bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0218778
HIT000654849 (
NM_001171933
)
(Cadherin domain containing protein.)
genome : 73,555,528 - 73,575,703 (20,176)
query : 1 - 4,330 (4,330/4,341)
23 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
pero 16, plas 6, extr 4, cyto_plas 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218778)
HIX0218778
HIT000654850 (
NM_001171934
)
(Cadherin domain containing protein.)
genome : 73,555,528 - 73,575,703 (20,176)
query : 1 - 4,225 (4,225/4,236)
22 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
pero 15, extr 6, plas 5, E.R. 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218778)
HIX0218778
HIT000481932 (
ENST00000398788
)
(Cadherin domain containing protein.)
genome : 73,555,528 - 73,575,702 (20,175)
query : 1 - 4,329 (4,329/4,329)
23 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
pero 16, plas 6, extr 4, cyto_plas 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218778)
HIX0218778
HIT000255518
(
AY563165
)
Representative transcript
(Cadherin-23 isoform 6.)
genome : 73,555,528 - 73,575,417 (19,890)
query : 1 - 4,044 (4,044/4,044)
23 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
InterPro :
IPR002126 : Cadherin
IPR015919 : Cadherin-like
IPR020894 : Cadherin conserved site
GO :
0005509 : Molecular Function : calcium ion binding
0005886 : Cellular Component : plasma membrane
0007155 : Biological Process : cell adhesion
0007156 : Biological Process : homophilic cell adhesion
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
pero 16, plas 6, extr 4, cyto_plas 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218778)
HIX0218778
HIT000255519
(
AY563166
)
(Cadherin-23 isoform 7.)
genome : 73,555,528 - 73,575,417 (19,890)
query : 1 - 3,939 (3,939/3,939)
22 exons
identity = 0.999
5'(1.000)3'
coverage = 1.000
InterPro :
IPR002126 : Cadherin
IPR015919 : Cadherin-like
IPR020894 : Cadherin conserved site
GO :
0005509 : Molecular Function : calcium ion binding
0005886 : Cellular Component : plasma membrane
0007155 : Biological Process : cell adhesion
0007156 : Biological Process : homophilic cell adhesion
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
pero 15, extr 6, plas 5, E.R. 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218778)
HIX0218778
HIT000001489
(
AB053445
)
(Cadherin-23 isoform 7.)
genome : 73,556,613 - 73,575,653 (19,041)
query : 1 - 4,114 (4,114/4,114)
21 exons
identity = 1.000
5'(0.999)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
pero 15, extr 6, plas 5, E.R. 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218778)
HIX0218778
HIT000579414 (
ENST00000475158
)
(Cadherin domain containing protein.)
genome : 73,556,613 - 73,575,653 (19,041)
query : 1 - 4,114 (4,114/4,114)
21 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
pero 15, extr 6, plas 5, E.R. 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218778)
HIX0218778
HIT000654851 (
NM_001171935
)
(Conserved hypothetical protein.)
genome : 73,571,640 - 73,575,703 (4,064)
query : 1 - 1,833 (1,833/1,844)
5 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14, cyto 12.5, cyto_nucl 7.5, pero 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218778)
HIX0218778
HIT000654852 (
NM_001171936
)
(Conserved hypothetical protein.)
genome : 73,571,640 - 73,575,703 (4,064)
query : 1 - 1,728 (1,728/1,739)
4 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, cyto 11.5, cyto_nucl 9, nucl 3.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218778)
HIX0218778
HIT000255516
(
AY563161
)
(Cadherin-23 isoform 8.)
genome : 73,571,640 - 73,575,653 (4,014)
query : 1 - 1,783 (1,783/1,783)
5 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14, cyto 12.5, cyto_nucl 7.5, pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218778)
HIX0218778
HIT000255517
(
AY563162
)
(Cadherin-23 isoform 9.)
