)
genome : 202,860,244 - 202,878,289 (18,046)
query : 1 - 2,260 (2,260/2,260)
6 exons
identity = 0.998
3'(0.997;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR006652 : Kelch repeat type 1
IPR015916 : Galactose oxidase, beta-propeller
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, mito 4, cyto_nucl 3, mito_pero 3, nucl 2.5,
cyto 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001481)
HIX0001481
HIT000348539 (
ENST00000367259
)
(Kelch-like protein 12; CUL3-interacting protein 1; DKIR homolog; hDKIR;)
genome : 202,860,244 - 202,878,289 (18,046)
query : 1 - 2,257 (2,257/2,257)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, mito 4, cyto_nucl 3, mito_pero 3, nucl 2.5,
cyto 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001481)
HIX0001481
HIT000330852
(
AK223072
)
(Kelch-like protein 12; CUL3-interacting protein 1; DKIR homolog; hDKIR;)
genome : 202,861,223 - 202,896,337 (35,115)
query : 1 - 2,310 (2,310/2,310)
12 exons
identity = 0.997
3'(0.996;1.000;1.000;0.994;1.000;1.000;1.000;
0.987;0.995;0.994;1.000;0.992)5'
coverage = 1.000
InterPro :
IPR000210 : BTB/POZ-like
IPR006652 : Kelch repeat type 1
IPR011333 : BTB/POZ fold
IPR011705 : BTB/Kelch-associated
IPR013069 : BTB/POZ
IPR015916 : Galactose oxidase, beta-propeller
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 16.5, cyto 13.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001481)
HIX0001481
HIT000031497
(
BC003183
)
(Kelch-like protein 12; CUL3-interacting protein 1; DKIR homolog; hDKIR;)
genome : 202,861,509 - 202,896,352 (34,844)
query : 1 - 2,040 (2,040/2,058)
12 exons
identity = 1.000
3'(0.996;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000210 : BTB/POZ-like
IPR006652 : Kelch repeat type 1
IPR011333 : BTB/POZ fold
IPR011705 : BTB/Kelch-associated
IPR013069 : BTB/POZ
IPR015916 : Galactose oxidase, beta-propeller
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 16, cyto 12.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001481)
HIX0001481
HIT000031755
(
BC004175
)
(Kelch-like protein 12; CUL3-interacting protein 1; DKIR homolog; hDKIR;)
genome : 202,861,509 - 202,896,352 (34,844)
query : 1 - 2,040 (2,040/2,058)
12 exons
identity = 1.000
3'(0.996;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000210 : BTB/POZ-like
IPR006652 : Kelch repeat type 1
IPR011333 : BTB/POZ fold
IPR011705 : BTB/Kelch-associated
IPR013069 : BTB/POZ
IPR015916 : Galactose oxidase, beta-propeller
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 16, cyto 12.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001481)
HIX0001481
HIT000073252
(
AF190900
)
(Kelch-like protein 12; CUL3-interacting protein 1; DKIR homolog; hDKIR;)
genome : 202,861,508 - 202,896,324 (34,817)
query : 1 - 2,013 (2,013/2,013)
12 exons
identity = 1.000
3'(0.996;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000210 : BTB/POZ-like
IPR006652 : Kelch repeat type 1
IPR011333 : BTB/POZ fold
IPR011705 : BTB/Kelch-associated
IPR013069 : BTB/POZ
IPR015916 : Galactose oxidase, beta-propeller
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 16, cyto 12.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001481)
HIX0001481
HIT000076875
(
AF306687
)
(Kelch-like protein 12; CUL3-interacting protein 1; DKIR homolog; hDKIR;)
genome : 202,861,525 - 202,887,368 (25,844)
query : 1 - 1,159 (1,159/1,159)
8 exons
identity = 0.998
3'(0.992;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR006652 : Kelch repeat type 1
IPR015916 : Galactose oxidase, beta-propeller
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 18, nucl 15, cyto 15
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001481)
HIX0001481
HIT000496415
(
AK301791
)
Representative transcript
(Kelch-like protein 12; CUL3-interacting protein 1; DKIR homolog; hDKIR;)
genome : 202,861,533 - 202,897,727 (36,195)
query : 1 - 1,999 (1,999/1,999)
12 exons
identity = 0.999
3'(0.996;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000210 : BTB/POZ-like
IPR006652 : Kelch repeat type 1
IPR011043 : Galactose oxidase/kelch, beta-propeller
IPR011333 : BTB/POZ fold
IPR011705 : BTB/Kelch-associated
IPR013069 : BTB/POZ
IPR015916 : Galactose oxidase, beta-propeller
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, nucl 12, cysk 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001481)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK034170
Danio
sp. (Zebrafish) : BC085673
Rattus
sp. (Rat) : BC086983
Canis
sp. (Dog) : ENSCAFT00000016511
Monodelphis
sp. (Opossum) : ENSMODT00000001041
Oryzias
sp. (Medaka) : ENSORLT00000018815
Pongo
sp. (Orangutan) : ENSPPYT00000000397
Takifugu
sp. (Fugu) : SINFRUT00000178823
Equus
sp. (Horse) : XM_001495935
Gallus
sp. (Chicken) : XM_419251
Pan
sp. (Chimpanzee) : XM_514106
Macaca
sp. (Macaque) : XR_009956
HIX0001481
HIT000533467_01 (
ENST00000435533
)
(Kelch-like protein 12; CUL3-interacting protein 1; DKIR homolog; hDKIR;)
genome : 202,861,533 - 202,897,727 (36,195)
query : 1 - 1,999 (1,999/1,999)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, nucl 12, cysk 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001481)
HIX0001481
HIT000076877
(
AF306689
)
(Kelch-like protein 12; CUL3-interacting protein 1; DKIR homolog; hDKIR;)
genome : 202,862,402 - 202,896,369 (33,968)
query : 1 - 1,440 (1,440/1,440)
9 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.993)5'
coverage = 1.000
InterPro :
IPR000210 : BTB/POZ-like
IPR006652 : Kelch repeat type 1
IPR011333 : BTB/POZ fold
IPR011705 : BTB/Kelch-associated
IPR013069 : BTB/POZ
IPR015915 : Kelch-type beta propeller
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 15.5, nucl 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001481)
HIX0001481
HIT000348538 (
ENST00000367258
)
(Kelch-like protein 12; CUL3-interacting protein 1; DKIR homolog; hDKIR;)
genome : 202,878,138 - 202,897,764 (19,627)
query : 1 - 1,033 (1,033/1,033)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21, cyto_nucl 12.5, extr 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001481)
HIX0160771
HIT000528517 (
ENST00000430583
)
(RNA recognition motif domain containing protein.)
genome : 202,880,940 - 202,881,857 (918)
query : 1 - 918 (918/918)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0160771)
HIX0001482
HIT000035064
(
BC010743
)
Representative transcript
(Adiponectin receptor protein 1; Progestin and adipoQ receptor family member I;)
genome : 202,909,953 - 202,927,411 (17,459)
query : 1 - 2,069 (2,069/2,108)
8 exons
identity = 1.000
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR004254 : AdipoR/Haemolysin-III-related
GO :
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 26, E.R. 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001482)
HIX0001482
HIT000330283
(
AK222503
)
(Adiponectin receptor protein 1; Progestin and adipoQ receptor family member I;)
genome : 202,909,958 - 202,927,398 (17,441)
query : 1 - 2,052 (2,052/2,072)
8 exons
identity = 0.999
3'(0.997;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR004254 : AdipoR/Haemolysin-III-related
GO :
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 26, E.R. 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001482)
HIX0001482
HIT000726476 (
NR_046083
)
(AdipoR/Haemolysin-III-related family protein.)
genome : 202,909,962 - 202,927,700 (17,739)
query : 1 - 2,126 (2,126/2,143)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 26, E.R. 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001482)
HIX0001482
HIT000205778 (
NM_015999
)
(AdipoR/Haemolysin-III-related family protein.)
genome : 202,909,962 - 202,927,524 (17,563)
query : 1 - 2,173 (2,173/2,190)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 26, E.R. 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001482)
HIX0001482
HIT000030503
(
BC001594
)
(Adiponectin receptor protein 1; Progestin and adipoQ receptor family member I;)
genome : 202,909,962 - 202,927,417 (17,456)
query : 1 - 2,067 (2,067/2,084)
8 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR004254 : AdipoR/Haemolysin-III-related
GO :
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 26, E.R. 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001482)
HIX0001482
HIT000133620 (
ENST00000340990
)
(AdipoR/Haemolysin-III-related family protein.)
genome : 202,909,951 - 202,927,517 (17,567)
query : 1 - 2,177 (2,177/2,177)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 26, E.R. 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001482)
HIX0001482
HIT000044328
(
AK124455
)
(Adiponectin receptor protein 1.)
genome : 202,909,954 - 202,913,924 (3,971)
query : 1 - 2,108 (2,108/2,108)
3 exons
identity = 0.999
3'(0.998;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR004254 : AdipoR/Haemolysin-III-related
GO :
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 27, E.R. 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001482)
HIX0001482
HIT000598922 (
ENST00000495562
)
(AdipoR/Haemolysin-III-related family protein.)
genome : 202,909,954 - 202,913,924 (3,971)
query : 1 - 2,109 (2,109/2,109)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 27, E.R. 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001482)
HIX0001482
HIT000330063
(
AF125179
)
(Adiponectin receptor protein 1; Progestin and adipoQ receptor family member I;)
genome : 202,909,962 - 202,927,392 (17,431)
query : 7 - 2,041 (2,035/2,041)
8 exons
identity = 0.992
3'(0.995;0.995;1.000;0.995;1.000;1.000;0.991;
0.888)5'
coverage = 0.997
InterPro :
IPR004254 : AdipoR/Haemolysin-III-related
GO :
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 26, E.R. 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001482)
HIX0001482
HIT000534178 (
ENST00000436244
)
(AdipoR/Haemolysin-III-related family protein.)
genome : 202,909,963 - 202,927,700 (17,738)
query : 1 - 2,125 (2,125/2,125)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 26, E.R. 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001482)
HIX0001482
HIT000071616
(
AF151803
)
(Adiponectin receptor protein 1; Progestin and adipoQ receptor family member I;)
genome : 202,910,173 - 202,927,409 (17,237)
query : 1 - 1,839 (1,839/1,842)
8 exons
identity = 0.994
3'(0.997;1.000;1.000;1.000;1.000;1.000;1.000;
0.897)5'
coverage = 0.998
InterPro :
IPR004254 : AdipoR/Haemolysin-III-related
GO :
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 26, E.R. 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001482)
HIX0001482
HIT000003958
(
AK001484
)
(Adiponectin receptor protein 1; Progestin and adipoQ receptor family member I;)
genome : 202,910,174 - 202,927,440 (17,267)
query : 1 - 1,877 (1,877/1,877)
8 exons
identity = 0.999
3'(1.000;1.000;1.000;0.995;1.000;1.000;1.000;
0.992)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 26, E.R. 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001482)
HIX0001482
HIT000330064
(
AF125180
)
(Adiponectin receptor protein 1.)
genome : 202,910,618 - 202,927,392 (16,775)
query : 7 - 1,142 (1,136/1,142)
7 exons
identity = 0.962
3'(0.873;0.995;0.991;1.000;1.000;0.991;0.888)5'
coverage = 0.995
InterPro :
IPR004254 : AdipoR/Haemolysin-III-related
GO :
0016021 : Cellular Component : integral component of membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, cyto 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001482)
HIX0001482
HIT000014720
(
AK058114
)
(Adiponectin receptor protein 1; Progestin and adipoQ receptor family member I;)
genome : 202,910,632 - 202,927,440 (16,809)
query : 1 - 1,419 (1,419/1,419)
8 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;0.996;
1.000)5'
coverage = 1.000
InterPro :
IPR004254 : AdipoR/Haemolysin-III-related
GO :
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 26, E.R. 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001482)
HIX0001482
HIT000254533
(
AY424279
)
(Adiponectin receptor protein 1; Progestin and adipoQ receptor family member I;)
genome : 202,910,648 - 202,927,360 (16,713)
query : 1 - 1,323 (1,323/1,323)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR004254 : AdipoR/Haemolysin-III-related
GO :
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 26, E.R. 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001482)
HIX0001482
HIT000515002 (
ENST00000417068
)
(AdipoR/Haemolysin-III-related family protein.)
genome : 202,912,892 - 202,927,700 (14,809)
query : 1 - 1,058 (1,058/1,058)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 27, E.R. 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001482)
HIX0001482
HIT000348534 (
ENST00000367254
)
(AdipoR/Haemolysin-III-related family protein.)
genome : 202,912,906 - 202,927,417 (14,512)
query : 1 - 715 (715/715)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, cyto 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001482)
HIX0001482
HIT000524163 (
ENST00000426229
)
(AdipoR/Haemolysin-III-related family protein.)
genome : 202,914,111 - 202,927,413 (13,303)
query : 1 - 879 (879/879)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 24, mito 3, E.R. 3, E.R._mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001482)
HIX0001483
HIT000068305
(
AF091084
)
(NADH-cytochrome b5 reductase 1.)
genome : 202,931,003 - 202,933,785 (2,783)
query : 10 - 1,066 (1,057/1,170)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 0.999
EC number :
EC 1.6.2.2
KEGG pathway :
00520 : Amino sugar and nucleotide sugar metabolism (92)
InterPro :
IPR001433 : Oxidoreductase FAD/NAD(P)-binding
IPR001709 : Flavoprotein pyridine nucleotide cytochrome reductase
IPR001834 : NADH:cytochrome b5 reductase (CBR)
GO :
0016491 : Molecular Function : oxidoreductase activity
0055114 : Biological Process : oxidation-reduction process
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23.5, cyto_nucl 16.5, nucl 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001483)
HIX0001483
HIT000253070
(
AY359026
)
Representative transcript
(NADH-cytochrome b5 reductase 1; b5R.1; EC=1.6.2.2; Humb5R2; NAD(P)H:quinone oxidoreductase type 3 polypeptide A2;)
genome : 202,931,003 - 202,936,408 (5,406)
query : 1 - 1,644 (1,644/1,687)
9 exons
identity = 0.998
3'(0.995;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
EC number :
EC 1.6.2.2
KEGG pathway :
00520 : Amino sugar and nucleotide sugar metabolism (92)
InterPro :
IPR001433 : Oxidoreductase FAD/NAD(P)-binding
IPR001709 : Flavoprotein pyridine nucleotide cytochrome reductase
IPR001834 : NADH:cytochrome b5 reductase (CBR)
IPR008333 : Oxidoreductase, FAD-binding domain
IPR017927 : Ferredoxin reductase-type FAD-binding domain
IPR017938 : Riboflavin synthase-like beta-barrel
GO :
0016491 : Molecular Function : oxidoreductase activity
0055114 : Biological Process : oxidation-reduction process
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 19, mito 4, E.R. 4, pero 4, E.R._mito 4,
mito_pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001483)
Ortholog candidate ( ->
Evola
)
Danio
sp. (Zebrafish) : AY398332
Mus
sp. (Mouse) : BC016266
Rattus
sp. (Rat) : BC089945
Bos
sp. (Cow) : BC104584
Monodelphis
sp. (Opossum) : ENSMODT00000001086
Pongo
sp. (Orangutan) : ENSPPYT00000000395
Takifugu
sp. (Fugu) : SINFRUT00000132988
Macaca
sp. (Macaque) : XM_001105252
Pan
sp. (Chimpanzee) : XM_001171043
Equus
sp. (Horse) : XM_001495674
Canis
sp. (Dog) : XM_843218
HIX0001483
HIT000205986 (
NM_016243
)
(NADH-cytochrome b5 reductase 1; b5R.1; EC=1.6.2.2; Humb5R2; NAD(P)H:quinone oxidoreductase type 3 polypeptide A2;)
genome : 202,931,003 - 202,936,404 (5,402)
query : 1 - 1,641 (1,641/1,675)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
EC number :
EC 1.6.2.2
KEGG pathway :
00520 : Amino sugar and nucleotide sugar metabolism (92)
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 19, mito 4, E.R. 4, pero 4, E.R._mito 4,
mito_pero 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001483)
HIX0001483
HIT000242655
(
AF087912
)
(NADH-cytochrome b5 reductase 1; b5R.1; EC=1.6.2.2; Humb5R2; NAD(P)H:quinone oxidoreductase type 3 polypeptide A2;)
genome : 202,931,001 - 202,936,371 (5,371)
query : 1 - 1,609 (1,609/1,633)
9 exons
identity = 0.998
3'(0.996;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 0.985
EC number :
EC 1.6.2.2
KEGG pathway :
00520 : Amino sugar and nucleotide sugar metabolism (92)
InterPro :
IPR001433 : Oxidoreductase FAD/NAD(P)-binding
IPR001709 : Flavoprotein pyridine nucleotide cytochrome reductase
IPR001834 : NADH:cytochrome b5 reductase (CBR)
IPR008333 : Oxidoreductase, FAD-binding domain
IPR017927 : Ferredoxin reductase-type FAD-binding domain
IPR017938 : Riboflavin synthase-like beta-barrel
GO :
0016491 : Molecular Function : oxidoreductase activity
0055114 : Biological Process : oxidation-reduction process
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 19, mito 4, E.R. 4, pero 4, E.R._mito 4,
mito_pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001483)
HIX0001483
HIT000085774
(
BC000034
)
(NADH-cytochrome b5 reductase 1; b5R.1; EC=1.6.2.2; Humb5R2; NAD(P)H:quinone oxidoreductase type 3 polypeptide A2;)
genome : 202,931,003 - 202,936,371 (5,369)
query : 1 - 1,606 (1,606/1,625)
9 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;0.985;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
EC number :
EC 1.6.2.2
KEGG pathway :
00520 : Amino sugar and nucleotide sugar metabolism (92)
InterPro :
IPR001433 : Oxidoreductase FAD/NAD(P)-binding
IPR001709 : Flavoprotein pyridine nucleotide cytochrome reductase
IPR001834 : NADH:cytochrome b5 reductase (CBR)
IPR008333 : Oxidoreductase, FAD-binding domain
IPR017927 : Ferredoxin reductase-type FAD-binding domain
IPR017938 : Riboflavin synthase-like beta-barrel
GO :
0016491 : Molecular Function : oxidoreductase activity
0055114 : Biological Process : oxidation-reduction process
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 19, mito 4, E.R. 4, pero 4, E.R._mito 4,
mito_pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001483)
HIX0001483
HIT000331196
(
AK223416
)
(NADH-cytochrome b5 reductase 1; b5R.1; EC=1.6.2.2; Humb5R2; NAD(P)H:quinone oxidoreductase type 3 polypeptide A2;)
genome : 202,931,003 - 202,936,385 (5,383)
query : 1 - 1,622 (1,622/1,640)
9 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;0.991;1.000;
1.000;1.000)5'
coverage = 1.000
EC number :
EC 1.6.2.2
KEGG pathway :
00520 : Amino sugar and nucleotide sugar metabolism (92)
InterPro :
IPR001433 : Oxidoreductase FAD/NAD(P)-binding
IPR001709 : Flavoprotein pyridine nucleotide cytochrome reductase
IPR001834 : NADH:cytochrome b5 reductase (CBR)
IPR008333 : Oxidoreductase, FAD-binding domain
IPR017927 : Ferredoxin reductase-type FAD-binding domain
IPR017938 : Riboflavin synthase-like beta-barrel
GO :
0016491 : Molecular Function : oxidoreductase activity
0055114 : Biological Process : oxidation-reduction process
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 19, mito 4, E.R. 4, pero 4, E.R._mito 4,
mito_pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001483)
HIX0001483
HIT000038427
(
BC018732
)
(NADH-cytochrome b5 reductase 1; b5R.1; EC=1.6.2.2; Humb5R2; NAD(P)H:quinone oxidoreductase type 3 polypeptide A2;)
genome : 202,931,003 - 202,936,361 (5,359)
query : 1 - 1,598 (1,598/1,615)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
EC number :
EC 1.6.2.2
KEGG pathway :
00520 : Amino sugar and nucleotide sugar metabolism (92)
InterPro :
IPR001433 : Oxidoreductase FAD/NAD(P)-binding
IPR001709 : Flavoprotein pyridine nucleotide cytochrome reductase
IPR001834 : NADH:cytochrome b5 reductase (CBR)
IPR008333 : Oxidoreductase, FAD-binding domain
IPR017927 : Ferredoxin reductase-type FAD-binding domain
IPR017938 : Riboflavin synthase-like beta-barrel
GO :
0016491 : Molecular Function : oxidoreductase activity
0055114 : Biological Process : oxidation-reduction process
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 19, mito 4, E.R. 4, pero 4, E.R._mito 4,
mito_pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001483)
HIX0001483
HIT000001945
(
AF125533
)
(NADH-cytochrome b5 reductase 1; b5R.1; EC=1.6.2.2; Humb5R2; NAD(P)H:quinone oxidoreductase type 3 polypeptide A2;)
genome : 202,931,003 - 202,936,371 (5,369)
query : 1 - 1,606 (1,606/1,617)
9 exons
identity = 0.998
3'(0.996;1.000;1.000;1.000;1.000;1.000;0.986;
1.000;1.000)5'
coverage = 1.000
EC number :
EC 1.6.2.2
KEGG pathway :
00520 : Amino sugar and nucleotide sugar metabolism (92)
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 19, mito 4, E.R. 4, pero 4, E.R._mito 4,
mito_pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001483)
HIX0001483
HIT000072345
(
AF169481
)
(NADH-cytochrome b5 reductase 1; b5R.1; EC=1.6.2.2; Humb5R2; NAD(P)H:quinone oxidoreductase type 3 polypeptide A2;)
genome : 202,931,001 - 202,936,359 (5,359)
query : 1 - 1,598 (1,598/1,603)
9 exons
identity = 0.994
3'(0.994;1.000;1.000;1.000;0.992;0.991;1.000;
1.000;0.951)5'
coverage = 0.997
EC number :
EC 1.6.2.2
KEGG pathway :
00520 : Amino sugar and nucleotide sugar metabolism (92)
InterPro :
IPR001433 : Oxidoreductase FAD/NAD(P)-binding
IPR001709 : Flavoprotein pyridine nucleotide cytochrome reductase
IPR001834 : NADH:cytochrome b5 reductase (CBR)
IPR008333 : Oxidoreductase, FAD-binding domain
IPR017927 : Ferredoxin reductase-type FAD-binding domain
IPR017938 : Riboflavin synthase-like beta-barrel
GO :
0016491 : Molecular Function : oxidoreductase activity
0055114 : Biological Process : oxidation-reduction process
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 18, mito 5, E.R. 4, pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001483)
HIX0001483
HIT000348529 (
ENST00000367249
)
(NADH-cytochrome b5 reductase 1; b5R.1; EC=1.6.2.2; Humb5R2; NAD(P)H:quinone oxidoreductase type 3 polypeptide A2;)
genome : 202,930,997 - 202,936,408 (5,412)
query : 1 - 1,651 (1,651/1,651)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
EC number :
EC 1.6.2.2
KEGG pathway :
00520 : Amino sugar and nucleotide sugar metabolism (92)
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 19, mito 4, E.R. 4, pero 4, E.R._mito 4,
mito_pero 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001483)
HIX0001483
HIT000081689
(
AK074654
)
(NADH-cytochrome b5 reductase 1; b5R.1; EC=1.6.2.2; Humb5R2; NAD(P)H:quinone oxidoreductase type 3 polypeptide A2;)
genome : 202,931,004 - 202,936,385 (5,382)
query : 1 - 1,621 (1,621/1,621)
9 exons
identity = 0.999
3'(0.999;1.000;0.988;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
EC number :
EC 1.6.2.2
KEGG pathway :
00520 : Amino sugar and nucleotide sugar metabolism (92)
InterPro :
IPR001433 : Oxidoreductase FAD/NAD(P)-binding
IPR001709 : Flavoprotein pyridine nucleotide cytochrome reductase
IPR001834 : NADH:cytochrome b5 reductase (CBR)
IPR008333 : Oxidoreductase, FAD-binding domain
IPR017927 : Ferredoxin reductase-type FAD-binding domain
IPR017938 : Riboflavin synthase-like beta-barrel
GO :
0016491 : Molecular Function : oxidoreductase activity
0055114 : Biological Process : oxidation-reduction process
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 19, mito 4, E.R. 4, pero 4, E.R._mito 4,
mito_pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001483)
HIX0001483
HIT000082339
(
AK075304
)
(NADH-cytochrome b5 reductase 1; b5R.1; EC=1.6.2.2; Humb5R2; NAD(P)H:quinone oxidoreductase type 3 polypeptide A2;)
genome : 202,931,004 - 202,936,353 (5,350)
query : 1 - 1,590 (1,590/1,590)
9 exons
identity = 0.998
3'(0.998;1.000;1.000;0.988;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
EC number :
EC 1.6.2.2
KEGG pathway :
00520 : Amino sugar and nucleotide sugar metabolism (92)
InterPro :
IPR001433 : Oxidoreductase FAD/NAD(P)-binding
IPR001709 : Flavoprotein pyridine nucleotide cytochrome reductase
IPR001834 : NADH:cytochrome b5 reductase (CBR)
IPR008333 : Oxidoreductase, FAD-binding domain
IPR017927 : Ferredoxin reductase-type FAD-binding domain
IPR017938 : Riboflavin synthase-like beta-barrel
GO :
0016491 : Molecular Function : oxidoreductase activity
0055114 : Biological Process : oxidation-reduction process
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 19, mito 4, E.R. 4, pero 4, E.R._mito 4,
mito_pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001483)
HIX0001483
HIT000043578
(
AK123705
)
(NADH-cytochrome b5 reductase 1.)
