bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0172119
HIT000530754 (
ENST00000432820
)
(Nucleosome assembly protein (NAP) family protein.)
genome : 48,337,595 - 48,338,741 (1,147)
query : 1 - 1,147 (1,147/1,147)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21.5, cyto_nucl 16, nucl 9.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0172119)
HIX0172045
HIT000522211 (
ENST00000424277
)
(Conserved hypothetical protein.)
genome : 48,340,775 - 48,341,220 (446)
query : 1 - 446 (446/446)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, nucl 9, mito 6, cyto_nucl 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0172045)
HIX0171990
HIT000515921 (
ENST00000417987
)
(Hypothetical short protein.)
genome : 48,399,465 - 48,410,091 (10,627)
query : 1 - 411 (411/411)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 28, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0171990)
HIX0172146
HIT000533551 (
ENST00000435617
)
(Non-protein coding transcript.)
genome : 48,479,464 - 48,481,492 (2,029)
query : 1 - 215 (215/215)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0172146)
HIX0220865
HIT000679423 (
ENST00000566385
)
(Conserved hypothetical protein.)
genome : 48,504,290 - 48,506,757 (2,468)
query : 1 - 2,468 (2,468/2,468)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 28, mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220865)
HIX0026552
HIT000043019
(
AK123146
)
(Conserved hypothetical protein.)
genome : 48,504,290 - 48,506,757 (2,468)
query : 1 - 2,472 (2,472/2,472)
1 exon
identity = 0.990
3'(0.990)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 21, extr 6.5, extr_plas 4, nucl 1, cyto 1,
E.R. 1, cyto_nucl 1, lyso 1
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026552)
HIX0026552
HIT000047620
(
AK127747
)
Representative transcript
(Conserved hypothetical protein.)
genome : 48,506,434 - 48,509,188 (2,755)
query : 1 - 2,755 (2,755/2,755)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 11, extr 7.5, cyto 6, extr_plas 5.5,
mito_nucl 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026552)
HIX0220752
HIT000596601 (
ENST00000493152
)
(ATP-citrate lyase/succinyl-CoA ligase domain containing protein.)
genome : 48,510,622 - 48,523,696 (13,075)
query : 1 - 556 (556/556)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, mito 10, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220752)
HIX0220752
HIT000588767 (
ENST00000484941
)
(Hypothetical short protein.)
genome : 48,510,634 - 48,513,498 (2,865)
query : 1 - 372 (372/372)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, mito 7, nucl 6.5, cyto_nucl 6.5, cyto 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220752)
HIX0220752
HIT000585256 (
ENST00000481279
)
(Conserved hypothetical protein.)
genome : 48,510,753 - 48,520,074 (9,322)
query : 1 - 467 (467/467)
3 exons
identity = 0.998
3'(1.000;1.000;0.995)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 23, cyto 4.5, cyto_nucl 4.5, nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220752)
HIX0220752
HIT000024217
(
AL080096
)
Representative transcript
(Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial; EC=6.2.1.5; ATP-specific succinyl-CoA synthetase subunit beta; Renal carcinoma antigen NY-REN-39; Succinyl-CoA synthetase beta-A chain; SCS-betaA; Precursor;)
genome : 48,516,791 - 48,542,777 (25,987)
query : 1 - 1,353 (1,353/1,372)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.2.1.5
KEGG pathway :
00020 : Citrate cycle (TCA cycle) (22)
00640 : Propanoate metabolism (45)
00660 : C5-Branched dibasic acid metabolism (18)
00720 : Carbon fixation pathways in prokaryotes (41)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
01120 : Microbial metabolism in diverse environments (468)
InterPro :
IPR005809 : Succinyl-CoA synthetase, beta subunit
IPR005811 : ATP-citrate lyase/succinyl-CoA ligase
IPR013816 : ATP-grasp fold, subdomain 2
IPR016102 : Succinyl-CoA synthetase-like
IPR017866 : Succinyl-CoA synthetase, beta subunit, conserved site
GO :
0003824 : Molecular Function : catalytic activity
0005524 : Molecular Function : ATP binding
0008152 : Biological Process : metabolic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 11.5, cyto_mito 10.3333, mito 8,
E.R._mito 5.33333, plas 4, extr 2, nucl 2, lyso 2, cysk_plas 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220752)
HIX0220752
HIT000018373
(
AK093506
)
(Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial; EC=6.2.1.5; ATP-specific succinyl-CoA synthetase subunit beta; Renal carcinoma antigen NY-REN-39; Succinyl-CoA synthetase beta-A chain; SCS-betaA; Precursor;)
genome : 48,517,358 - 48,537,077 (19,720)
query : 1 - 1,911 (1,911/1,911)
5 exons
identity = 0.998
3'(1.000;1.000;1.000;0.998;0.998)5'
coverage = 1.000
EC number :
EC 6.2.1.5
KEGG pathway :
00020 : Citrate cycle (TCA cycle) (22)
00640 : Propanoate metabolism (45)
00660 : C5-Branched dibasic acid metabolism (18)
00720 : Carbon fixation pathways in prokaryotes (41)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
01120 : Microbial metabolism in diverse environments (468)
InterPro :
IPR005809 : Succinyl-CoA synthetase, beta subunit
IPR005811 : ATP-citrate lyase/succinyl-CoA ligase
IPR016102 : Succinyl-CoA synthetase-like
GO :
0003824 : Molecular Function : catalytic activity
0008152 : Biological Process : metabolic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 11.5, cyto_mito 11.3333, mito 10,
E.R._mito 6.33333, cyto_pero 6.33333, cyto_golg 6.33333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220752)
HIX0220752
HIT000571838 (
ENST00000467222
)
(Succinyl-CoA synthetase, beta subunit family protein.)
genome : 48,517,496 - 48,528,689 (11,194)
query : 1 - 710 (710/710)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 11.5, cyto_mito 11.3333, mito 10,
E.R._mito 6.33333, cyto_pero 6.33333, cyto_golg 6.33333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220752)
HIX0220752
HIT000600488 (
ENST00000497202
)
(ATP-grasp fold, succinyl-CoA synthetase-type domain containing protein.)
genome : 48,542,763 - 48,575,402 (32,640)
query : 1 - 863 (863/863)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, cyto_nucl 11.6667, cyto_plas 8.5, extr 6,
nucl 4, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220752)
HIX0220752
HIT000575220 (
ENST00000470760
)
(Succinyl-CoA synthetase, beta subunit family protein.)
genome : 48,562,405 - 48,575,409 (13,005)
query : 1 - 809 (809/809)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220752)
HIX0037476
HIT000091870
(
BC029610
)
Representative transcript
(Conserved hypothetical protein.)
genome : 48,575,525 - 48,576,745 (1,221)
query : 1 - 609 (609/624)
2 exons
identity = 0.998
5'(0.998;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24, nucl 4.5, cyto_nucl 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037476)
HIX0037476
HIT000521803 (
ENST00000423869
)
(Conserved hypothetical protein.)
genome : 48,575,525 - 48,576,688 (1,164)
query : 1 - 552 (552/552)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24, nucl 4.5, cyto_nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037476)
HIX0171911
HIT000464455_03
(
DQ597924
)
Representative transcript
(Non-protein coding transcript.)
genome : 48,606,092 - 48,606,121 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0171911)
HIX0011305
HIT000107345 (
ENST00000258662
)
(Probable 8-oxo-dGTP diphosphatase NUDT15; 8-oxo-dGTPase NUDT15; EC=3.6.1.55; 7,8-dihydro-8-oxoguanine-triphosphatase NUDT15; MutT homolog 2; MTH2; Nucleoside diphosphate-linked moiety X motif 15; Nudix motif 15;)
genome : 48,611,703 - 48,621,358 (9,656)
query : 1 - 2,098 (2,098/2,098)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, cyto 8, mito_pero 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011305)
HIX0011305
HIT000004292
(
AK001818
)
Representative transcript
(Probable 8-oxo-dGTP diphosphatase NUDT15; 8-oxo-dGTPase NUDT15; EC=3.6.1.55; 7,8-dihydro-8-oxoguanine-triphosphatase NUDT15; MutT homolog 2; MTH2; Nucleoside diphosphate-linked moiety X motif 15; Nudix motif 15;)
genome : 48,611,703 - 48,621,282 (9,580)
query : 1 - 2,022 (2,022/2,022)
3 exons
identity = 0.999
5'(1.000;1.000;0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, cyto 8, mito_pero 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011305)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK040749
Gallus
sp. (Chicken) : CR386374
Canis
sp. (Dog) : ENSCAFT00000007172
Equus
sp. (Horse) : ENSECAT00000010251
Oryzias
sp. (Medaka) : ENSORLT00000005128
Pongo
sp. (Orangutan) : ENSPPYT00000006337
Rattus
sp. (Rat) : ENSRNOT00000038436
Tetraodon
sp. (Tetraodon) : GSTENT00019607001
Takifugu
sp. (Fugu) : SINFRUT00000162214
Pan
sp. (Chimpanzee) : XM_001151276
Danio
sp. (Zebrafish) : XM_001330832
Monodelphis
sp. (Opossum) : XM_001378850
Bos
sp. (Cow) : XM_593296
Macaca
sp. (Macaque) : XR_012104
HIX0011305
HIT000207103 (
NM_018283
)
(Probable 8-oxo-dGTP diphosphatase NUDT15; 8-oxo-dGTPase NUDT15; EC=3.6.1.55; 7,8-dihydro-8-oxoguanine-triphosphatase NUDT15; MutT homolog 2; MTH2; Nucleoside diphosphate-linked moiety X motif 15; Nudix motif 15;)
genome : 48,611,703 - 48,621,282 (9,580)
query : 1 - 2,022 (2,022/2,022)
3 exons
identity = 0.999
5'(1.000;1.000;0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, cyto 8, mito_pero 8
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011305)
HIX0011305
HIT000391066
(
BC133015
)
(Probable 8-oxo-dGTP diphosphatase NUDT15; 8-oxo-dGTPase NUDT15; EC=3.6.1.55; 7,8-dihydro-8-oxoguanine-triphosphatase NUDT15; MutT homolog 2; MTH2; Nucleoside diphosphate-linked moiety X motif 15; Nudix motif 15;)
genome : 48,611,762 - 48,620,984 (9,223)
query : 1 - 1,665 (1,665/1,665)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000086 : NUDIX hydrolase domain
IPR015797 : NUDIX hydrolase domain-like
GO :
0016787 : Molecular Function : hydrolase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, cyto 8, mito_pero 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011305)
HIX0011305
HIT000391068
(
BC133017
)
(Probable 8-oxo-dGTP diphosphatase NUDT15; 8-oxo-dGTPase NUDT15; EC=3.6.1.55; 7,8-dihydro-8-oxoguanine-triphosphatase NUDT15; MutT homolog 2; MTH2; Nucleoside diphosphate-linked moiety X motif 15; Nudix motif 15;)
genome : 48,611,762 - 48,620,984 (9,223)
query : 1 - 1,666 (1,666/1,666)
3 exons
identity = 0.999
5'(1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR000086 : NUDIX hydrolase domain
IPR015797 : NUDIX hydrolase domain-like
GO :
0016787 : Molecular Function : hydrolase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, cyto 8, mito_pero 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011305)
HIX0011305
HIT000338963
(
BC107875
)
(Probable 8-oxo-dGTP diphosphatase NUDT15; 8-oxo-dGTPase NUDT15; EC=3.6.1.55; 7,8-dihydro-8-oxoguanine-triphosphatase NUDT15; MutT homolog 2; MTH2; Nucleoside diphosphate-linked moiety X motif 15; Nudix motif 15;)
genome : 48,611,830 - 48,621,283 (9,454)
query : 1 - 1,896 (1,896/1,923)
3 exons
identity = 0.998
5'(0.995;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR000086 : NUDIX hydrolase domain
IPR015797 : NUDIX hydrolase domain-like
GO :
0016787 : Molecular Function : hydrolase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, cyto 8, mito_pero 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011305)
HIX0011305
HIT000259175
(
BC050698
)
(Probable 8-oxo-dGTP diphosphatase NUDT15; 8-oxo-dGTPase NUDT15; EC=3.6.1.55; 7,8-dihydro-8-oxoguanine-triphosphatase NUDT15; MutT homolog 2; MTH2; Nucleoside diphosphate-linked moiety X motif 15; Nudix motif 15;)
genome : 48,611,875 - 48,615,637 (3,763)
query : 1 - 748 (748/762)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000086 : NUDIX hydrolase domain
IPR015797 : NUDIX hydrolase domain-like
GO :
0016787 : Molecular Function : hydrolase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 16, cyto 11.5, cyto_nucl 7, extr 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011305)
HIX0011305
HIT000261526
(
BC064607
)
(Probable 8-oxo-dGTP diphosphatase NUDT15; 8-oxo-dGTPase NUDT15; EC=3.6.1.55; 7,8-dihydro-8-oxoguanine-triphosphatase NUDT15; MutT homolog 2; MTH2; Nucleoside diphosphate-linked moiety X motif 15; Nudix motif 15;)
genome : 48,611,884 - 48,621,357 (9,474)
query : 1 - 1,916 (1,916/1,934)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 0.998
InterPro :
IPR000086 : NUDIX hydrolase domain
IPR015797 : NUDIX hydrolase domain-like
GO :
0016787 : Molecular Function : hydrolase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, cyto 8, mito_pero 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011305)
HIX0011307
HIT000598392 (
ENST00000495013
)
(Mediator of RNA polymerase II transcription subunit 4; Activator-recruited cofactor 36 kDa component; ARC36; Mediator complex subunit 4; TRAP/SMCC/PC2 subunit p36 subunit; Vitamin D3 receptor-interacting protein complex 36 kDa component; DRIP36;)
genome : 48,627,459 - 48,654,111 (26,653)
query : 1 - 460 (460/460)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto_nucl 16, cyto 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011307)
HIX0011306
HIT000015900
(
AK091033
)
Representative transcript
(Conserved hypothetical protein.)