genome : 73,571,640 - 73,575,653 (4,014)
query : 1 - 1,678 (1,678/1,678)
4 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, cyto 11.5, cyto_nucl 9, nucl 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218778)
HIX0008908
HIT000033332
(
BC007612
)
(Proactivator polypeptide; Contains: Saposin-A; Protein A; Contains: Saposin-B-Val; Contains: Saposin-B; Cerebroside sulfate activator; CSAct; Dispersin; Sphingolipid activator protein 1; SAP-1; Sulfatide/GM1 activator; Contains: Saposin-C; A1 activator; Co-beta-glucosidase; Glucosylceramidase activator; Sphingolipid activator protein 2; SAP-2; Contains: Saposin-D; Component C; Protein C; Precursor;)
genome : 73,576,055 - 73,610,996 (34,942)
query : 1 - 2,736 (2,736/2,775)
14 exons
identity = 0.999
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.983)5'
coverage = 1.000
InterPro :
IPR003119 : Saposin type A
IPR007856 : Saposin-like type B, 1
IPR008138 : Saposin-like type B, 2
IPR008139 : Saposin B
IPR008373 : Saposin
IPR011001 : Saposin-like
GO :
0005764 : Cellular Component : lysosome
0006629 : Biological Process : lipid metabolic process
0006665 : Biological Process : sphingolipid metabolic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 19, E.R. 5, pero 4, extr 2, lyso 2, mito_pero 2,
cyto_pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008908)
HIX0008908
HIT000030459
(
BC001503
)
(Proactivator polypeptide; Contains: Saposin-A; Protein A; Contains: Saposin-B-Val; Contains: Saposin-B; Cerebroside sulfate activator; CSAct; Dispersin; Sphingolipid activator protein 1; SAP-1; Sulfatide/GM1 activator; Contains: Saposin-C; A1 activator; Co-beta-glucosidase; Glucosylceramidase activator; Sphingolipid activator protein 2; SAP-2; Contains: Saposin-D; Component C; Protein C; Precursor;)
genome : 73,576,055 - 73,610,983 (34,929)
query : 1 - 2,723 (2,723/2,762)
14 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003119 : Saposin type A
IPR007856 : Saposin-like type B, 1
IPR008138 : Saposin-like type B, 2
IPR008139 : Saposin B
IPR008373 : Saposin
IPR011001 : Saposin-like
GO :
0005764 : Cellular Component : lysosome
0006629 : Biological Process : lipid metabolic process
0006665 : Biological Process : sphingolipid metabolic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 19, E.R. 5, pero 4, extr 2, lyso 2, mito_pero 2,
cyto_pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008908)
HIX0008908
HIT000199653 (
NM_002778
)
(Proactivator polypeptide; Contains: Saposin-A; Protein A; Contains: Saposin-B-Val; Contains: Saposin-B; Cerebroside sulfate activator; CSAct; Dispersin; Sphingolipid activator protein 1; SAP-1; Sulfatide/GM1 activator; Contains: Saposin-C; A1 activator; Co-beta-glucosidase; Glucosylceramidase activator; Sphingolipid activator protein 2; SAP-2; Contains: Saposin-D; Component C; Protein C; Precursor;)
genome : 73,576,055 - 73,611,082 (35,028)
query : 1 - 2,822 (2,822/2,839)
14 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 19, E.R. 5, pero 4, extr 2, lyso 2, mito_pero 2,
cyto_pero 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008908)
HIX0008908
HIT000397528 (
NM_001042465
)
(Proactivator polypeptide; Contains: Saposin-A; Protein A; Contains: Saposin-B-Val; Contains: Saposin-B; Cerebroside sulfate activator; CSAct; Dispersin; Sphingolipid activator protein 1; SAP-1; Sulfatide/GM1 activator; Contains: Saposin-C; A1 activator; Co-beta-glucosidase; Glucosylceramidase activator; Sphingolipid activator protein 2; SAP-2; Contains: Saposin-D; Component C; Protein C; Precursor;)
genome : 73,576,055 - 73,611,082 (35,028)
query : 1 - 2,831 (2,831/2,848)
14 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.924;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 19, E.R. 5, pero 4, extr 2, lyso 2, mito_pero 2,
cyto_pero 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008908)
HIX0008908
HIT000397529 (
NM_001042466
)
(Proactivator polypeptide; Contains: Saposin-A; Protein A; Contains: Saposin-B-Val; Contains: Saposin-B; Cerebroside sulfate activator; CSAct; Dispersin; Sphingolipid activator protein 1; SAP-1; Sulfatide/GM1 activator; Contains: Saposin-C; A1 activator; Co-beta-glucosidase; Glucosylceramidase activator; Sphingolipid activator protein 2; SAP-2; Contains: Saposin-D; Component C; Protein C; Precursor;)
genome : 73,576,055 - 73,611,082 (35,028)
query : 1 - 2,828 (2,828/2,845)
14 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.968;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 19, E.R. 5, pero 4, extr 2, lyso 2, mito_pero 2,
cyto_pero 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008908)
