bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0170891
HIT000707064 (
ENST00000595269
)
(Non-protein coding transcript.)
genome : 67,375,394 - 67,526,299 (150,906)
query : 1 - 402 (402/402)
4 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0170891)
HIX0218987
HIT000355015 (
ENST00000373735
)
(Vinculin/alpha-catenin family protein.)
genome : 67,679,869 - 67,838,861 (158,993)
query : 1 - 1,083 (1,083/1,083)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 24, E.R. 3, extr 2, pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218987)
HIX0209472
HIT000615797 (
ENST00000516394
)
(Non-protein coding transcript.)
genome : 68,254,457 - 68,254,557 (101)
query : 1 - 101 (101/101)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0209472)
HIX0017706
HIT000262059
(
BC065819
)
Representative transcript
(Catenin alpha-3.)
genome : 68,280,189 - 69,425,386 (1,145,198)
query : 1 - 1,810 (1,810/1,824)
11 exons
identity = 0.998
3'(0.991;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001033 : Alpha-catenin
IPR006077 : Vinculin/alpha-catenin
GO :
0005198 : Molecular Function : structural molecule activity
0007155 : Biological Process : cell adhesion
0015629 : Cellular Component : actin cytoskeleton
0045296 : Molecular Function : cadherin binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 11.3333, cyto_mito 7.83333,
nucl 7.5, pero 4, plas 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017706)
HIX0017706
HIT000597975 (
ENST00000494580
)
(Vinculin/alpha-catenin family protein.)
genome : 68,525,913 - 68,940,201 (414,289)
query : 1 - 470 (470/470)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 21, cyto 5.5, cyto_nucl 4, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017706)
HIX0035608
HIT000096892
(
BC041845
)
Representative transcript
(Hypothetical short protein.)
genome : 68,653,869 - 68,771,911 (118,043)
query : 1 - 3,778 (3,778/3,813)
7 exons
identity = 0.996
3'(0.995;0.990;1.000;0.992;1.000;0.998;0.947)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 11, mito 6, extr 5, nucl 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0035608)
HIX0017706
HIT000427592
(
AK308726
)
(Catenin alpha-3.)
genome : 68,685,344 - 69,425,357 (740,014)
query : 1 - 1,571 (1,571/1,571)
7 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR006077 : Vinculin/alpha-catenin
GO :
0005198 : Molecular Function : structural molecule activity
0007155 : Biological Process : cell adhesion
0015629 : Cellular Component : actin cytoskeleton
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 14, nucl 8.5, cyto_mito 8.5,
cyto_pero 8.5, cyto_plas 8.5, cyto_golg 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017706)
HIX0025945
HIT000314586 (
ENST00000361320
)
(Leucine-rich repeat transmembrane neuronal protein 3; Precursor;)
genome : 68,685,764 - 68,859,588 (173,825)
query : 1 - 4,358 (4,358/4,358)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 20.5, extr_plas 12.5, extr 3.5, E.R. 3, pero 2,
lyso 2, E.R._golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025945)
HIX0025945
HIT000317977 (
NM_178011
)
(Leucine-rich repeat transmembrane neuronal protein 3; Precursor;)
genome : 68,685,792 - 68,860,867 (175,076)
query : 1 - 5,609 (5,609/5,609)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 20.5, extr_plas 12.5, extr 3.5, E.R. 3, pero 2,
lyso 2, E.R._golg 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025945)
HIX0025945
HIT000055163
(
BX640611
)
(Leucine-rich repeat transmembrane neuronal protein 3; Precursor;)
genome : 68,685,813 - 68,859,066 (173,254)
query : 1 - 3,786 (3,786/3,806)
3 exons
identity = 0.998
5'(0.998;0.999;0.998)3'
coverage = 0.999
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR001611 : Leucine-rich repeat
IPR003591 : Leucine-rich repeat, typical subtype
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 20.5, extr_plas 12.5, extr 3.5, E.R. 3, pero 2,
lyso 2, E.R._golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025945)
HIX0025945
HIT000252359
(
AY358315
)
(Leucine-rich repeat transmembrane neuronal protein 3 precursor.)