genome : 48,627,960 - 48,630,259 (2,300)
query : 1 - 2,300 (2,300/2,300)
1 exon
identity = 0.998
5'(0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 29, nucl 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011306)
HIX0011307
HIT000204571 (
NM_014166
)
(Mediator of RNA polymerase II transcription subunit 4; Activator-recruited cofactor 36 kDa component; ARC36; Mediator complex subunit 4; TRAP/SMCC/PC2 subunit p36 subunit; Vitamin D3 receptor-interacting protein complex 36 kDa component; DRIP36;)
genome : 48,649,864 - 48,669,277 (19,414)
query : 1 - 2,287 (2,287/2,287)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16, cyto 13.5, nucl 11.5, extr 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011307)
HIX0011307
HIT000724781 (
NM_001270629
)
(Mediator of RNA polymerase II transcription subunit 4 isoform 2.)
genome : 48,649,864 - 48,669,277 (19,414)
query : 1 - 2,181 (2,181/2,181)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 19, cyto 15.5, nucl 13.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011307)
HIX0011307
HIT000004408
(
AK001934
)
Representative transcript
(Mediator of RNA polymerase II transcription subunit 4; Activator-recruited cofactor 36 kDa component; ARC36; Mediator complex subunit 4; TRAP/SMCC/PC2 subunit p36 subunit; Vitamin D3 receptor-interacting protein complex 36 kDa component; DRIP36;)
genome : 48,650,092 - 48,669,240 (19,149)
query : 1 - 2,022 (2,022/2,022)
7 exons
identity = 1.000
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16, cyto 13.5, nucl 11.5, extr 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011307)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB174170
Mus
sp. (Mouse) : AK145636
Danio
sp. (Zebrafish) : BC092965
Rattus
sp. (Rat) : BC093402
Bos
sp. (Cow) : BC103312
Gallus
sp. (Chicken) : BX930642
Monodelphis
sp. (Opossum) : ENSMODT00000014283
Oryzias
sp. (Medaka) : ENSORLT00000017648
Pongo
sp. (Orangutan) : ENSPPYT00000006338
Tetraodon
sp. (Tetraodon) : GSTENT00005938001
Takifugu
sp. (Fugu) : SINFRUT00000131564
Pan
sp. (Chimpanzee) : XM_001151408
Equus
sp. (Horse) : XM_001489904
Canis
sp. (Dog) : XM_534120
HIX0011307
HIT000107338 (
ENST00000258648
)
(Mediator of RNA polymerase II transcription subunit 4; Activator-recruited cofactor 36 kDa component; ARC36; Mediator complex subunit 4; TRAP/SMCC/PC2 subunit p36 subunit; Vitamin D3 receptor-interacting protein complex 36 kDa component; DRIP36;)
genome : 48,650,092 - 48,669,240 (19,149)
query : 1 - 2,022 (2,022/2,022)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16, cyto 13.5, nucl 11.5, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011307)
HIX0011307
HIT000496459
(
AK301835
)
(Mediator of RNA polymerase II transcription subunit 4 isoform 2.)
genome : 48,650,253 - 48,669,251 (18,999)
query : 1 - 1,766 (1,766/1,766)
7 exons
identity = 0.999
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR019258 : Mediator complex, subunit Med4
GO :
0001104 : Molecular Function : RNA polymerase II transcription cofactor activity
0006357 : Biological Process : regulation of transcription from RNA polymerase II promoter
0016592 : Cellular Component : mediator complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 19, cyto 15.5, nucl 13.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011307)
HIX0011307
HIT000002077
(
AF161475
)
(Mediator of RNA polymerase II transcription subunit 4; Activator-recruited cofactor 36 kDa component; ARC36; Mediator complex subunit 4; TRAP/SMCC/PC2 subunit p36 subunit; Vitamin D3 receptor-interacting protein complex 36 kDa component; DRIP36;)
genome : 48,650,716 - 48,669,238 (18,523)
query : 2 - 1,396 (1,395/1,424)
7 exons
identity = 0.999
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16, cyto 13.5, nucl 11.5, extr 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011307)
HIX0011307
HIT000032276
(
BC005189
)
(Mediator of RNA polymerase II transcription subunit 4; Activator-recruited cofactor 36 kDa component; ARC36; Mediator complex subunit 4; TRAP/SMCC/PC2 subunit p36 subunit; Vitamin D3 receptor-interacting protein complex 36 kDa component; DRIP36;)
genome : 48,650,718 - 48,669,251 (18,534)
query : 1 - 1,407 (1,407/1,436)
7 exons
identity = 0.998
3'(0.999;1.000;1.000;1.000;0.994;0.985;1.000)5'
coverage = 0.999
InterPro :
IPR019258 : Mediator complex, subunit Med4
GO :
0001104 : Molecular Function : RNA polymerase II transcription cofactor activity
0006357 : Biological Process : regulation of transcription from RNA polymerase II promoter
0016592 : Cellular Component : mediator complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16.5, cyto 14.5, nucl 11.5, extr 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011307)
HIX0011307
HIT000076641
(
AF300618
)
(Mediator of RNA polymerase II transcription subunit 4; Activator-recruited cofactor 36 kDa component; ARC36; Mediator complex subunit 4; TRAP/SMCC/PC2 subunit p36 subunit; Vitamin D3 receptor-interacting protein complex 36 kDa component; DRIP36;)
genome : 48,650,716 - 48,669,214 (18,499)
query : 1 - 1,372 (1,372/1,389)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.999
InterPro :
IPR019258 : Mediator complex, subunit Med4
GO :
0001104 : Molecular Function : RNA polymerase II transcription cofactor activity
0006357 : Biological Process : regulation of transcription from RNA polymerase II promoter
0016592 : Cellular Component : mediator complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16, cyto 13.5, nucl 11.5, extr 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011307)
HIX0011307
HIT000359866 (
ENST00000378586
)
(Mediator of RNA polymerase II transcription subunit 4 isoform 2.)
genome : 48,651,104 - 48,669,267 (18,164)
query : 1 - 931 (931/931)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 19, cyto 15.5, nucl 13.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011307)
HIX0011307
HIT000591613 (
ENST00000487937
)
(Mediator of RNA polymerase II transcription subunit 4 isoform 2.)
genome : 48,651,154 - 48,669,238 (18,085)
query : 1 - 747 (747/747)
5 exons
identity = 0.996
3'(1.000;1.000;0.975;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 27, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011307)
HIX0011307
HIT000330797
(
AK223017
)
(Mediator of RNA polymerase II transcription subunit 4; Activator-recruited cofactor 36 kDa component; ARC36; Mediator complex subunit 4; TRAP/SMCC/PC2 subunit p36 subunit; Vitamin D3 receptor-interacting protein complex 36 kDa component; DRIP36;)
genome : 48,651,181 - 48,669,232 (18,052)
query : 1 - 925 (925/925)
7 exons
identity = 0.997
3'(0.996;1.000;1.000;0.983;0.994;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR019258 : Mediator complex, subunit Med4
GO :
0001104 : Molecular Function : RNA polymerase II transcription cofactor activity
0006357 : Biological Process : regulation of transcription from RNA polymerase II promoter
0016592 : Cellular Component : mediator complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16, cyto 13.5, nucl 11.5, extr 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011307)
HIX0011307
HIT000330493
(
AK222713
)
(Mediator of RNA polymerase II transcription subunit 4; Activator-recruited cofactor 36 kDa component; ARC36; Mediator complex subunit 4; TRAP/SMCC/PC2 subunit p36 subunit; Vitamin D3 receptor-interacting protein complex 36 kDa component; DRIP36;)
genome : 48,651,271 - 48,669,240 (17,970)
query : 1 - 843 (843/843)
7 exons
identity = 0.998
3'(0.994;0.992;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR019258 : Mediator complex, subunit Med4
GO :
0001104 : Molecular Function : RNA polymerase II transcription cofactor activity
0006357 : Biological Process : regulation of transcription from RNA polymerase II promoter
0016592 : Cellular Component : mediator complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16, nucl 12.5, cyto 12.5, extr 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011307)
HIX0172032
HIT000726779 (
NR_046511
)
(Conserved hypothetical protein.)
genome : 48,651,273 - 48,654,129 (2,857)
query : 1 - 544 (544/544)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0172032)
HIX0172032
HIT000520417 (
ENST00000422483
)
(Conserved hypothetical protein.)