genome : 202,931,004 - 202,934,512 (3,509)
query : 1 - 3,033 (3,033/3,033)
2 exons
identity = 0.998
3'(0.998;0.998)5'
coverage = 1.000
EC number :
EC 1.6.2.2
KEGG pathway :
00520 : Amino sugar and nucleotide sugar metabolism (92)
InterPro :
IPR001433 : Oxidoreductase FAD/NAD(P)-binding
GO :
0016491 : Molecular Function : oxidoreductase activity
0055114 : Biological Process : oxidation-reduction process
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 23, extr 5, cyto 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001483)
HIX0001483
HIT000600918 (
ENST00000497655
)
(NADH-cytochrome b5 reductase 1.)
genome : 202,931,004 - 202,934,512 (3,509)
query : 1 - 3,033 (3,033/3,033)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
EC number :
EC 1.6.2.2
KEGG pathway :
00520 : Amino sugar and nucleotide sugar metabolism (92)
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 23, extr 5, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001483)
HIX0001483
HIT000242663
(
AF093822
)
(NADH-cytochrome b5 reductase 1; b5R.1; EC=1.6.2.2; Humb5R2; NAD(P)H:quinone oxidoreductase type 3 polypeptide A2;)
genome : 202,931,382 - 202,936,371 (4,990)
query : 1 - 1,262 (1,262/1,265)
9 exons
identity = 0.971
3'(0.927;1.000;1.000;1.000;1.000;0.991;1.000;
1.000;1.000)5'
coverage = 0.998
EC number :
EC 1.6.2.2
KEGG pathway :
00520 : Amino sugar and nucleotide sugar metabolism (92)
InterPro :
IPR001433 : Oxidoreductase FAD/NAD(P)-binding
IPR001709 : Flavoprotein pyridine nucleotide cytochrome reductase
IPR001834 : NADH:cytochrome b5 reductase (CBR)
IPR008333 : Oxidoreductase, FAD-binding domain
IPR017927 : Ferredoxin reductase-type FAD-binding domain
IPR017938 : Riboflavin synthase-like beta-barrel
GO :
0016491 : Molecular Function : oxidoreductase activity
0055114 : Biological Process : oxidation-reduction process
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 19, mito 4, E.R. 4, pero 4, E.R._mito 4,
mito_pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001483)
HIX0001483
HIT000389561
(
BC127945
)
(NADH-cytochrome b5 reductase 1.)
genome : 202,931,424 - 202,935,107 (3,684)
query : 11 - 907 (897/910)
6 exons
identity = 0.998
3'(0.995;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.986
EC number :
EC 1.6.2.2
KEGG pathway :
00520 : Amino sugar and nucleotide sugar metabolism (92)
InterPro :
IPR001433 : Oxidoreductase FAD/NAD(P)-binding
IPR001709 : Flavoprotein pyridine nucleotide cytochrome reductase
IPR001834 : NADH:cytochrome b5 reductase (CBR)
IPR008333 : Oxidoreductase, FAD-binding domain
IPR017927 : Ferredoxin reductase-type FAD-binding domain
IPR017938 : Riboflavin synthase-like beta-barrel
GO :
0016491 : Molecular Function : oxidoreductase activity
0055114 : Biological Process : oxidation-reduction process
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 22.5, cyto_nucl 14.5, nucl 3.5, mito 2, pero 2,
mito_pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001483)
HIX0001483
HIT000432199
(
AK313333
)
(NADH-cytochrome b5 reductase 1; b5R.1; EC=1.6.2.2; Humb5R2; NAD(P)H:quinone oxidoreductase type 3 polypeptide A2;)
genome : 202,931,655 - 202,936,383 (4,729)
query : 1 - 968 (968/968)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
EC number :
EC 1.6.2.2
KEGG pathway :
00520 : Amino sugar and nucleotide sugar metabolism (92)
InterPro :
IPR001433 : Oxidoreductase FAD/NAD(P)-binding
IPR001709 : Flavoprotein pyridine nucleotide cytochrome reductase
IPR001834 : NADH:cytochrome b5 reductase (CBR)
IPR008333 : Oxidoreductase, FAD-binding domain
IPR017927 : Ferredoxin reductase-type FAD-binding domain
IPR017938 : Riboflavin synthase-like beta-barrel
GO :
0016491 : Molecular Function : oxidoreductase activity
0055114 : Biological Process : oxidation-reduction process
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 19, mito 4, E.R. 4, pero 4, E.R._mito 4,
mito_pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001483)
HIX0001483
HIT000586497 (
ENST00000482572
)
(NADH-cytochrome b5 reductase 3; B5R; Cytochrome b5 reductase; EC=1.6.2.2; Diaphorase-1; Contains: NADH-cytochrome b5 reductase 3 membrane-bound form; Contains: NADH-cytochrome b5 reductase 3 soluble form;)
genome : 202,931,675 - 202,936,371 (4,697)
query : 1 - 863 (863/863)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
EC number :
EC 1.6.2.2
KEGG pathway :
00520 : Amino sugar and nucleotide sugar metabolism (92)
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001483)
HIX0001483
HIT000587784 (
ENST00000483915
)
(NADH-cytochrome b5 reductase 1.)
genome : 202,931,678 - 202,932,687 (1,010)
query : 1 - 644 (644/644)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
EC number :
EC 1.6.2.2
KEGG pathway :
00520 : Amino sugar and nucleotide sugar metabolism (92)
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, cyto_nucl 13.5, extr 7, nucl 6.5, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001483)
HIX0001483
HIT000544119 (
ENST00000446185
)
(NADH-cytochrome b5 reductase 1.)
genome : 202,932,054 - 202,935,688 (3,635)
query : 1 - 680 (680/680)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 1.6.2.2
KEGG pathway :
00520 : Amino sugar and nucleotide sugar metabolism (92)
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 27, mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001483)
HIX0001483
HIT000490526
(
AK295902
)
(NADH-cytochrome b5 reductase 1.)
genome : 202,932,262 - 202,936,383 (4,122)
query : 39 - 881 (843/881)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 0.957
EC number :
EC 1.6.2.2
KEGG pathway :
00520 : Amino sugar and nucleotide sugar metabolism (92)
InterPro :
IPR001433 : Oxidoreductase FAD/NAD(P)-binding
IPR001709 : Flavoprotein pyridine nucleotide cytochrome reductase
IPR001834 : NADH:cytochrome b5 reductase (CBR)
IPR008333 : Oxidoreductase, FAD-binding domain
IPR017927 : Ferredoxin reductase-type FAD-binding domain
IPR017938 : Riboflavin synthase-like beta-barrel
GO :
0016491 : Molecular Function : oxidoreductase activity
0055114 : Biological Process : oxidation-reduction process
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18, cyto 11
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001483)
HIX0001483
HIT000577922 (
ENST00000473599
)
(NADH-cytochrome b5 reductase 1.)
genome : 202,934,499 - 202,936,403 (1,905)
query : 1 - 661 (661/661)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 1.6.2.2
KEGG pathway :
00520 : Amino sugar and nucleotide sugar metabolism (92)
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 27, cyto_nucl 2, nucl 1.5, cyto 1.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001483)
HIX0001483
HIT000010591
(
AK027319
)
(Conserved hypothetical protein.)
genome : 202,934,778 - 202,936,383 (1,606)
query : 1 - 1,605 (1,605/1,605)
1 exon
identity = 0.997
3'(0.997)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14.5, cyto_mito 11.6667, cyto 7.5,
cyto_pero 5.33333, nucl 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001483)
HIX0001483
HIT000582131 (
ENST00000478009
)
(NADH-cytochrome b5 reductase 1.)
genome : 202,935,015 - 202,936,353 (1,339)
query : 1 - 899 (899/899)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 1.6.2.2
KEGG pathway :
00520 : Amino sugar and nucleotide sugar metabolism (92)
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 28, mito 2, pero 2, mito_pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001483)
HIX0159805
HIT000659648 (
NR_036557
)
(Glycosyl transferase family 54 protein.)
genome : 202,955,580 - 202,976,393 (20,814)
query : 1 - 1,873 (1,873/1,873)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 9, nucl 6, plas 5, pero 4.5, extr_plas 4.5,
cyto_golg 4.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159805)
HIX0159805
HIT000536073 (
ENST00000438139
)
(Glycosyl transferase family 54 protein.)
genome : 202,955,685 - 202,957,710 (2,026)
query : 1 - 1,239 (1,239/1,239)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 9, nucl 6, plas 5, pero 4.5, extr_plas 4.5,
cyto_golg 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159805)
HIX0159805
HIT000515663 (
ENST00000417729
)
(Glycosyl transferase family 54 protein.)
genome : 202,956,405 - 202,957,610 (1,206)
query : 1 - 419 (419/419)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, nucl 8.5, cyto_nucl 5.5, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159805)
HIX0160679
HIT000525329 (
ENST00000427395
)
(Ribosomal protein S10 domain containing protein.)
genome : 202,969,172 - 202,969,480 (309)
query : 3 - 310 (308/310)
1 exon
identity = 0.987
5'(0.987)3'
coverage = 0.994
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, cyto_nucl 7, cyto 6, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0160679)
HIX0001484
HIT000052092
(
BC038952
)
(Transmembrane protein 183B;)
genome : 202,976,536 - 202,992,668 (16,133)
query : 55 - 1,743 (1,689/1,872)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 0.969
InterPro :
IPR001810 : F-box domain
IPR026509 : Transmembrane protein 183
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12, cyto_nucl 11.5, cyto 7, mito 4.5,
mito_pero 4, plas 3, E.R. 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001484)
HIX0001484
HIT000491846
(
AK297222
)
(Transmembrane protein 183A.)
genome : 202,976,501 - 202,992,432 (15,932)
query : 1 - 1,373 (1,373/1,373)
8 exons
identity = 0.999
5'(0.989;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
InterPro :
IPR001810 : F-box domain
IPR026509 : Transmembrane protein 183
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
plas 25, cyto 3, extr 1, nucl 1, mito 1, golg 1,
mito_nucl 1
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001484)
HIX0001484
HIT000348522 (
ENST00000367242
)
(Transmembrane protein 183B;)
genome : 202,976,514 - 202,993,976 (17,463)
query : 1 - 3,019 (3,019/3,019)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12, cyto_nucl 11.5, cyto 7, mito 4.5,
mito_pero 4, plas 3, E.R. 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001484)
HIX0001484
HIT000065704
(
AF070537
)
(Transmembrane protein 183B;)
genome : 202,976,514 - 202,992,368 (15,855)
query : 1 - 1,408 (1,408/1,428)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
InterPro :
IPR001810 : F-box domain
IPR026509 : Transmembrane protein 183
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12, cyto_nucl 11.5, cyto 7, mito 4.5,
mito_pero 4, plas 3, E.R. 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001484)
HIX0001484
HIT000424223
(
AK291426
)
(Transmembrane protein 183B;)
genome : 202,976,520 - 202,992,623 (16,104)
query : 1 - 1,660 (1,660/1,660)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
InterPro :
IPR001810 : F-box domain
IPR026509 : Transmembrane protein 183
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12, cyto_nucl 11.5, cyto 7, mito 4.5,
mito_pero 4, plas 3, E.R. 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001484)
HIX0001484
HIT000431851
(
AK312985
)
(Transmembrane protein 183B;)
genome : 202,976,520 - 202,992,168 (15,649)
query : 1 - 1,205 (1,205/1,205)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
InterPro :
IPR001810 : F-box domain
IPR026509 : Transmembrane protein 183
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12, cyto_nucl 11.5, cyto 7, mito 4.5,
mito_pero 4, plas 3, E.R. 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001484)
HIX0001484
HIT000428611
(
AK309745
)
(Transmembrane protein 183A.)
genome : 202,976,523 - 202,985,383 (8,861)
query : 1 - 894 (894/894)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001810 : F-box domain
IPR026509 : Transmembrane protein 183
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24.5, cyto_nucl 17.5, cyto 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001484)
HIX0001484
HIT000262743
(
BC067775
)
(Transmembrane protein 183A.)
genome : 202,976,524 - 202,992,508 (15,985)
query : 1 - 1,705 (1,705/1,719)
9 exons
identity = 0.998
5'(0.994;0.989;1.000;1.000;1.000;1.000;1.000;
1.000;0.998)3'
coverage = 1.000
InterPro :
IPR001810 : F-box domain
IPR026509 : Transmembrane protein 183
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19.5, cyto_nucl 14, cyto 7.5, mito 2, golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001484)
HIX0001484
HIT000642936 (
ENST00000543891
)
(Transmembrane protein 183A.)
genome : 202,976,531 - 202,985,222 (8,692)
query : 1 - 924 (924/924)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19.5, cyto_nucl 16.5, cyto 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001484)
HIX0001484
HIT000212365 (
NM_138391
)
(Transmembrane protein 183B;)
genome : 202,976,534 - 202,993,197 (16,664)
query : 1 - 2,220 (2,220/2,220)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12, cyto_nucl 11.5, cyto 7, mito 4.5,
mito_pero 4, plas 3, E.R. 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001484)
HIX0001484
HIT000036111
(
BC013073
)
Representative transcript
(Transmembrane protein 183B;)
genome : 202,976,534 - 202,992,668 (16,135)
query : 1 - 1,691 (1,691/1,759)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
InterPro :
IPR001810 : F-box domain
IPR026509 : Transmembrane protein 183
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12, cyto_nucl 11.5, cyto 7, mito 4.5,
mito_pero 4, plas 3, E.R. 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001484)
Ortholog candidate ( ->
Evola
)
Gallus
sp. (Chicken) : AJ851820
Mus
sp. (Mouse) : AK004922
Rattus
sp. (Rat) : BC079375
Danio
sp. (Zebrafish) : BC091869
Pongo
sp. (Orangutan) : CR859818
Equus
sp. (Horse) : ENSECAT00000008973
Macaca
sp. (Macaque) : ENSMMUT00000045076
Monodelphis
sp. (Opossum) : ENSMODT00000037379
Oryzias
sp. (Medaka) : ENSORLT00000019888
Takifugu
sp. (Fugu) : SINFRUT00000128614
Pan
sp. (Chimpanzee) : XM_514108
Canis
sp. (Dog) : XM_537117
HIX0001484
HIT000503341
(
BC150647
)
(Transmembrane protein 183B;)
genome : 202,976,552 - 202,992,246 (15,695)
query : 1 - 1,251 (1,251/1,251)
8 exons
identity = 0.999
5'(0.993;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
InterPro :
IPR001810 : F-box domain
IPR026509 : Transmembrane protein 183
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12, cyto_nucl 11.5, cyto 7, mito 4.5,
mito_pero 4, plas 3, E.R. 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001484)
HIX0001484
HIT000567931_01 (
ENST00000463122
)
(Transmembrane protein 183B;)
genome : 202,976,594 - 202,992,165 (15,572)
query : 1 - 1,128 (1,128/1,128)
8 exons
identity = 0.995
5'(1.000;0.967;0.988;1.000;0.994;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12, cyto_nucl 11.5, cyto 7, mito 4.5,
mito_pero 4, plas 3, E.R. 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001484)
HIX0001484
HIT000573016 (
ENST00000468449
)
(Transmembrane protein 183A.)
genome : 202,976,902 - 202,987,047 (10,146)
query : 1 - 763 (763/763)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 11, cyto_nucl 7.5, nucl 7, mito 7, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001484)
HIX0001484
HIT000567826 (
ENST00000463015
)
(Transmembrane protein 183A.)
genome : 202,977,868 - 202,984,700 (6,833)
query : 1 - 755 (755/755)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 10, plas 7.5, cyto_nucl 7.5, extr_plas 5.5,
cyto_golg 5.5, nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001484)
HIX0001484
HIT000591760 (
ENST00000488097
)
(Transmembrane protein 183A.)
genome : 202,984,968 - 202,992,089 (7,122)
query : 1 - 758 (758/758)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto_nucl 9.66667, nucl 7.5, cyto 6.5,
extr_plas 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001484)
HIX0001484
HIT000024955
(
AL133052
)
(Conserved hypothetical protein.)
genome : 202,992,488 - 202,993,976 (1,489)
query : 1 - 1,490 (1,490/1,522)
1 exon
identity = 0.997
5'(0.997)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, cyto_nucl 10.3333, cyto_plas 9.83333, mito 6,
extr 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001484)
HIX0001485
HIT000348520 (
ENST00000367240
)
(Liprin-alpha-4; Protein tyrosine phosphatase receptor type f polypeptide-interacting protein alpha-4; PTPRF-interacting protein alpha-4;)
genome : 202,995,626 - 203,047,864 (52,239)
query : 1 - 6,434 (6,434/6,434)
29 exons
identity = 0.999
5'(0.985;0.994;1.000;1.000;1.000;1.000;1.000;
1.000;0.986;0.987;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25.5, cyto_nucl 17, cyto 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001485)
HIX0001485
HIT000468800
(
EF428334
)
(Liprin-alpha-4.)
genome : 203,003,612 - 203,047,864 (44,253)
query : 1 - 6,345 (6,345/6,355)
35 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.986;0.987;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR001660 : Sterile alpha motif domain
IPR011510 : Sterile alpha motif, type 2
IPR013761 : Sterile alpha motif/pointed domain
IPR021129 : Sterile alpha motif, type 1
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24, cyto_nucl 17, cyto 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001485)
HIX0001485
HIT000545649 (
ENST00000447715
)
(Liprin-alpha-4.)
genome : 203,003,612 - 203,047,868 (44,257)
query : 1 - 6,349 (6,349/6,349)
35 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.986;0.987;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24, cyto_nucl 17, cyto 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001485)
HIX0001485
HIT000114249 (
ENST00000295706
)
(Liprin-alpha-4; Protein tyrosine phosphatase receptor type f polypeptide-interacting protein alpha-4; PTPRF-interacting protein alpha-4;)
genome : 203,003,612 - 203,047,863 (44,252)
query : 1 - 6,395 (6,395/6,395)
33 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.986;0.987;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24, cyto_nucl 17, cyto 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001485)
HIX0001485
HIT000713346 (
ENST00000601609
)
(Liprin-alpha-4; Protein tyrosine phosphatase receptor type f polypeptide-interacting protein alpha-4; PTPRF-interacting protein alpha-4; Fragment;)
genome : 203,014,537 - 203,015,635 (1,099)
query : 1 - 558 (558/558)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 24, nucl 4, mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001485)
HIX0001485
HIT000490381
(
AK295757
)
(Liprin-alpha-4; Protein tyrosine phosphatase receptor type f polypeptide-interacting protein alpha-4; PTPRF-interacting protein alpha-4;)
genome : 203,014,594 - 203,045,625 (31,032)
query : 1 - 2,967 (2,967/2,967)
24 exons
identity = 0.998
5'(1.000;1.000;0.986;0.987;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.989;
1.000;1.000;1.000;1.000;1.000;0.990;1.000;
1.000;1.000;0.994)3'
coverage = 1.000
InterPro :
IPR001660 : Sterile alpha motif domain
IPR011510 : Sterile alpha motif, type 2
IPR013761 : Sterile alpha motif/pointed domain
IPR021129 : Sterile alpha motif, type 1
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24.5, cyto_nucl 18, cyto 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001485)
HIX0001485
HIT000511984 (
ENST00000414050
)
(Liprin-alpha-4; Protein tyrosine phosphatase receptor type f polypeptide-interacting protein alpha-4; PTPRF-interacting protein alpha-4;)
genome : 203,014,594 - 203,045,625 (31,032)
query : 1 - 2,967 (2,967/2,967)
24 exons
identity = 0.999
5'(1.000;1.000;0.986;0.987;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24.5, cyto_nucl 18, cyto 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001485)
HIX0001485
HIT000712170 (
ENST00000600426
)
(Liprin-alpha-4; Protein tyrosine phosphatase receptor type f polypeptide-interacting protein alpha-4; PTPRF-interacting protein alpha-4;)
genome : 203,014,594 - 203,045,625 (31,032)
query : 1 - 2,967 (2,967/2,967)
24 exons
identity = 0.999
5'(1.000;1.000;0.986;0.987;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24.5, cyto_nucl 18, cyto 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001485)
HIX0001485
HIT000046497
(
AK126624
)
Representative transcript
(Liprin-alpha-4; Protein tyrosine phosphatase receptor type f polypeptide-interacting protein alpha-4; PTPRF-interacting protein alpha-4;)
genome : 203,020,311 - 203,047,863 (27,553)
query : 2 - 5,046 (5,045/5,046)
17 exons
identity = 0.999
5'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR001660 : Sterile alpha motif domain
IPR011510 : Sterile alpha motif, type 2
IPR013761 : Sterile alpha motif/pointed domain
IPR021129 : Sterile alpha motif, type 1
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto_nucl 17, cyto 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001485)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB172168
Mus
sp. (Mouse) : AK173053
Rattus
sp. (Rat) : AY057064
Danio
sp. (Zebrafish) : BC146726
Gallus
sp. (Chicken) : CR385190
Equus
sp. (Horse) : ENSECAT00000018122
Monodelphis
sp. (Opossum) : ENSMODT00000001215
Oryzias
sp. (Medaka) : ENSORLT00000019910
Pongo
sp. (Orangutan) : ENSPPYT00000000392
Tetraodon
sp. (Tetraodon) : GSTENT00021533001
Takifugu
sp. (Fugu) : SINFRUT00000180039
Canis
sp. (Dog) : XM_843291
Pan
sp. (Chimpanzee) : XR_020391
HIX0001485
HIT000317187 (
NM_015053
)
(Liprin-alpha-4; Protein tyrosine phosphatase receptor type f polypeptide-interacting protein alpha-4; PTPRF-interacting protein alpha-4;)
genome : 203,020,311 - 203,047,864 (27,554)
query : 1 - 5,045 (5,045/5,055)
17 exons
identity = 0.999
5'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto_nucl 17, cyto 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001485)
HIX0001485
HIT000110850 (
ENST00000272198
)
(Liprin-alpha-4; Protein tyrosine phosphatase receptor type f polypeptide-interacting protein alpha-4; PTPRF-interacting protein alpha-4;)
genome : 203,020,311 - 203,047,864 (27,554)
query : 1 - 5,045 (5,045/5,045)
17 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto_nucl 17, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001485)
HIX0001485
HIT000390974
(
BC132923
)
(Liprin-alpha-4; Protein tyrosine phosphatase receptor type f polypeptide-interacting protein alpha-4; PTPRF-interacting protein alpha-4;)
genome : 203,020,368 - 203,046,081 (25,714)
query : 1 - 3,205 (3,205/3,205)
17 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001660 : Sterile alpha motif domain
IPR011510 : Sterile alpha motif, type 2
IPR013761 : Sterile alpha motif/pointed domain
IPR021129 : Sterile alpha motif, type 1
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto_nucl 17, cyto 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001485)
HIX0001485
HIT000390976
(
BC132925
)
(Liprin-alpha-4; Protein tyrosine phosphatase receptor type f polypeptide-interacting protein alpha-4; PTPRF-interacting protein alpha-4;)
genome : 203,020,368 - 203,046,081 (25,714)
query : 1 - 3,205 (3,205/3,205)
17 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001660 : Sterile alpha motif domain
IPR011510 : Sterile alpha motif, type 2
IPR013761 : Sterile alpha motif/pointed domain
IPR021129 : Sterile alpha motif, type 1
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto_nucl 17, cyto 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001485)
HIX0001485
HIT000502688
(
BC144262
)
(Liprin-alpha-4; Protein tyrosine phosphatase receptor type f polypeptide-interacting protein alpha-4; PTPRF-interacting protein alpha-4;)
genome : 203,020,368 - 203,046,081 (25,714)
query : 1 - 3,178 (3,178/3,178)
16 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.989;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.997)3'
coverage = 1.000
InterPro :
IPR001660 : Sterile alpha motif domain
IPR011510 : Sterile alpha motif, type 2
IPR013761 : Sterile alpha motif/pointed domain
IPR021129 : Sterile alpha motif, type 1
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto_nucl 17, cyto 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001485)
HIX0001485
HIT000711716 (
ENST00000599966
)
(Liprin-alpha-4; Protein tyrosine phosphatase receptor type f polypeptide-interacting protein alpha-4; PTPRF-interacting protein alpha-4;)
genome : 203,020,368 - 203,046,081 (25,714)
query : 1 - 3,178 (3,178/3,178)
16 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto_nucl 17, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001485)
HIX0001485
HIT000712191 (
ENST00000600447
)
(Liprin-alpha-4.)