genome : 68,685,836 - 68,688,536 (2,701)
query : 1 - 2,369 (2,369/2,379)
2 exons
identity = 0.998
5'(0.996;0.999)3'
coverage = 1.000
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR001611 : Leucine-rich repeat
IPR003591 : Leucine-rich repeat, typical subtype
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 20.5, extr_plas 12, E.R. 4, extr 2.5,
E.R._golg 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025945)
HIX0025945
HIT000339919
(
BC111492
)
Representative transcript
(Leucine-rich repeat transmembrane neuronal protein 3; Precursor;)
genome : 68,685,840 - 68,859,534 (173,695)
query : 1 - 4,228 (4,228/4,369)
3 exons
identity = 1.000
5'(0.998;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR001611 : Leucine-rich repeat
IPR003591 : Leucine-rich repeat, typical subtype
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 20.5, extr_plas 12.5, extr 3.5, E.R. 3, pero 2,
lyso 2, E.R._golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025945)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB060846
Mus
sp. (Mouse) : AK035882
Bos
sp. (Cow) : BC148965
Gallus
sp. (Chicken) : CR386266
Monodelphis
sp. (Opossum) : ENSMODT00000021894
Pongo
sp. (Orangutan) : ENSPPYT00000002886
Pan
sp. (Chimpanzee) : ENSPTRT00000004761
Takifugu
sp. (Fugu) : SINFRUT00000128428
Equus
sp. (Horse) : XM_001503559
Rattus
sp. (Rat) : XM_228137
Canis
sp. (Dog) : XM_546127
HIX0025945
HIT000422965
(
AK290168
)
(Leucine-rich repeat transmembrane neuronal protein 3; Precursor;)
genome : 68,686,259 - 68,857,606 (171,348)
query : 1 - 1,881 (1,881/1,881)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR001611 : Leucine-rich repeat
IPR003591 : Leucine-rich repeat, typical subtype
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 20.5, extr_plas 12.5, extr 3.5, E.R. 3, pero 2,
lyso 2, E.R._golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025945)
HIX0025945
HIT000387170
(
BC113717
)
(Leucine-rich repeat transmembrane neuronal protein 3; Precursor;)
genome : 68,686,282 - 68,857,581 (171,300)
query : 1 - 1,833 (1,833/1,833)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR001611 : Leucine-rich repeat
IPR003591 : Leucine-rich repeat, typical subtype
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 20.5, extr_plas 12.5, extr 3.5, E.R. 3, pero 2,
lyso 2, E.R._golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025945)
HIX0025945
HIT000387168
(
BC113715
)
(Leucine-rich repeat transmembrane neuronal protein 3; Precursor;)
genome : 68,686,282 - 68,857,574 (171,293)
query : 1 - 1,826 (1,826/1,826)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR001611 : Leucine-rich repeat
IPR003591 : Leucine-rich repeat, typical subtype
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 20.5, extr_plas 12.5, extr 3.5, E.R. 3, pero 2,
lyso 2, E.R._golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025945)
HIX0025945
HIT000085057
(
AY182028
)
(Leucine-rich repeat transmembrane neuronal protein 3 precursor.)
genome : 68,686,678 - 68,688,216 (1,539)
query : 4 - 1,542 (1,539/1,542)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 0.998
InterPro :
IPR000372 : Leucine-rich repeat-containing N-terminal
IPR001611 : Leucine-rich repeat
IPR003591 : Leucine-rich repeat, typical subtype
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 20.5, extr_plas 12, E.R. 4, extr 2.5,
E.R._golg 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025945)
HIX0025945
HIT000488653
(
AK294029
)
(Leucine-rich repeat transmembrane neuronal protein 3 precursor.)