genome : 48,651,273 - 48,654,127 (2,855)
query : 1 - 542 (542/542)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0172032)
HIX0011307
HIT000074559
(
AF230381
)
(Mediator of RNA polymerase II transcription subunit 4; Activator-recruited cofactor 36 kDa component; ARC36; Mediator complex subunit 4; TRAP/SMCC/PC2 subunit p36 subunit; Vitamin D3 receptor-interacting protein complex 36 kDa component; DRIP36;)
genome : 48,651,275 - 48,669,214 (17,940)
query : 1 - 813 (813/813)
7 exons
identity = 0.995
3'(0.988;0.985;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR019258 : Mediator complex, subunit Med4
GO :
0001104 : Molecular Function : RNA polymerase II transcription cofactor activity
0006357 : Biological Process : regulation of transcription from RNA polymerase II promoter
0016592 : Cellular Component : mediator complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16.5, cyto 14.5, nucl 11.5, extr 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011307)
HIX0011307
HIT000268126
(
CR457276
)
(Mediator of RNA polymerase II transcription subunit 4; Activator-recruited cofactor 36 kDa component; ARC36; Mediator complex subunit 4; TRAP/SMCC/PC2 subunit p36 subunit; Vitamin D3 receptor-interacting protein complex 36 kDa component; DRIP36;)
genome : 48,651,277 - 48,669,214 (17,938)
query : 1 - 811 (811/813)
7 exons
identity = 0.999
3'(1.000;1.000;0.989;1.000;1.000;1.000;1.000)5'
coverage = 0.998
InterPro :
IPR019258 : Mediator complex, subunit Med4
GO :
0001104 : Molecular Function : RNA polymerase II transcription cofactor activity
0006357 : Biological Process : regulation of transcription from RNA polymerase II promoter
0016592 : Cellular Component : mediator complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16, cyto 13.5, nucl 11.5, extr 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011307)
HIX0011307
HIT000268701
(
CR541830
)
(Mediator of RNA polymerase II transcription subunit 4; Activator-recruited cofactor 36 kDa component; ARC36; Mediator complex subunit 4; TRAP/SMCC/PC2 subunit p36 subunit; Vitamin D3 receptor-interacting protein complex 36 kDa component; DRIP36;)
genome : 48,651,278 - 48,669,214 (17,937)
query : 1 - 810 (810/810)
7 exons
identity = 0.998
3'(0.994;1.000;1.000;1.000;0.994;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR019258 : Mediator complex, subunit Med4
GO :
0001104 : Molecular Function : RNA polymerase II transcription cofactor activity
0006357 : Biological Process : regulation of transcription from RNA polymerase II promoter
0016592 : Cellular Component : mediator complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16, cyto 13.5, nucl 11.5, extr 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011307)
HIX0011307
HIT000515101 (
ENST00000417167
)
(Mediator of RNA polymerase II transcription subunit 4 isoform 2.)
genome : 48,651,307 - 48,669,204 (17,898)
query : 1 - 911 (911/911)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 25, nucl 2, mito 2, cysk 2, mito_nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011307)
HIX0172165
HIT000536089 (
ENST00000438155
)
(RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4 family protein.)
genome : 48,708,494 - 48,708,670 (177)
query : 1 - 177 (177/177)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, mito 3, nucl 2, cyto 2, cyto_nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0172165)
HIX0011308
HIT000427469
(
AK308603
)
(Hypothetical short protein.)
genome : 48,806,347 - 48,807,580 (1,234)
query : 1 - 1,166 (1,166/1,166)
2 exons
identity = 0.993
5'(0.998;0.980)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, mito 10, nucl 4, cyto 4, cyto_pero 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011308)
HIX0011308
HIT000208540 (
NM_021999
)
(Integral membrane protein 2B; Immature BRI2; imBRI2; Protein E25B; Transmembrane protein BRI; Bri; Contains: BRI2, membrane form; Mature BRI2; mBRI2; Contains: BRI2 intracellular domain; BRI2 ICD; Contains: BRI2C, soluble form; Contains: Bri23 peptide; Bri2-23; ABri23; C-terminal peptide; P23 peptide;)
genome : 48,807,274 - 48,836,232 (28,959)
query : 1 - 1,896 (1,896/1,896)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 27, mito 2, pero 2, mito_pero 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011308)
HIX0011308
HIT000071093
(
AF136973
)
Representative transcript
(Integral membrane protein 2B; Immature BRI2; imBRI2; Protein E25B; Transmembrane protein BRI; Bri; Contains: BRI2, membrane form; Mature BRI2; mBRI2; Contains: BRI2 intracellular domain; BRI2 ICD; Contains: BRI2C, soluble form; Contains: Bri23 peptide; Bri2-23; ABri23; C-terminal peptide; P23 peptide;)
genome : 48,807,306 - 48,836,226 (28,921)
query : 25 - 1,882 (1,858/1,896)
6 exons
identity = 0.996
5'(0.990;1.000;1.000;1.000;1.000;0.996)3'
coverage = 0.987
InterPro :
IPR007084 : BRICHOS domain
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 27, mito 2, pero 2, mito_pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011308)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB083306
Gallus
sp. (Chicken) : AF017985
Mus
sp. (Mouse) : AK151714
Danio
sp. (Zebrafish) : BC044480
Danio
sp. (Zebrafish) : BC053278
Rattus
sp. (Rat) : BC083735
Bos
sp. (Cow) : BC102307
Tetraodon
sp. (Tetraodon) : CR678287
Pongo
sp. (Orangutan) : CR859878
Oryzias
sp. (Medaka) : ENSORLT00000010357
Oryzias
sp. (Medaka) : ENSORLT00000020813
Pan
sp. (Chimpanzee) : ENSPTRT00000010775
Takifugu
sp. (Fugu) : SINFRUT00000177353
Monodelphis
sp. (Opossum) : XM_001368796
Equus
sp. (Horse) : XM_001489841
Canis
sp. (Dog) : XM_534119
HIX0011308
HIT000001838
(
AF092128
)
(Integral membrane protein 2B; Immature BRI2; imBRI2; Protein E25B; Transmembrane protein BRI; Bri; Contains: BRI2, membrane form; Mature BRI2; mBRI2; Contains: BRI2 intracellular domain; BRI2 ICD; Contains: BRI2C, soluble form; Contains: Bri23 peptide; Bri2-23; ABri23; C-terminal peptide; P23 peptide;)
genome : 48,807,306 - 48,835,521 (28,216)
query : 25 - 1,174 (1,150/1,198)
6 exons
identity = 0.997
5'(0.990;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.980
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 27, mito 2, pero 2, mito_pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011308)
HIX0011308
HIT000359845 (
ENST00000378565
)
(Integral membrane protein 2B; Immature BRI2; imBRI2; Protein E25B; Transmembrane protein BRI; Bri; Contains: BRI2, membrane form; Mature BRI2; mBRI2; Contains: BRI2 intracellular domain; BRI2 ICD; Contains: BRI2C, soluble form; Contains: Bri23 peptide; Bri2-23; ABri23; C-terminal peptide; P23 peptide;)
genome : 48,807,294 - 48,836,232 (28,939)
query : 1 - 1,876 (1,876/1,876)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 27, mito 2, pero 2, mito_pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011308)
HIX0011308
HIT000089551
(
BC018053
)
(Integral membrane protein 2B; Immature BRI2; imBRI2; Protein E25B; Transmembrane protein BRI; Bri; Contains: BRI2, membrane form; Mature BRI2; mBRI2; Contains: BRI2 intracellular domain; BRI2 ICD; Contains: BRI2C, soluble form; Contains: Bri23 peptide; Bri2-23; ABri23; C-terminal peptide; P23 peptide;)
genome : 48,807,294 - 48,836,011 (28,718)
query : 1 - 1,655 (1,655/1,669)
6 exons
identity = 0.999
5'(1.000;1.000;1.000;0.991;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR007084 : BRICHOS domain
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 27, mito 2, pero 2, mito_pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011308)
HIX0011308
HIT000071774
(
AF152462
)
(Integral membrane protein 2B; Immature BRI2; imBRI2; Protein E25B; Transmembrane protein BRI; Bri; Contains: BRI2, membrane form; Mature BRI2; mBRI2; Contains: BRI2 intracellular domain; BRI2 ICD; Contains: BRI2C, soluble form; Contains: Bri23 peptide; Bri2-23; ABri23; C-terminal peptide; P23 peptide;)
genome : 48,807,326 - 48,836,232 (28,907)
query : 1 - 1,843 (1,843/1,843)
6 exons
identity = 0.999
5'(0.997;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR007084 : BRICHOS domain
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 27, mito 2, pero 2, mito_pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011308)
HIX0011308
HIT000074932
(
AF246221
)
(Integral membrane protein 2B; Immature BRI2; imBRI2; Protein E25B; Transmembrane protein BRI; Bri; Contains: BRI2, membrane form; Mature BRI2; mBRI2; Contains: BRI2 intracellular domain; BRI2 ICD; Contains: BRI2C, soluble form; Contains: Bri23 peptide; Bri2-23; ABri23; C-terminal peptide; P23 peptide;)
genome : 48,807,326 - 48,836,232 (28,907)
query : 1 - 1,853 (1,853/1,853)
6 exons
identity = 0.994
5'(0.997;1.000;1.000;1.000;1.000;0.990)3'
coverage = 1.000
InterPro :
IPR007084 : BRICHOS domain
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 27, mito 2, pero 2, mito_pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011308)
HIX0011308
HIT000037482
(
BC016148
)
(Integral membrane protein 2B; Immature BRI2; imBRI2; Protein E25B; Transmembrane protein BRI; Bri; Contains: BRI2, membrane form; Mature BRI2; mBRI2; Contains: BRI2 intracellular domain; BRI2 ICD; Contains: BRI2C, soluble form; Contains: Bri23 peptide; Bri2-23; ABri23; C-terminal peptide; P23 peptide;)
genome : 48,807,327 - 48,836,005 (28,679)
query : 1 - 1,616 (1,616/1,640)
6 exons
identity = 0.999
5'(0.997;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR007084 : BRICHOS domain
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 28, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011308)
HIX0011308
HIT000049319
(
AK130048
)
(Integral membrane protein 2B; Immature BRI2; imBRI2; Protein E25B; Transmembrane protein BRI; Bri; Contains: BRI2, membrane form; Mature BRI2; mBRI2; Contains: BRI2 intracellular domain; BRI2 ICD; Contains: BRI2C, soluble form; Contains: Bri23 peptide; Bri2-23; ABri23; C-terminal peptide; P23 peptide;)
genome : 48,807,342 - 48,836,225 (28,884)
query : 5 - 1,825 (1,821/1,825)
6 exons
identity = 0.999
5'(0.996;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.998
InterPro :
IPR007084 : BRICHOS domain
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 27, mito 2, pero 2, mito_pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011308)
HIX0011308
HIT000359829 (
ENST00000378549
)
(Integral membrane protein 2B; Immature BRI2; imBRI2; Protein E25B; Transmembrane protein BRI; Bri; Contains: BRI2, membrane form; Mature BRI2; mBRI2; Contains: BRI2 intracellular domain; BRI2 ICD; Contains: BRI2C, soluble form; Contains: Bri23 peptide; Bri2-23; ABri23; C-terminal peptide; P23 peptide;)
genome : 48,807,339 - 48,835,524 (28,186)
query : 1 - 805 (805/805)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 26, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011308)
HIX0011308
HIT000002978
(
AK000503
)
(Integral membrane protein 2B; Immature BRI2; imBRI2; Protein E25B; Transmembrane protein BRI; Bri; Contains: BRI2, membrane form; Mature BRI2; mBRI2; Contains: BRI2 intracellular domain; BRI2 ICD; Contains: BRI2C, soluble form; Contains: Bri23 peptide; Bri2-23; ABri23; C-terminal peptide; P23 peptide;)
genome : 48,807,342 - 48,836,011 (28,670)
query : 1 - 1,607 (1,607/1,623)
6 exons
identity = 0.999
5'(1.000;0.992;1.000;1.000;0.993;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 27, mito 2, pero 2, mito_pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011308)
HIX0011308
HIT000010683
(
AK027411
)
(Integral membrane protein 2B; Immature BRI2; imBRI2; Protein E25B; Transmembrane protein BRI; Bri; Contains: BRI2, membrane form; Mature BRI2; mBRI2; Contains: BRI2 intracellular domain; BRI2 ICD; Contains: BRI2C, soluble form; Contains: Bri23 peptide; Bri2-23; ABri23; C-terminal peptide; P23 peptide;)
genome : 48,807,342 - 48,836,004 (28,663)
query : 1 - 1,599 (1,599/1,599)
6 exons
identity = 0.999
5'(1.000;1.000;0.995;1.000;1.000;0.999)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 26, extr 2, mito 2, pero 2, mito_pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011308)
HIX0011308
HIT000029730
(
BC000554
)
(Integral membrane protein 2B; Immature BRI2; imBRI2; Protein E25B; Transmembrane protein BRI; Bri; Contains: BRI2, membrane form; Mature BRI2; mBRI2; Contains: BRI2 intracellular domain; BRI2 ICD; Contains: BRI2C, soluble form; Contains: Bri23 peptide; Bri2-23; ABri23; C-terminal peptide; P23 peptide;)
genome : 48,807,348 - 48,835,521 (28,174)
query : 1 - 1,111 (1,111/1,128)
6 exons
identity = 0.999
5'(1.000;0.992;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR007084 : BRICHOS domain
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 27, mito 2, pero 2, mito_pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011308)
HIX0011308
HIT000242594
(
AF086918
)
(Integral membrane protein 2B; Immature BRI2; imBRI2; Protein E25B; Transmembrane protein BRI; Bri; Contains: BRI2, membrane form; Mature BRI2; mBRI2; Contains: BRI2 intracellular domain; BRI2 ICD; Contains: BRI2C, soluble form; Contains: Bri23 peptide; Bri2-23; ABri23; C-terminal peptide; P23 peptide;)
genome : 48,807,381 - 48,836,181 (28,801)
query : 1 - 1,743 (1,743/1,752)
6 exons
identity = 0.991
5'(0.974;0.984;1.000;1.000;1.000;0.992)3'
coverage = 1.000
InterPro :
IPR007084 : BRICHOS domain
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 26, extr 2, mito 2, pero 2, mito_pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011308)
HIX0011308
HIT000099783
(
BT006863
)
(Integral membrane protein 2B; Immature BRI2; imBRI2; Protein E25B; Transmembrane protein BRI; Bri; Contains: BRI2, membrane form; Mature BRI2; mBRI2; Contains: BRI2 intracellular domain; BRI2 ICD; Contains: BRI2C, soluble form; Contains: Bri23 peptide; Bri2-23; ABri23; C-terminal peptide; P23 peptide;)
genome : 48,807,497 - 48,835,358 (27,862)
query : 1 - 799 (799/801)
6 exons
identity = 0.999
5'(0.991;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.998
InterPro :
IPR007084 : BRICHOS domain
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 28, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011308)
HIX0011308
HIT000054442
(
BX537657
)
(Integral membrane protein 2B; Immature BRI2; imBRI2; Protein E25B; Transmembrane protein BRI; Bri; Contains: BRI2, membrane form; Mature BRI2; mBRI2; Contains: BRI2 intracellular domain; BRI2 ICD; Contains: BRI2C, soluble form; Contains: Bri23 peptide; Bri2-23; ABri23; C-terminal peptide; P23 peptide;)
genome : 48,831,177 - 48,835,521 (4,345)
query : 1 - 4,344 (4,344/4,362)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
InterPro :
IPR007084 : BRICHOS domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, cyto 5.5, cyto_mito 5.5, mito 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011308)
HIX0011308
HIT000568616 (
ENST00000463839
)
(Non-protein coding transcript.)