genome : 203,022,831 - 203,024,685 (1,855)
query : 1 - 385 (385/385)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto_nucl 10.5, nucl 8.5, cyto 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001485)
HIX0001485
HIT000711269 (
ENST00000599514
)
(Liprin-alpha-4.)
genome : 203,022,874 - 203,025,934 (3,061)
query : 1 - 573 (573/573)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23.5, cyto_nucl 16, cyto 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001485)
HIX0001485
HIT000063161
(
AF034801
)
(Liprin-alpha-4.)
genome : 203,024,672 - 203,044,777 (20,106)
query : 1 - 1,498 (1,498/1,500)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.999
InterPro :
IPR001660 : Sterile alpha motif domain
IPR011510 : Sterile alpha motif, type 2
IPR013761 : Sterile alpha motif/pointed domain
IPR021129 : Sterile alpha motif, type 1
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14, nucl 10, cyto_nucl 7, E.R._mito 7,
mito_pero 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001485)
HIX0001485
HIT000006639
(
AK023365
)
(Liprin-alpha-4.)
genome : 203,025,967 - 203,047,863 (21,897)
query : 1 - 2,587 (2,587/2,587)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR001660 : Sterile alpha motif domain
IPR011510 : Sterile alpha motif, type 2
IPR013761 : Sterile alpha motif/pointed domain
IPR021129 : Sterile alpha motif, type 1
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001485)
HIX0001485
HIT000000614
(
AB020704
)
(Liprin-alpha-4.)
genome : 203,026,035 - 203,047,863 (21,829)
query : 1 - 3,605 (3,605/3,605)
12 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.997)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto 11
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001485)
HIX0001485
HIT000706457 (
ENST00000594656
)
(Liprin-alpha-2 isoform i.)
genome : 203,030,494 - 203,036,893 (6,400)
query : 1 - 560 (560/560)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, extr 11, cyto_nucl 10.5, nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001485)
HIX0001485
HIT000044408
(
AK124535
)
(Liprin-alpha-4.)
genome : 203,032,087 - 203,047,863 (15,777)
query : 1 - 4,546 (4,546/4,546)
5 exons
identity = 0.998
5'(0.999;1.000;1.000;1.000;0.997)3'
coverage = 1.000
InterPro :
IPR001660 : Sterile alpha motif domain
IPR011510 : Sterile alpha motif, type 2
IPR013761 : Sterile alpha motif/pointed domain
IPR021129 : Sterile alpha motif, type 1
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15.5, cyto 14.5, nucl 13.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001485)
HIX0001485
HIT000590118 (
ENST00000486360
)
(Liprin-alpha-4.)
genome : 203,032,087 - 203,047,863 (15,777)
query : 1 - 4,547 (4,547/4,547)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15.5, cyto 14.5, nucl 13.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001485)
HIX0001485
HIT000708805 (
ENST00000597023
)
(Liprin-alpha-4.)
genome : 203,036,573 - 203,037,728 (1,156)
query : 1 - 496 (496/496)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, nucl 3, cyto 3, cyto_nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001485)
HIX0001485
HIT000046058
(
AK126185
)
(Liprin-alpha-4.)
genome : 203,044,151 - 203,047,858 (3,708)
query : 1 - 3,708 (3,708/3,708)
1 exon
identity = 0.997
5'(0.997)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 13.5, nucl 11.5, extr 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001485)
HIX0001485
HIT000706375 (
ENST00000594572
)
(Hypothetical short protein.)
genome : 203,045,131 - 203,046,109 (979)
query : 1 - 576 (576/576)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 11.5, cysk 7, extr 5, nucl 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001485)
HIX0023649
HIT000054020
(
BC053899
)
Representative transcript
(Myogenin; Class C basic helix-loop-helix protein 3; bHLHc3; Myogenic factor 4; Myf-4;)
genome : 203,052,258 - 203,055,166 (2,909)
query : 1 - 1,529 (1,529/1,573)
3 exons
identity = 0.997
3'(0.996;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR002546 : Myogenic basic muscle-specific protein
IPR011598 : Myc-type, basic helix-loop-helix (bHLH) domain
GO :
0003677 : Molecular Function : DNA binding
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
0007517 : Biological Process : muscle organ development
0046983 : Molecular Function : protein dimerization activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023649)
Ortholog candidate ( ->
Evola
)
Danio
sp. (Zebrafish) : AF202639
Takifugu
sp. (Fugu) : AY445318
Tetraodon
sp. (Tetraodon) : AY576805
Mus
sp. (Mouse) : BC048683
Gallus
sp. (Chicken) : D90157
Equus
sp. (Horse) : ENSECAT00000016697
Oryzias
sp. (Medaka) : ENSORLT00000019915
Pongo
sp. (Orangutan) : ENSPPYT00000000391
Rattus
sp. (Rat) : M24393
Macaca
sp. (Macaque) : XM_001104569
Monodelphis
sp. (Opossum) : XM_001364729
Canis
sp. (Dog) : XM_547345
Pan
sp. (Chimpanzee) : XR_023370
HIX0023649
HIT000199372 (
NM_002479
)
(Myogenin; Class C basic helix-loop-helix protein 3; bHLHc3; Myogenic factor 4; Myf-4;)
genome : 203,052,258 - 203,055,166 (2,909)
query : 1 - 1,532 (1,532/1,576)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023649)
HIX0023649
HIT000105136 (
ENST00000241651
)
(Myogenin; Class C basic helix-loop-helix protein 3; bHLHc3; Myogenic factor 4; Myf-4;)
genome : 203,052,260 - 203,055,164 (2,905)
query : 1 - 1,528 (1,528/1,528)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023649)
HIX0023649
HIT000321627
(
X17651
)
(Myogenin; Class C basic helix-loop-helix protein 3; bHLHc3; Myogenic factor 4; Myf-4;)
genome : 203,052,347 - 203,055,141 (2,795)
query : 1 - 1,412 (1,412/1,418)
3 exons
identity = 0.993
3'(0.989;1.000;0.998)5'
coverage = 0.996
InterPro :
IPR002546 : Myogenic basic muscle-specific protein
IPR011598 : Myc-type, basic helix-loop-helix (bHLH) domain
GO :
0003677 : Molecular Function : DNA binding
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
0007517 : Biological Process : muscle organ development
0046983 : Molecular Function : protein dimerization activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023649)
HIX0023649
HIT000100153
(
BT007233
)
(Myogenin; Class C basic helix-loop-helix protein 3; bHLHc3; Myogenic factor 4; Myf-4;)
genome : 203,053,040 - 203,055,089 (2,050)
query : 1 - 673 (673/675)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 0.997
InterPro :
IPR002546 : Myogenic basic muscle-specific protein
IPR011598 : Myc-type, basic helix-loop-helix (bHLH) domain
GO :
0003677 : Molecular Function : DNA binding
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
0007517 : Biological Process : muscle organ development
0046983 : Molecular Function : protein dimerization activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023649)
HIX0001486
HIT000118368 (
ENST00000309502
)
(Adenosine receptor A1;)
genome : 203,059,782 - 203,136,532 (76,751)
query : 1 - 2,896 (2,896/2,896)
5 exons
identity = 0.996
5'(0.899;0.990;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 27, E.R. 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001486)
HIX0001486
HIT000192503
(
L22214
)
Representative transcript
(Adenosine receptor A1;)
genome : 203,059,782 - 203,136,532 (76,751)
query : 1 - 2,900 (2,900/2,900)
5 exons
identity = 0.991
5'(0.899;0.990;0.994;1.000;0.993)3'
coverage = 1.000
InterPro :
IPR001068 : Adenosine A1 receptor
IPR001634 : Adenosine receptor
GO :
0001609 : Molecular Function : G-protein coupled adenosine receptor activity
0001973 : Biological Process : adenosine receptor signaling pathway
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 27, E.R. 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001486)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : BC079624
Pongo
sp. (Orangutan) : CR857304
Monodelphis
sp. (Opossum) : ENSMODT00000037342
Oryzias
sp. (Medaka) : ENSORLT00000007979
Oryzias
sp. (Medaka) : ENSORLT00000020093
Danio
sp. (Zebrafish) : NM_001128584
Takifugu
sp. (Fugu) : SINFRUT00000128561
Gallus
sp. (Chicken) : U28380
Canis
sp. (Dog) : X14051
Pan
sp. (Chimpanzee) : XM_001154129
Equus
sp. (Horse) : XM_001496410
Rattus
sp. (Rat) : Y12519
HIX0001486
HIT000348516 (
ENST00000367236
)
(Adenosine receptor A1;)
genome : 203,096,193 - 203,136,533 (40,341)
query : 1 - 3,407 (3,407/3,407)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 27, E.R. 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001486)
HIX0001486
HIT000047625
(
AK127752
)
(Adenosine receptor A1;)
genome : 203,096,193 - 203,136,532 (40,340)
query : 1 - 3,405 (3,405/3,405)
3 exons
identity = 0.998
5'(0.999;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR001068 : Adenosine A1 receptor
IPR001634 : Adenosine receptor
GO :
0001609 : Molecular Function : G-protein coupled adenosine receptor activity
0001973 : Biological Process : adenosine receptor signaling pathway
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 27, E.R. 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001486)
HIX0160476
HIT000518989 (
ENST00000421055
)
(Hypothetical short protein.)
genome : 203,096,387 - 203,097,082 (696)
query : 1 - 380 (380/380)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
This sequence is too short.
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0160476)
HIX0001486
HIT000322924
(
X68485
)
(Adenosine receptor A1;)
genome : 203,096,868 - 203,135,553 (38,686)
query : 194 - 1,942 (1,749/1,942)
3 exons
identity = 0.997
5'(0.979;1.000;0.999)3'
coverage = 0.901
InterPro :
IPR001068 : Adenosine A1 receptor
IPR001634 : Adenosine receptor
GO :
0001609 : Molecular Function : G-protein coupled adenosine receptor activity
0001973 : Biological Process : adenosine receptor signaling pathway
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 27, E.R. 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001486)
HIX0001486
HIT000197696 (
NM_000674
)
(Adenosine receptor A1;)
genome : 203,096,836 - 203,136,533 (39,698)
query : 1 - 2,919 (2,919/2,937)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 27, E.R. 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001486)
HIX0001486
HIT000397720 (
NM_001048230
)
(Adenosine receptor A1;)
genome : 203,096,836 - 203,136,533 (39,698)
query : 1 - 2,764 (2,764/2,782)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 27, E.R. 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001486)
HIX0001486
HIT000130684 (
ENST00000337894
)
(Adenosine receptor A1;)
genome : 203,096,836 - 203,136,533 (39,698)
query : 1 - 2,919 (2,919/2,919)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 27, E.R. 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001486)
HIX0001486
HIT000422725
(
AK289928
)
(Adenosine receptor A1;)
genome : 203,096,836 - 203,135,100 (38,265)
query : 1 - 1,486 (1,486/1,486)
4 exons
identity = 0.999
5'(1.000;1.000;0.997;0.999)3'
coverage = 1.000
InterPro :
IPR001068 : Adenosine A1 receptor
IPR001634 : Adenosine receptor
GO :
0001609 : Molecular Function : G-protein coupled adenosine receptor activity
0001973 : Biological Process : adenosine receptor signaling pathway
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 27, E.R. 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001486)
HIX0001486
HIT000019915
(
AK095060
)
(Adenosine receptor A1;)
genome : 203,096,851 - 203,136,533 (39,683)
query : 1 - 2,456 (2,456/2,456)
5 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR001068 : Adenosine A1 receptor
IPR001634 : Adenosine receptor
GO :
0001609 : Molecular Function : G-protein coupled adenosine receptor activity
0001973 : Biological Process : adenosine receptor signaling pathway
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001486)
HIX0001486
HIT000040207
(
BC026340
)
(Adenosine receptor A1;)
genome : 203,096,858 - 203,136,531 (39,674)
query : 1 - 2,739 (2,739/2,756)
3 exons
identity = 0.996
5'(0.995;0.992;0.997)3'
coverage = 0.999
InterPro :
IPR001068 : Adenosine A1 receptor
IPR001634 : Adenosine receptor
GO :
0001609 : Molecular Function : G-protein coupled adenosine receptor activity
0001973 : Biological Process : adenosine receptor signaling pathway
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 27, E.R. 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001486)
HIX0001486
HIT000215622
(
S45235
)
(Adenosine receptor A1;)
genome : 203,097,030 - 203,135,231 (38,202)
query : 1 - 1,267 (1,267/1,267)
3 exons
identity = 0.998
5'(1.000;0.997;0.998)3'
coverage = 1.000
InterPro :
IPR001068 : Adenosine A1 receptor
IPR001634 : Adenosine receptor
GO :
0001609 : Molecular Function : G-protein coupled adenosine receptor activity
0001973 : Biological Process : adenosine receptor signaling pathway
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 27, E.R. 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001486)
HIX0001486
HIT000348515 (
ENST00000367235
)
(Adenosine receptor A1;)
genome : 203,097,434 - 203,135,877 (38,444)
query : 1 - 2,219 (2,219/2,219)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001486)
HIX0001486
HIT000427599
(
AK308733
)
(Adenosine receptor A1;)
genome : 203,097,439 - 203,135,348 (37,910)
query : 1 - 1,551 (1,551/1,551)
4 exons
identity = 0.999
5'(1.000;0.997;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR001068 : Adenosine A1 receptor
IPR001634 : Adenosine receptor
GO :
0001609 : Molecular Function : G-protein coupled adenosine receptor activity
0001973 : Biological Process : adenosine receptor signaling pathway
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001486)
HIX0001486
HIT000490208
(
AK295584
)
(Adenosine receptor A1;)
genome : 203,097,439 - 203,135,331 (37,893)
query : 1 - 1,387 (1,387/1,387)
3 exons
identity = 0.999
5'(1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR001068 : Adenosine A1 receptor
IPR001634 : Adenosine receptor
GO :
0001609 : Molecular Function : G-protein coupled adenosine receptor activity
0001973 : Biological Process : adenosine receptor signaling pathway
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001486)
HIX0001486
HIT000488271
(
AK293647
)
(Adenosine receptor A1;)
genome : 203,097,457 - 203,135,320 (37,864)
query : 1 - 1,639 (1,639/1,639)
3 exons
identity = 0.999
5'(1.000;0.997;1.000)3'
coverage = 1.000
InterPro :
IPR001068 : Adenosine A1 receptor
IPR001634 : Adenosine receptor
GO :
0001609 : Molecular Function : G-protein coupled adenosine receptor activity
0001973 : Biological Process : adenosine receptor signaling pathway
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001486)
HIX0001486
HIT000499719
(
AK316106
)
(Adenosine receptor A1;)
genome : 203,097,464 - 203,135,378 (37,915)
query : 1 - 1,690 (1,690/1,690)
3 exons
identity = 0.998
5'(1.000;0.995;0.999)3'
coverage = 1.000
InterPro :
IPR001068 : Adenosine A1 receptor
IPR001634 : Adenosine receptor
GO :
0001609 : Molecular Function : G-protein coupled adenosine receptor activity
0001973 : Biological Process : adenosine receptor signaling pathway
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001486)
HIX0001486
HIT000215808
(
S56143
)
(Adenosine receptor A1;)
genome : 203,097,912 - 203,135,272 (37,361)
query : 9 - 1,290 (1,282/1,290)
2 exons
identity = 0.998
5'(0.997;0.999)3'
coverage = 0.994
InterPro :
IPR001068 : Adenosine A1 receptor
IPR001634 : Adenosine receptor
GO :
0001609 : Molecular Function : G-protein coupled adenosine receptor activity
0001973 : Biological Process : adenosine receptor signaling pathway
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 27, E.R. 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001486)
HIX0001486
HIT000058028
(
AB004662
)
(Adenosine receptor A1;)
genome : 203,097,970 - 203,135,028 (37,059)
query : 1 - 981 (981/981)
2 exons
identity = 0.999
5'(0.997;1.000)3'
coverage = 1.000
InterPro :
IPR001068 : Adenosine A1 receptor
IPR001634 : Adenosine receptor
GO :
0001609 : Molecular Function : G-protein coupled adenosine receptor activity
0001973 : Biological Process : adenosine receptor signaling pathway
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 27, E.R. 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001486)
HIX0001486
HIT000084678
(
AY136746
)
(Adenosine receptor A1;)
genome : 203,097,970 - 203,135,028 (37,059)
query : 1 - 981 (981/981)
2 exons
identity = 0.999
5'(0.997;1.000)3'
coverage = 1.000
InterPro :
IPR001068 : Adenosine A1 receptor
IPR001634 : Adenosine receptor
GO :
0001609 : Molecular Function : G-protein coupled adenosine receptor activity
0001973 : Biological Process : adenosine receptor signaling pathway
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 27, E.R. 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001486)
HIX0001486
HIT000266692
(
BT019854
)
(Adenosine receptor A1;)
genome : 203,097,970 - 203,135,028 (37,059)
query : 1 - 981 (981/981)
2 exons
identity = 0.999
5'(1.000;0.998)3'
coverage = 1.000
InterPro :
IPR001068 : Adenosine A1 receptor
IPR001634 : Adenosine receptor
GO :
0001609 : Molecular Function : G-protein coupled adenosine receptor activity
0001973 : Biological Process : adenosine receptor signaling pathway
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 27, E.R. 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001486)
HIX0001486
HIT000564087
(
EF057066
)
(Adenosine receptor A1;)
genome : 203,097,970 - 203,135,028 (37,059)
query : 1 - 1,186 (1,186/1,186)
2 exons
identity = 0.998
5'(1.000;0.998)3'
coverage = 1.000
InterPro :
IPR001068 : Adenosine A1 receptor
IPR001634 : Adenosine receptor
GO :
0001609 : Molecular Function : G-protein coupled adenosine receptor activity
0001973 : Biological Process : adenosine receptor signaling pathway
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001486)
HIX0001486
HIT000268621
(
CR541749
)
(Adenosine receptor A1;)
genome : 203,097,970 - 203,135,025 (37,056)
query : 1 - 978 (978/978)
2 exons
identity = 0.998
5'(0.997;0.998)3'
coverage = 1.000
InterPro :
IPR001068 : Adenosine A1 receptor
IPR001634 : Adenosine receptor
GO :
0001609 : Molecular Function : G-protein coupled adenosine receptor activity
0001973 : Biological Process : adenosine receptor signaling pathway
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 27, E.R. 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001486)
HIX0001486
HIT000568788 (
ENST00000464019
)
(Adenosine receptor A1;)
genome : 203,098,762 - 203,134,869 (36,108)
query : 1 - 751 (751/751)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001486)
HIX0160865
HIT000532199 (
ENST00000434265
)
(Hypothetical short protein.)