genome : 68,687,905 - 68,858,464 (170,560)
query : 1 - 1,426 (1,426/1,426)
2 exons
identity = 0.999
5'(1.000;0.999)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025945)
HIX0025945
HIT000589653 (
ENST00000485868
)
(Leucine-rich repeat transmembrane neuronal protein 3; Precursor;)
genome : 68,772,048 - 68,857,687 (85,640)
query : 1 - 449 (449/449)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, extr 6, cysk 6, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025945)
HIX0025945
HIT000576660 (
ENST00000472278
)
(Hypothetical short protein.)
genome : 68,772,076 - 68,775,216 (3,141)
query : 1 - 264 (264/264)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025945)
HIX0170742
HIT000520897 (
ENST00000422963
)
(Hypothetical short protein.)
genome : 68,812,367 - 68,814,786 (2,420)
query : 1 - 505 (505/505)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 15.5, cyto 9.5, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0170742)
HIX0035599
HIT000096312
(
BC040662
)
Representative transcript
(Conserved hypothetical protein.)
genome : 68,868,455 - 68,872,073 (3,619)
query : 4 - 3,622 (3,619/3,639)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24, cyto 4.5, cyto_nucl 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0035599)
HIX0017706
HIT000039343
(
BC022004
)
(Catenin alpha-3.)
genome : 68,935,243 - 69,425,438 (490,196)
query : 1 - 2,358 (2,358/2,374)
10 exons
identity = 0.998
3'(0.996;0.999;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001033 : Alpha-catenin
IPR006077 : Vinculin/alpha-catenin
GO :
0005198 : Molecular Function : structural molecule activity
0007155 : Biological Process : cell adhesion
0015629 : Cellular Component : actin cytoskeleton
0045296 : Molecular Function : cadherin binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12, mito 6, plas 5, cyto_mito 5, mito_pero 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017706)
HIX0017706
HIT000041087
(
BC030646
)
(Catenin alpha-3.)
genome : 68,935,243 - 69,425,438 (490,196)
query : 1 - 2,358 (2,358/2,374)
10 exons
identity = 0.998
3'(0.996;0.999;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001033 : Alpha-catenin
IPR006077 : Vinculin/alpha-catenin
GO :
0005198 : Molecular Function : structural molecule activity
0007155 : Biological Process : cell adhesion
0015629 : Cellular Component : actin cytoskeleton
0045296 : Molecular Function : cadherin binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12, mito 6, plas 5, cyto_mito 5, mito_pero 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017706)
HIX0017706
HIT000644354 (
ENST00000545309
)
(Vinculin/alpha-catenin family protein.)
genome : 68,936,659 - 69,407,271 (470,613)
query : 1 - 1,131 (1,131/1,131)
7 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, cyto_nucl 10.5, nucl 6.5, plas 4, pero 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017706)
HIX0170732
HIT000519950 (
ENST00000422016
)
(Ribosomal protein L7A/L8 family protein.)
genome : 69,093,881 - 69,094,640 (760)
query : 1 - 760 (760/760)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, cyto 13, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0170732)
HIX0219099
HIT000531145 (
ENST00000433211
)
(Catenin alpha-3; Alpha T-catenin; Cadherin-associated protein;)
genome : 67,679,719 - 69,455,927 (1,776,209)
query : 1 - 3,232 (3,232/3,232)
18 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 11.3333, cyto_mito 7.83333,
nucl 7.5, pero 4, plas 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219099)
HIX0219099
HIT000204254 (
NM_013266
)
(Catenin alpha-3; Alpha T-catenin; Cadherin-associated protein;)
genome : 67,679,725 - 69,455,949 (1,776,225)
query : 1 - 3,248 (3,248/3,248)
18 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 11.3333, cyto_mito 7.83333,
nucl 7.5, pero 4, plas 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219099)