HIX0008908
HIT000031837
(
BC004275
)
(Proactivator polypeptide; Contains: Saposin-A; Protein A; Contains: Saposin-B-Val; Contains: Saposin-B; Cerebroside sulfate activator; CSAct; Dispersin; Sphingolipid activator protein 1; SAP-1; Sulfatide/GM1 activator; Contains: Saposin-C; A1 activator; Co-beta-glucosidase; Glucosylceramidase activator; Sphingolipid activator protein 2; SAP-2; Contains: Saposin-D; Component C; Protein C; Precursor;)
genome : 73,576,055 - 73,610,991 (34,937)
query : 1 - 2,731 (2,731/2,748)
14 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003119 : Saposin type A
IPR007856 : Saposin-like type B, 1
IPR008138 : Saposin-like type B, 2
IPR008139 : Saposin B
IPR008373 : Saposin
IPR011001 : Saposin-like
GO :
0005764 : Cellular Component : lysosome
0006629 : Biological Process : lipid metabolic process
0006665 : Biological Process : sphingolipid metabolic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 19, E.R. 5, pero 4, extr 2, lyso 2, mito_pero 2,
cyto_pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008908)
HIX0008908
HIT000334333
(
BC091483
)
(Proactivator polypeptide; Contains: Saposin-A; Protein A; Contains: Saposin-B-Val; Contains: Saposin-B; Cerebroside sulfate activator; CSAct; Dispersin; Sphingolipid activator protein 1; SAP-1; Sulfatide/GM1 activator; Contains: Saposin-C; A1 activator; Co-beta-glucosidase; Glucosylceramidase activator; Sphingolipid activator protein 2; SAP-2; Contains: Saposin-D; Component C; Protein C; Precursor;)
genome : 73,576,055 - 73,611,030 (34,976)
query : 1 - 1,918 (1,918/1,931)
8 exons
identity = 0.993
3'(1.000;1.000;1.000;1.000;1.000;0.857;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR003119 : Saposin type A
IPR007856 : Saposin-like type B, 1
IPR008138 : Saposin-like type B, 2
IPR008139 : Saposin B
IPR008373 : Saposin
IPR011001 : Saposin-like
GO :
0005764 : Cellular Component : lysosome
0006629 : Biological Process : lipid metabolic process
0006665 : Biological Process : sphingolipid metabolic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 25, plas 3, lyso 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008908)
HIX0008908
HIT000191128
(
J03077
)
Representative transcript
(Proactivator polypeptide; Contains: Saposin-A; Protein A; Contains: Saposin-B-Val; Contains: Saposin-B; Cerebroside sulfate activator; CSAct; Dispersin; Sphingolipid activator protein 1; SAP-1; Sulfatide/GM1 activator; Contains: Saposin-C; A1 activator; Co-beta-glucosidase; Glucosylceramidase activator; Sphingolipid activator protein 2; SAP-2; Contains: Saposin-D; Component C; Protein C; Precursor;)
genome : 73,576,058 - 73,611,009 (34,952)
query : 8 - 2,761 (2,754/2,767)
14 exons
identity = 0.996
3'(0.992;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.986)5'
coverage = 0.995
InterPro :
IPR003119 : Saposin type A
IPR007856 : Saposin-like type B, 1
IPR008138 : Saposin-like type B, 2
IPR008139 : Saposin B
IPR008373 : Saposin
IPR011001 : Saposin-like
GO :
0005764 : Cellular Component : lysosome
0006629 : Biological Process : lipid metabolic process
0006665 : Biological Process : sphingolipid metabolic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 19, E.R. 5, pero 4, extr 2, lyso 2, mito_pero 2,
cyto_pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008908)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB171003
Danio
sp. (Zebrafish) : AF108655
Gallus
sp. (Chicken) : AF108656
Mus
sp. (Mouse) : AK167902
Rattus
sp. (Rat) : BC061759
Bos
sp. (Cow) : BC105409
Tetraodon
sp. (Tetraodon) : CR686651
Pongo
sp. (Orangutan) : CR861454
Oryzias
sp. (Medaka) : ENSORLT00000014344
Takifugu
sp. (Fugu) : SINFRUT00000178536
Monodelphis
sp. (Opossum) : XM_001365272
Equus
sp. (Horse) : XM_001503764
Pan
sp. (Chimpanzee) : XM_507840
Canis
sp. (Dog) : XM_856497
HIX0008908
HIT000478333 (
ENST00000394936
)
(Proactivator polypeptide; Contains: Saposin-A; Protein A; Contains: Saposin-B-Val; Contains: Saposin-B; Cerebroside sulfate activator; CSAct; Dispersin; Sphingolipid activator protein 1; SAP-1; Sulfatide/GM1 activator; Contains: Saposin-C; A1 activator; Co-beta-glucosidase; Glucosylceramidase activator; Sphingolipid activator protein 2; SAP-2; Contains: Saposin-D; Component C; Protein C; Precursor;)
genome : 73,576,055 - 73,611,126 (35,072)
query : 1 - 2,866 (2,866/2,866)
14 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 19, E.R. 5, pero 4, extr 2, lyso 2, mito_pero 2,
cyto_pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008908)
HIX0008908
HIT000014485
(
AK057878
)
(Proactivator polypeptide isoform b preproprotein.)