genome : 203,113,092 - 203,122,028 (8,937)
query : 1 - 741 (741/741)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, cyto_nucl 9, extr 7, mito 7, cyto 3.5,
extr_plas 3.5, E.R._mito 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0160865)
HIX0001486
HIT000576904 (
ENST00000472535
)
(Adenosine receptor A1;)
genome : 203,119,760 - 203,135,877 (16,118)
query : 1 - 1,636 (1,636/1,636)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 22, mito 4, E.R._mito 3.5, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001486)
HIX0001486
HIT000571869 (
ENST00000467253
)
(Adenosine receptor A1;)
genome : 203,121,774 - 203,135,243 (13,470)
query : 1 - 968 (968/968)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 25, E.R._mito 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001486)
HIX0023646
HIT000052851
(
BC044226
)
Representative transcript
(Myosin-binding protein H; MyBP-H; H-protein;)
genome : 203,136,949 - 203,144,942 (7,994)
query : 1 - 1,796 (1,796/1,821)
11 exons
identity = 0.998
3'(0.996;1.000;0.995;1.000;1.000;1.000;0.995;
1.000;1.000;1.000;1.000)5'
coverage = 0.999
InterPro :
IPR003598 : Immunoglobulin subtype 2
IPR003961 : Fibronectin type III
IPR013098 : Immunoglobulin I-set
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16.5, nucl 16, cyto 13
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023646)
Ortholog candidate ( ->
Evola
)
Rattus
sp. (Rat) : BC061993
Danio
sp. (Zebrafish) : BC067675
Oryzias
sp. (Medaka) : ENSORLT00000007638
Pongo
sp. (Orangutan) : ENSPPYT00000000389
Tetraodon
sp. (Tetraodon) : GSTENT00017866001
Gallus
sp. (Chicken) : L05605
Takifugu
sp. (Fugu) : SINFRUT00000164286
Mus
sp. (Mouse) : U68267
Macaca
sp. (Macaque) : XM_001103823
Monodelphis
sp. (Opossum) : XM_001369825
Equus
sp. (Horse) : XM_001495875
Pan
sp. (Chimpanzee) : XM_514110
Canis
sp. (Dog) : XM_547344
HIX0023646
HIT000201715 (
NM_004997
)
(Myosin-binding protein H; MyBP-H; H-protein;)
genome : 203,136,939 - 203,144,942 (8,004)
query : 1 - 1,806 (1,806/1,806)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16.5, nucl 16, cyto 13
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023646)
HIX0023646
HIT000106805 (
ENST00000255416
)
(Myosin-binding protein H; MyBP-H; H-protein;)
genome : 203,136,939 - 203,144,941 (8,003)
query : 1 - 1,805 (1,805/1,805)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16.5, nucl 16, cyto 13
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023646)
HIX0023646
HIT000191682
(
L05606
)
(Myosin-binding protein H; MyBP-H; H-protein;)
genome : 203,136,939 - 203,144,911 (7,973)
query : 1 - 1,772 (1,772/1,772)
11 exons
identity = 0.994
3'(0.996;0.941;0.995;0.978;1.000;1.000;1.000;
1.000;1.000;1.000;0.991)5'
coverage = 1.000
InterPro :
IPR003961 : Fibronectin type III
IPR013098 : Immunoglobulin I-set
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 16, cyto 12.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023646)
HIX0001487
HIT000052141
(
BC039132
)
(Chitinase-3-like protein 1; 39 kDa synovial protein; Cartilage glycoprotein 39; CGP-39; GP-39; hCGP-39; YKL-40; Precursor;)
genome : 203,148,065 - 203,155,818 (7,754)
query : 1 - 1,727 (1,727/1,776)
10 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000;1.000;0.993;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001223 : Glycoside hydrolase, family 18, catalytic domain
IPR011583 : Chitinase II
IPR013781 : Glycoside hydrolase, catalytic domain
IPR017853 : Glycoside hydrolase superfamily
IPR028538 : Chitinase-3-like protein 1
IPR029070 : Chitinase insertion domain
GO :
0004553 : Molecular Function : hydrolase activity, hydrolyzing O-glycosyl compounds
0004568 : Molecular Function : chitinase activity
0005615 : Cellular Component : extracellular space
0005975 : Biological Process : carbohydrate metabolic process
0006032 : Biological Process : chitin catabolic process
0008061 : Molecular Function : chitin binding
0045766 : Biological Process : positive regulation of angiogenesis
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 29, nucl 1.5, cyto_nucl 1.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001487)
HIX0001487
HIT000052022
(
BC038354
)
(Chitinase-3-like protein 1; 39 kDa synovial protein; Cartilage glycoprotein 39; CGP-39; GP-39; hCGP-39; YKL-40; Precursor;)
genome : 203,148,065 - 203,155,809 (7,745)
query : 1 - 1,718 (1,718/1,763)
10 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000;1.000;0.993;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001223 : Glycoside hydrolase, family 18, catalytic domain
IPR011583 : Chitinase II
IPR013781 : Glycoside hydrolase, catalytic domain
IPR017853 : Glycoside hydrolase superfamily
IPR028538 : Chitinase-3-like protein 1
IPR029070 : Chitinase insertion domain
GO :
0004553 : Molecular Function : hydrolase activity, hydrolyzing O-glycosyl compounds
0004568 : Molecular Function : chitinase activity
0005615 : Cellular Component : extracellular space
0005975 : Biological Process : carbohydrate metabolic process
0006032 : Biological Process : chitin catabolic process
0008061 : Molecular Function : chitin binding
0045766 : Biological Process : positive regulation of angiogenesis
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 29, nucl 1.5, cyto_nucl 1.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001487)
HIX0001487
HIT000198271 (
NM_001276
)
(Chitinase-3-like protein 1; 39 kDa synovial protein; Cartilage glycoprotein 39; CGP-39; GP-39; hCGP-39; YKL-40; Precursor;)
genome : 203,148,059 - 203,155,922 (7,864)
query : 1 - 1,837 (1,837/1,867)
10 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 0.999
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 27, mito 2, lyso 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001487)
HIX0001487
HIT000384396
(
AK225266
)
(Chitinase-3-like protein 1; 39 kDa synovial protein; Cartilage glycoprotein 39; CGP-39; GP-39; hCGP-39; YKL-40; Precursor;)
genome : 203,148,059 - 203,155,831 (7,773)
query : 1 - 1,746 (1,746/1,776)
10 exons
identity = 0.998
3'(0.995;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 0.999
InterPro :
IPR001223 : Glycoside hydrolase, family 18, catalytic domain
IPR011583 : Chitinase II
IPR013781 : Glycoside hydrolase, catalytic domain
IPR017853 : Glycoside hydrolase superfamily
IPR028538 : Chitinase-3-like protein 1
IPR029070 : Chitinase insertion domain
GO :
0004553 : Molecular Function : hydrolase activity, hydrolyzing O-glycosyl compounds
0004568 : Molecular Function : chitinase activity
0005615 : Cellular Component : extracellular space
0005975 : Biological Process : carbohydrate metabolic process
0006032 : Biological Process : chitin catabolic process
0008061 : Molecular Function : chitin binding
0045766 : Biological Process : positive regulation of angiogenesis
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 27, mito 2, lyso 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001487)
HIX0001487
HIT000033841
(
BC008568
)
Representative transcript
(Chitinase-3-like protein 1; 39 kDa synovial protein; Cartilage glycoprotein 39; CGP-39; GP-39; hCGP-39; YKL-40; Precursor;)
genome : 203,148,065 - 203,155,868 (7,804)
query : 1 - 1,777 (1,777/1,801)
10 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001223 : Glycoside hydrolase, family 18, catalytic domain
IPR011583 : Chitinase II
IPR013781 : Glycoside hydrolase, catalytic domain
IPR017853 : Glycoside hydrolase superfamily
IPR028538 : Chitinase-3-like protein 1
IPR029070 : Chitinase insertion domain
GO :
0004553 : Molecular Function : hydrolase activity, hydrolyzing O-glycosyl compounds
0004568 : Molecular Function : chitinase activity
0005615 : Cellular Component : extracellular space
0005975 : Biological Process : carbohydrate metabolic process
0006032 : Biological Process : chitin catabolic process
0008061 : Molecular Function : chitin binding
0045766 : Biological Process : positive regulation of angiogenesis
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 27, mito 2, lyso 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001487)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK051475
Rattus
sp. (Rat) : BC091365
Danio
sp. (Zebrafish) : BC153462
Gallus
sp. (Chicken) : CR407360
Pongo
sp. (Orangutan) : CR858592
Equus
sp. (Horse) : EF694759
Canis
sp. (Dog) : ENSCAFT00000037736
Oryzias
sp. (Medaka) : ENSORLT00000017096
Tetraodon
sp. (Tetraodon) : GSTENT00023605001
Takifugu
sp. (Fugu) : SINFRUT00000162999
Macaca
sp. (Macaque) : XM_001103739
Pan
sp. (Chimpanzee) : XM_001154878
Monodelphis
sp. (Opossum) : XM_001364797
Pan
sp. (Chimpanzee) : XM_514111
HIX0001487
HIT000093528
(
BC034684
)
(Hypothetical short protein.)
genome : 203,148,065 - 203,148,611 (547)
query : 1 - 459 (459/480)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto_nucl 7.16667, cyto 6.5, cyto_pero 5,
nucl 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001487)
HIX0001487
HIT000056955
(
BX648308
)
(Chitinase-3-like protein 1; 39 kDa synovial protein; Cartilage glycoprotein 39; CGP-39; GP-39; hCGP-39; YKL-40; Precursor;)
genome : 203,148,065 - 203,151,775 (3,711)
query : 1 - 3,513 (3,513/3,533)
2 exons
identity = 0.989
3'(0.945;0.999)5'
coverage = 1.000
InterPro :
IPR001223 : Glycoside hydrolase, family 18, catalytic domain
IPR013781 : Glycoside hydrolase, catalytic domain
IPR017853 : Glycoside hydrolase superfamily
IPR028538 : Chitinase-3-like protein 1
IPR029070 : Chitinase insertion domain
GO :
0004553 : Molecular Function : hydrolase activity, hydrolyzing O-glycosyl compounds
0005615 : Cellular Component : extracellular space
0005975 : Biological Process : carbohydrate metabolic process
0008061 : Molecular Function : chitin binding
0045766 : Biological Process : positive regulation of angiogenesis
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 22, cyto_nucl 13.5, extr 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001487)
HIX0001487
HIT000384714
(
AK225584
)
(Chitinase-3-like protein 1; 39 kDa synovial protein; Cartilage glycoprotein 39; CGP-39; GP-39; hCGP-39; YKL-40; Precursor;)
genome : 203,148,065 - 203,155,831 (7,767)
query : 1 - 1,740 (1,740/1,759)
10 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000;0.992;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001223 : Glycoside hydrolase, family 18, catalytic domain
IPR011583 : Chitinase II
IPR013781 : Glycoside hydrolase, catalytic domain
IPR017853 : Glycoside hydrolase superfamily
IPR028538 : Chitinase-3-like protein 1
IPR029070 : Chitinase insertion domain
GO :
0004553 : Molecular Function : hydrolase activity, hydrolyzing O-glycosyl compounds
0004568 : Molecular Function : chitinase activity
0005615 : Cellular Component : extracellular space
0005975 : Biological Process : carbohydrate metabolic process
0006032 : Biological Process : chitin catabolic process
0008061 : Molecular Function : chitin binding
0045766 : Biological Process : positive regulation of angiogenesis
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 27, mito 2, lyso 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001487)
HIX0001487
HIT000196457
(
M80927
)
(Chitinase-3-like protein 1; 39 kDa synovial protein; Cartilage glycoprotein 39; CGP-39; GP-39; hCGP-39; YKL-40; Precursor;)
genome : 203,148,057 - 203,155,822 (7,766)
query : 1 - 1,741 (1,741/1,741)
10 exons
identity = 0.994
3'(0.986;0.991;1.000;1.000;1.000;0.993;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001223 : Glycoside hydrolase, family 18, catalytic domain
IPR011583 : Chitinase II
IPR013781 : Glycoside hydrolase, catalytic domain
IPR017853 : Glycoside hydrolase superfamily
IPR028538 : Chitinase-3-like protein 1
IPR029070 : Chitinase insertion domain
GO :
0004553 : Molecular Function : hydrolase activity, hydrolyzing O-glycosyl compounds
0004568 : Molecular Function : chitinase activity
0005615 : Cellular Component : extracellular space
0005975 : Biological Process : carbohydrate metabolic process
0006032 : Biological Process : chitin catabolic process
0008061 : Molecular Function : chitin binding
0045766 : Biological Process : positive regulation of angiogenesis
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 27, mito 2, lyso 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001487)
HIX0001487
HIT000106804 (
ENST00000255409
)
(Chitinase-3-like protein 1; 39 kDa synovial protein; Cartilage glycoprotein 39; CGP-39; GP-39; hCGP-39; YKL-40; Precursor;)
genome : 203,148,059 - 203,155,877 (7,819)
query : 1 - 1,792 (1,792/1,792)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 27, mito 2, lyso 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001487)
HIX0001487
HIT000049413
(
AK130142
)
(Chitinase-3-like protein 1; 39 kDa synovial protein; Cartilage glycoprotein 39; CGP-39; GP-39; hCGP-39; YKL-40; Precursor;)
genome : 203,148,059 - 203,155,832 (7,774)
query : 1 - 1,747 (1,747/1,747)
10 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000;1.000;0.993;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001223 : Glycoside hydrolase, family 18, catalytic domain
IPR011583 : Chitinase II
IPR013781 : Glycoside hydrolase, catalytic domain
IPR017853 : Glycoside hydrolase superfamily
IPR028538 : Chitinase-3-like protein 1
IPR029070 : Chitinase insertion domain
GO :
0004553 : Molecular Function : hydrolase activity, hydrolyzing O-glycosyl compounds
0004568 : Molecular Function : chitinase activity
0005615 : Cellular Component : extracellular space
0005975 : Biological Process : carbohydrate metabolic process
0006032 : Biological Process : chitin catabolic process
0008061 : Molecular Function : chitin binding
0045766 : Biological Process : positive regulation of angiogenesis
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 29, nucl 1.5, cyto_nucl 1.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001487)
HIX0001487
HIT000020313
(
AK095458
)
(Chitinase-3-like protein 1; 39 kDa synovial protein; Cartilage glycoprotein 39; CGP-39; GP-39; hCGP-39; YKL-40; Precursor;)
genome : 203,148,059 - 203,151,262 (3,204)
query : 1 - 1,920 (1,920/1,920)
2 exons
identity = 0.999
3'(0.999;1.000)5'
coverage = 1.000
InterPro :
IPR013781 : Glycoside hydrolase, catalytic domain
IPR017853 : Glycoside hydrolase superfamily
IPR028538 : Chitinase-3-like protein 1
IPR029070 : Chitinase insertion domain
GO :
0005615 : Cellular Component : extracellular space
0005975 : Biological Process : carbohydrate metabolic process
0008061 : Molecular Function : chitin binding
0045766 : Biological Process : positive regulation of angiogenesis
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto_nucl 12, nucl 10, cyto 10
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001487)
HIX0001487
HIT000577526 (
ENST00000473185
)
(Chitinase-3-like protein 1; 39 kDa synovial protein; Cartilage glycoprotein 39; CGP-39; GP-39; hCGP-39; YKL-40; Precursor;)
genome : 203,148,059 - 203,151,262 (3,204)
query : 1 - 1,920 (1,920/1,920)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto_nucl 12, nucl 10, cyto 10
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001487)
HIX0001487
HIT000049471
(
AK130200
)
(Chitinase-3-like protein 1; 39 kDa synovial protein; Cartilage glycoprotein 39; CGP-39; GP-39; hCGP-39; YKL-40; Precursor;)
genome : 203,148,066 - 203,155,832 (7,767)
query : 1 - 1,740 (1,740/1,740)
10 exons
identity = 0.998
3'(0.995;1.000;1.000;1.000;1.000;1.000;0.982;
1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001223 : Glycoside hydrolase, family 18, catalytic domain
IPR011583 : Chitinase II
IPR013781 : Glycoside hydrolase, catalytic domain
IPR017853 : Glycoside hydrolase superfamily
IPR028538 : Chitinase-3-like protein 1
IPR029070 : Chitinase insertion domain
GO :
0004553 : Molecular Function : hydrolase activity, hydrolyzing O-glycosyl compounds
0004568 : Molecular Function : chitinase activity
0005615 : Cellular Component : extracellular space
0005975 : Biological Process : carbohydrate metabolic process
0006032 : Biological Process : chitin catabolic process
0008061 : Molecular Function : chitin binding
0045766 : Biological Process : positive regulation of angiogenesis
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 27, mito 2, lyso 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001487)
HIX0001487
HIT000329394
(
AB209459
)
(Chitinase-3-like protein 1; 39 kDa synovial protein; Cartilage glycoprotein 39; CGP-39; GP-39; hCGP-39; YKL-40; Precursor;)
genome : 203,148,066 - 203,154,305 (6,240)
query : 1 - 6,239 (6,239/6,239)
1 exon
identity = 0.998
3'(0.998)5'
coverage = 1.000
InterPro :
IPR028538 : Chitinase-3-like protein 1
IPR029070 : Chitinase insertion domain
GO :
0005615 : Cellular Component : extracellular space
0008061 : Molecular Function : chitin binding
0045766 : Biological Process : positive regulation of angiogenesis
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, cyto 8.5, cyto_nucl 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001487)
HIX0001487
HIT000504852 (
ENST00000404436
)
(Chitinase-3-like protein 1; 39 kDa synovial protein; Cartilage glycoprotein 39; CGP-39; GP-39; hCGP-39; YKL-40; Precursor;)
genome : 203,148,109 - 203,151,933 (3,825)
query : 1 - 921 (921/921)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 13, cyto 11, cyto_nucl 8, extr 3, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001487)
HIX0001487
HIT000582836 (
ENST00000478742
)
(Chitinase-3-like protein 1; 39 kDa synovial protein; Cartilage glycoprotein 39; CGP-39; GP-39; hCGP-39; YKL-40; Precursor;)
genome : 203,148,262 - 203,149,261 (1,000)
query : 1 - 825 (825/825)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 22, cyto_nucl 13.5, extr 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001487)
HIX0001487
HIT000431777
(
AK312911
)
(Chitinase-3-like protein 1; 39 kDa synovial protein; Cartilage glycoprotein 39; CGP-39; GP-39; hCGP-39; YKL-40; Precursor;)
genome : 203,148,573 - 203,155,905 (7,333)
query : 1 - 1,306 (1,306/1,306)
10 exons
identity = 0.999
3'(0.993;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001223 : Glycoside hydrolase, family 18, catalytic domain
IPR011583 : Chitinase II
IPR013781 : Glycoside hydrolase, catalytic domain
IPR017853 : Glycoside hydrolase superfamily
IPR028538 : Chitinase-3-like protein 1
IPR029070 : Chitinase insertion domain
GO :
0004553 : Molecular Function : hydrolase activity, hydrolyzing O-glycosyl compounds
0004568 : Molecular Function : chitinase activity
0005615 : Cellular Component : extracellular space
0005975 : Biological Process : carbohydrate metabolic process
0006032 : Biological Process : chitin catabolic process
0008061 : Molecular Function : chitin binding
0045766 : Biological Process : positive regulation of angiogenesis
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 27, mito 2, lyso 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001487)
HIX0001487
HIT000100143
(
BT007223
)
(Chitinase-3-like protein 1; 39 kDa synovial protein; Cartilage glycoprotein 39; CGP-39; GP-39; hCGP-39; YKL-40; Precursor;)
genome : 203,148,573 - 203,155,751 (7,179)
query : 1 - 1,152 (1,152/1,152)
10 exons
identity = 0.999
3'(0.993;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001223 : Glycoside hydrolase, family 18, catalytic domain
IPR011583 : Chitinase II
IPR013781 : Glycoside hydrolase, catalytic domain
IPR017853 : Glycoside hydrolase superfamily
IPR028538 : Chitinase-3-like protein 1
IPR029070 : Chitinase insertion domain
GO :
0004553 : Molecular Function : hydrolase activity, hydrolyzing O-glycosyl compounds
0004568 : Molecular Function : chitinase activity
0005615 : Cellular Component : extracellular space
0005975 : Biological Process : carbohydrate metabolic process
0006032 : Biological Process : chitin catabolic process
0008061 : Molecular Function : chitin binding
0045766 : Biological Process : positive regulation of angiogenesis
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 27, mito 2, lyso 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001487)
HIX0001487
HIT000576460 (
ENST00000472064
)
(Chitinase-3-like protein 1; 39 kDa synovial protein; Cartilage glycoprotein 39; CGP-39; GP-39; hCGP-39; YKL-40; Precursor;)
genome : 203,149,126 - 203,151,969 (2,844)
query : 1 - 890 (890/890)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, mito 8, extr 3, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001487)
HIX0001488
HIT000588664 (
ENST00000484834
)
(Acidic mammalian chitinase isoform b.)
genome : 203,181,955 - 203,241,937 (59,983)
query : 1 - 5,607 (5,607/5,607)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.2.1.14
KEGG pathway :
00520 : Amino sugar and nucleotide sugar metabolism (92)
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 13, cyto 8.5, cyto_nucl 8.5, nucl 5.5, pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001488)
HIX0001488
HIT000050364
(
AK131093
)
(Acidic mammalian chitinase isoform b.)
genome : 203,181,959 - 203,241,937 (59,979)
query : 1 - 5,602 (5,602/5,602)
12 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.999)5'
coverage = 1.000
EC number :
EC 3.2.1.14
KEGG pathway :
00520 : Amino sugar and nucleotide sugar metabolism (92)
InterPro :
IPR001223 : Glycoside hydrolase, family 18, catalytic domain
IPR011583 : Chitinase II
IPR013781 : Glycoside hydrolase, catalytic domain
IPR017853 : Glycoside hydrolase superfamily
IPR029070 : Chitinase insertion domain
GO :
0004553 : Molecular Function : hydrolase activity, hydrolyzing O-glycosyl compounds
0004568 : Molecular Function : chitinase activity
0005975 : Biological Process : carbohydrate metabolic process
0006032 : Biological Process : chitin catabolic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 13, cyto 8.5, cyto_nucl 8.5, nucl 5.5, pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001488)
HIX0001488
HIT000583547 (
ENST00000479483
)
(Chitotriosidase-1; EC=3.2.1.14; Chitinase-1; Precursor;)
genome : 203,181,963 - 203,187,149 (5,187)
query : 1 - 494 (494/494)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.2.1.14
KEGG pathway :
00520 : Amino sugar and nucleotide sugar metabolism (92)
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, nucl 5, mito 5, mito_nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001488)
HIX0001488
HIT000200290 (
NM_003465
)
(Chitotriosidase-1; EC=3.2.1.14; Chitinase-1; Precursor;)
genome : 203,185,207 - 203,198,860 (13,654)
query : 1 - 2,307 (2,307/2,325)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.2.1.14
KEGG pathway :
00520 : Amino sugar and nucleotide sugar metabolism (92)
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 28, pero 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001488)
HIX0001488
HIT000723514 (
NM_001256125
)
(Chitotriosidase-1 isoform 2 precursor.)
genome : 203,185,207 - 203,198,860 (13,654)
query : 1 - 2,250 (2,250/2,268)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.2.1.14
KEGG pathway :
00520 : Amino sugar and nucleotide sugar metabolism (92)
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 28, pero 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001488)
HIX0001488
HIT000724748 (
NM_001270509
)
(Chitotriosidase-1 isoform 3 precursor.)
genome : 203,185,207 - 203,198,860 (13,654)
query : 1 - 2,172 (2,172/2,190)
11 exons
identity = 0.997
3'(1.000;1.000;1.000;1.000;1.000;1.000;0.957;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.2.1.14
KEGG pathway :
00520 : Amino sugar and nucleotide sugar metabolism (92)
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 28, pero 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001488)
HIX0001488
HIT000726421 (
NR_045784
)
(Chitotriosidase-1; EC=3.2.1.14; Chitinase-1; Precursor;)
genome : 203,185,207 - 203,198,860 (13,654)
query : 1 - 2,535 (2,535/2,553)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.2.1.14
KEGG pathway :
00520 : Amino sugar and nucleotide sugar metabolism (92)
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 25, E.R. 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001488)
HIX0001488
HIT000726422 (
NR_045785
)
(Chitotriosidase-1; EC=3.2.1.14; Chitinase-1; Precursor;)
genome : 203,185,207 - 203,198,860 (13,654)
query : 1 - 2,378 (2,378/2,396)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.2.1.14
KEGG pathway :
00520 : Amino sugar and nucleotide sugar metabolism (92)
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 21, E.R. 5, pero 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001488)
HIX0001488
HIT000348509 (
ENST00000367229
)
(Chitotriosidase-1; EC=3.2.1.14; Chitinase-1; Precursor;)
genome : 203,185,207 - 203,198,799 (13,593)
query : 1 - 2,246 (2,246/2,246)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.2.1.14
KEGG pathway :
00520 : Amino sugar and nucleotide sugar metabolism (92)
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 28, pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001488)
HIX0001488
HIT000384375
(
AK225245
)
Representative transcript
(Chitotriosidase-1 isoform 3 precursor.)