genome : 48,835,273 - 48,837,063 (1,791)
query : 1 - 542 (542/542)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011308)
HIX0037511
HIT000095814
(
BC039553
)
Representative transcript
(Hypothetical short protein.)
genome : 48,870,650 - 48,877,797 (7,148)
query : 17 - 1,159 (1,143/1,208)
3 exons
identity = 0.997
3'(0.995;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, nucl 6, cyto 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037511)
HIX0037511
HIT000726700 (
NR_046414
)
(Hypothetical short protein.)
genome : 48,870,650 - 48,877,797 (7,148)
query : 1 - 1,142 (1,142/1,191)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, nucl 6, cyto 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037511)
HIX0037511
HIT000531414 (
ENST00000433480
)
(Hypothetical short protein.)
genome : 48,870,649 - 48,877,797 (7,149)
query : 1 - 1,143 (1,143/1,143)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, nucl 6, cyto 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037511)
HIX0037511
HIT000534897 (
ENST00000436963
)
(Non-protein coding transcript.)
genome : 48,876,583 - 48,877,795 (1,213)
query : 1 - 220 (220/220)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037511)
HIX0026565
HIT000424055
(
AK291258
)
(Retinoblastoma-associated protein; p105-Rb; pRb; Rb; pp110;)
genome : 48,877,862 - 49,054,710 (176,849)
query : 1 - 3,477 (3,477/3,477)
27 exons
identity = 0.999
5'(1.000;1.000;0.991;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.993;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR002719 : Retinoblastoma-associated protein, B-box
IPR002720 : Retinoblastoma-associated protein, A-box
IPR013763 : Cyclin-like
IPR015030 : Retinoblastoma-associated protein, C-terminal
IPR024599 : Retinoblastoma-associated protein, N-terminal
IPR028309 : Retinoblastoma protein family
GO :
0005634 : Cellular Component : nucleus
0006357 : Biological Process : regulation of transcription from RNA polymerase II promoter
0051726 : Biological Process : regulation of cell cycle
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18.5, cyto_nucl 12, mito 8, cyto 4.5,
mito_pero 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026565)
HIX0026565
HIT000197366 (
NM_000321
)
(Retinoblastoma-associated protein; p105-Rb; pRb; Rb; pp110;)
genome : 48,877,883 - 49,056,026 (178,144)
query : 1 - 4,772 (4,772/4,772)
27 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18.5, cyto_nucl 12, mito 8, cyto 4.5,
mito_pero 4.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026565)
HIX0026565
HIT000494908
(
AK300284
)
(Retinoblastoma-associated protein; p105-Rb; pRb; Rb; pp110;)
genome : 48,877,883 - 49,054,467 (176,585)
query : 1 - 3,150 (3,150/3,150)
28 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.987;1.000;1.000;1.000;0.986;
1.000;1.000;1.000;1.000;0.993;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR002719 : Retinoblastoma-associated protein, B-box
IPR002720 : Retinoblastoma-associated protein, A-box
IPR013763 : Cyclin-like
IPR015030 : Retinoblastoma-associated protein, C-terminal
IPR024599 : Retinoblastoma-associated protein, N-terminal
IPR028309 : Retinoblastoma protein family
GO :
0005634 : Cellular Component : nucleus
0006357 : Biological Process : regulation of transcription from RNA polymerase II promoter
0051726 : Biological Process : regulation of cell cycle
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 14, cyto_nucl 12.3333, nucl 9.5, cyto_mito 8.5,
cyto_plas 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026565)
HIX0026565
HIT000052423
(
BC040540
)
(Retinoblastoma-associated protein; p105-Rb; pRb; Rb; pp110;)
genome : 48,877,888 - 49,056,023 (178,136)
query : 2 - 4,765 (4,764/4,782)
27 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.999
InterPro :
IPR002719 : Retinoblastoma-associated protein, B-box
IPR002720 : Retinoblastoma-associated protein, A-box
IPR013763 : Cyclin-like
IPR015030 : Retinoblastoma-associated protein, C-terminal
IPR024599 : Retinoblastoma-associated protein, N-terminal
IPR028309 : Retinoblastoma protein family
GO :
0005634 : Cellular Component : nucleus
0006357 : Biological Process : regulation of transcription from RNA polymerase II promoter
0051726 : Biological Process : regulation of cell cycle
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18.5, cyto_nucl 12, mito 8, cyto 4.5,
mito_pero 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026565)
HIX0026565
HIT000493803
(
AK299179
)
(Retinoblastoma-associated protein; p104; pRb; Rb;)
genome : 48,877,887 - 49,054,358 (176,472)
query : 1 - 3,015 (3,015/3,015)
27 exons
identity = 0.996
5'(0.995;0.939;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.993;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR002719 : Retinoblastoma-associated protein, B-box
IPR002720 : Retinoblastoma-associated protein, A-box
IPR013763 : Cyclin-like
IPR015030 : Retinoblastoma-associated protein, C-terminal
IPR024599 : Retinoblastoma-associated protein, N-terminal
IPR028309 : Retinoblastoma protein family
GO :
0005634 : Cellular Component : nucleus
0006357 : Biological Process : regulation of transcription from RNA polymerase II promoter
0051726 : Biological Process : regulation of cell cycle
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, cyto 5, cysk 3, cyto_plas 3, cyto_golg 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026565)
HIX0026565
HIT000426596
(
AK307730
)
(Retinoblastoma-associated protein; p105-Rb; pRb; Rb; pp110;)
genome : 48,877,887 - 49,037,939 (160,053)
query : 1 - 2,333 (2,333/2,333)
21 exons
identity = 0.995
5'(0.970;1.000;1.000;1.000;1.000;0.985;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.993;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR002719 : Retinoblastoma-associated protein, B-box
IPR002720 : Retinoblastoma-associated protein, A-box
IPR013763 : Cyclin-like
IPR024599 : Retinoblastoma-associated protein, N-terminal
IPR028309 : Retinoblastoma protein family
GO :
0005634 : Cellular Component : nucleus
0006357 : Biological Process : regulation of transcription from RNA polymerase II promoter
0051726 : Biological Process : regulation of cell cycle
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 14, cyto 6.5, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026565)
HIX0026565
HIT000624282 (
ENST00000525036
)
(Retinoblastoma-associated protein; p105-Rb; pRb; Rb; pp110;)
genome : 48,877,887 - 48,934,873 (56,987)
query : 1 - 1,490 (1,490/1,490)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18, cyto 12
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026565)
HIX0026565
HIT000052125
(
BC039060
)
(Retinoblastoma-associated protein; p105-Rb; pRb; Rb; pp110;)
genome : 48,877,897 - 49,056,022 (178,126)
query : 1 - 4,755 (4,755/4,781)
27 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR002719 : Retinoblastoma-associated protein, B-box
IPR002720 : Retinoblastoma-associated protein, A-box
IPR013763 : Cyclin-like
IPR015030 : Retinoblastoma-associated protein, C-terminal
IPR024599 : Retinoblastoma-associated protein, N-terminal
IPR028309 : Retinoblastoma protein family
GO :
0005634 : Cellular Component : nucleus
0006357 : Biological Process : regulation of transcription from RNA polymerase II promoter
0051726 : Biological Process : regulation of cell cycle
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18.5, cyto_nucl 12, mito 8, cyto 4.5,
mito_pero 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026565)
HIX0026565
HIT000194394
(
M15400
)
(Retinoblastoma-associated protein; p104; pRb; Rb;)
genome : 48,877,911 - 49,056,022 (178,112)
query : 2 - 4,740 (4,739/4,740)
27 exons
identity = 0.998
5'(0.996;1.000;0.966;1.000;1.000;1.000;1.000;
1.000;1.000;0.982;0.987;0.989;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR002719 : Retinoblastoma-associated protein, B-box
IPR002720 : Retinoblastoma-associated protein, A-box
IPR013763 : Cyclin-like
IPR015030 : Retinoblastoma-associated protein, C-terminal
IPR024599 : Retinoblastoma-associated protein, N-terminal
IPR028309 : Retinoblastoma protein family
GO :
0005634 : Cellular Component : nucleus
0006357 : Biological Process : regulation of transcription from RNA polymerase II promoter
0051726 : Biological Process : regulation of cell cycle
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18.5, cyto_nucl 12, mito 8, cyto 4.5,
mito_pero 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026565)
HIX0026565
HIT000195238
(
M28419
)
(Retinoblastoma-associated protein; p105-Rb; pRb; Rb; pp110;)
genome : 48,877,911 - 49,054,276 (176,366)
query : 2 - 2,994 (2,993/2,994)
27 exons
identity = 1.000
5'(0.996;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR002719 : Retinoblastoma-associated protein, B-box
IPR002720 : Retinoblastoma-associated protein, A-box
IPR013763 : Cyclin-like
IPR015030 : Retinoblastoma-associated protein, C-terminal
IPR024599 : Retinoblastoma-associated protein, N-terminal
IPR028309 : Retinoblastoma protein family
GO :
0005634 : Cellular Component : nucleus
0006357 : Biological Process : regulation of transcription from RNA polymerase II promoter
0051726 : Biological Process : regulation of cell cycle
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18.5, cyto_nucl 12, mito 8, cyto 4.5,
mito_pero 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026565)
HIX0026565
HIT000194695
(
M19701
)
(Retinoblastoma protein family protein.)