genome : 73,576,056 - 73,611,028 (34,973)
query : 1 - 1,683 (1,683/1,683)
14 exons
identity = 0.985
3'(0.941;0.973;1.000;1.000;1.000;1.000;1.000;
0.968;1.000;0.979;0.970;1.000;0.993;0.989)5'
coverage = 1.000
InterPro :
IPR003119 : Saposin type A
IPR007856 : Saposin-like type B, 1
IPR008138 : Saposin-like type B, 2
IPR008139 : Saposin B
IPR008373 : Saposin
IPR011001 : Saposin-like
GO :
0005764 : Cellular Component : lysosome
0006629 : Biological Process : lipid metabolic process
0006665 : Biological Process : sphingolipid metabolic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 20, E.R. 4, pero 4, extr 2, lyso 2, E.R._mito 2,
mito_pero 2, cyto_pero 2, E.R._golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008908)
HIX0008908
HIT000100400
(
D00422
)
(Proactivator polypeptide; Contains: Saposin-A; Protein A; Contains: Saposin-B-Val; Contains: Saposin-B; Cerebroside sulfate activator; CSAct; Dispersin; Sphingolipid activator protein 1; SAP-1; Sulfatide/GM1 activator; Contains: Saposin-C; A1 activator; Co-beta-glucosidase; Glucosylceramidase activator; Sphingolipid activator protein 2; SAP-2; Contains: Saposin-D; Component C; Protein C; Precursor;)
genome : 73,576,056 - 73,610,985 (34,930)
query : 2 - 2,734 (2,733/2,734)
14 exons
identity = 0.998
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
0.924;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003119 : Saposin type A
IPR007856 : Saposin-like type B, 1
IPR008138 : Saposin-like type B, 2
IPR008139 : Saposin B
IPR008373 : Saposin
IPR011001 : Saposin-like
GO :
0005764 : Cellular Component : lysosome
0006629 : Biological Process : lipid metabolic process
0006665 : Biological Process : sphingolipid metabolic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 19, E.R. 5, pero 4, extr 2, lyso 2, mito_pero 2,
cyto_pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008908)
HIX0008908
HIT000196467
(
M81355
)
(Proactivator polypeptide; Contains: Saposin-A; Protein A; Contains: Saposin-B-Val; Contains: Saposin-B; Cerebroside sulfate activator; CSAct; Dispersin; Sphingolipid activator protein 1; SAP-1; Sulfatide/GM1 activator; Contains: Saposin-C; A1 activator; Co-beta-glucosidase; Glucosylceramidase activator; Sphingolipid activator protein 2; SAP-2; Contains: Saposin-D; Component C; Protein C; Precursor;)
genome : 73,576,056 - 73,610,985 (34,930)
query : 2 - 2,734 (2,733/2,734)
14 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.924;1.000;1.000;1.000;1.000;1.000;0.979)5'
coverage = 1.000
InterPro :
IPR003119 : Saposin type A
IPR007856 : Saposin-like type B, 1
IPR008138 : Saposin-like type B, 2
IPR008139 : Saposin B
IPR008373 : Saposin
IPR011001 : Saposin-like
GO :
0005764 : Cellular Component : lysosome
0006629 : Biological Process : lipid metabolic process
0006665 : Biological Process : sphingolipid metabolic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 28, lyso 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008908)
HIX0008908
HIT000191119
(
J03015
)
(Proactivator polypeptide; Contains: Saposin-A; Protein A; Contains: Saposin-B-Val; Contains: Saposin-B; Cerebroside sulfate activator; CSAct; Dispersin; Sphingolipid activator protein 1; SAP-1; Sulfatide/GM1 activator; Contains: Saposin-C; A1 activator; Co-beta-glucosidase; Glucosylceramidase activator; Sphingolipid activator protein 2; SAP-2; Contains: Saposin-D; Component C; Protein C; Precursor;)
genome : 73,576,056 - 73,610,983 (34,928)
query : 2 - 2,724 (2,723/2,724)
14 exons
identity = 0.997
3'(0.994;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003119 : Saposin type A
IPR007856 : Saposin-like type B, 1
IPR008138 : Saposin-like type B, 2
IPR008139 : Saposin B
IPR008373 : Saposin
IPR011001 : Saposin-like
GO :
0005764 : Cellular Component : lysosome
0006629 : Biological Process : lipid metabolic process
0006665 : Biological Process : sphingolipid metabolic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 19, E.R. 5, pero 4, extr 2, lyso 2, mito_pero 2,
cyto_pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008908)
HIX0008908
HIT000195922
(
M60255
)