genome : 203,185,796 - 203,198,800 (13,005)
query : 1 - 1,523 (1,523/1,547)
11 exons
identity = 0.996
3'(1.000;1.000;1.000;1.000;1.000;1.000;0.957;
1.000;1.000;1.000;1.000)5'
coverage = 0.999
EC number :
EC 3.2.1.14
KEGG pathway :
00520 : Amino sugar and nucleotide sugar metabolism (92)
InterPro :
IPR001223 : Glycoside hydrolase, family 18, catalytic domain
IPR001579 : Glycoside hydrolase, chitinase active site
IPR002557 : Chitin binding domain
IPR011583 : Chitinase II
IPR013781 : Glycoside hydrolase, catalytic domain
IPR017853 : Glycoside hydrolase superfamily
IPR029070 : Chitinase insertion domain
GO :
0004553 : Molecular Function : hydrolase activity, hydrolyzing O-glycosyl compounds
0004568 : Molecular Function : chitinase activity
0005576 : Cellular Component : extracellular region
0005975 : Biological Process : carbohydrate metabolic process
0006030 : Biological Process : chitin metabolic process
0006032 : Biological Process : chitin catabolic process
0008061 : Molecular Function : chitin binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 28, pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001488)
HIX0001488
HIT000220731
(
U62662
)
(Chitotriosidase-1; EC=3.2.1.14; Chitinase-1; Precursor;)
genome : 203,185,798 - 203,198,773 (12,976)
query : 1 - 1,697 (1,697/1,710)
12 exons
identity = 0.998
3'(0.994;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.999
EC number :
EC 3.2.1.14
KEGG pathway :
00520 : Amino sugar and nucleotide sugar metabolism (92)
InterPro :
IPR001223 : Glycoside hydrolase, family 18, catalytic domain
IPR001579 : Glycoside hydrolase, chitinase active site
IPR011583 : Chitinase II
IPR013781 : Glycoside hydrolase, catalytic domain
IPR017853 : Glycoside hydrolase superfamily
IPR029070 : Chitinase insertion domain
GO :
0004553 : Molecular Function : hydrolase activity, hydrolyzing O-glycosyl compounds
0004568 : Molecular Function : chitinase activity
0005975 : Biological Process : carbohydrate metabolic process
0006032 : Biological Process : chitin catabolic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 20, mito 7, lyso 2, golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001488)
HIX0001488
HIT000218980
(
U29615
)
(Chitotriosidase-1; EC=3.2.1.14; Chitinase-1; Precursor;)
genome : 203,185,795 - 203,198,776 (12,982)
query : 1 - 1,632 (1,632/1,633)
11 exons
identity = 0.998
3'(0.994;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 0.999
EC number :
EC 3.2.1.14
KEGG pathway :
00520 : Amino sugar and nucleotide sugar metabolism (92)
InterPro :
IPR001223 : Glycoside hydrolase, family 18, catalytic domain
IPR001579 : Glycoside hydrolase, chitinase active site
IPR002557 : Chitin binding domain
IPR011583 : Chitinase II
IPR013781 : Glycoside hydrolase, catalytic domain
IPR017853 : Glycoside hydrolase superfamily
IPR029070 : Chitinase insertion domain
GO :
0004553 : Molecular Function : hydrolase activity, hydrolyzing O-glycosyl compounds
0004568 : Molecular Function : chitinase activity
0005576 : Cellular Component : extracellular region
0005975 : Biological Process : carbohydrate metabolic process
0006030 : Biological Process : chitin metabolic process
0006032 : Biological Process : chitin catabolic process
0008061 : Molecular Function : chitin binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 16, mito 6, lyso 5, pero 3, mito_nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001488)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AY458654
Danio
sp. (Zebrafish) : BC046004
Danio
sp. (Zebrafish) : BC065893
Gallus
sp. (Chicken) : CR407360
Rattus
sp. (Rat) : DQ286232
Equus
sp. (Horse) : EF694759
Bos
sp. (Cow) : ENSBTAT00000048813
Macaca
sp. (Macaque) : ENSMMUT00000045083
Oryzias
sp. (Medaka) : ENSORLT00000013259
Oryzias
sp. (Medaka) : ENSORLT00000013330
Oryzias
sp. (Medaka) : ENSORLT00000017136
Pongo
sp. (Orangutan) : ENSPPYT00000000386
Tetraodon
sp. (Tetraodon) : GSTENT00023605001
Takifugu
sp. (Fugu) : SINFRUT00000157399
Monodelphis
sp. (Opossum) : XM_001369883
Pan
sp. (Chimpanzee) : XM_514111
HIX0001488
HIT000011779
(
AK055165
)
(Chitotriosidase-1; EC=3.2.1.14; Chitinase-1; Precursor;)
genome : 203,185,798 - 203,198,799 (13,002)
query : 2 - 1,599 (1,598/1,599)
10 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 0.999
EC number :
EC 3.2.1.14
KEGG pathway :
00520 : Amino sugar and nucleotide sugar metabolism (92)
InterPro :
IPR001223 : Glycoside hydrolase, family 18, catalytic domain
IPR001579 : Glycoside hydrolase, chitinase active site
IPR002557 : Chitin binding domain
IPR011583 : Chitinase II
IPR013781 : Glycoside hydrolase, catalytic domain
IPR017853 : Glycoside hydrolase superfamily
IPR029070 : Chitinase insertion domain
GO :
0004553 : Molecular Function : hydrolase activity, hydrolyzing O-glycosyl compounds
0004568 : Molecular Function : chitinase activity
0005576 : Cellular Component : extracellular region
0005975 : Biological Process : carbohydrate metabolic process
0006030 : Biological Process : chitin metabolic process
0006032 : Biological Process : chitin catabolic process
0008061 : Molecular Function : chitin binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 28, pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001488)
HIX0001488
HIT000106808 (
ENST00000255427
)
(Chitotriosidase-1 isoform 2 precursor.)
genome : 203,185,798 - 203,198,799 (13,002)
query : 1 - 1,598 (1,598/1,598)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.2.1.14
KEGG pathway :
00520 : Amino sugar and nucleotide sugar metabolism (92)
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 28, pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001488)
HIX0001488
HIT000634614 (
ENST00000535569
)
(Chitotriosidase-1 isoform 2 precursor.)
genome : 203,185,798 - 203,198,799 (13,002)
query : 1 - 1,598 (1,598/1,598)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.2.1.14
KEGG pathway :
00520 : Amino sugar and nucleotide sugar metabolism (92)
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 28, pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001488)
HIX0001488
HIT000595368 (
ENST00000491855
)
(Chitotriosidase-1; EC=3.2.1.14; Chitinase-1; Precursor;)
genome : 203,185,798 - 203,198,773 (12,976)
query : 1 - 1,700 (1,700/1,700)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.2.1.14
KEGG pathway :
00520 : Amino sugar and nucleotide sugar metabolism (92)
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 20, mito 7, lyso 2, golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001488)
HIX0001488
HIT000337306
(
BC103695
)
(Chitotriosidase-1; EC=3.2.1.14; Chitinase-1; Precursor;)
genome : 203,185,885 - 203,198,776 (12,892)
query : 1 - 1,545 (1,545/1,545)
11 exons
identity = 0.999
3'(0.997;1.000;1.000;1.000;1.000;1.000;1.000;
0.982;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.2.1.14
KEGG pathway :
00520 : Amino sugar and nucleotide sugar metabolism (92)
InterPro :
IPR001223 : Glycoside hydrolase, family 18, catalytic domain
IPR001579 : Glycoside hydrolase, chitinase active site
IPR002557 : Chitin binding domain
IPR011583 : Chitinase II
IPR013781 : Glycoside hydrolase, catalytic domain
IPR017853 : Glycoside hydrolase superfamily
IPR029070 : Chitinase insertion domain
GO :
0004553 : Molecular Function : hydrolase activity, hydrolyzing O-glycosyl compounds
0004568 : Molecular Function : chitinase activity
0005576 : Cellular Component : extracellular region
0005975 : Biological Process : carbohydrate metabolic process
0006030 : Biological Process : chitin metabolic process
0006032 : Biological Process : chitin catabolic process
0008061 : Molecular Function : chitin binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 19, mito 5, lyso 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001488)
HIX0001488
HIT000386427
(
BC105680
)
(Chitotriosidase-1; EC=3.2.1.14; Chitinase-1; Precursor;)
genome : 203,185,885 - 203,198,776 (12,892)
query : 1 - 1,545 (1,545/1,545)
11 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.982;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.2.1.14
KEGG pathway :
00520 : Amino sugar and nucleotide sugar metabolism (92)
InterPro :
IPR001223 : Glycoside hydrolase, family 18, catalytic domain
IPR001579 : Glycoside hydrolase, chitinase active site
IPR002557 : Chitin binding domain
IPR011583 : Chitinase II
IPR013781 : Glycoside hydrolase, catalytic domain
IPR017853 : Glycoside hydrolase superfamily
IPR029070 : Chitinase insertion domain
GO :
0004553 : Molecular Function : hydrolase activity, hydrolyzing O-glycosyl compounds
0004568 : Molecular Function : chitinase activity
0005576 : Cellular Component : extracellular region
0005975 : Biological Process : carbohydrate metabolic process
0006030 : Biological Process : chitin metabolic process
0006032 : Biological Process : chitin catabolic process
0008061 : Molecular Function : chitin binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 19, mito 5, lyso 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001488)
HIX0001488
HIT000386428
(
BC105681
)
(Chitotriosidase-1; EC=3.2.1.14; Chitinase-1; Precursor;)
genome : 203,185,885 - 203,198,776 (12,892)
query : 1 - 1,545 (1,545/1,545)
11 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.982;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.2.1.14
KEGG pathway :
00520 : Amino sugar and nucleotide sugar metabolism (92)
InterPro :
IPR001223 : Glycoside hydrolase, family 18, catalytic domain
IPR001579 : Glycoside hydrolase, chitinase active site
IPR002557 : Chitin binding domain
IPR011583 : Chitinase II
IPR013781 : Glycoside hydrolase, catalytic domain
IPR017853 : Glycoside hydrolase superfamily
IPR029070 : Chitinase insertion domain
GO :
0004553 : Molecular Function : hydrolase activity, hydrolyzing O-glycosyl compounds
0004568 : Molecular Function : chitinase activity
0005576 : Cellular Component : extracellular region
0005975 : Biological Process : carbohydrate metabolic process
0006030 : Biological Process : chitin metabolic process
0006032 : Biological Process : chitin catabolic process
0008061 : Molecular Function : chitin binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 19, mito 5, lyso 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001488)
HIX0001488
HIT000386429
(
BC105682
)
(Chitotriosidase-1; EC=3.2.1.14; Chitinase-1; Precursor;)
genome : 203,185,885 - 203,198,776 (12,892)
query : 1 - 1,545 (1,545/1,545)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.2.1.14
KEGG pathway :
00520 : Amino sugar and nucleotide sugar metabolism (92)
InterPro :
IPR001223 : Glycoside hydrolase, family 18, catalytic domain
IPR001579 : Glycoside hydrolase, chitinase active site
IPR002557 : Chitin binding domain
IPR011583 : Chitinase II
IPR013781 : Glycoside hydrolase, catalytic domain
IPR017853 : Glycoside hydrolase superfamily
IPR029070 : Chitinase insertion domain
GO :
0004553 : Molecular Function : hydrolase activity, hydrolyzing O-glycosyl compounds
0004568 : Molecular Function : chitinase activity
0005576 : Cellular Component : extracellular region
0005975 : Biological Process : carbohydrate metabolic process
0006030 : Biological Process : chitin metabolic process
0006032 : Biological Process : chitin catabolic process
0008061 : Molecular Function : chitin binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 16, mito 6, lyso 5, pero 3, mito_nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001488)
HIX0001488
HIT000263765
(
BC069614
)
(Chitotriosidase-1; EC=3.2.1.14; Chitinase-1; Precursor;)
genome : 203,185,965 - 203,194,999 (9,035)
query : 20 - 1,418 (1,399/1,418)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 0.987
EC number :
EC 3.2.1.14
KEGG pathway :
00520 : Amino sugar and nucleotide sugar metabolism (92)
InterPro :
IPR001223 : Glycoside hydrolase, family 18, catalytic domain
IPR001579 : Glycoside hydrolase, chitinase active site
IPR002557 : Chitin binding domain
IPR011583 : Chitinase II
IPR013781 : Glycoside hydrolase, catalytic domain
IPR017853 : Glycoside hydrolase superfamily
IPR029070 : Chitinase insertion domain
GO :
0004553 : Molecular Function : hydrolase activity, hydrolyzing O-glycosyl compounds
0004568 : Molecular Function : chitinase activity
0005576 : Cellular Component : extracellular region
0005975 : Biological Process : carbohydrate metabolic process
0006030 : Biological Process : chitin metabolic process
0006032 : Biological Process : chitin catabolic process
0008061 : Molecular Function : chitin binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 11.5, extr 9, E.R._mito 8, cyto 6.5,
cyto_nucl 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001488)
HIX0001488
HIT000433197
(
AK314331
)
(Chitotriosidase-1 isoform 2 precursor.)
genome : 203,186,017 - 203,198,801 (12,785)
query : 1 - 1,436 (1,436/1,436)
11 exons
identity = 0.996
3'(0.992;1.000;1.000;1.000;1.000;1.000;1.000;
0.982;0.990;1.000;0.984)5'
coverage = 1.000
EC number :
EC 3.2.1.14
KEGG pathway :
00520 : Amino sugar and nucleotide sugar metabolism (92)
InterPro :
IPR001223 : Glycoside hydrolase, family 18, catalytic domain
IPR001579 : Glycoside hydrolase, chitinase active site
IPR002557 : Chitin binding domain
IPR011583 : Chitinase II
IPR013781 : Glycoside hydrolase, catalytic domain
IPR017853 : Glycoside hydrolase superfamily
IPR029070 : Chitinase insertion domain
GO :
0004553 : Molecular Function : hydrolase activity, hydrolyzing O-glycosyl compounds
0004568 : Molecular Function : chitinase activity
0005576 : Cellular Component : extracellular region
0005975 : Biological Process : carbohydrate metabolic process
0006030 : Biological Process : chitin metabolic process
0006032 : Biological Process : chitin catabolic process
0008061 : Molecular Function : chitin binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 28, pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001488)
HIX0001488
HIT000428207
(
AK309341
)
(Chitotriosidase-1; EC=3.2.1.14; Chitinase-1; Precursor;)
genome : 203,186,076 - 203,198,799 (12,724)
query : 4 - 1,608 (1,605/1,608)
13 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;0.995;1.000;
1.000;1.000;0.982;1.000;1.000;1.000)5'
coverage = 0.998
EC number :
EC 3.2.1.14
KEGG pathway :
00520 : Amino sugar and nucleotide sugar metabolism (92)
InterPro :
IPR001223 : Glycoside hydrolase, family 18, catalytic domain
IPR001579 : Glycoside hydrolase, chitinase active site
IPR011583 : Chitinase II
IPR013781 : Glycoside hydrolase, catalytic domain
IPR017853 : Glycoside hydrolase superfamily
IPR029070 : Chitinase insertion domain
GO :
0004553 : Molecular Function : hydrolase activity, hydrolyzing O-glycosyl compounds
0004568 : Molecular Function : chitinase activity
0005975 : Biological Process : carbohydrate metabolic process
0006032 : Biological Process : chitin catabolic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 24, E.R. 4, pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001488)
HIX0001488
HIT000604052 (
ENST00000503786
)
(Chitotriosidase-1; EC=3.2.1.14; Chitinase-1; Precursor;)
genome : 203,186,076 - 203,198,799 (12,724)
query : 1 - 1,605 (1,605/1,605)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.2.1.14
KEGG pathway :
00520 : Amino sugar and nucleotide sugar metabolism (92)
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 25, E.R. 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001488)
HIX0001488
HIT000606491 (
ENST00000506427
)
(Chitotriosidase-1; EC=3.2.1.14; Chitinase-1; Precursor;)
genome : 203,188,702 - 203,191,438 (2,737)
query : 1 - 385 (385/385)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.2.1.14
KEGG pathway :
00520 : Amino sugar and nucleotide sugar metabolism (92)
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14.5, nucl 13.5, cyto 12.5, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001488)
HIX0001488
HIT000613041 (
ENST00000513472
)
(Chitotriosidase-1; EC=3.2.1.14; Chitinase-1; Precursor;)
genome : 203,192,716 - 203,229,990 (37,275)
query : 1 - 583 (583/583)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
EC number :
EC 3.2.1.14
KEGG pathway :
00520 : Amino sugar and nucleotide sugar metabolism (92)
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 9.5, mito 8, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001488)
HIX0001488
HIT000565540 (
ENST00000460619
)
(Hypothetical short protein.)
genome : 203,209,458 - 203,242,769 (33,312)
query : 1 - 397 (397/397)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 17.5, cyto 16, nucl 11, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001488)
HIX0160246
HIT000510692 (
ENST00000412758
)
(Nucleoplasmin core domain containing protein.)
genome : 203,224,871 - 203,225,603 (733)
query : 1 - 733 (733/733)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 9.5, mito 7, extr 5, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0160246)
HIX0159774
HIT000510706 (
ENST00000412772
)
(Hypothetical short protein.)
genome : 203,256,280 - 203,257,929 (1,650)
query : 1 - 775 (775/775)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 13.5, nucl 11.5, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159774)
HIX0159774
HIT000530942 (
ENST00000433008
)
(Hypothetical short protein.)
genome : 203,256,898 - 203,257,662 (765)
query : 1 - 354 (354/354)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159774)
HIX0022100
HIT000659286 (
NR_034150
)
(Conserved hypothetical protein.)
genome : 203,267,886 - 203,274,453 (6,568)
query : 1 - 2,555 (2,555/2,555)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, cyto_nucl 10.8333, mito 7, extr 6, cyto 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022100)
HIX0022100
HIT000659287 (
NR_034151
)
(Conserved hypothetical protein.)
genome : 203,267,886 - 203,274,453 (6,568)
query : 1 - 2,741 (2,741/2,741)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, mito 7, cyto 5.5, cyto_nucl 5.16667,
cyto_pero 4.33333
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022100)
HIX0022100
HIT000007567
(
AK024293
)
(Conserved hypothetical protein.)
genome : 203,267,886 - 203,274,437 (6,552)
query : 1 - 2,551 (2,551/2,551)
3 exons
identity = 0.994
3'(0.993;1.000;0.996)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, cyto_nucl 10.8333, mito 7, extr 6, cyto 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022100)
HIX0022100
HIT000555282 (
ENST00000457348
)
(Conserved hypothetical protein.)
genome : 203,267,886 - 203,274,437 (6,552)
query : 1 - 2,539 (2,539/2,539)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022100)
HIX0022100
HIT000428530
(
AK309664
)
Representative transcript
(Hypothetical short protein.)
genome : 203,269,535 - 203,274,437 (4,903)
query : 1 - 1,076 (1,076/1,076)
4 exons
identity = 0.998
3'(1.000;1.000;0.995;0.998)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, mito 7, cyto 5.5, cyto_nucl 5.16667,
cyto_pero 4.33333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022100)
HIX0022100
HIT000523632 (
ENST00000425698
)
(Non-protein coding transcript.)
genome : 203,269,642 - 203,273,676 (4,035)
query : 1 - 355 (355/355)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022100)
HIX0022100
HIT000530445 (
ENST00000432511
)
(Non-protein coding transcript.)
genome : 203,270,294 - 203,274,387 (4,094)
query : 1 - 505 (505/505)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022100)
HIX0028809
HIT000579413 (
ENST00000475157
)
(Anti-proliferative protein domain containing protein.)
genome : 203,274,619 - 203,278,697 (4,079)
query : 1 - 1,275 (1,275/1,275)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto 6, lyso 3, cyto_pero 3, cyto_plas 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028809)
HIX0028809
HIT000203337 (
NM_006763
)
(Anti-proliferative protein domain containing protein.)
genome : 203,274,664 - 203,278,730 (4,067)
query : 1 - 2,712 (2,712/2,718)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto 6, lyso 3, cyto_pero 3, cyto_plas 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028809)
HIX0028809
HIT000221189
(
U72649
)
Representative transcript
(Anti-proliferative protein domain containing protein.)
genome : 203,274,664 - 203,278,730 (4,067)
query : 1 - 2,711 (2,711/2,717)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 0.998
InterPro :
IPR002087 : Anti-proliferative protein
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto 6, lyso 3, cyto_pero 3, cyto_plas 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028809)
HIX0028809
HIT000113303 (
ENST00000290551
)
(Anti-proliferative protein domain containing protein.)
genome : 203,274,664 - 203,278,730 (4,067)
query : 1 - 2,712 (2,712/2,712)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto 6, lyso 3, cyto_pero 3, cyto_plas 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028809)
HIX0028809
HIT000325549
(
Y09943
)
(Anti-proliferative protein domain containing protein.)
genome : 203,274,673 - 203,276,824 (2,152)
query : 1 - 796 (796/796)
2 exons
identity = 0.996
5'(0.995;0.997)3'
coverage = 1.000
InterPro :
IPR002087 : Anti-proliferative protein
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto 6, lyso 3, cyto_pero 3, cyto_plas 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028809)
HIX0028809
HIT000338321
(
BC105949
)
(Anti-proliferative protein domain containing protein.)
genome : 203,274,690 - 203,277,474 (2,785)
query : 1 - 1,429 (1,429/1,429)
2 exons
identity = 0.999
5'(1.000;0.999)3'
coverage = 1.000
InterPro :
IPR002087 : Anti-proliferative protein
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto 6, lyso 3, cyto_pero 3, cyto_plas 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028809)
HIX0028809
HIT000338320
(
BC105948
)
(Anti-proliferative protein domain containing protein.)
genome : 203,274,690 - 203,277,473 (2,784)
query : 1 - 1,428 (1,428/1,428)
2 exons
identity = 0.999
5'(1.000;0.999)3'
coverage = 1.000
InterPro :
IPR002087 : Anti-proliferative protein
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto 6, lyso 3, cyto_pero 3, cyto_plas 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028809)
HIX0001489
HIT000051359
(
BC035281
)
Representative transcript
(Fibromodulin; FM; Collagen-binding 59 kDa protein; Keratan sulfate proteoglycan fibromodulin; KSPG fibromodulin; Precursor;)
genome : 203,309,756 - 203,320,234 (10,479)
query : 1 - 2,926 (2,926/2,969)
3 exons
identity = 0.999
3'(0.998;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR001611 : Leucine-rich repeat
IPR003591 : Leucine-rich repeat, typical subtype
IPR027215 : Fibromodulin
GO :
0005515 : Molecular Function : protein binding
0005578 : Cellular Component : proteinaceous extracellular matrix
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 28, lyso 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001489)
Ortholog candidate ( ->
Evola
)
Equus
sp. (Horse) : AB292249
Mus
sp. (Mouse) : AK032302
Danio
sp. (Zebrafish) : BC096939
Bos
sp. (Cow) : BT030742
Gallus
sp. (Chicken) : ENSGALT00000005608
Monodelphis
sp. (Opossum) : ENSMODT00000001331
Oryzias
sp. (Medaka) : ENSORLT00000019667
Pongo
sp. (Orangutan) : ENSPPYT00000000384
Tetraodon
sp. (Tetraodon) : GSTENT00014014001
Tetraodon
sp. (Tetraodon) : GSTENT00033241001
Takifugu
sp. (Fugu) : SINFRUT00000133690
Rattus
sp. (Rat) : X82152
Macaca
sp. (Macaque) : XM_001102658
Pan
sp. (Chimpanzee) : XM_514114
Canis
sp. (Dog) : XM_545677
HIX0001489
HIT000198948 (
NM_002023
)
(Fibromodulin; FM; Collagen-binding 59 kDa protein; Keratan sulfate proteoglycan fibromodulin; KSPG fibromodulin; Precursor;)
genome : 203,309,752 - 203,320,289 (10,538)
query : 1 - 2,986 (2,986/3,005)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 28, lyso 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001489)
HIX0001489
HIT000017766
(
AK092899
)
(Fibromodulin; FM; Collagen-binding 59 kDa protein; Keratan sulfate proteoglycan fibromodulin; KSPG fibromodulin; Precursor;)
genome : 203,309,753 - 203,320,227 (10,475)
query : 1 - 2,714 (2,714/2,714)
4 exons
identity = 0.999
3'(0.999;1.000;0.992;1.000)5'
coverage = 1.000
InterPro :
IPR001611 : Leucine-rich repeat
IPR003591 : Leucine-rich repeat, typical subtype
IPR027215 : Fibromodulin
GO :
0005515 : Molecular Function : protein binding
0005578 : Cellular Component : proteinaceous extracellular matrix
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001489)
HIX0001489
HIT000569621 (
ENST00000464898
)
(Fibromodulin; FM; Collagen-binding 59 kDa protein; Keratan sulfate proteoglycan fibromodulin; KSPG fibromodulin; Precursor;)
genome : 203,309,753 - 203,320,227 (10,475)
query : 1 - 2,714 (2,714/2,714)
4 exons
identity = 0.999
3'(1.000;1.000;0.992;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001489)
HIX0001489
HIT000309171 (
ENST00000354955
)
(Fibromodulin; FM; Collagen-binding 59 kDa protein; Keratan sulfate proteoglycan fibromodulin; KSPG fibromodulin; Precursor;)
genome : 203,309,756 - 203,320,617 (10,862)
query : 1 - 3,310 (3,310/3,310)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 28, lyso 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001489)
HIX0001489
HIT000249903
(
AK172740
)
(Fibromodulin; FM; Collagen-binding 59 kDa protein; Keratan sulfate proteoglycan fibromodulin; KSPG fibromodulin; Precursor;)
genome : 203,309,757 - 203,320,250 (10,494)
query : 1 - 1,818 (1,818/1,818)
4 exons
identity = 0.965
3'(0.986;0.997;0.943;1.000)5'
coverage = 1.000
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR001611 : Leucine-rich repeat
IPR003591 : Leucine-rich repeat, typical subtype
IPR027215 : Fibromodulin
GO :
0005515 : Molecular Function : protein binding
0005578 : Cellular Component : proteinaceous extracellular matrix
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14.5, nucl 12.5, cyto 11.5, extr 3, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001489)
HIX0001489
HIT000217582
(
U05291
)
(Fibromodulin; FM; Collagen-binding 59 kDa protein; Keratan sulfate proteoglycan fibromodulin; KSPG fibromodulin; Precursor;)
genome : 203,309,757 - 203,316,445 (6,689)
query : 1 - 1,892 (1,892/1,892)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
InterPro :
IPR027215 : Fibromodulin
GO :
0005578 : Cellular Component : proteinaceous extracellular matrix
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 10.5, extr 10, cyto 9.5, nucl 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001489)
HIX0028648
HIT000023152
(
AK098322
)
Representative transcript
(Hypothetical protein.)