HIX0219099
HIT000559268 (
NM_001127384
)
(Catenin alpha-3; Alpha T-catenin; Cadherin-associated protein;)
genome : 67,679,725 - 69,425,416 (1,745,692)
query : 1 - 3,174 (3,174/3,174)
18 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 11.3333, cyto_mito 7.83333,
nucl 7.5, pero 4, plas 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219099)
HIX0219099
HIT000422553
(
AK289756
)
(Catenin alpha-3; Alpha T-catenin; Cadherin-associated protein;)
genome : 67,679,725 - 69,425,379 (1,745,655)
query : 1 - 3,137 (3,137/3,137)
18 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;0.993;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001033 : Alpha-catenin
IPR006077 : Vinculin/alpha-catenin
GO :
0005198 : Molecular Function : structural molecule activity
0007155 : Biological Process : cell adhesion
0015629 : Cellular Component : actin cytoskeleton
0045296 : Molecular Function : cadherin binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, cyto_nucl 12.3333, cyto_mito 8.83333,
nucl 7.5, plas 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219099)
HIX0219099
HIT000355024 (
ENST00000373744
)
(Catenin alpha-3; Alpha T-catenin; Cadherin-associated protein;)
genome : 67,679,777 - 69,407,271 (1,727,495)
query : 1 - 2,999 (2,999/2,999)
17 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 11.3333, cyto_mito 7.83333,
nucl 7.5, pero 4, plas 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219099)
HIX0219099
HIT000068333
(
AF091606
)
Representative transcript
(Catenin alpha-3; Alpha T-catenin; Cadherin-associated protein;)
genome : 67,679,931 - 69,455,927 (1,775,997)
query : 1 - 3,020 (3,020/3,024)
18 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.999
InterPro :
IPR001033 : Alpha-catenin
IPR006077 : Vinculin/alpha-catenin
GO :
0005198 : Molecular Function : structural molecule activity
0007155 : Biological Process : cell adhesion
0015629 : Cellular Component : actin cytoskeleton
0045296 : Molecular Function : cadherin binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, cyto_nucl 12.3333, cyto_mito 8.83333,
nucl 7.5, plas 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219099)
Ortholog candidate ( ->
Evola
)
Bos
sp. (Cow) : BC126682
Danio
sp. (Zebrafish) : BC131855
Mus
sp. (Mouse) : DQ380429
Macaca
sp. (Macaque) : ENSMMUT00000042796
Pongo
sp. (Orangutan) : ENSPPYT00000002885
Takifugu
sp. (Fugu) : SINFRUT00000164605
Pan
sp. (Chimpanzee) : XM_001167065
Monodelphis
sp. (Opossum) : XM_001362652
Equus
sp. (Horse) : XM_001503560
Canis
sp. (Dog) : XM_844561
HIX0219099
HIT000432748
(
AK313882
)
(Catenin alpha-3; Alpha T-catenin; Cadherin-associated protein;)
genome : 67,680,088 - 69,455,949 (1,775,862)
query : 3 - 2,888 (2,886/2,888)
18 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;0.993;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.999
InterPro :
IPR001033 : Alpha-catenin
IPR006077 : Vinculin/alpha-catenin
GO :
0005198 : Molecular Function : structural molecule activity
0007155 : Biological Process : cell adhesion
0015629 : Cellular Component : actin cytoskeleton
0045296 : Molecular Function : cadherin binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, cyto_nucl 12.3333, cyto_mito 8.83333,
nucl 7.5, plas 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219099)
AC022538.7
67500001-67528648 F -
NCBI
AC018979.9
67528649-67730038 F +
NCBI
AC022017.8
67730039-67909272 F -
NCBI
AL592075.2
67909273-67975671 F +
NCBI
AL731538.4
67975672-68136790 F +
NCBI
AC016819.8
68136791-68268840 F +
NCBI
AL731549.11
68268841-68348693 F +
NCBI
AC020642.7
68348694-68492390 F -
NCBI
AL607023.3
68492391-68622786 F +
NCBI
AC069536.4
68622787-68791727 F +
NCBI
AL139240.9
68791728-68818046 F +
NCBI
AC022401.4
68818047-68988639 F +
NCBI
AC022534.9
68988640-69070453 F +
NCBI
AC022029.7
69070454-69100000 F +
NCBI