(Proactivator polypeptide; Contains: Saposin-A; Protein A; Contains: Saposin-B-Val; Contains: Saposin-B; Cerebroside sulfate activator; CSAct; Dispersin; Sphingolipid activator protein 1; SAP-1; Sulfatide/GM1 activator; Contains: Saposin-C; A1 activator; Co-beta-glucosidase; Glucosylceramidase activator; Sphingolipid activator protein 2; SAP-2; Contains: Saposin-D; Component C; Protein C; Precursor;)
genome : 73,576,056 - 73,610,978 (34,923)
query : 1 - 2,726 (2,726/2,726)
14 exons
identity = 0.997
3'(1.000;1.000;0.988;1.000;1.000;1.000;1.000;
0.909;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003119 : Saposin type A
IPR007856 : Saposin-like type B, 1
IPR008138 : Saposin-like type B, 2
IPR008139 : Saposin B
IPR008373 : Saposin
IPR011001 : Saposin-like
GO :
0005764 : Cellular Component : lysosome
0006629 : Biological Process : lipid metabolic process
0006665 : Biological Process : sphingolipid metabolic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 19, E.R. 5, pero 4, extr 2, lyso 2, mito_pero 2,
cyto_pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008908)
HIX0008908
HIT000195923
(
M60257
)
(Proactivator polypeptide; Contains: Saposin-A; Protein A; Contains: Saposin-B-Val; Contains: Saposin-B; Cerebroside sulfate activator; CSAct; Dispersin; Sphingolipid activator protein 1; SAP-1; Sulfatide/GM1 activator; Contains: Saposin-C; A1 activator; Co-beta-glucosidase; Glucosylceramidase activator; Sphingolipid activator protein 2; SAP-2; Contains: Saposin-D; Component C; Protein C; Precursor;)
genome : 73,576,056 - 73,610,978 (34,923)
query : 1 - 2,717 (2,717/2,717)
14 exons
identity = 0.999
3'(1.000;1.000;0.988;1.000;1.000;1.000;1.000;
0.982;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003119 : Saposin type A
IPR007856 : Saposin-like type B, 1
IPR008138 : Saposin-like type B, 2
IPR008139 : Saposin B
IPR008373 : Saposin
IPR011001 : Saposin-like
GO :
0005764 : Cellular Component : lysosome
0006629 : Biological Process : lipid metabolic process
0006665 : Biological Process : sphingolipid metabolic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 19, E.R. 5, pero 4, extr 2, lyso 2, mito_pero 2,
cyto_pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008908)
HIX0008908
HIT000195924
(
M60258
)
(Proactivator polypeptide; Contains: Saposin-A; Protein A; Contains: Saposin-B-Val; Contains: Saposin-B; Cerebroside sulfate activator; CSAct; Dispersin; Sphingolipid activator protein 1; SAP-1; Sulfatide/GM1 activator; Contains: Saposin-C; A1 activator; Co-beta-glucosidase; Glucosylceramidase activator; Sphingolipid activator protein 2; SAP-2; Contains: Saposin-D; Component C; Protein C; Precursor;)
genome : 73,576,056 - 73,610,978 (34,923)
query : 1 - 2,723 (2,723/2,723)
14 exons
identity = 0.999
3'(1.000;1.000;0.988;1.000;1.000;1.000;1.000;
0.952;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003119 : Saposin type A
IPR007856 : Saposin-like type B, 1
IPR008138 : Saposin-like type B, 2
IPR008139 : Saposin B
IPR008373 : Saposin
IPR011001 : Saposin-like
GO :
0005764 : Cellular Component : lysosome
0006629 : Biological Process : lipid metabolic process
0006665 : Biological Process : sphingolipid metabolic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 19, E.R. 5, pero 4, extr 2, lyso 2, mito_pero 2,
cyto_pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008908)
HIX0008908
HIT000478331 (
ENST00000394934
)
(Proactivator polypeptide; Contains: Saposin-A; Protein A; Contains: Saposin-B-Val; Contains: Saposin-B; Cerebroside sulfate activator; CSAct; Dispersin; Sphingolipid activator protein 1; SAP-1; Sulfatide/GM1 activator; Contains: Saposin-C; A1 activator; Co-beta-glucosidase; Glucosylceramidase activator; Sphingolipid activator protein 2; SAP-2; Contains: Saposin-D; Component C; Protein C; Precursor;)
genome : 73,576,058 - 73,611,082 (35,025)
query : 1 - 2,825 (2,825/2,825)
14 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.952;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 19, E.R. 5, pero 4, extr 2, lyso 2, mito_pero 2,
cyto_pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008908)
HIX0008908
HIT000049061_03
(
AK129790
)
(Proactivator polypeptide isoform b preproprotein.)