genome : 203,309,757 - 203,313,712 (3,956)
query : 1 - 2,323 (2,323/2,323)
2 exons
identity = 0.997
5'(0.999;0.994)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto_nucl 10.5, nucl 10, cyto 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028648)
HIX0001489
HIT000596741 (
ENST00000493296
)
(Fibromodulin; FM; Collagen-binding 59 kDa protein; Keratan sulfate proteoglycan fibromodulin; KSPG fibromodulin; Precursor;)
genome : 203,310,465 - 203,320,216 (9,752)
query : 1 - 717 (717/717)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto 10, mito 5, cyto_pero 5, cyto_plas 5,
cyto_golg 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001489)
HIX0001489
HIT000424429
(
AK291632
)
(Fibromodulin; FM; Collagen-binding 59 kDa protein; Keratan sulfate proteoglycan fibromodulin; KSPG fibromodulin; Precursor;)
genome : 203,310,548 - 203,320,223 (9,676)
query : 1 - 2,124 (2,124/2,124)
3 exons
identity = 1.000
3'(1.000;0.999;1.000)5'
coverage = 1.000
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR001611 : Leucine-rich repeat
IPR003591 : Leucine-rich repeat, typical subtype
IPR027215 : Fibromodulin
GO :
0005515 : Molecular Function : protein binding
0005578 : Cellular Component : proteinaceous extracellular matrix
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 28, lyso 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001489)
HIX0001489
HIT000498490
(
AK303866
)
(Fibromodulin; FM; Collagen-binding 59 kDa protein; Keratan sulfate proteoglycan fibromodulin; KSPG fibromodulin; Precursor;)
genome : 203,311,259 - 203,320,223 (8,965)
query : 1 - 1,371 (1,371/1,371)
4 exons
identity = 0.999
3'(1.000;0.999;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001611 : Leucine-rich repeat
IPR003591 : Leucine-rich repeat, typical subtype
IPR027215 : Fibromodulin
GO :
0005515 : Molecular Function : protein binding
0005578 : Cellular Component : proteinaceous extracellular matrix
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001489)
HIX0001489
HIT000566797 (
ENST00000461936
)
(Fibromodulin; FM; Collagen-binding 59 kDa protein; Keratan sulfate proteoglycan fibromodulin; KSPG fibromodulin; Precursor;)
genome : 203,311,311 - 203,320,214 (8,904)
query : 1 - 366 (366/366)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto 10, mito 5, cyto_pero 5, cyto_plas 5,
cyto_golg 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001489)
HIX0001489
HIT000323531
(
X75546
)
(Fibromodulin; FM; Collagen-binding 59 kDa protein; Keratan sulfate proteoglycan fibromodulin; KSPG fibromodulin; Precursor;)
genome : 203,311,372 - 203,317,403 (6,032)
query : 16 - 1,247 (1,232/1,247)
2 exons
identity = 0.987
3'(0.952;0.996)5'
coverage = 0.988
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR001611 : Leucine-rich repeat
IPR003591 : Leucine-rich repeat, typical subtype
IPR027215 : Fibromodulin
GO :
0005515 : Molecular Function : protein binding
0005578 : Cellular Component : proteinaceous extracellular matrix
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001489)
HIX0160055
HIT000362635 (
ENST00000381357
)
(Conserved hypothetical protein.)
genome : 203,322,493 - 203,322,779 (287)
query : 1 - 287 (287/287)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, mito 7, extr 2, cyto 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0160055)
HIX0203630
HIT000455367_12
(
DQ588836
)
Representative transcript
(Non-protein coding transcript.)
genome : 203,380,915 - 203,380,944 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0203630)
HIX0001491
HIT000199602 (
NM_002725
)
(Prolargin; Proline-arginine-rich end leucine-rich repeat protein; Precursor;)
genome : 203,444,883 - 203,460,478 (15,596)
query : 1 - 5,818 (5,818/5,833)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 8, mito 8, E.R. 5, pero 5, lyso 2, golg 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001491)
HIX0001491
HIT000319806 (
NM_201348
)
(Prolargin; Proline-arginine-rich end leucine-rich repeat protein; Precursor;)
genome : 203,444,883 - 203,460,478 (15,596)
query : 1 - 5,808 (5,808/5,823)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 8, mito 8, E.R. 5, pero 5, lyso 2, golg 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001491)
HIX0001491
HIT000218950
(
U29089
)
Representative transcript
(Prolargin; Proline-arginine-rich end leucine-rich repeat protein; Precursor;)
genome : 203,444,956 - 203,456,289 (11,334)
query : 2 - 1,557 (1,556/1,560)
3 exons
identity = 0.999
5'(1.000;1.000;0.996)3'
coverage = 0.997
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR001611 : Leucine-rich repeat
IPR027216 : Prolargin
GO :
0005201 : Molecular Function : extracellular matrix structural constituent
0005515 : Molecular Function : protein binding
0005578 : Cellular Component : proteinaceous extracellular matrix
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 8, mito 8, E.R. 5, pero 5, lyso 2, golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001491)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB174642
Rattus
sp. (Rat) : AF163569
Mus
sp. (Mouse) : AK037150
Bos
sp. (Cow) : BC149945
Danio
sp. (Zebrafish) : CU468791
Equus
sp. (Horse) : ENSECAT00000019131
Monodelphis
sp. (Opossum) : ENSMODT00000001341
Oryzias
sp. (Medaka) : ENSORLT00000019684
Pongo
sp. (Orangutan) : ENSPPYT00000000383
Pan
sp. (Chimpanzee) : ENSPTRT00000042963
Tetraodon
sp. (Tetraodon) : GSTENT00020801001
Takifugu
sp. (Fugu) : SINFRUT00000167889
Gallus
sp. (Chicken) : XM_418054
Canis
sp. (Dog) : XM_545678
HIX0001491
HIT000135740 (
ENST00000343110
)
(Prolargin; Proline-arginine-rich end leucine-rich repeat protein; Precursor;)
genome : 203,444,956 - 203,460,480 (15,525)
query : 1 - 5,747 (5,747/5,747)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 8, mito 8, E.R. 5, pero 5, lyso 2, golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001491)
HIX0001491
HIT000041569
(
BC032498
)
(Prolargin; Proline-arginine-rich end leucine-rich repeat protein; Precursor;)
genome : 203,444,965 - 203,456,291 (11,327)
query : 1 - 1,549 (1,549/1,640)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR001611 : Leucine-rich repeat
IPR027216 : Prolargin
GO :
0005201 : Molecular Function : extracellular matrix structural constituent
0005515 : Molecular Function : protein binding
0005578 : Cellular Component : proteinaceous extracellular matrix
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 8, mito 8, E.R. 5, pero 5, lyso 2, golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001491)
HIX0001491
HIT000269138
(
CR542270
)
(Prolargin; Proline-arginine-rich end leucine-rich repeat protein; Precursor;)
genome : 203,452,313 - 203,456,009 (3,697)
query : 1 - 1,149 (1,149/1,149)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR001611 : Leucine-rich repeat
IPR027216 : Prolargin
GO :
0005201 : Molecular Function : extracellular matrix structural constituent
0005515 : Molecular Function : protein binding
0005578 : Cellular Component : proteinaceous extracellular matrix
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 8, mito 8, E.R. 5, pero 5, lyso 2, golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001491)
HIX0001491
HIT000268658
(
CR541787
)
(Prolargin; Proline-arginine-rich end leucine-rich repeat protein; Precursor;)
genome : 203,452,313 - 203,456,006 (3,694)
query : 1 - 1,146 (1,146/1,146)
2 exons
identity = 0.999
5'(0.999;1.000)3'
coverage = 1.000
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR001611 : Leucine-rich repeat
IPR027216 : Prolargin
GO :
0005201 : Molecular Function : extracellular matrix structural constituent
0005515 : Molecular Function : protein binding
0005578 : Cellular Component : proteinaceous extracellular matrix
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 9, extr 7, E.R._mito 7, mito_pero 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001491)
HIX0001490
HIT000023075
(
AK098245
)
Representative transcript
(Conserved hypothetical protein.)
genome : 203,458,364 - 203,460,473 (2,110)
query : 1 - 2,110 (2,110/2,110)
1 exon
identity = 0.998
3'(0.998)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, cyto_nucl 6.5, nucl 6, cyto 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001490)
HIX0028570
HIT000204739 (
NM_014359
)
(Opticin; Oculoglycan; Precursor;)
genome : 203,463,271 - 203,478,077 (14,807)
query : 1 - 1,444 (1,444/1,444)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, lyso 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028570)
HIX0028570
HIT000084203
(
AY077681
)
Representative transcript
(Opticin; Oculoglycan; Precursor;)
genome : 203,463,271 - 203,477,992 (14,722)
query : 1 - 1,359 (1,359/1,359)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR001611 : Leucine-rich repeat
IPR003591 : Leucine-rich repeat, typical subtype
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, lyso 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028570)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK153750
Canis
sp. (Dog) : AY048585
Gallus
sp. (Chicken) : AY156089
Bos
sp. (Cow) : AY249537
Danio
sp. (Zebrafish) : BC078270
Equus
sp. (Horse) : ENSECAT00000019332
Pongo
sp. (Orangutan) : ENSPPYT00000000382
Tetraodon
sp. (Tetraodon) : GSTENT00020800001
Takifugu
sp. (Fugu) : SINFRUT00000160741
Rattus
sp. (Rat) : XM_001061460
Macaca
sp. (Macaque) : XM_001102193
Pan
sp. (Chimpanzee) : XM_001155649
Monodelphis
sp. (Opossum) : XM_001370115
HIX0028570
HIT000244782
(
AJ133790
)
(Opticin; Oculoglycan; Precursor;)
genome : 203,463,271 - 203,477,992 (14,722)
query : 1 - 1,359 (1,359/1,359)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR001611 : Leucine-rich repeat
IPR003591 : Leucine-rich repeat, typical subtype
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, lyso 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028570)
HIX0028570
HIT000348502 (
ENST00000367222
)
(Opticin; Oculoglycan; Precursor;)
genome : 203,463,271 - 203,477,992 (14,722)
query : 1 - 1,359 (1,359/1,359)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, lyso 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028570)
HIX0028570
HIT000072194
(
AF161702
)
(Opticin; Oculoglycan; Precursor;)
genome : 203,463,294 - 203,477,993 (14,700)
query : 1 - 1,337 (1,337/1,369)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 0.999
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR001611 : Leucine-rich repeat
IPR003591 : Leucine-rich repeat, typical subtype
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, lyso 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028570)
HIX0028570
HIT000546845 (
ENST00000448911
)
(Opticin; Oculoglycan; Precursor;)
genome : 203,465,098 - 203,468,837 (3,740)
query : 1 - 560 (560/560)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028570)
HIX0028570
HIT000265449
(
BC074942
)
(Opticin; Oculoglycan; Precursor;)
genome : 203,465,100 - 203,472,875 (7,776)
query : 1 - 1,060 (1,060/1,069)
6 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;0.990;1.000)3'
coverage = 0.992
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR001611 : Leucine-rich repeat
IPR003591 : Leucine-rich repeat, typical subtype
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, lyso 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028570)
HIX0028570
HIT000265450
(
BC074943
)
(Opticin; Oculoglycan; Precursor;)
genome : 203,465,100 - 203,472,875 (7,776)
query : 1 - 1,060 (1,060/1,069)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.992
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR001611 : Leucine-rich repeat
IPR003591 : Leucine-rich repeat, typical subtype
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, lyso 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028570)
HIX0023651
HIT000054259
(
BX537444
)
(Plasma membrane calcium-transporting ATPase 4; PMCA4; EC=3.6.3.8; Matrix-remodeling-associated protein 1; Plasma membrane calcium ATPase isoform 4; Plasma membrane calcium pump isoform 4;)
genome : 203,595,689 - 203,713,209 (117,521)
query : 2 - 8,969 (8,968/8,992)
21 exons
identity = 0.998
5'(0.997;0.991;0.990;1.000;1.000;1.000;1.000;
1.000;1.000;0.996;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.999)3'
coverage = 0.999
EC number :
EC 3.6.3.8
InterPro :
IPR001757 : P-type ATPase
IPR004014 : Cation-transporting P-type ATPase, N-terminal
IPR006068 : Cation-transporting P-type ATPase, C-terminal
IPR006408 : P-type ATPase, subfamily IIB
IPR008250 : P-type ATPase, A domain
IPR018303 : P-type ATPase, phosphorylation site
IPR022141 : Plasma membrane calcium transporting P-type ATPase, C-terminal
IPR023214 : HAD-like domain
IPR023298 : P-type ATPase, transmembrane domain
IPR023299 : P-type ATPase, cytoplasmic domain N
GO :
0000166 : Molecular Function : nucleotide binding
0005388 : Molecular Function : calcium-transporting ATPase activity
0005524 : Molecular Function : ATP binding
0006812 : Biological Process : cation transport
0016020 : Cellular Component : membrane
0016021 : Cellular Component : integral component of membrane
0019829 : Molecular Function : cation-transporting ATPase activity
0046872 : Molecular Function : metal ion binding
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023651)
HIX0023651
HIT000311499 (
ENST00000357681
)
(Plasma membrane calcium-transporting ATPase 4; PMCA4; EC=3.6.3.8; Matrix-remodeling-associated protein 1; Plasma membrane calcium ATPase isoform 4; Plasma membrane calcium pump isoform 4;)
genome : 203,595,689 - 203,713,209 (117,521)
query : 1 - 8,968 (8,968/8,968)
21 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.6.3.8
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023651)
HIX0023651
HIT000198623 (
NM_001684
)
(Plasma membrane calcium-transporting ATPase 4; PMCA4; EC=3.6.3.8; Matrix-remodeling-associated protein 1; Plasma membrane calcium ATPase isoform 4; Plasma membrane calcium pump isoform 4;)
genome : 203,595,915 - 203,713,208 (117,294)
query : 1 - 8,741 (8,741/8,753)
21 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.6.3.8
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023651)
HIX0023651
HIT000315374 (
NM_001001396
)
(Plasma membrane calcium-transporting ATPase 4; PMCA4; EC=3.6.3.8; Matrix-remodeling-associated protein 1; Plasma membrane calcium ATPase isoform 4; Plasma membrane calcium pump isoform 4;)
genome : 203,595,915 - 203,713,208 (117,294)
query : 1 - 8,919 (8,919/8,931)
22 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
EC number :
EC 3.6.3.8
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023651)
HIX0023651
HIT000348498 (
ENST00000367218
)
(Plasma membrane calcium-transporting ATPase 4; PMCA4; EC=3.6.3.8; Matrix-remodeling-associated protein 1; Plasma membrane calcium ATPase isoform 4; Plasma membrane calcium pump isoform 4;)
genome : 203,595,928 - 203,713,207 (117,280)
query : 1 - 8,905 (8,905/8,905)
22 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
EC number :
EC 3.6.3.8
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023651)
HIX0023651
HIT000348499 (
ENST00000367219
)
(Plasma membrane calcium-transporting ATPase 4 isoform 4a.)
genome : 203,595,928 - 203,713,207 (117,280)
query : 1 - 8,869 (8,869/8,869)
21 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.6.3.8
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023651)
HIX0023651
HIT000475449 (
ENST00000391954
)
(Plasma membrane calcium-transporting ATPase 4 isoform 4b.)
genome : 203,595,928 - 203,713,207 (117,280)
query : 1 - 8,797 (8,797/8,797)
21 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.6.3.8
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023651)
HIX0023651
HIT000306981
(
CR936708
)
(Plasma membrane calcium-transporting ATPase 4; PMCA4; EC=3.6.3.8; Matrix-remodeling-associated protein 1; Plasma membrane calcium ATPase isoform 4; Plasma membrane calcium pump isoform 4;)
genome : 203,595,961 - 203,713,206 (117,246)
query : 1 - 8,691 (8,691/8,711)
21 exons
identity = 0.998
5'(0.995;0.989;0.995;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.996;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.999)3'
coverage = 1.000
EC number :
EC 3.6.3.8
InterPro :
IPR001757 : P-type ATPase
IPR004014 : Cation-transporting P-type ATPase, N-terminal
IPR006068 : Cation-transporting P-type ATPase, C-terminal
IPR006408 : P-type ATPase, subfamily IIB
IPR008250 : P-type ATPase, A domain
IPR018303 : P-type ATPase, phosphorylation site
IPR022141 : Plasma membrane calcium transporting P-type ATPase, C-terminal
IPR023214 : HAD-like domain
IPR023298 : P-type ATPase, transmembrane domain
IPR023299 : P-type ATPase, cytoplasmic domain N
GO :
0000166 : Molecular Function : nucleotide binding
0005388 : Molecular Function : calcium-transporting ATPase activity
0005524 : Molecular Function : ATP binding
0006812 : Biological Process : cation transport
0016020 : Cellular Component : membrane
0016021 : Cellular Component : integral component of membrane
0019829 : Molecular Function : cation-transporting ATPase activity
0046872 : Molecular Function : metal ion binding
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023651)
HIX0023651
HIT000306429
(
CR749393
)
(Plasma membrane calcium-transporting ATPase 4; PMCA4; EC=3.6.3.8; Matrix-remodeling-associated protein 1; Plasma membrane calcium ATPase isoform 4; Plasma membrane calcium pump isoform 4;)
genome : 203,595,986 - 203,713,208 (117,223)
query : 2 - 8,670 (8,669/8,687)
21 exons
identity = 0.997
5'(1.000;0.991;1.000;1.000;0.984;1.000;1.000;
1.000;0.995;1.000;0.996;1.000;0.994;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.997)3'
coverage = 1.000
EC number :
EC 3.6.3.8
InterPro :
IPR001757 : P-type ATPase
IPR004014 : Cation-transporting P-type ATPase, N-terminal
IPR006068 : Cation-transporting P-type ATPase, C-terminal
IPR006408 : P-type ATPase, subfamily IIB
IPR008250 : P-type ATPase, A domain
IPR018303 : P-type ATPase, phosphorylation site
IPR022141 : Plasma membrane calcium transporting P-type ATPase, C-terminal
IPR023214 : HAD-like domain
IPR023298 : P-type ATPase, transmembrane domain
IPR023299 : P-type ATPase, cytoplasmic domain N
GO :
0000166 : Molecular Function : nucleotide binding
0005388 : Molecular Function : calcium-transporting ATPase activity
0005524 : Molecular Function : ATP binding
0006812 : Biological Process : cation transport
0016020 : Cellular Component : membrane
0016021 : Cellular Component : integral component of membrane
0019829 : Molecular Function : cation-transporting ATPase activity
0046872 : Molecular Function : metal ion binding
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023651)
HIX0023651
HIT000501527
(
BC140774
)
Representative transcript
(Plasma membrane calcium-transporting ATPase 4; PMCA4; EC=3.6.3.8; Matrix-remodeling-associated protein 1; Plasma membrane calcium ATPase isoform 4; Plasma membrane calcium pump isoform 4;)
genome : 203,596,243 - 203,712,587 (116,345)
query : 1 - 7,969 (7,969/7,969)
22 exons
identity = 0.999
5'(1.000;0.995;1.000;1.000;0.992;1.000;1.000;
1.000;0.995;1.000;1.000;1.000;0.994;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.999)3'
coverage = 1.000
EC number :
EC 3.6.3.8
InterPro :
IPR001757 : P-type ATPase
IPR004014 : Cation-transporting P-type ATPase, N-terminal
IPR006068 : Cation-transporting P-type ATPase, C-terminal
IPR006408 : P-type ATPase, subfamily IIB
IPR008250 : P-type ATPase, A domain
IPR018303 : P-type ATPase, phosphorylation site
IPR022141 : Plasma membrane calcium transporting P-type ATPase, C-terminal
IPR023214 : HAD-like domain
IPR023298 : P-type ATPase, transmembrane domain
IPR023299 : P-type ATPase, cytoplasmic domain N
GO :
0000166 : Molecular Function : nucleotide binding
0005388 : Molecular Function : calcium-transporting ATPase activity
0005524 : Molecular Function : ATP binding
0006812 : Biological Process : cation transport
0016020 : Cellular Component : membrane
0016021 : Cellular Component : integral component of membrane
0019829 : Molecular Function : cation-transporting ATPase activity
0046872 : Molecular Function : metal ion binding
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023651)
Ortholog candidate ( ->
Evola
)
Canis
sp. (Dog) : AF216706
Mus
sp. (Mouse) : AY560895
Macaca
sp. (Macaque) : AY928176
Gallus
sp. (Chicken) : BX935505
Equus
sp. (Horse) : ENSECAT00000006583
Monodelphis
sp. (Opossum) : ENSMODT00000001383
Oryzias
sp. (Medaka) : ENSORLT00000005884
Pongo
sp. (Orangutan) : ENSPPYT00000000381
Danio
sp. (Zebrafish) : EU559285
Tetraodon
sp. (Tetraodon) : GSTENT00029836001
Bos
sp. (Cow) : M83364
Takifugu
sp. (Fugu) : SINFRUT00000180479
Rattus
sp. (Rat) : U15408
Pan
sp. (Chimpanzee) : XM_001156333
HIX0161380
HIT000549752 (
ENST00000451818
)
(Ribosomal protein S8e/ribosomal biogenesis NSA2 family protein.)