genome : 48,877,911 - 48,937,044 (59,134)
query : 2 - 480 (479/480)
3 exons
identity = 0.998
5'(0.996;1.000;1.000)3'
coverage = 0.998
InterPro :
IPR028309 : Retinoblastoma protein family
GO :
0006357 : Biological Process : regulation of transcription from RNA polymerase II promoter
0051726 : Biological Process : regulation of cell cycle
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 19, cyto_mito 14, mito_pero 10.3333, cyto 7.5,
cyto_nucl 7.33333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026565)
HIX0026565
HIT000110120 (
ENST00000267163
)
(Retinoblastoma-associated protein; p105-Rb; pRb; Rb; pp110;)
genome : 48,877,911 - 49,056,122 (178,212)
query : 1 - 4,840 (4,840/4,840)
27 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18.5, cyto_nucl 12, mito 8, cyto 4.5,
mito_pero 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026565)
HIX0026565
HIT000193791
(
L41870
)
Representative transcript
(Retinoblastoma-associated protein; p105-Rb; pRb; Rb; pp110;)
genome : 48,877,911 - 49,056,122 (178,212)
query : 1 - 4,839 (4,839/4,839)
27 exons
identity = 1.000
5'(0.996;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR002719 : Retinoblastoma-associated protein, B-box
IPR002720 : Retinoblastoma-associated protein, A-box
IPR013763 : Cyclin-like
IPR015030 : Retinoblastoma-associated protein, C-terminal
IPR024599 : Retinoblastoma-associated protein, N-terminal
IPR028309 : Retinoblastoma protein family
GO :
0005634 : Cellular Component : nucleus
0006357 : Biological Process : regulation of transcription from RNA polymerase II promoter
0051726 : Biological Process : regulation of cell cycle
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18.5, cyto_nucl 12, mito 8, cyto 4.5,
mito_pero 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026565)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB170534
Canis
sp. (Dog) : AF230742
Oryzias
sp. (Medaka) : AY008289
Mus
sp. (Mouse) : BC096525
Bos
sp. (Cow) : BC123388
Rattus
sp. (Rat) : D25233
Danio
sp. (Zebrafish) : ENSDART00000024309
Monodelphis
sp. (Opossum) : ENSMODT00000014231
Pongo
sp. (Orangutan) : ENSPPYT00000006341
Tetraodon
sp. (Tetraodon) : GSTENT00022163001
Takifugu
sp. (Fugu) : SINFRUT00000172384
Gallus
sp. (Chicken) : U00113
Equus
sp. (Horse) : XM_001490561
Pan
sp. (Chimpanzee) : XM_509777
HIX0026565
HIT000572112 (
ENST00000467505
)
(Retinoblastoma-associated protein; p105-Rb; pRb; Rb; pp110;)
genome : 48,877,911 - 48,937,044 (59,134)
query : 1 - 480 (480/480)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 19, cyto_mito 14, mito_pero 10.3333, cyto 7.5,
cyto_nucl 7.33333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026565)
HIX0026565
HIT000328723
(
AB208788
)
(Retinoblastoma-associated protein; p105-Rb; pRb; Rb; pp110;)
genome : 48,877,952 - 49,054,641 (176,690)
query : 1 - 3,318 (3,318/3,318)
27 exons
identity = 1.000
5'(1.000;0.992;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR002719 : Retinoblastoma-associated protein, B-box
IPR002720 : Retinoblastoma-associated protein, A-box
IPR013763 : Cyclin-like
IPR015030 : Retinoblastoma-associated protein, C-terminal
IPR024599 : Retinoblastoma-associated protein, N-terminal
IPR028309 : Retinoblastoma protein family
GO :
0005634 : Cellular Component : nucleus
0006357 : Biological Process : regulation of transcription from RNA polymerase II promoter
0051726 : Biological Process : regulation of cell cycle
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 19.5, nucl 19, cyto 12
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026565)
HIX0026565
HIT000195522
(
M33647
)
(Retinoblastoma-associated protein; p105-Rb; pRb; Rb; pp110;)
genome : 48,878,046 - 49,056,016 (177,971)
query : 1 - 4,599 (4,599/4,600)
27 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR002719 : Retinoblastoma-associated protein, B-box
IPR002720 : Retinoblastoma-associated protein, A-box
IPR013763 : Cyclin-like
IPR015030 : Retinoblastoma-associated protein, C-terminal
IPR024599 : Retinoblastoma-associated protein, N-terminal
IPR028309 : Retinoblastoma protein family
GO :
0005634 : Cellular Component : nucleus
0006357 : Biological Process : regulation of transcription from RNA polymerase II promoter
0051726 : Biological Process : regulation of cell cycle
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18.5, cyto_nucl 12, mito 8, cyto 4.5,
mito_pero 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026565)
HIX0211176
HIT000578708 (
ENST00000474415
)
(Conserved hypothetical protein.)
genome : 48,890,999 - 48,894,611 (3,613)
query : 1 - 3,613 (3,613/3,613)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14, cyto_nucl 8.16667, nucl 7.5, cyto 5.5,
cyto_pero 5.5, pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0211176)
HIX0211176
HIT000711298 (
ENST00000599544
)
(Protein phosphatase 1 regulatory subunit 26 family protein.)
genome : 48,894,299 - 48,894,610 (312)
query : 1 - 312 (312/312)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 12, cyto_nucl 8.66667, cyto 8, nucl 7,
cyto_pero 5.66667
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0211176)
HIX0192554
HIT000550180 (
ENST00000452246
)
(PEST proteolytic signal-containing nuclear protein family protein.)
genome : 48,902,220 - 48,902,700 (481)
query : 1 - 481 (481/481)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0192554)
HIX0026565
HIT000254656
(
AY429568
)
(Retinoblastoma-associated protein; p105-Rb; pRb; Rb; pp110;)
genome : 48,934,233 - 48,951,158 (16,926)
query : 1 - 490 (490/490)
6 exons
identity = 0.992
5'(1.000;1.000;0.982;0.987;0.989;1.000)3'
coverage = 1.000
InterPro :
IPR002720 : Retinoblastoma-associated protein, A-box
IPR013763 : Cyclin-like
IPR028309 : Retinoblastoma protein family
GO :
0005634 : Cellular Component : nucleus
0006357 : Biological Process : regulation of transcription from RNA polymerase II promoter
0051726 : Biological Process : regulation of cell cycle
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 10, extr 9, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026565)
HIX0026540
HIT000095641
(
BC039373
)
(Conserved hypothetical protein.)
genome : 48,963,707 - 49,018,803 (55,097)
query : 1 - 1,647 (1,647/1,662)
11 exons
identity = 0.997
3'(0.992;1.000;1.000;0.993;1.000;0.994;1.000;
1.000;1.000;0.995;1.000)5'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11, cyto_nucl 10.5, extr 9, cyto 6, mito 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026540)
HIX0026540
HIT000575387 (
ENST00000470937
)
(Hypothetical short protein.)
genome : 48,963,707 - 48,989,952 (26,246)
query : 1 - 442 (442/442)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
This sequence is too short.
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026540)
HIX0026540
HIT000567602 (
ENST00000462781
)
(Conserved hypothetical protein.)
genome : 48,963,707 - 48,989,949 (26,243)
query : 1 - 356 (356/356)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
This sequence is too short.
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026540)
HIX0026540
HIT000585794 (
ENST00000481832
)
(Hypothetical short protein.)
genome : 48,963,707 - 48,980,845 (17,139)
query : 1 - 479 (479/479)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
This sequence is too short.
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026540)
HIX0026540
HIT000569232 (
ENST00000464486
)
(Hypothetical short protein.)