genome : 73,576,307 - 73,611,008 (34,702)
query : 1 - 2,317 (2,317/2,317)
15 exons
identity = 0.995
3'(1.000;0.993;1.000;1.000;1.000;0.989;1.000;
1.000;0.924;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR003119 : Saposin type A
IPR007856 : Saposin-like type B, 1
IPR008138 : Saposin-like type B, 2
IPR008139 : Saposin B
IPR008373 : Saposin
IPR011001 : Saposin-like
GO :
0005764 : Cellular Component : lysosome
0006629 : Biological Process : lipid metabolic process
0006665 : Biological Process : sphingolipid metabolic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 24, pero 2.5, lyso 2, cyto_pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008908)
HIX0008908
HIT000195459
(
M32221
)
(Proactivator polypeptide; Contains: Saposin-A; Protein A; Contains: Saposin-B-Val; Contains: Saposin-B; Cerebroside sulfate activator; CSAct; Dispersin; Sphingolipid activator protein 1; SAP-1; Sulfatide/GM1 activator; Contains: Saposin-C; A1 activator; Co-beta-glucosidase; Glucosylceramidase activator; Sphingolipid activator protein 2; SAP-2; Contains: Saposin-D; Component C; Protein C; Precursor;)
genome : 73,576,609 - 73,610,983 (34,375)
query : 2 - 2,171 (2,170/2,171)
14 exons
identity = 1.000
3'(0.998;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003119 : Saposin type A
IPR007856 : Saposin-like type B, 1
IPR008138 : Saposin-like type B, 2
IPR008139 : Saposin B
IPR008373 : Saposin
IPR011001 : Saposin-like
GO :
0005764 : Cellular Component : lysosome
0006629 : Biological Process : lipid metabolic process
0006665 : Biological Process : sphingolipid metabolic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 19, E.R. 5, pero 4, extr 2, lyso 2, mito_pero 2,
cyto_pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008908)
HIX0008908
HIT000426587
(
AK307721
)
(Saposin-C; Co-beta-glucosidase; Glucosylceramidase activator; Sphingolipid activator protein 2; SAP-2;)
genome : 73,576,810 - 73,611,006 (34,197)
query : 1 - 1,263 (1,263/1,263)
9 exons
identity = 0.998
3'(0.998;1.000;1.000;1.000;1.000;1.000;0.933;
1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003119 : Saposin type A
IPR007856 : Saposin-like type B, 1
IPR008138 : Saposin-like type B, 2
IPR008139 : Saposin B
IPR008373 : Saposin
IPR011001 : Saposin-like
GO :
0005764 : Cellular Component : lysosome
0006629 : Biological Process : lipid metabolic process
0006665 : Biological Process : sphingolipid metabolic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, extr 7.5, cyto_mito 7.5, extr_plas 6,
plas 3.5, pero 3, nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008908)
HIX0008908
HIT000331070
(
AK223290
)
(Proactivator polypeptide; Contains: Saposin-A; Protein A; Contains: Saposin-B-Val; Contains: Saposin-B; Cerebroside sulfate activator; CSAct; Dispersin; Sphingolipid activator protein 1; SAP-1; Sulfatide/GM1 activator; Contains: Saposin-C; A1 activator; Co-beta-glucosidase; Glucosylceramidase activator; Sphingolipid activator protein 2; SAP-2; Contains: Saposin-D; Component C; Protein C; Precursor;)
genome : 73,576,829 - 73,611,006 (34,178)
query : 1 - 1,972 (1,972/1,972)
14 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.993;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003119 : Saposin type A
IPR007856 : Saposin-like type B, 1
IPR008138 : Saposin-like type B, 2
IPR008139 : Saposin B
IPR008373 : Saposin
IPR011001 : Saposin-like
GO :
0005764 : Cellular Component : lysosome
0006629 : Biological Process : lipid metabolic process
0006665 : Biological Process : sphingolipid metabolic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 19, E.R. 5, pero 4, extr 2, lyso 2, mito_pero 2,
cyto_pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008908)
HIX0008908
HIT000329711
(
AB209776
)
(Proactivator polypeptide; Contains: Saposin-A; Protein A; Contains: Saposin-B-Val; Contains: Saposin-B; Cerebroside sulfate activator; CSAct; Dispersin; Sphingolipid activator protein 1; SAP-1; Sulfatide/GM1 activator; Contains: Saposin-C; A1 activator; Co-beta-glucosidase; Glucosylceramidase activator; Sphingolipid activator protein 2; SAP-2; Contains: Saposin-D; Component C; Protein C; Precursor;)
genome : 73,576,962 - 73,610,987 (34,026)
query : 1 - 1,829 (1,829/1,829)
14 exons
identity = 0.997
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.924;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003119 : Saposin type A
IPR007856 : Saposin-like type B, 1
IPR008138 : Saposin-like type B, 2
IPR008139 : Saposin B
IPR008373 : Saposin
IPR011001 : Saposin-like
GO :
0005764 : Cellular Component : lysosome
0006629 : Biological Process : lipid metabolic process
0006665 : Biological Process : sphingolipid metabolic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 19, E.R. 5, pero 4, extr 2, lyso 2, mito_pero 2,
cyto_pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008908)
HIX0008908
HIT000488296
(
AK293672
)