genome : 203,626,097 - 203,626,888 (792)
query : 1 - 792 (792/792)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 25, cyto_nucl 16.5, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0161380)
HIX0023651
HIT000196534
(
M83363
)
(Plasma membrane calcium-transporting ATPase 4; PMCA4; EC=3.6.3.8; Matrix-remodeling-associated protein 1; Plasma membrane calcium ATPase isoform 4; Plasma membrane calcium pump isoform 4;)
genome : 203,651,937 - 203,709,447 (57,511)
query : 1 - 4,658 (4,658/4,667)
21 exons
identity = 0.998
5'(0.993;0.995;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.997)3'
coverage = 1.000
EC number :
EC 3.6.3.8
InterPro :
IPR001757 : P-type ATPase
IPR004014 : Cation-transporting P-type ATPase, N-terminal
IPR006068 : Cation-transporting P-type ATPase, C-terminal
IPR006408 : P-type ATPase, subfamily IIB
IPR008250 : P-type ATPase, A domain
IPR018303 : P-type ATPase, phosphorylation site
IPR022141 : Plasma membrane calcium transporting P-type ATPase, C-terminal
IPR023214 : HAD-like domain
IPR023298 : P-type ATPase, transmembrane domain
IPR023299 : P-type ATPase, cytoplasmic domain N
GO :
0000166 : Molecular Function : nucleotide binding
0005388 : Molecular Function : calcium-transporting ATPase activity
0005524 : Molecular Function : ATP binding
0006812 : Biological Process : cation transport
0016020 : Cellular Component : membrane
0016021 : Cellular Component : integral component of membrane
0019829 : Molecular Function : cation-transporting ATPase activity
0046872 : Molecular Function : metal ion binding
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023651)
HIX0023651
HIT000133990 (
ENST00000341360
)
(Plasma membrane calcium-transporting ATPase 4; PMCA4; EC=3.6.3.8; Matrix-remodeling-associated protein 1; Plasma membrane calcium ATPase isoform 4; Plasma membrane calcium pump isoform 4;)
genome : 203,651,937 - 203,709,447 (57,511)
query : 1 - 4,658 (4,658/4,658)
21 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.6.3.8
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023651)
HIX0023651
HIT000195018
(
M25874
)
(Plasma membrane calcium-transporting ATPase 4; PMCA4; EC=3.6.3.8; Matrix-remodeling-associated protein 1; Plasma membrane calcium ATPase isoform 4; Plasma membrane calcium pump isoform 4;)
genome : 203,651,937 - 203,709,446 (57,510)
query : 1 - 4,479 (4,479/4,479)
20 exons
identity = 0.998
5'(0.993;0.995;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.997)3'
coverage = 1.000
EC number :
EC 3.6.3.8
InterPro :
IPR001757 : P-type ATPase
IPR004014 : Cation-transporting P-type ATPase, N-terminal
IPR006068 : Cation-transporting P-type ATPase, C-terminal
IPR006408 : P-type ATPase, subfamily IIB
IPR008250 : P-type ATPase, A domain
IPR018303 : P-type ATPase, phosphorylation site
IPR022141 : Plasma membrane calcium transporting P-type ATPase, C-terminal
IPR023214 : HAD-like domain
IPR023298 : P-type ATPase, transmembrane domain
IPR023299 : P-type ATPase, cytoplasmic domain N
GO :
0000166 : Molecular Function : nucleotide binding
0005388 : Molecular Function : calcium-transporting ATPase activity
0005524 : Molecular Function : ATP binding
0006812 : Biological Process : cation transport
0016020 : Cellular Component : membrane
0016021 : Cellular Component : integral component of membrane
0019829 : Molecular Function : cation-transporting ATPase activity
0046872 : Molecular Function : metal ion binding
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023651)
HIX0023651
HIT000435789
(
BC150293
)
(Plasma membrane calcium-transporting ATPase 4 isoform 4a.)
genome : 203,652,080 - 203,702,756 (50,677)
query : 1 - 3,969 (3,969/3,983)
20 exons
identity = 0.998
5'(0.991;0.995;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.996;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.6.3.8
InterPro :
IPR001757 : P-type ATPase
IPR004014 : Cation-transporting P-type ATPase, N-terminal
IPR006068 : Cation-transporting P-type ATPase, C-terminal
IPR006408 : P-type ATPase, subfamily IIB
IPR008250 : P-type ATPase, A domain
IPR018303 : P-type ATPase, phosphorylation site
IPR022141 : Plasma membrane calcium transporting P-type ATPase, C-terminal
IPR023214 : HAD-like domain
IPR023298 : P-type ATPase, transmembrane domain
IPR023299 : P-type ATPase, cytoplasmic domain N
GO :
0000166 : Molecular Function : nucleotide binding
0005388 : Molecular Function : calcium-transporting ATPase activity
0005524 : Molecular Function : ATP binding
0006812 : Biological Process : cation transport
0016020 : Cellular Component : membrane
0016021 : Cellular Component : integral component of membrane
0019829 : Molecular Function : cation-transporting ATPase activity
0046872 : Molecular Function : metal ion binding
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023651)
HIX0023651
HIT000425255
(
AK292458
)
(Plasma membrane calcium-transporting ATPase 4 isoform 4a.)
genome : 203,652,098 - 203,702,604 (50,507)
query : 1 - 3,799 (3,799/3,799)
20 exons
identity = 0.997
5'(0.991;0.995;1.000;1.000;1.000;1.000;1.000;
1.000;0.992;1.000;1.000;1.000;0.989;1.000;
0.995;0.995;1.000;0.991;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.6.3.8
InterPro :
IPR001757 : P-type ATPase
IPR004014 : Cation-transporting P-type ATPase, N-terminal
IPR006068 : Cation-transporting P-type ATPase, C-terminal
IPR006408 : P-type ATPase, subfamily IIB
IPR008250 : P-type ATPase, A domain
IPR018303 : P-type ATPase, phosphorylation site
IPR022141 : Plasma membrane calcium transporting P-type ATPase, C-terminal
IPR023214 : HAD-like domain
IPR023298 : P-type ATPase, transmembrane domain
IPR023299 : P-type ATPase, cytoplasmic domain N
GO :
0000166 : Molecular Function : nucleotide binding
0005388 : Molecular Function : calcium-transporting ATPase activity
0005524 : Molecular Function : ATP binding
0006812 : Biological Process : cation transport
0016020 : Cellular Component : membrane
0016021 : Cellular Component : integral component of membrane
0019829 : Molecular Function : cation-transporting ATPase activity
0046872 : Molecular Function : metal ion binding
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023651)
HIX0023651
HIT000391783
(
DQ201781
)
(Plasma membrane calcium-transporting ATPase 4; PMCA4; EC=3.6.3.8; Matrix-remodeling-associated protein 1; Plasma membrane calcium ATPase isoform 4; Plasma membrane calcium pump isoform 4;)
genome : 203,670,001 - 203,676,219 (6,219)
query : 1 - 332 (332/333)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 0.997
EC number :
EC 3.6.3.8
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 11.5, pero 9, cyto_mito 8.66667,
mito_pero 7.83333, nucl 5, mito 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023651)
HIX0023651
HIT000391782
(
DQ201780
)
(Plasma membrane calcium-transporting ATPase 4; PMCA4; EC=3.6.3.8; Matrix-remodeling-associated protein 1; Plasma membrane calcium ATPase isoform 4; Plasma membrane calcium pump isoform 4;)
genome : 203,691,721 - 203,709,047 (17,327)
query : 1 - 758 (758/758)
4 exons
identity = 0.997
5'(0.980;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.6.3.8
InterPro :
IPR006068 : Cation-transporting P-type ATPase, C-terminal
IPR022141 : Plasma membrane calcium transporting P-type ATPase, C-terminal
IPR023298 : P-type ATPase, transmembrane domain
GO :
0005388 : Molecular Function : calcium-transporting ATPase activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 18, plas 9, pero 2, E.R. 1.5, E.R._mito 1.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023651)
HIX0023651
HIT000425970
(
AK307104
)
(Plasma membrane calcium-transporting ATPase 4 isoform 4b.)
genome : 203,691,752 - 203,709,817 (18,066)
query : 1 - 1,672 (1,672/1,672)
5 exons
identity = 0.999
5'(1.000;1.000;1.000;0.994;0.999)3'
coverage = 1.000
EC number :
EC 3.6.3.8
InterPro :
IPR022141 : Plasma membrane calcium transporting P-type ATPase, C-terminal
IPR023298 : P-type ATPase, transmembrane domain
GO :
0005388 : Molecular Function : calcium-transporting ATPase activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 26.5, extr_plas 14, E.R. 2, golg 2, E.R._golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023651)
HIX0023651
HIT000219797
(
U42026
)
(Plasma membrane calcium-transporting ATPase 4 isoform 4a.)
genome : 203,691,770 - 203,708,746 (16,977)
query : 1 - 584 (584/584)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.6.3.8
InterPro :
IPR022141 : Plasma membrane calcium transporting P-type ATPase, C-terminal
IPR023298 : P-type ATPase, transmembrane domain
GO :
0005388 : Molecular Function : calcium-transporting ATPase activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 28, E.R. 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023651)
HIX0023651
HIT000219801
(
U42061
)
(Plasma membrane calcium-transporting ATPase 4 isoform 4b.)
genome : 203,691,770 - 203,708,746 (16,977)
query : 1 - 406 (406/406)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.6.3.8
InterPro :
IPR022141 : Plasma membrane calcium transporting P-type ATPase, C-terminal
IPR023298 : P-type ATPase, transmembrane domain
GO :
0005388 : Molecular Function : calcium-transporting ATPase activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023651)
HIX0023651
HIT000219802
(
U42062
)
(Plasma membrane calcium-transporting ATPase 4; PMCA4; EC=3.6.3.8; Matrix-remodeling-associated protein 1; Plasma membrane calcium ATPase isoform 4; Plasma membrane calcium pump isoform 4;)
genome : 203,691,770 - 203,708,746 (16,977)
query : 1 - 476 (476/476)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.6.3.8
InterPro :
IPR022141 : Plasma membrane calcium transporting P-type ATPase, C-terminal
GO :
0005388 : Molecular Function : calcium-transporting ATPase activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 28, lyso 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023651)
HIX0023651
HIT000219808
(
U42378
)
(Plasma membrane calcium-transporting ATPase 4; PMCA4; EC=3.6.3.8; Matrix-remodeling-associated protein 1; Plasma membrane calcium ATPase isoform 4; Plasma membrane calcium pump isoform 4;)
genome : 203,691,770 - 203,708,746 (16,977)
query : 1 - 514 (514/514)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.6.3.8
InterPro :
IPR022141 : Plasma membrane calcium transporting P-type ATPase, C-terminal
IPR023298 : P-type ATPase, transmembrane domain
GO :
0005388 : Molecular Function : calcium-transporting ATPase activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 27, E.R. 2, lyso 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023651)
HIX0023651
HIT000556026 (
ENST00000458092
)
(Plasma membrane calcium-transporting ATPase 4; PMCA4; EC=3.6.3.8; Matrix-remodeling-associated protein 1; Plasma membrane calcium ATPase isoform 4; Plasma membrane calcium pump isoform 4;)
genome : 203,693,025 - 203,697,438 (4,414)
query : 1 - 429 (429/429)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.6.3.8
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 23, cyto 6, cyto_nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023651)
HIX0023651
HIT000571060 (
ENST00000466407
)
(Plasma membrane calcium-transporting ATPase 4; PMCA4; EC=3.6.3.8; Matrix-remodeling-associated protein 1; Plasma membrane calcium ATPase isoform 4; Plasma membrane calcium pump isoform 4;)
genome : 203,693,089 - 203,696,882 (3,794)
query : 1 - 388 (388/388)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.6.3.8
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 26, cyto_nucl 17, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023651)
HIX0023651
HIT000310677 (
ENST00000356729
)
(Plasma membrane calcium-transporting ATPase 4 isoform 4a.)
genome : 203,693,091 - 203,702,760 (9,670)
query : 1 - 613 (613/613)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.6.3.8
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 12.5, nucl 7.5, extr 6,
E.R._mito 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023651)
HIX0023651
HIT000056348
(
BX647701
)
(Plasma membrane calcium-transporting ATPase 4; PMCA4; EC=3.6.3.8; Matrix-remodeling-associated protein 1; Plasma membrane calcium ATPase isoform 4; Plasma membrane calcium pump isoform 4;)
genome : 203,696,596 - 203,713,208 (16,613)
query : 1 - 4,694 (4,694/4,714)
4 exons
identity = 0.999
5'(1.000;1.000;1.000;0.999)3'
coverage = 1.000
EC number :
EC 3.6.3.8
InterPro :
IPR022141 : Plasma membrane calcium transporting P-type ATPase, C-terminal
GO :
0005388 : Molecular Function : calcium-transporting ATPase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14.5, cyto 14, nucl 13, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023651)
HIX0023651
HIT000588582 (
ENST00000484746
)
(Plasma membrane calcium-transporting ATPase 4; PMCA4; EC=3.6.3.8; Matrix-remodeling-associated protein 1; Plasma membrane calcium ATPase isoform 4; Plasma membrane calcium pump isoform 4;)
genome : 203,696,596 - 203,713,208 (16,613)
query : 1 - 4,697 (4,697/4,697)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.6.3.8
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14.5, cyto 14, nucl 13, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023651)
HIX0057040
HIT000367293 (
NR_003019
)
(Conserved hypothetical protein.)
genome : 203,698,709 - 203,698,833 (125)
query : 1 - 125 (125/125)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, mito 5, cyto 3, E.R._mito 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057040)
HIX0057040
HIT000506787 (
ENST00000408716
)
(Conserved hypothetical protein.)
genome : 203,698,709 - 203,698,833 (125)
query : 1 - 125 (125/125)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, mito 5, cyto 3, E.R._mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0057040)
HIX0018765
HIT000030047
(
BC000988
)
Representative transcript
(Conserved hypothetical protein.)
genome : 203,699,705 - 203,700,978 (1,274)
query : 1 - 1,274 (1,274/1,296)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13, cyto_nucl 10.5, mito 7, cyto 6, extr 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018765)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : ENSMMUT00000045089
HIX0214356
HIT000726538 (
NR_046213
)
(Conserved hypothetical protein.)
genome : 203,699,705 - 203,700,981 (1,277)
query : 1 - 1,277 (1,277/1,277)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto_nucl 10, nucl 9.5, cyto 5.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214356)
HIX0023651
HIT000260408
(
BC062445
)
(Plasma membrane calcium-transporting ATPase 4 isoform 4a.)
genome : 203,702,115 - 203,703,266 (1,152)
query : 3 - 1,154 (1,152/1,183)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 0.998
EC number :
EC 3.6.3.8
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13.5, nucl 13, cyto 12, extr 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023651)
HIX0023651
HIT000054530
(
BX537745
)
(Plasma membrane calcium-transporting ATPase 4; PMCA4; EC=3.6.3.8; Matrix-remodeling-associated protein 1; Plasma membrane calcium ATPase isoform 4; Plasma membrane calcium pump isoform 4;)
genome : 203,707,823 - 203,713,161 (5,339)
query : 1 - 5,336 (5,336/5,352)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
EC number :
EC 3.6.3.8
InterPro :
IPR022141 : Plasma membrane calcium transporting P-type ATPase, C-terminal
GO :
0005388 : Molecular Function : calcium-transporting ATPase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13, cyto 10, extr 6, cyto_mito 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023651)
HIX0199807
HIT000206642 (
NM_017773
)
(Lymphocyte transmembrane adapter 1; Linker for activation of X cells; Membrane-associated adapter protein LAX;)
genome : 203,734,284 - 203,745,479 (11,196)
query : 1 - 3,277 (3,277/3,298)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 12, nucl 8, plas 6.5, extr_plas 4, mito_nucl 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199807)
HIX0199807
HIT000560327 (
NM_001136190
)
(Lymphocyte transmembrane adapter 1 isoform b.)
genome : 203,734,284 - 203,745,479 (11,196)
query : 1 - 3,006 (3,006/3,027)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 15, plas 5.5, extr_plas 4.5, cyto 3, pero 3,
cyto_pero 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199807)
HIX0199807
HIT000540495 (
ENST00000442561
)
(Lymphocyte transmembrane adapter 1; Linker for activation of X cells; Membrane-associated adapter protein LAX;)
genome : 203,734,304 - 203,745,245 (10,942)
query : 1 - 3,023 (3,023/3,023)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 12, nucl 8, plas 6.5, extr_plas 4, mito_nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199807)
HIX0199807
HIT000495700
(
AK301076
)
(Lymphocyte transmembrane adapter 1; Linker for activation of X cells; Membrane-associated adapter protein LAX;)
genome : 203,734,304 - 203,744,205 (9,902)
query : 1 - 1,983 (1,983/1,983)
5 exons
identity = 0.997
5'(1.000;1.000;1.000;1.000;0.996)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 12, nucl 8, plas 6.5, extr_plas 4, mito_nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199807)
HIX0199807
HIT000348497 (
ENST00000367217
)
(Lymphocyte transmembrane adapter 1 isoform b.)
genome : 203,734,305 - 203,743,850 (9,546)
query : 1 - 1,356 (1,356/1,356)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 15, plas 5.5, extr_plas 4.5, cyto 3, pero 3,
cyto_pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199807)
HIX0199807
HIT000496045
(
AK301421
)
(Lymphocyte transmembrane adapter 1 isoform b.)
genome : 203,734,311 - 203,743,850 (9,540)
query : 1 - 1,350 (1,350/1,350)
5 exons
identity = 0.996
5'(1.000;1.000;1.000;1.000;0.994)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 15, plas 5.5, extr_plas 4.5, cyto 3, pero 3,
cyto_pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199807)
HIX0199807
HIT000266251
(
BC089408
)
Representative transcript
(Lymphocyte transmembrane adapter 1; Linker for activation of X cells; Membrane-associated adapter protein LAX;)
genome : 203,734,337 - 203,745,479 (11,143)
query : 1 - 3,225 (3,225/3,246)
5 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;0.999)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 12, nucl 8, plas 6.5, extr_plas 4, mito_nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199807)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : BC042765
Rattus
sp. (Rat) : BC089837
Bos
sp. (Cow) : BT021859
Canis
sp. (Dog) : ENSCAFT00000015207
Pongo
sp. (Orangutan) : ENSPPYT00000000380
Macaca
sp. (Macaque) : XM_001101278
Pan
sp. (Chimpanzee) : XM_001156566
Monodelphis
sp. (Opossum) : XM_001370200
Equus
sp. (Horse) : XM_001488845
HIX0199807
HIT000084342
(
AY090784
)
(Lymphocyte transmembrane adapter 1; Linker for activation of X cells; Membrane-associated adapter protein LAX;)
genome : 203,734,381 - 203,744,007 (9,627)
query : 8 - 1,715 (1,708/1,715)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.996
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 12, nucl 8, plas 6.5, extr_plas 4, mito_nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199807)
HIX0199807
HIT000002822
(
AK000347
)
(Lymphocyte transmembrane adapter 1 isoform b.)
genome : 203,738,766 - 203,745,361 (6,596)
query : 3 - 2,725 (2,723/2,761)
5 exons
identity = 0.996
5'(1.000;1.000;1.000;1.000;0.996)3'
coverage = 0.997
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 10.5, extr_plas 10.5, plas 7.5, mito 7, lyso 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199807)
HIX0199807
HIT000384461
(
AK225331
)
(Lymphocyte transmembrane adapter 1 isoform b.)
genome : 203,738,766 - 203,743,908 (5,143)
query : 3 - 1,268 (1,266/1,268)
5 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;0.998)3'
coverage = 0.998
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 10.5, extr_plas 10.5, plas 7.5, mito 7, lyso 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199807)
HIX0199807
HIT000348495 (
ENST00000367215
)
(Lymphocyte transmembrane adapter 1 isoform b.)
genome : 203,738,766 - 203,745,361 (6,596)
query : 1 - 2,719 (2,719/2,719)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr_plas 11, extr 10.5, plas 8.5, mito 6, pero 3,
lyso 3, E.R._mito 3, mito_nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199807)
HIX0199807
HIT000263801
(
BC069650
)
(Lymphocyte transmembrane adapter 1 isoform b.)
genome : 203,740,011 - 203,743,899 (3,889)
query : 1 - 1,143 (1,143/1,143)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, lyso 4, mito 3, nucl 1.5, cyto_nucl 1.5,
E.R._mito 1.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0199807)
HIX0203530
HIT000441744_09
(
DQ575213
)
Representative transcript
(Non-protein coding transcript.)
genome : 203,760,222 - 203,760,251 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0203530)
HIX0213689
HIT000571121 (
ENST00000466470
)
(Hypothetical short protein.)
genome : 203,764,782 - 203,771,301 (6,520)
query : 1 - 944 (944/944)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213689)
HIX0213689
HIT000566839 (
ENST00000461980
)
(Hypothetical short protein.)
genome : 203,764,788 - 203,771,389 (6,602)
query : 1 - 822 (822/822)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213689)
HIX0213689
HIT000596287 (
ENST00000492823
)
(Hypothetical short protein.)
genome : 203,764,814 - 203,765,916 (1,103)
query : 1 - 447 (447/447)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 24, nucl 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213689)
HIX0213689
HIT000348492_01 (
ENST00000367212
)
(Zinc finger, CCCH-type domain containing protein.)
genome : 203,764,827 - 203,821,549 (56,723)
query : 1 - 2,995 (2,995/3,004)
20 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.994;0.976;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25.5, cyto_nucl 16.5, cyto 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213689)
HIX0213689
HIT000663867 (
ENST00000550078
)
(Zinc finger, BED-type domain containing protein.)
genome : 203,765,437 - 203,769,686 (4,250)
query : 1 - 4,250 (4,250/4,250)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14, mito 9, cyto_nucl 9, extr 5, cyto 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213689)
HIX0213689
HIT000655129 (
NM_001174108
)
(Zinc finger, BED-type domain containing protein.)
genome : 203,766,651 - 203,769,590 (2,940)
query : 1 - 2,940 (2,940/2,940)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14, mito 9, cyto_nucl 9, extr 5, cyto 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213689)
HIX0159983
HIT000067103
(
AF086224
)
Representative transcript
(Conserved hypothetical protein.)
genome : 203,769,301 - 203,769,971 (671)
query : 2 - 672 (671/672)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17, cyto 11.5, cyto_nucl 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0159983)
HIX0160828
HIT000530694 (
ENST00000432760
)
(Snf7 family protein.)
genome : 203,774,749 - 203,775,391 (643)
query : 1 - 643 (643/643)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 24, nucl 3, mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0160828)
HIX0213689
HIT000098940
(
BC048271
)
(Zinc finger, CCCH-type domain containing protein.)
genome : 203,776,485 - 203,818,936 (42,452)
query : 1 - 1,966 (1,966/2,077)
14 exons
identity = 0.997
5'(1.000;1.000;0.992;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.960)3'
coverage = 1.000
InterPro :
IPR000571 : Zinc finger, CCCH-type
GO :
0046872 : Molecular Function : metal ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27.5, cyto_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213689)
HIX0023828
HIT000049795
(
AK130524
)
Representative transcript
(Hypothetical protein.)
genome : 203,782,046 - 203,783,651 (1,606)
query : 1 - 1,604 (1,604/1,604)
1 exon
identity = 0.996
5'(0.996)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023828)
HIX0213689
HIT000000388
(
AB014563
)
Representative transcript
(Zinc finger CCCH domain-containing protein 11A;)
genome : 203,784,033 - 203,823,246 (39,214)
query : 1 - 4,365 (4,365/4,365)
17 exons
identity = 0.998
5'(0.985;1.000;0.992;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.994;
0.976;1.000;0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25.5, cyto_nucl 16.5, cyto 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213689)
HIX0213689
HIT000348490 (
ENST00000367210
)
(Zinc finger, CCCH-type domain containing protein.)
genome : 203,784,033 - 203,823,246 (39,214)
query : 1 - 4,365 (4,365/4,365)
17 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.994;
0.976;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25.5, cyto_nucl 16.5, cyto 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213689)
HIX0023730
HIT000046101
(
AK126228
)
Representative transcript
(Conserved hypothetical protein.)
genome : 203,790,125 - 203,793,402 (3,278)
query : 1 - 3,275 (3,275/3,275)
1 exon
identity = 0.994
5'(0.994)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023730)
HIX0213689
HIT000584376 (
ENST00000480354
)
(Conserved hypothetical protein.)
genome : 203,798,399 - 203,799,024 (626)
query : 1 - 501 (501/501)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18.5, cyto_nucl 14.5, cyto 9.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213689)
HIX0160673
HIT000525216 (
ENST00000427282
)
(Ribosomal protein L35A family protein.)