genome : 48,963,707 - 48,965,667 (1,961)
query : 1 - 374 (374/374)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, nucl 11, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026540)
HIX0026540
HIT000055756
(
BX647109
)
(Lysophosphatidic acid receptor 6; LPA receptor 6; LPA-6; Oleoyl-L-alpha-lysophosphatidic acid receptor; P2Y purinoceptor 5; P2Y5; Purinergic receptor 5; RB intron encoded G-protein coupled receptor;)
genome : 48,985,183 - 48,987,249 (2,067)
query : 1 - 2,067 (2,067/2,127)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026540)
HIX0026540
HIT000317017 (
NM_005767
)
(Lysophosphatidic acid receptor 6; LPA receptor 6; LPA-6; Oleoyl-L-alpha-lysophosphatidic acid receptor; P2Y purinoceptor 5; P2Y5; Purinergic receptor 5; RB intron encoded G-protein coupled receptor;)
genome : 48,985,183 - 49,018,840 (33,658)
query : 1 - 3,002 (3,002/3,043)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026540)
HIX0026540
HIT000562054 (
NM_001162497
)
(Lysophosphatidic acid receptor 6; LPA receptor 6; LPA-6; Oleoyl-L-alpha-lysophosphatidic acid receptor; P2Y purinoceptor 5; P2Y5; Purinergic receptor 5; RB intron encoded G-protein coupled receptor;)
genome : 48,985,183 - 49,001,043 (15,861)
query : 1 - 2,520 (2,520/2,561)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026540)
HIX0026540
HIT000562055 (
NM_001162498
)
(Lysophosphatidic acid receptor 6; LPA receptor 6; LPA-6; Oleoyl-L-alpha-lysophosphatidic acid receptor; P2Y purinoceptor 5; P2Y5; Purinergic receptor 5; RB intron encoded G-protein coupled receptor;)
genome : 48,985,183 - 48,987,653 (2,471)
query : 1 - 2,471 (2,471/2,512)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026540)
HIX0026540
HIT000359714 (
ENST00000378434
)
(Lysophosphatidic acid receptor 6; LPA receptor 6; LPA-6; Oleoyl-L-alpha-lysophosphatidic acid receptor; P2Y purinoceptor 5; P2Y5; Purinergic receptor 5; RB intron encoded G-protein coupled receptor;)
genome : 48,985,181 - 49,018,840 (33,660)
query : 1 - 3,004 (3,004/3,004)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026540)
HIX0026540
HIT000042932
(
AK123059
)
(Lysophosphatidic acid receptor 6; LPA receptor 6; LPA-6; Oleoyl-L-alpha-lysophosphatidic acid receptor; P2Y purinoceptor 5; P2Y5; Purinergic receptor 5; RB intron encoded G-protein coupled receptor;)
genome : 48,985,184 - 48,987,249 (2,066)
query : 1 - 2,065 (2,065/2,065)
1 exon
identity = 0.998
3'(0.998)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026540)
HIX0026540
HIT000054207
(
BX537392
)
(Lysophosphatidic acid receptor 6; LPA receptor 6; LPA-6; Oleoyl-L-alpha-lysophosphatidic acid receptor; P2Y purinoceptor 5; P2Y5; Purinergic receptor 5; RB intron encoded G-protein coupled receptor;)
genome : 48,985,274 - 48,987,249 (1,976)
query : 1 - 1,976 (1,976/2,044)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026540)
HIX0026540
HIT000264253
(
BC070295
)
(Lysophosphatidic acid receptor 6; LPA receptor 6; LPA-6; Oleoyl-L-alpha-lysophosphatidic acid receptor; P2Y purinoceptor 5; P2Y5; Purinergic receptor 5; RB intron encoded G-protein coupled receptor;)
genome : 48,985,274 - 48,987,065 (1,792)
query : 1 - 1,792 (1,792/1,821)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026540)
HIX0026540
HIT000096392
(
BC040850
)
(Lysophosphatidic acid receptor 6; LPA receptor 6; LPA-6; Oleoyl-L-alpha-lysophosphatidic acid receptor; P2Y purinoceptor 5; P2Y5; Purinergic receptor 5; RB intron encoded G-protein coupled receptor;)
genome : 48,985,274 - 48,987,236 (1,963)
query : 1 - 1,963 (1,963/1,990)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026540)
HIX0026540
HIT000098096
(
BC045651
)
Representative transcript
(Lysophosphatidic acid receptor 6; LPA receptor 6; LPA-6; Oleoyl-L-alpha-lysophosphatidic acid receptor; P2Y purinoceptor 5; P2Y5; Purinergic receptor 5; RB intron encoded G-protein coupled receptor;)
genome : 48,985,274 - 49,018,840 (33,567)
query : 2 - 2,912 (2,911/2,938)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026540)
Ortholog candidate ( ->
Evola
)
Rattus
sp. (Rat) : BC098703
Danio
sp. (Zebrafish) : BC124734
Bos
sp. (Cow) : BC146191
Equus
sp. (Horse) : ENSECAT00000004839
Monodelphis
sp. (Opossum) : ENSMODT00000014241
Oryzias
sp. (Medaka) : ENSORLT00000003759
Pongo
sp. (Orangutan) : ENSPPYT00000006344
Tetraodon
sp. (Tetraodon) : GSTENT00035226001
Gallus
sp. (Chicken) : L06109
Takifugu
sp. (Fugu) : SINFRUT00000151063
Pan
sp. (Chimpanzee) : XM_001151666
HIX0026540
HIT000054260
(
BX537445
)
(Lysophosphatidic acid receptor 6; LPA receptor 6; LPA-6; Oleoyl-L-alpha-lysophosphatidic acid receptor; P2Y purinoceptor 5; P2Y5; Purinergic receptor 5; RB intron encoded G-protein coupled receptor;)
genome : 48,985,274 - 48,987,248 (1,975)
query : 2 - 1,976 (1,975/1,994)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 0.999
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026540)
HIX0026540
HIT000054253
(
BX537438
)
(Lysophosphatidic acid receptor 6; LPA receptor 6; LPA-6; Oleoyl-L-alpha-lysophosphatidic acid receptor; P2Y purinoceptor 5; P2Y5; Purinergic receptor 5; RB intron encoded G-protein coupled receptor;)
genome : 48,985,274 - 48,987,249 (1,976)
query : 1 - 1,976 (1,976/1,993)
1 exon
identity = 0.998
3'(0.998)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026540)
HIX0026540
HIT000331169
(
AK223389
)
(Lysophosphatidic acid receptor 6; LPA receptor 6; LPA-6; Oleoyl-L-alpha-lysophosphatidic acid receptor; P2Y purinoceptor 5; P2Y5; Purinergic receptor 5; RB intron encoded G-protein coupled receptor;)
genome : 48,985,274 - 48,987,018 (1,745)
query : 1 - 1,745 (1,745/1,762)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026540)
HIX0026540
HIT000042729
(
AK122856
)
(Lysophosphatidic acid receptor 6; LPA receptor 6; LPA-6; Oleoyl-L-alpha-lysophosphatidic acid receptor; P2Y purinoceptor 5; P2Y5; Purinergic receptor 5; RB intron encoded G-protein coupled receptor;)
genome : 48,985,275 - 49,001,043 (15,769)
query : 1 - 2,428 (2,428/2,428)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026540)
HIX0026540
HIT000307227 (
ENST00000345941
)
(Lysophosphatidic acid receptor 6; LPA receptor 6; LPA-6; Oleoyl-L-alpha-lysophosphatidic acid receptor; P2Y purinoceptor 5; P2Y5; Purinergic receptor 5; RB intron encoded G-protein coupled receptor;)
genome : 48,985,275 - 49,001,043 (15,769)
query : 1 - 2,428 (2,428/2,428)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026540)
HIX0026540
HIT000338499
(
BC106756
)
(Lysophosphatidic acid receptor 6; LPA receptor 6; LPA-6; Oleoyl-L-alpha-lysophosphatidic acid receptor; P2Y purinoceptor 5; P2Y5; Purinergic receptor 5; RB intron encoded G-protein coupled receptor;)
genome : 48,985,297 - 48,986,768 (1,472)
query : 1 - 1,472 (1,472/1,472)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026540)
HIX0026540
HIT000061582
(
AF000546
)
(Lysophosphatidic acid receptor 6; LPA receptor 6; LPA-6; Oleoyl-L-alpha-lysophosphatidic acid receptor; P2Y purinoceptor 5; P2Y5; Purinergic receptor 5; RB intron encoded G-protein coupled receptor;)
genome : 48,985,486 - 48,986,603 (1,118)
query : 1 - 1,118 (1,118/1,118)
1 exon
identity = 0.998
3'(0.998)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026540)
HIX0026540
HIT000397409
(
L78805
)
(Lysophosphatidic acid receptor 6; LPA receptor 6; LPA-6; Oleoyl-L-alpha-lysophosphatidic acid receptor; P2Y purinoceptor 5; P2Y5; Purinergic receptor 5; RB intron encoded G-protein coupled receptor;)
genome : 48,985,525 - 48,986,559 (1,035)
query : 1 - 1,035 (1,035/1,035)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026540)
HIX0026540
HIT000653753
(
HQ995530
)
(Lysophosphatidic acid receptor 6; LPA receptor 6; LPA-6; Oleoyl-L-alpha-lysophosphatidic acid receptor; P2Y purinoceptor 5; P2Y5; Purinergic receptor 5; RB intron encoded G-protein coupled receptor;)
genome : 48,985,525 - 48,986,559 (1,035)
query : 1 - 1,035 (1,035/1,035)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026540)
HIX0026540
HIT000715539
(
JF810890
)
(Lysophosphatidic acid receptor 6; LPA receptor 6; LPA-6; Oleoyl-L-alpha-lysophosphatidic acid receptor; P2Y purinoceptor 5; P2Y5; Purinergic receptor 5; RB intron encoded G-protein coupled receptor;)
genome : 48,985,525 - 48,986,559 (1,035)
query : 1 - 1,035 (1,035/1,035)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026540)
HIX0026540
HIT000259438
(
BC054346
)
(Lysophosphatidic acid receptor 6; LPA receptor 6; LPA-6; Oleoyl-L-alpha-lysophosphatidic acid receptor; P2Y purinoceptor 5; P2Y5; Purinergic receptor 5; RB intron encoded G-protein coupled receptor;)
genome : 48,985,854 - 48,987,096 (1,243)
query : 1 - 1,243 (1,243/1,257)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026540)
HIX0026540
HIT000585975 (
ENST00000482024
)
(Lysophosphatidic acid receptor 6; LPA receptor 6; LPA-6; Oleoyl-L-alpha-lysophosphatidic acid receptor; P2Y purinoceptor 5; P2Y5; Purinergic receptor 5; RB intron encoded G-protein coupled receptor;)
genome : 48,985,877 - 48,986,625 (749)
query : 1 - 534 (534/534)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 21, pero 6, extr 2, cyto 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026540)
HIX0026540
HIT000570067 (
ENST00000465365
)
(Conserved hypothetical protein.)
genome : 48,996,783 - 49,018,802 (22,020)
query : 1 - 805 (805/805)
5 exons
identity = 0.999
3'(0.993;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026540)
HIX0026540
HIT000022714
(
AK097860
)
(Conserved hypothetical protein.)
genome : 49,000,942 - 49,003,725 (2,784)
query : 1 - 2,678 (2,678/2,678)
2 exons
identity = 0.996
3'(0.997;0.996)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, cyto_nucl 13, extr 12, nucl 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026540)
HIX0026565
HIT000584509 (
ENST00000480491
)
(Retinoblastoma-associated protein; pRb; Rb; pp105;)
genome : 49,018,964 - 49,030,443 (11,480)
query : 1 - 617 (617/617)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026565)
HIX0026565
HIT000630307 (
ENST00000531171
)
(Retinoblastoma-associated protein; p105-Rb; pRb; Rb; pp110;)
genome : 49,050,536 - 49,054,475 (3,940)
query : 1 - 658 (658/658)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, cysk 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026565)
HIX0026565
HIT000588708 (
ENST00000484879
)
(Retinoblastoma-associated protein; p105-Rb; pRb; Rb; pp110;)
genome : 49,050,583 - 49,054,783 (4,201)
query : 1 - 1,097 (1,097/1,097)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, cysk 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026565)
HIX0026565
HIT000425991
(
AK307125
)
(Retinoblastoma-associated protein; p105-Rb; pRb; Rb; pp110;)
genome : 49,050,596 - 49,054,507 (3,912)
query : 1 - 808 (808/808)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR015030 : Retinoblastoma-associated protein, C-terminal
IPR028309 : Retinoblastoma protein family
GO :
0006357 : Biological Process : regulation of transcription from RNA polymerase II promoter
0051726 : Biological Process : regulation of cell cycle
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, cysk 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026565)
HIX0011310
HIT000198263 (
NM_001268
)
(RCC1 and BTB domain-containing protein 2; Chromosome condensation 1-like; CHC1-L; RCC1-like G exchanging factor; Regulator of chromosome condensation and BTB domain-containing protein 2;)
genome : 49,063,100 - 49,107,316 (44,217)
query : 1 - 3,174 (3,174/3,204)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23.5, cyto_nucl 13.5, cyto 2.5, plas 2, pero 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011310)
HIX0011310
HIT000040670
(
BC029052
)
Representative transcript
(RCC1 and BTB domain-containing protein 2; Chromosome condensation 1-like; CHC1-L; RCC1-like G exchanging factor; Regulator of chromosome condensation and BTB domain-containing protein 2;)
genome : 49,063,100 - 49,107,196 (44,097)
query : 1 - 3,054 (3,054/3,084)
15 exons
identity = 1.000
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR000210 : BTB/POZ-like
IPR000408 : Regulator of chromosome condensation, RCC1
IPR009091 : Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
IPR011333 : BTB/POZ fold
IPR013069 : BTB/POZ