(Saposin-B-Val; Contains: Saposin-B; Cerebroside sulfate activator; CS-ACT; Non-specific activator; Sphingolipid activator protein 1; SAP-1;)
genome : 73,576,980 - 73,611,006 (34,027)
query : 1 - 1,771 (1,771/1,771)
14 exons
identity = 0.986
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.924;1.000;0.995;1.000;1.000;1.000;0.827)5'
coverage = 1.000
InterPro :
IPR003119 : Saposin type A
IPR007856 : Saposin-like type B, 1
IPR008138 : Saposin-like type B, 2
IPR008139 : Saposin B
IPR008373 : Saposin
IPR011001 : Saposin-like
GO :
0005764 : Cellular Component : lysosome
0006629 : Biological Process : lipid metabolic process
0006665 : Biological Process : sphingolipid metabolic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21.5, cyto_mito 12, pero 4, extr 2, mito 1.5,
extr_plas 1.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008908)
HIX0008908
HIT000493808
(
AK299184
)
(Proactivator polypeptide; Contains: Saposin-A; Protein A; Contains: Saposin-B-Val; Contains: Saposin-B; Cerebroside sulfate activator; CSAct; Dispersin; Sphingolipid activator protein 1; SAP-1; Sulfatide/GM1 activator; Contains: Saposin-C; A1 activator; Co-beta-glucosidase; Glucosylceramidase activator; Sphingolipid activator protein 2; SAP-2; Contains: Saposin-D; Component C; Protein C; Precursor;)
genome : 73,577,037 - 73,611,042 (34,006)
query : 1 - 1,809 (1,809/1,809)
14 exons
identity = 0.994
3'(1.000;1.000;1.000;0.994;0.995;1.000;0.992;
0.924;1.000;1.000;0.992;0.987;0.993;1.000)5'
coverage = 1.000
InterPro :
IPR003119 : Saposin type A
IPR007856 : Saposin-like type B, 1
IPR008138 : Saposin-like type B, 2
IPR008139 : Saposin B
IPR008373 : Saposin
IPR011001 : Saposin-like
GO :
0005764 : Cellular Component : lysosome
0006629 : Biological Process : lipid metabolic process
0006665 : Biological Process : sphingolipid metabolic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 19, E.R. 5, pero 4, extr 2, lyso 2, mito_pero 2,
cyto_pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008908)
HIX0008908
HIT000099769
(
BT006849
)
(Proactivator polypeptide; Contains: Saposin-A; Protein A; Contains: Saposin-B-Val; Contains: Saposin-B; Cerebroside sulfate activator; CSAct; Dispersin; Sphingolipid activator protein 1; SAP-1; Sulfatide/GM1 activator; Contains: Saposin-C; A1 activator; Co-beta-glucosidase; Glucosylceramidase activator; Sphingolipid activator protein 2; SAP-2; Contains: Saposin-D; Component C; Protein C; Precursor;)
genome : 73,577,198 - 73,610,978 (33,781)
query : 1 - 1,575 (1,575/1,575)
14 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003119 : Saposin type A
IPR007856 : Saposin-like type B, 1
IPR008138 : Saposin-like type B, 2
IPR008139 : Saposin B
IPR008373 : Saposin
IPR011001 : Saposin-like
GO :
0005764 : Cellular Component : lysosome
0006629 : Biological Process : lipid metabolic process
0006665 : Biological Process : sphingolipid metabolic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 19, E.R. 5, pero 4, extr 2, lyso 2, mito_pero 2,
cyto_pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008908)
HIX0008908
HIT000267596
(
CR456746
)
(Proactivator polypeptide; Contains: Saposin-A; Protein A; Contains: Saposin-B-Val; Contains: Saposin-B; Cerebroside sulfate activator; CSAct; Dispersin; Sphingolipid activator protein 1; SAP-1; Sulfatide/GM1 activator; Contains: Saposin-C; A1 activator; Co-beta-glucosidase; Glucosylceramidase activator; Sphingolipid activator protein 2; SAP-2; Contains: Saposin-D; Component C; Protein C; Precursor;)
genome : 73,577,199 - 73,610,978 (33,780)
query : 1 - 1,574 (1,574/1,575)
14 exons
identity = 0.998
3'(0.971;1.000;1.000;1.000;0.995;1.000;1.000;
1.000;0.993;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.999
InterPro :
IPR003119 : Saposin type A
IPR007856 : Saposin-like type B, 1
IPR008138 : Saposin-like type B, 2
IPR008139 : Saposin B
IPR008373 : Saposin
IPR011001 : Saposin-like
GO :
0005764 : Cellular Component : lysosome
0006629 : Biological Process : lipid metabolic process
0006665 : Biological Process : sphingolipid metabolic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 19, E.R. 5, pero 4, extr 2, lyso 2, mito_pero 2,
cyto_pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008908)
HIX0008908
HIT000598568 (
ENST00000495196
)
(Proactivator polypeptide; Contains: Saposin-A; Protein A; Contains: Saposin-B; Cerebroside sulfate activator; CSAct; Dispersin; Sphingolipid activator protein 1; SAP-1; Sulfatide/GM1 activator; Contains: Saposin-C; A1 activator; Co-beta-glucosidase; Glucosylceramidase activator; Sphingolipid activator protein 2; SAP-2; Contains: Saposin-D; Component C; Protein C; Precursor;)
genome : 73,578,379 - 73,579,028 (650)
query : 1 - 344 (344/344)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto 6, plas 5, nucl 3, cyto_pero 3,
cyto_golg 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008908)
HIX0008908
HIT000454139
(
DQ587608
)
(Non-protein coding transcript.)