genome : 203,804,713 - 203,805,040 (328)
query : 1 - 328 (328/328)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14, cyto 10.5, cyto_nucl 10, nucl 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0160673)
HIX0213689
HIT000429336
(
AK310470
)
(Zinc finger CCCH domain-containing protein 11A.)
genome : 203,808,446 - 203,821,864 (13,419)
query : 1 - 1,865 (1,865/1,865)
8 exons
identity = 0.997
5'(1.000;1.000;1.000;1.000;0.994;0.976;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213689)
HIX0213689
HIT000592062 (
ENST00000488411
)
(Conserved hypothetical protein.)
genome : 203,819,302 - 203,820,250 (949)
query : 1 - 574 (574/574)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17.5, mito_nucl 12.5, extr 8, nucl 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213689)
HIX0213689
HIT000023798
(
AL049419
)
(Conserved hypothetical protein.)
genome : 203,821,699 - 203,823,252 (1,554)
query : 4 - 1,557 (1,554/1,574)
1 exon
identity = 0.998
5'(0.998)3'
coverage = 0.997
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 15, extr 15, extr_plas 15
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213689)
HIX0001493
pHIT000003220 ( pHIT000003220 )
(Keratin, type II cytoskeletal; XENCK55(5/6);)
genome : 203,830,690 - 203,843,211 (12,522)
query : 1 - 912 (912/912)
3 exons
SOSUI :
SOLUBLE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001493)
CAGE tag :
H22BA86E0409
HIX0001493
pHIT000003221 ( pHIT000003221 )
(Keratin, type II cytoskeletal; XENCK55(5/6);)
genome : 203,830,690 - 203,843,211 (12,522)
query : 1 - 981 (981/981)
4 exons
InterPro :
IPR001163 : Ribonucleoprotein LSM domain
IPR006649 : Ribonucleoprotein LSM domain, eukaryotic/archaea-type
IPR010920 : Like-Sm (LSM) domain
IPR027078 : Small nuclear ribonucleoprotein E
GO :
0000398 : Biological Process : mRNA splicing, via spliceosome
0005681 : Cellular Component : spliceosomal complex
SOSUI :
SOLUBLE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001493)
CAGE tag :
H08BA15J1706
HIX0001493
pHIT000098855 ( pHIT000098855 )
(Keratin, type II cytoskeletal; XENCK55(5/6);)
genome : 203,830,690 - 203,843,211 (12,522)
query : 1 - 849 (849/849)
2 exons
SOSUI :
SOLUBLE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001493)
CAGE tag :
T01F0C0AC103
HIX0001493
HIT000426121
(
AK307255
)
(Small nuclear ribonucleoprotein E; snRNP-E; Sm protein E; Sm-E; SmE;)
genome : 203,830,727 - 203,839,206 (8,480)
query : 1 - 530 (530/530)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001163 : Ribonucleoprotein LSM domain
IPR006649 : Ribonucleoprotein LSM domain, eukaryotic/archaea-type
IPR010920 : Like-Sm (LSM) domain
IPR027078 : Small nuclear ribonucleoprotein E
GO :
0000398 : Biological Process : mRNA splicing, via spliceosome
0005681 : Cellular Component : spliceosomal complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 10.5, mito 9, nucl 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001493)
HIX0001493
HIT000101264
(
D28435
)
(Non-protein coding transcript.)
genome : 203,830,727 - 203,830,793 (67)
query : 1 - 67 (67/67)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001493)
HIX0001493
HIT000579300 (
ENST00000475035
)
(Small nuclear ribonucleoprotein E; snRNP-E; Sm protein E; Sm-E; SmE;)
genome : 203,830,731 - 203,839,212 (8,482)
query : 1 - 532 (532/532)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 10.5, mito 9, nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001493)
HIX0001493
HIT000587005 (
ENST00000483099
)
(Small nuclear ribonucleoprotein E; snRNP-E; Sm protein E; Sm-E; SmE;)
genome : 203,830,731 - 203,839,209 (8,479)
query : 1 - 967 (967/967)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 11, plas 9.5, extr_plas 9, extr 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001493)
HIX0001493
HIT000428006
(
AK309140
)
(Conserved hypothetical protein.)
genome : 203,830,732 - 203,832,188 (1,457)
query : 2 - 976 (975/976)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 0.999
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 23, mito 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001493)
HIX0001493
HIT000430996
(
AK312130
)
(Small nuclear ribonucleoprotein E; snRNP-E; Sm protein E; Sm-E; SmE;)
genome : 203,830,736 - 203,839,060 (8,325)
query : 1 - 331 (331/331)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001163 : Ribonucleoprotein LSM domain
IPR006649 : Ribonucleoprotein LSM domain, eukaryotic/archaea-type
IPR010920 : Like-Sm (LSM) domain
IPR027078 : Small nuclear ribonucleoprotein E
GO :
0000398 : Biological Process : mRNA splicing, via spliceosome
0005681 : Cellular Component : spliceosomal complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 19, cyto 8, nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001493)
HIX0001493
HIT000574963 (
ENST00000470492
)
(Small nuclear ribonucleoprotein E; snRNP-E; Sm protein E; Sm-E; SmE;)
genome : 203,830,737 - 203,839,205 (8,469)
query : 1 - 478 (478/478)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 11, extr 6, cysk 4, nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001493)
HIX0001493
HIT000199958 (
NM_003094
)
(Small nuclear ribonucleoprotein E; snRNP-E; Sm protein E; Sm-E; SmE;)
genome : 203,830,740 - 203,840,279 (9,540)
query : 1 - 1,546 (1,546/1,593)
5 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 19, cyto 8, nucl 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001493)
HIX0001493
HIT000334313
(
BC090951
)
Representative transcript
(Small nuclear ribonucleoprotein E; snRNP-E; Sm protein E; Sm-E; SmE;)
genome : 203,830,740 - 203,840,279 (9,540)
query : 1 - 1,546 (1,546/1,593)
5 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR001163 : Ribonucleoprotein LSM domain
IPR006649 : Ribonucleoprotein LSM domain, eukaryotic/archaea-type
IPR010920 : Like-Sm (LSM) domain
IPR027078 : Small nuclear ribonucleoprotein E
GO :
0000398 : Biological Process : mRNA splicing, via spliceosome
0005681 : Cellular Component : spliceosomal complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 19, cyto 8, nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001493)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : BC008262
Danio
sp. (Zebrafish) : BC049062
Bos
sp. (Cow) : BC114915
Gallus
sp. (Chicken) : CR387277
Tetraodon
sp. (Tetraodon) : CR632604
Oryzias
sp. (Medaka) : ENSORLT00000015100
Pongo
sp. (Orangutan) : ENSPPYT00000000377
Takifugu
sp. (Fugu) : SINFRUT00000181529
Macaca
sp. (Macaque) : XM_001099697
Pan
sp. (Chimpanzee) : XM_001158544
Monodelphis
sp. (Opossum) : XM_001364939
Canis
sp. (Dog) : XM_536093
HIX0001493
HIT000512421 (
ENST00000414487
)
(Small nuclear ribonucleoprotein E; snRNP-E; Sm protein E; Sm-E; SmE;)
genome : 203,830,743 - 203,839,678 (8,936)
query : 1 - 942 (942/942)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 19, cyto 8, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001493)
HIX0001493
HIT000321306
(
X12466
)
(Small nuclear ribonucleoprotein E; snRNP-E; Sm protein E; Sm-E; SmE;)
genome : 203,830,743 - 203,839,228 (8,486)
query : 1 - 492 (492/500)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.984
InterPro :
IPR001163 : Ribonucleoprotein LSM domain
IPR006649 : Ribonucleoprotein LSM domain, eukaryotic/archaea-type
IPR010920 : Like-Sm (LSM) domain
IPR027078 : Small nuclear ribonucleoprotein E
GO :
0000398 : Biological Process : mRNA splicing, via spliceosome
0005681 : Cellular Component : spliceosomal complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 19, cyto 8, nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001493)
HIX0001493
HIT000195722
(
M37716
)
(Small nuclear ribonucleoprotein E; snRNP-E; Sm protein E; Sm-E; SmE;)
genome : 203,830,743 - 203,839,227 (8,485)
query : 1 - 491 (491/491)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001163 : Ribonucleoprotein LSM domain
IPR006649 : Ribonucleoprotein LSM domain, eukaryotic/archaea-type
IPR010920 : Like-Sm (LSM) domain
IPR027078 : Small nuclear ribonucleoprotein E
GO :
0000398 : Biological Process : mRNA splicing, via spliceosome
0005681 : Cellular Component : spliceosomal complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 19, cyto 8, nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001493)
HIX0001493
HIT000031057
(
BC002639
)
(Small nuclear ribonucleoprotein E; snRNP-E; Sm protein E; Sm-E; SmE;)
genome : 203,830,744 - 203,839,207 (8,464)
query : 1 - 470 (470/488)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001163 : Ribonucleoprotein LSM domain
IPR006649 : Ribonucleoprotein LSM domain, eukaryotic/archaea-type
IPR010920 : Like-Sm (LSM) domain
IPR027078 : Small nuclear ribonucleoprotein E
GO :
0000398 : Biological Process : mRNA splicing, via spliceosome
0005681 : Cellular Component : spliceosomal complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 19, cyto 8, nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001493)
HIX0001493
HIT000264878
(
BC072433
)
(Small nuclear ribonucleoprotein E; snRNP-E; Sm protein E; Sm-E; SmE;)
genome : 203,830,765 - 203,840,279 (9,515)
query : 1 - 1,521 (1,521/1,625)
5 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR001163 : Ribonucleoprotein LSM domain
IPR006649 : Ribonucleoprotein LSM domain, eukaryotic/archaea-type
IPR010920 : Like-Sm (LSM) domain
IPR027078 : Small nuclear ribonucleoprotein E
GO :
0000398 : Biological Process : mRNA splicing, via spliceosome
0005681 : Cellular Component : spliceosomal complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 19, cyto 8, nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001493)
HIX0001493
HIT000480866_02 (
ENST00000397592
)
(Small nuclear ribonucleoprotein E; snRNP-E; Sm protein E; Sm-E; SmE;)
genome : 203,830,788 - 203,839,060 (8,273)
query : 1 - 279 (279/279)
5 exons
identity = 0.978
5'(0.944;1.000;0.968;0.987;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 25, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001493)
HIX0001493
HIT000194426
(
M15919
)
(Small nuclear ribonucleoprotein E; snRNP-E; Sm protein E; Sm-E; SmE;)
genome : 203,830,820 - 203,839,108 (8,289)
query : 1 - 295 (295/295)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001163 : Ribonucleoprotein LSM domain
IPR006649 : Ribonucleoprotein LSM domain, eukaryotic/archaea-type
IPR010920 : Like-Sm (LSM) domain
IPR027078 : Small nuclear ribonucleoprotein E
GO :
0000398 : Biological Process : mRNA splicing, via spliceosome
0005681 : Cellular Component : spliceosomal complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, mito 12, cyto_nucl 8.5, nucl 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001493)
HIX0001493
HIT000573973 (
ENST00000469451
)
(Small nuclear ribonucleoprotein E; snRNP-E; Sm protein E; Sm-E; SmE;)
genome : 203,830,978 - 203,834,247 (3,270)
query : 1 - 248 (248/248)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 18.1667, cyto 13.5, nucl 9.5,
cyto_plas 9.33333, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001493)
HIX0001493
HIT000348488 (
ENST00000367208
)
(Small nuclear ribonucleoprotein E; snRNP-E; Sm protein E; Sm-E; SmE;)
genome : 203,832,753 - 203,839,179 (6,427)
query : 1 - 355 (355/355)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 11, extr 6, cysk 4, nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0001493)
HIX0160456
HIT000518343 (
ENST00000420409
)
(Intermediate filament protein family protein.)
genome : 203,841,702 - 203,843,315 (1,614)
query : 1 - 1,371 (1,371/1,371)
2 exons
identity = 0.997
3'(0.994;0.998)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 12.8333, cyto_pero 10.6667,
nucl 6, extr 3, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0160456)
HIX0203433
HIT000639541 (
ENST00000540496
)
(Chaperonin Cpn10 family protein.)
genome : 203,872,851 - 203,873,147 (297)
query : 1 - 297 (297/297)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23, mito 4, nucl 2, E.R._mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0203433)
HIX0203433
HIT000583523 (
ENST00000479457
)
(Chaperonin Cpn10 family protein.)
genome : 203,872,851 - 203,873,141 (291)
query : 1 - 291 (291/291)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, mito 13, cyto_mito 13
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0203433)
HIX0160269
HIT000511230 (
ENST00000413296
)
(Conserved hypothetical protein.)
genome : 203,923,768 - 203,924,908 (1,141)
query : 1 - 527 (527/527)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18.5, mito_nucl 12.5, extr 8, nucl 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0160269)
HIX0022257
HIT000022516
(
AK097662
)
(Conserved hypothetical protein.)
genome : 204,001,575 - 204,010,393 (8,819)
query : 1 - 1,891 (1,891/1,891)
5 exons
identity = 0.997
3'(1.000;0.994;0.995;1.000;0.994)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, mito 3, cyto 2.5, mito_nucl 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022257)
HIX0022257
HIT000348487 (
ENST00000367207
)
(Conserved hypothetical protein.)
genome : 204,001,575 - 204,010,393 (8,819)
query : 1 - 1,891 (1,891/1,891)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, nucl 5, cyto 4.5, mito 3, cyto_pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022257)
HIX0022257
HIT000563672 (
NR_027902
)
(Conserved hypothetical protein.)
genome : 204,001,575 - 204,010,392 (8,818)
query : 1 - 1,514 (1,514/1,514)
6 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;0.994)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, nucl 5, cyto 4.5, mito 3, cyto_pero 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022257)
HIX0022257
HIT000525733 (
ENST00000427799
)
(Conserved hypothetical protein.)
genome : 204,002,062 - 204,010,393 (8,332)
query : 1 - 1,028 (1,028/1,028)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto 7, cyto_nucl 6.33333, nucl 4.5,
cyto_pero 4.33333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022257)
HIX0022257
HIT000337562
(
BC104010
)
(Conserved hypothetical protein.)
genome : 204,002,062 - 204,010,392 (8,331)
query : 1 - 1,116 (1,116/1,116)
5 exons
identity = 0.999
3'(1.000;1.000;0.997;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, nucl 4, cyto 3.5, cyto_pero 2.5,
mito_nucl 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022257)
HIX0022257
HIT000337563
(
BC104011
)
Representative transcript
(Conserved hypothetical protein.)
genome : 204,002,062 - 204,010,392 (8,331)
query : 1 - 1,027 (1,027/1,027)
6 exons
identity = 0.999
3'(1.000;1.000;0.991;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, nucl 4, cyto 3.5, cyto_pero 2.5,
mito_nucl 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022257)
Ortholog candidate ( ->
Evola
)
Pan
sp. (Chimpanzee) : ENSPTRT00000058327
HIX0022257
HIT000337564
(
BC104012
)
(Conserved hypothetical protein.)
genome : 204,002,062 - 204,010,392 (8,331)
query : 1 - 1,116 (1,116/1,116)
5 exons
identity = 0.999
3'(1.000;1.000;0.997;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, nucl 4, cyto 3.5, cyto_pero 2.5,
mito_nucl 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022257)
HIX0022257
HIT000516179 (
ENST00000418245
)
(Conserved hypothetical protein.)
genome : 204,002,062 - 204,010,392 (8,331)
query : 1 - 1,116 (1,116/1,116)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto 7, cyto_nucl 6.33333, nucl 4.5,
cyto_pero 4.33333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022257)
HIX0028535
HIT000338399
(
BC106038
)
Representative transcript
(Transcription factor SOX-13; Islet cell antigen 12; SRY (Sex determining region Y)-box 13; Type 1 diabetes autoantigen ICA12;)
genome : 204,042,227 - 204,096,793 (54,567)
query : 1 - 4,014 (4,014/4,028)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR009071 : High mobility group box domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25, cyto_nucl 17.5, cyto 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028535)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : BC007130
Danio
sp. (Zebrafish) : ENSDART00000077271
Monodelphis
sp. (Opossum) : ENSMODT00000001458
Pongo
sp. (Orangutan) : ENSPPYT00000000375
Oryzias
sp. (Medaka) : FJ895596
Tetraodon
sp. (Tetraodon) : GSTENT00013305001
Tetraodon
sp. (Tetraodon) : GSTENT00014164001
Takifugu
sp. (Fugu) : SINFRUT00000170807
Rattus
sp. (Rat) : XM_001060642
Macaca
sp. (Macaque) : XM_001099185
Bos
sp. (Cow) : XM_001255512
Equus
sp. (Horse) : XM_001915367
Pan
sp. (Chimpanzee) : XM_514121
Canis
sp. (Dog) : XM_545679
Gallus
sp. (Chicken) : XR_027210
HIX0028535
HIT000096301
(
BC040649
)
(Transcription factor SOX-13; Islet cell antigen 12; SRY (Sex determining region Y)-box 13; Type 1 diabetes autoantigen ICA12;)
genome : 204,042,243 - 204,088,973 (46,731)
query : 6 - 3,516 (3,511/3,531)
7 exons
identity = 0.992
5'(1.000;0.995;1.000;1.000;1.000;1.000;0.988)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16, cyto 14.5, nucl 10.5, extr 3, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028535)
HIX0028535
HIT000499425
(
AK304801
)
(Transcription factor SOX-13; Islet cell antigen 12; SRY (Sex determining region Y)-box 13; Type 1 diabetes autoantigen ICA12;)
genome : 204,042,243 - 204,095,361 (53,119)
query : 1 - 1,987 (1,987/1,987)
13 exons
identity = 0.992
5'(0.965;0.937;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR009071 : High mobility group box domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21.5, cyto_nucl 17.5, cyto 10.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028535)
HIX0028535
HIT000348483 (
ENST00000367203
)
(Transcription factor SOX-13; Islet cell antigen 12; SRY (Sex determining region Y)-box 13; Type 1 diabetes autoantigen ICA12;)
genome : 204,042,243 - 204,088,973 (46,731)
query : 1 - 3,511 (3,511/3,525)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16, cyto 14.5, nucl 10.5, extr 3, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028535)
HIX0028535
HIT000202358 (
NM_005686
)
(Transcription factor SOX-13; Islet cell antigen 12; SRY (Sex determining region Y)-box 13; Type 1 diabetes autoantigen ICA12;)
genome : 204,042,246 - 204,096,870 (54,625)
query : 1 - 4,072 (4,072/4,088)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25, cyto_nucl 17.5, cyto 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028535)
HIX0028535
HIT000633247 (
ENST00000534185
)
(Conserved hypothetical protein.)
genome : 204,042,281 - 204,083,698 (41,418)
query : 1 - 723 (723/723)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028535)
HIX0028535
HIT000630021 (
ENST00000530882
)
(Non-protein coding transcript.)
genome : 204,042,284 - 204,086,286 (44,003)
query : 1 - 769 (769/769)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028535)
HIX0028535
HIT000069935
(
AF116571
)
(Transcription factor SOX-13; Islet cell antigen 12; SRY (Sex determining region Y)-box 13; Type 1 diabetes autoantigen ICA12;)
genome : 204,042,732 - 204,096,863 (54,132)
query : 1 - 3,576 (3,576/3,577)
14 exons
identity = 0.997
5'(0.972;1.000;1.000;1.000;1.000;1.000;0.991;
1.000;1.000;1.000;1.000;1.000;1.000;0.997)3'
coverage = 1.000
InterPro :
IPR009071 : High mobility group box domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25, cyto_nucl 17.5, cyto 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028535)
HIX0028535
HIT000348484 (
ENST00000367204
)
(Transcription factor SOX-13; Islet cell antigen 12; SRY (Sex determining region Y)-box 13; Type 1 diabetes autoantigen ICA12;)
genome : 204,042,732 - 204,096,863 (54,132)
query : 1 - 3,579 (3,579/3,579)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25, cyto_nucl 17.5, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028535)
HIX0028535
HIT000433063
(
AK314197
)
(Transcription factor SOX-13; Islet cell antigen 12; SRY (Sex determining region Y)-box 13; Type 1 diabetes autoantigen ICA12;)
genome : 204,042,750 - 204,095,262 (52,513)
query : 1 - 1,960 (1,960/1,960)
14 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.996)3'
coverage = 1.000
InterPro :
IPR009071 : High mobility group box domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24.5, cyto_nucl 17, cyto 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028535)
HIX0028535
HIT000066538
(
AF083105
)
(Transcription factor SOX-13; Islet cell antigen 12; SRY (Sex determining region Y)-box 13; Type 1 diabetes autoantigen ICA12;)
genome : 204,042,786 - 204,096,914 (54,129)
query : 3 - 3,583 (3,581/3,583)
14 exons
identity = 0.993
5'(1.000;1.000;1.000;1.000;0.994;1.000;1.000;
1.000;0.982;0.991;1.000;0.993;1.000;0.990)3'
coverage = 0.999
InterPro :
IPR009071 : High mobility group box domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25, cyto_nucl 17.5, cyto 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028535)
HIX0028535
HIT000624678 (
ENST00000525442
)
(Conserved hypothetical protein.)
genome : 204,043,154 - 204,082,216 (39,063)
query : 1 - 538 (538/538)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto_nucl 8, nucl 7.5, cyto 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028535)
HIX0028535
HIT000498816
(
AK304192
)
(Transcription factor SOX-13; Islet cell antigen 12; SRY (Sex determining region Y)-box 13; Type 1 diabetes autoantigen ICA12;)
genome : 204,047,257 - 204,095,698 (48,442)
query : 1 - 2,363 (2,363/2,363)
14 exons
identity = 1.000
5'(0.982;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR009071 : High mobility group box domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25.5, cyto_nucl 15.5, cyto 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028535)
HIX0028535
HIT000627767 (
ENST00000528591
)
(Transcription factor SOX-13; Islet cell antigen 12; SRY (Sex determining region Y)-box 13; Type 1 diabetes autoantigen ICA12;)
genome : 204,047,257 - 204,085,755 (38,499)
query : 1 - 597 (597/597)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16, cyto_nucl 14.5, cyto 9, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028535)
HIX0028535
HIT000068563
(
AF098915
)
(Transcription factor SOX-13; Islet cell antigen 12; SRY (Sex determining region Y)-box 13; Type 1 diabetes autoantigen ICA12;)
genome : 204,082,044 - 204,096,870 (14,827)
query : 1 - 3,477 (3,477/3,493)
13 exons
identity = 0.999
5'(1.000;0.991;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR009071 : High mobility group box domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25, cyto_nucl 17.5, cyto 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028535)
HIX0028535
HIT000110849 (
ENST00000272193
)
(Transcription factor SOX-13; Islet cell antigen 12; SRY (Sex determining region Y)-box 13; Type 1 diabetes autoantigen ICA12;)
genome : 204,085,193 - 204,095,280 (10,088)
query : 1 - 1,754 (1,754/1,754)
11 exons
identity = 0.996
5'(0.976;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26.5, cyto_nucl 17.5, cyto 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028535)
HIX0028535
HIT000496406
(
AK301782
)
(Transcription factor SOX-13; Islet cell antigen 12; SRY (Sex determining region Y)-box 13; Type 1 diabetes autoantigen ICA12;)
genome : 204,085,193 - 204,095,280 (10,088)
query : 1 - 1,754 (1,754/1,754)
11 exons
identity = 0.995
5'(0.973;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR009071 : High mobility group box domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26.5, cyto_nucl 17.5, cyto 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028535)
HIX0028535
HIT000584349 (
ENST00000480326
)
(Transcription factor SOX-13; Islet cell antigen 12; SRY (Sex determining region Y)-box 13; Type 1 diabetes autoantigen ICA12;)
genome : 204,085,635 - 204,092,045 (6,411)
query : 1 - 699 (699/699)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
&nb