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23.5, cyto_nucl 13.5, cyto 2.5, plas 2, pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011310)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK147784
Rattus
sp. (Rat) : BC061766
Gallus
sp. (Chicken) : CR353643
Pongo
sp. (Orangutan) : CR858121
Monodelphis
sp. (Opossum) : ENSMODT00000014197
Oryzias
sp. (Medaka) : ENSORLT00000003752
Tetraodon
sp. (Tetraodon) : GSTENT00035227001
Takifugu
sp. (Fugu) : SINFRUT00000151066
Macaca
sp. (Macaque) : XM_001101399
Danio
sp. (Zebrafish) : XM_001334622
Equus
sp. (Horse) : XM_001489540
Canis
sp. (Dog) : XM_850807
Bos
sp. (Cow) : XM_864976
Pan
sp. (Chimpanzee) : XR_023958
HIX0011310
HIT000137162 (
ENST00000344532
)
(RCC1 and BTB domain-containing protein 2; Chromosome condensation 1-like; CHC1-L; RCC1-like G exchanging factor; Regulator of chromosome condensation and BTB domain-containing protein 2;)
genome : 49,063,095 - 49,107,369 (44,275)
query : 1 - 3,232 (3,232/3,232)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23.5, cyto_nucl 13.5, cyto 2.5, plas 2, pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011310)
HIX0011310
HIT000329478
(
AB209543
)
(RCC1 and BTB domain-containing protein 2; Chromosome condensation 1-like; CHC1-L; RCC1-like G exchanging factor; Regulator of chromosome condensation and BTB domain-containing protein 2;)
genome : 49,063,101 - 49,107,358 (44,258)
query : 1 - 2,955 (2,955/2,955)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.995)5'
coverage = 1.000
InterPro :
IPR000210 : BTB/POZ-like
IPR000408 : Regulator of chromosome condensation, RCC1
IPR009091 : Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
IPR011333 : BTB/POZ fold
IPR013069 : BTB/POZ
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto 2, mito 2, pero 2, cyto_mito 2,
mito_pero 2, cyto_pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011310)
HIX0011310
HIT000064890
(
AF060219
)
(RCC1 and BTB domain-containing protein 2; Chromosome condensation 1-like; CHC1-L; RCC1-like G exchanging factor; Regulator of chromosome condensation and BTB domain-containing protein 2;)
genome : 49,063,101 - 49,098,895 (35,795)
query : 9 - 3,030 (3,022/3,030)
14 exons
identity = 1.000
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.997
InterPro :
IPR000210 : BTB/POZ-like
IPR000408 : Regulator of chromosome condensation, RCC1
IPR009091 : Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
IPR011333 : BTB/POZ fold
IPR013069 : BTB/POZ
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23.5, cyto_nucl 13.5, cyto 2.5, plas 2, pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011310)
HIX0011310
HIT000006284
(
AK023010
)
(RCC1 and BTB domain-containing protein 2; Chromosome condensation 1-like; CHC1-L; RCC1-like G exchanging factor; Regulator of chromosome condensation and BTB domain-containing protein 2;)
genome : 49,063,101 - 49,098,865 (35,765)
query : 1 - 2,991 (2,991/2,991)
14 exons
identity = 0.998
3'(0.998;1.000;1.000;1.000;0.995;1.000;1.000;
1.000;1.000;1.000;0.994;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000210 : BTB/POZ-like
IPR000408 : Regulator of chromosome condensation, RCC1
IPR009091 : Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
IPR011333 : BTB/POZ fold
IPR013069 : BTB/POZ
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27.5, cyto_nucl 15.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011310)
HIX0011310
HIT000042651
(
AK122778
)
(RCC1 and BTB domain-containing protein 2; Chromosome condensation 1-like; CHC1-L; RCC1-like G exchanging factor; Regulator of chromosome condensation and BTB domain-containing protein 2;)
genome : 49,063,106 - 49,110,118 (47,013)
query : 1 - 2,898 (2,898/2,898)
11 exons
identity = 0.998
3'(0.999;1.000;1.000;1.000;0.983;0.982;1.000;
1.000;1.000;1.000;0.997)5'
coverage = 1.000
InterPro :
IPR000210 : BTB/POZ-like
IPR000408 : Regulator of chromosome condensation, RCC1
IPR009091 : Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
IPR011333 : BTB/POZ fold
IPR013069 : BTB/POZ
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, extr 6, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011310)
HIX0011310
HIT000496140
(
AK301516
)
(RCC1 and BTB domain-containing protein 2; Chromosome condensation 1-like; CHC1-L; RCC1-like G exchanging factor; Regulator of chromosome condensation and BTB domain-containing protein 2;)
genome : 49,063,709 - 49,107,216 (43,508)
query : 1 - 2,400 (2,400/2,400)
14 exons
identity = 1.000
3'(1.000;0.992;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000210 : BTB/POZ-like
IPR000408 : Regulator of chromosome condensation, RCC1
IPR009091 : Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
IPR011333 : BTB/POZ fold
IPR013069 : BTB/POZ
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, mito 6, pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011310)
HIX0011310
HIT000528739 (
ENST00000430805
)
(RCC1 and BTB domain-containing protein 2; Chromosome condensation 1-like; CHC1-L; RCC1-like G exchanging factor; Regulator of chromosome condensation and BTB domain-containing protein 2;)
genome : 49,063,709 - 49,107,216 (43,508)
query : 1 - 2,400 (2,400/2,400)
14 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, mito 6, pero 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011310)
HIX0011310
HIT000567526 (
ENST00000462703
)
(RCC1 and BTB domain-containing protein 2; Chromosome condensation 1-like; CHC1-L; RCC1-like G exchanging factor; Regulator of chromosome condensation and BTB domain-containing protein 2;)
genome : 49,064,033 - 49,066,709 (2,677)
query : 1 - 553 (553/553)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, cyto 8, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011310)
HIX0011310
HIT000499222
(
AK304598
)
(RCC1 and BTB domain-containing protein 2; Chromosome condensation 1-like; CHC1-L; RCC1-like G exchanging factor; Regulator of chromosome condensation and BTB domain-containing protein 2;)
genome : 49,064,236 - 49,107,216 (42,981)
query : 1 - 1,316 (1,316/1,316)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000408 : Regulator of chromosome condensation, RCC1
IPR009091 : Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
SOSUI :
SOLUBLE PROTEIN
PSORT :
plas 17, mito 9, extr 3, nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011310)
HIX0011310
HIT000643537 (
ENST00000544492
)
(RCC1 and BTB domain-containing protein 2; Chromosome condensation 1-like; CHC1-L; RCC1-like G exchanging factor; Regulator of chromosome condensation and BTB domain-containing protein 2;)
genome : 49,064,236 - 49,107,216 (42,981)
query : 1 - 1,316 (1,316/1,316)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
plas 17, mito 9, extr 3, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011310)
HIX0011310
HIT000434569
(
AK315703
)
(RCC1 and BTB domain-containing protein 2; Chromosome condensation 1-like; CHC1-L; RCC1-like G exchanging factor; Regulator of chromosome condensation and BTB domain-containing protein 2;)
genome : 49,064,247 - 49,107,312 (43,066)
query : 1 - 2,023 (2,023/2,023)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.993)5'
coverage = 1.000
InterPro :
IPR000210 : BTB/POZ-like
IPR000408 : Regulator of chromosome condensation, RCC1
IPR009091 : Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
IPR011333 : BTB/POZ fold
IPR013069 : BTB/POZ
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23.5, cyto_nucl 13.5, cyto 2.5, plas 2, pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011310)
HIX0011310
HIT000428947
(
AK310081
)
(RCC1 and BTB domain-containing protein 2; Chromosome condensation 1-like; CHC1-L; RCC1-like G exchanging factor; Regulator of chromosome condensation and BTB domain-containing protein 2;)
genome : 49,073,780 - 49,107,222 (33,443)
query : 1 - 1,543 (1,543/1,543)
11 exons
identity = 0.999
3'(1.000;1.000;1.000;0.994;1.000;1.000;0.994;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000210 : BTB/POZ-like
IPR011333 : BTB/POZ fold
IPR013069 : BTB/POZ
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto 11.5, cyto_nucl 11.3333, nucl 7,
cyto_pero 6.83333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011310)
HIX0011310
HIT000493062
(
AK298438
)
(RCC1 and BTB domain-containing protein 2; Chromosome condensation 1-like; CHC1-L; RCC1-like G exchanging factor; Regulator of chromosome condensation and BTB domain-containing protein 2;)
genome : 49,076,879 - 49,107,213 (30,335)
query : 1 - 1,062 (1,062/1,062)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR000408 : Regulator of chromosome condensation, RCC1
IPR009091 : Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27, cyto 2, pero 2, cyto_pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011310)
HIX0011310
HIT000643949 (
ENST00000544904
)
(RCC1 and BTB domain-containing protein 2; Chromosome condensation 1-like; CHC1-L; RCC1-like G exchanging factor; Regulator of chromosome condensation and BTB domain-containing protein 2;)
genome : 49,076,879 - 49,107,213 (30,335)
query : 1 - 1,062 (1,062/1,062)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27, cyto 2, pero 2, cyto_pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011310)
HIX0201989
HIT000045043
(
AK125170
)
Representative transcript
(Conserved hypothetical protein.)
genome : 49,079,202 - 49,082,893 (3,692)
query : 1 - 3,691 (3,691/3,691)
1 exon
identity = 0.998
3'(0.998)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, mito 3, cyto_nucl 2, lyso 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201989)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : ENSMMUT00000043309
Pan
sp. (Chimpanzee) : XM_001151849
HIX0201989
HIT000014645
(
AK058039
)
(Conserved hypothetical protein.)
genome : 49,079,202 - 49,081,073 (1,872)
query : 1 - 1,871 (1,871/1,871)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, mito 3, cyto_nucl 2, lyso 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201989)
HIX0011310
HIT000585127 (
ENST00000481144
)
(RCC1 and BTB domain-containing protein 2; Chromosome condensation 1-like; CHC1-L; RCC1-like G exchanging factor; Regulator of chromosome condensation and BTB domain-containing protein 2;)
genome : 49,086,268 - 49,107,316 (21,049)
query : 1 - 670 (670/670)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011310)
HIX0037482
HIT000092501
(
BC031965
)
Representative transcript
(Hypothetical short protein.)
genome : 49,106,976 - 49,107,896 (921)
query : 1 - 921 (921/936)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, cyto 2, mito 2, cyto_mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037482)
Ortholog candidate ( ->
Evola
)
Pan
sp. (Chimpanzee) : XM_001151786
HIX0172271
HIT000550222 (
ENST00000452288
)
(Non-protein coding transcript.)
genome : 49,144,775 - 49,147,453 (2,679)
query : 1 - 413 (413/413)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0172271)
HIX0172053
HIT000727327 (
NR_051983
)
(Hypothetical protein.)
genome : 49,151,110 - 49,155,037 (3,928)
query : 1 - 1,023 (1,023/1,023)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29, cyto 2.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0172053)
HIX0172053
HIT000523284 (
ENST00000425350
)
(Conserved hypothetical protein.)
genome : 49,151,110 - 49,152,224 (1,115)
query : 1 - 962 (962/962)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29, cyto 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0172053)
HIX0037294
HIT000424536
(
AK291739
)
Representative transcript
(Cysteinyl leukotriene receptor 2; CysLTR2; G-protein coupled receptor GPCR21; hGPCR21; G-protein coupled receptor HG57; HPN321;)
genome : 49,227,847 - 49,282,312 (54,466)
query : 1 - 1,908 (1,908/1,908)
5 exons
identity = 0.999
5'(0.997;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR004071 : Cysteinyl leukotriene receptor
IPR013311 : Cysteinyl leukotriene receptor 2
GO :
0004974 : Molecular Function : leukotriene receptor activity
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037294)
Ortholog candidate ( ->
Evola
)
Rattus
sp. (Rat) : AB052661
Mus
sp. (Mouse) : AF331658
Bos
sp. (Cow) : BC151559
Gallus
sp. (Chicken) : ENSGALT00000027463
Macaca
sp. (Macaque) : XM_001101583
Monodelphis
sp. (Opossum) : XM_001378763
Equus
sp. (Horse) : XM_001489513
Canis
sp. (Dog) : XM_542563
Danio
sp. (Zebrafish) : XM_686477
Pan
sp. (Chimpanzee) : XR_021227
HIX0037294
HIT000394943
(
EF141523
)
(Conserved hypothetical protein.)