genome : 73,578,826 - 73,578,855 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008908)
HIX0008908
HIT000596594 (
ENST00000493143
)
(Proactivator polypeptide; Contains: Saposin-A; Protein A; Contains: Saposin-B-Val; Contains: Saposin-B; Cerebroside sulfate activator; CSAct; Dispersin; Sphingolipid activator protein 1; SAP-1; Sulfatide/GM1 activator; Contains: Saposin-C; A1 activator; Co-beta-glucosidase; Glucosylceramidase activator; Sphingolipid activator protein 2; SAP-2; Contains: Saposin-D; Component C; Protein C; Precursor;)
genome : 73,579,508 - 73,581,962 (2,455)
query : 1 - 576 (576/576)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto 7.5, cyto_nucl 7, nucl 3.5, mito 2,
golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008908)
HIX0008908
HIT000194177
(
M12710
)
(Proactivator polypeptide; Contains: Saposin-A; Protein A; Contains: Saposin-B-Val; Contains: Saposin-B; Cerebroside sulfate activator; CSAct; Dispersin; Sphingolipid activator protein 1; SAP-1; Sulfatide/GM1 activator; Contains: Saposin-C; A1 activator; Co-beta-glucosidase; Glucosylceramidase activator; Sphingolipid activator protein 2; SAP-2; Contains: Saposin-D; Component C; Protein C; Precursor;)
genome : 73,585,594 - 73,587,908 (2,315)
query : 1 - 195 (195/207)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 0.942
InterPro :
IPR007856 : Saposin-like type B, 1
IPR008138 : Saposin-like type B, 2
IPR008139 : Saposin B
IPR008373 : Saposin
IPR011001 : Saposin-like
GO :
0005764 : Cellular Component : lysosome
0006629 : Biological Process : lipid metabolic process
0006665 : Biological Process : sphingolipid metabolic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, cyto 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0008908)
HIX0219084
HIT000208621 (
NM_022124
)
(Cadherin-23; Otocadherin; Precursor;)
genome : 73,156,691 - 73,575,703 (419,013)
query : 1 - 11,123 (11,123/11,134)
68 exons
identity = 0.999
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 28, E.R. 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219084)
HIX0219084
HIT000103844 (
ENST00000224721
)
(Cadherin-23; Otocadherin; Precursor;)
genome : 73,199,584 - 73,575,035 (375,452)
query : 1 - 10,085 (10,085/10,085)
67 exons
identity = 0.999
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219084)
HIX0219084
HIT000077028
(
AF312024
)
Representative transcript
(Cadherin-23; Otocadherin; Precursor;)
genome : 73,199,589 - 73,575,035 (375,447)
query : 1 - 10,065 (10,065/10,065)
67 exons
identity = 0.998
5'(1.000)3'
coverage = 1.000
InterPro :
IPR002126 : Cadherin
IPR015919 : Cadherin-like
IPR020894 : Cadherin conserved site
GO :
0005509 : Molecular Function : calcium ion binding
0005886 : Cellular Component : plasma membrane
0007155 : Biological Process : cell adhesion
0007156 : Biological Process : homophilic cell adhesion
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219084)
Ortholog candidate ( ->
Evola
)
Rattus
sp. (Rat) : AB053447
Mus
sp. (Mouse) : AJ888001
Bos
sp. (Cow) : ENSBTAT00000028652
Canis
sp. (Dog) : ENSCAFT00000022666
Danio
sp. (Zebrafish) : ENSDART00000016602
Oryzias
sp. (Medaka) : ENSORLT00000016841
Pongo
sp. (Orangutan) : ENSPPYT00000002834
Takifugu
sp. (Fugu) : SINFRUT00000146814
Monodelphis
sp. (Opossum) : XM_001365007
Equus
sp. (Horse) : XM_001917698
Gallus
sp. (Chicken) : XM_421595
Pan
sp. (Chimpanzee) : XM_507839
Macaca
sp. (Macaque) : XR_013331
HIX0219084
HIT000083170
(
AY010111
)
(Cadherin-23; Otocadherin; Precursor;)
genome : 73,199,589 - 73,575,035 (375,447)
query : 1 - 10,065 (10,065/10,065)
67 exons
identity = 0.998
5'(1.000)3'
coverage = 1.000
InterPro :
IPR002126 : Cadherin
IPR015919 : Cadherin-like
IPR020894 : Cadherin conserved site
GO :
0005509 : Molecular Function : calcium ion binding
0005886 : Cellular Component : plasma membrane
0007155 : Biological Process : cell adhesion
0007156 : Biological Process : homophilic cell adhesion
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0219084)
AL731541.6
73573590-73593240 F +
NCBI
AC073370.7
73593241-73613589 F +
NCBI