genome : 49,227,865 - 49,280,997 (53,133)
query : 1 - 727 (727/727)
6 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;0.990;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, cyto_nucl 13.5, nucl 8, extr 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037294)
HIX0037294
HIT000394944
(
EF141524
)
(Conserved hypothetical protein.)
genome : 49,227,865 - 49,280,997 (53,133)
query : 1 - 704 (704/704)
6 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;0.990;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, cyto_nucl 13.5, nucl 8, extr 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037294)
HIX0037294
HIT000394950
(
EF141530
)
(Hypothetical short protein.)
genome : 49,227,865 - 49,280,997 (53,133)
query : 1 - 334 (334/334)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037294)
HIX0037294
HIT000394945
(
EF141525
)
(Conserved hypothetical protein.)
genome : 49,228,065 - 49,280,997 (52,933)
query : 1 - 325 (325/325)
4 exons
identity = 0.997
5'(1.000;1.000;0.990;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037294)
HIX0037294
HIT000394946
(
EF141526
)
(Conserved hypothetical protein.)
genome : 49,228,065 - 49,280,997 (52,933)
query : 1 - 302 (302/302)
4 exons
identity = 0.997
5'(1.000;1.000;0.990;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037294)
HIX0037294
HIT000394947
(
EF141527
)
(Conserved hypothetical protein.)
genome : 49,228,065 - 49,280,997 (52,933)
query : 1 - 398 (398/398)
5 exons
identity = 0.997
5'(1.000;1.000;1.000;0.990;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037294)
HIX0037294
HIT000394948
(
EF141528
)
(Conserved hypothetical protein.)
genome : 49,228,065 - 49,280,997 (52,933)
query : 1 - 375 (375/375)
5 exons
identity = 0.997
5'(1.000;1.000;1.000;0.990;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037294)
HIX0037294
HIT000394949
(
EF141529
)
(Conserved hypothetical protein.)
genome : 49,228,065 - 49,280,997 (52,933)
query : 1 - 235 (235/235)
3 exons
identity = 0.996
5'(1.000;0.990;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037294)
HIX0037294
HIT000257904
(
AY853711
)
(Cysteinyl leukotriene receptor 2; CysLTR2; G-protein coupled receptor GPCR21; hGPCR21; G-protein coupled receptor HG57; HPN321;)
genome : 49,228,096 - 49,282,037 (53,942)
query : 1 - 1,312 (1,312/1,312)
4 exons
identity = 0.997
5'(1.000;0.985;0.980;0.999)3'
coverage = 1.000
InterPro :
IPR004071 : Cysteinyl leukotriene receptor
IPR013311 : Cysteinyl leukotriene receptor 2
GO :
0004974 : Molecular Function : leukotriene receptor activity
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037294)
HIX0037294
HIT000383897
(
AF279611
)
(Cysteinyl leukotriene receptor 2; CysLTR2; G-protein coupled receptor GPCR21; hGPCR21; G-protein coupled receptor HG57; HPN321;)
genome : 49,280,512 - 49,283,361 (2,850)
query : 1 - 2,850 (2,850/2,850)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
InterPro :
IPR004071 : Cysteinyl leukotriene receptor
IPR013311 : Cysteinyl leukotriene receptor 2
GO :
0004974 : Molecular Function : leukotriene receptor activity
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037294)
HIX0037294
HIT000241970
(
AB041947
)
(Cysteinyl leukotriene receptor 2; CysLTR2; G-protein coupled receptor GPCR21; hGPCR21; G-protein coupled receptor HG57; HPN321;)
genome : 49,280,620 - 49,282,328 (1,709)
query : 1 - 1,709 (1,709/1,709)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
InterPro :
IPR004071 : Cysteinyl leukotriene receptor
IPR013311 : Cysteinyl leukotriene receptor 2
GO :
0004974 : Molecular Function : leukotriene receptor activity
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037294)
HIX0037294
HIT000059230
(
AB038269
)
(Cysteinyl leukotriene receptor 2; CysLTR2; G-protein coupled receptor GPCR21; hGPCR21; G-protein coupled receptor HG57; HPN321;)
genome : 49,280,691 - 49,283,498 (2,808)
query : 1 - 2,807 (2,807/2,807)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
InterPro :
IPR004071 : Cysteinyl leukotriene receptor
IPR013311 : Cysteinyl leukotriene receptor 2
GO :
0004974 : Molecular Function : leukotriene receptor activity
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037294)
HIX0037294
HIT000335732
(
BC096832
)
(Cysteinyl leukotriene receptor 2; CysLTR2; G-protein coupled receptor GPCR21; hGPCR21; G-protein coupled receptor HG57; HPN321;)
genome : 49,280,839 - 49,282,031 (1,193)
query : 2 - 1,194 (1,193/1,195)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 0.998
InterPro :
IPR004071 : Cysteinyl leukotriene receptor
IPR013311 : Cysteinyl leukotriene receptor 2
GO :
0004974 : Molecular Function : leukotriene receptor activity
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037294)
HIX0037294
HIT000263332
(
BC069160
)
(Cysteinyl leukotriene receptor 2; CysLTR2; G-protein coupled receptor GPCR21; hGPCR21; G-protein coupled receptor HG57; HPN321;)
genome : 49,280,951 - 49,283,498 (2,548)
query : 1 - 2,548 (2,548/2,549)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
InterPro :
IPR004071 : Cysteinyl leukotriene receptor
IPR013311 : Cysteinyl leukotriene receptor 2
GO :
0004974 : Molecular Function : leukotriene receptor activity
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037294)
HIX0037294
HIT000112163 (
ENST00000282018
)
(Cysteinyl leukotriene receptor 2; CysLTR2; G-protein coupled receptor GPCR21; hGPCR21; G-protein coupled receptor HG57; HPN321;)
genome : 49,280,951 - 49,283,498 (2,548)
query : 1 - 2,548 (2,548/2,548)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037294)
HIX0037294
HIT000207891 (
NM_020377
)
(Cysteinyl leukotriene receptor 2; CysLTR2; G-protein coupled receptor GPCR21; hGPCR21; G-protein coupled receptor HG57; HPN321;)
genome : 49,280,951 - 49,283,498 (2,548)
query : 1 - 2,548 (2,548/2,548)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037294)
HIX0037294
HIT000383570
(
AB083603
)
(Cysteinyl leukotriene receptor 2; CysLTR2; G-protein coupled receptor GPCR21; hGPCR21; G-protein coupled receptor HG57; HPN321;)
genome : 49,280,954 - 49,281,994 (1,041)
query : 1 - 1,041 (1,041/1,041)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
InterPro :
IPR004071 : Cysteinyl leukotriene receptor
IPR013311 : Cysteinyl leukotriene receptor 2
GO :
0004974 : Molecular Function : leukotriene receptor activity
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037294)
HIX0037294
HIT000383893
(
AF254664
)
(Cysteinyl leukotriene receptor 2; CysLTR2; G-protein coupled receptor GPCR21; hGPCR21; G-protein coupled receptor HG57; HPN321;)
genome : 49,280,954 - 49,281,994 (1,041)
query : 1 - 1,041 (1,041/1,041)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
InterPro :
IPR004071 : Cysteinyl leukotriene receptor
IPR013311 : Cysteinyl leukotriene receptor 2
GO :
0004974 : Molecular Function : leukotriene receptor activity
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037294)
HIX0037294
HIT000386054
(
AY389504
)
(Cysteinyl leukotriene receptor 2; CysLTR2; G-protein coupled receptor GPCR21; hGPCR21; G-protein coupled receptor HG57; HPN321;)
genome : 49,280,954 - 49,281,994 (1,041)
query : 1 - 1,041 (1,041/1,041)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
InterPro :
IPR004071 : Cysteinyl leukotriene receptor
IPR013311 : Cysteinyl leukotriene receptor 2
GO :
0004974 : Molecular Function : leukotriene receptor activity
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037294)
HIX0037294
HIT000383146
(
AB041644
)
(Cysteinyl leukotriene receptor 2; CysLTR2; G-protein coupled receptor GPCR21; hGPCR21; G-protein coupled receptor HG57; HPN321;)
genome : 49,281,002 - 49,281,994 (993)
query : 1 - 993 (993/993)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
InterPro :
IPR004071 : Cysteinyl leukotriene receptor
IPR013311 : Cysteinyl leukotriene receptor 2
GO :
0004974 : Molecular Function : leukotriene receptor activity
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037294)
HIX0172277
HIT000550967 (
ENST00000453033
)
(Proteasome activator pa28 family protein.)
genome : 49,345,264 - 49,345,963 (700)
query : 1 - 700 (700/700)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 22, mito 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0172277)
HIX0172277
HIT000517746 (
ENST00000419812
)
(Proteasome activator pa28 family protein.)
genome : 49,345,759 - 49,345,965 (207)
query : 1 - 207 (207/207)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, extr 7, nucl 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0172277)
HIX0011312
HIT000249402
(
AJ749706
)
Representative transcript
(Fibronectin type-III domain-containing protein 3A; Human gene expressed in odontoblasts;)
genome : 49,550,048 - 49,782,470 (232,423)
query : 3 - 4,843 (4,841/4,843)
26 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
InterPro :
IPR003961 : Fibronectin type III
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
E.R. 8.5, cyto 7, E.R._mito 6.5, plas 4, nucl 4,
mito 3.5, cyto_golg 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011312)
Ortholog candidate ( ->
Evola
)
Gallus
sp. (Chicken) : AJ720389
Pongo
sp. (Orangutan) : CR858607
Mus
sp. (Mouse) : DQ192036
Oryzias
sp. (Medaka) : ENSORLT00000003722
Tetraodon
sp. (Tetraodon) : GSTENT00035230001
Takifugu
sp. (Fugu) : SINFRUT00000151076
Rattus
sp. (Rat) : XM_001070746
Pan
sp. (Chimpanzee) : XM_001152733
Monodelphis
sp. (Opossum) : XM_001368698
Equus
sp. (Horse) : XM_001490325
Canis
sp. (Dog) : XM_534117
Bos
sp. (Cow) : XM_585676
Macaca
sp. (Macaque) : XR_012680
HIX0011312
HIT000397906 (
NM_001079673
)
(Fibronectin type-III domain-containing protein 3A; Human gene expressed in odontoblasts;)
genome : 49,550,048 - 49,783,915 (233,868)
query : 1 - 6,286 (6,286/6,303)
26 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
E.R. 8.5, cyto 7, E.R._mito 6.5, plas 4, nucl 4,
mito 3.5, cyto_golg 3.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011312)
HIX0011312
HIT000596101 (
ENST00000492622
)
(Fibronectin type-III domain-containing protein 3A; Human gene expressed in odontoblasts;)
genome : 49,550,048 - 49,783,915 (233,868)
query : 1 - 6,286 (6,286/6,286)
26 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
E.R. 8.5, cyto 7, E.R._mito 6.5, plas 4, nucl 4,
mito 3.5, cyto_golg 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011312)
HIX0011312
HIT000057353
(
BX648706
)
(Fibronectin type-III domain-containing protein 3A isoform 1.)
genome : 49,550,050 - 49,783,729 (233,680)
query : 1 - 5,948 (5,948/5,966)
26 exons
identity = 0.997
5'(0.996;1.000)3'
coverage = 1.000
InterPro :
IPR003961 : Fibronectin type III
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
E.R. 7.5, E.R._mito 6.33333, cyto 6,
mito_pero 4.83333, pero 4.5, plas 4, nucl 4, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011312)
HIX0011312
HIT000056788
(
BX648141
)
(Fibronectin type-III domain-containing protein 3A; Human gene expressed in odontoblasts;)
genome : 49,550,059 - 49,783,908 (233,850)
query : 2 - 6,270 (6,269/6,291)
26 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
InterPro :
IPR003961 : Fibronectin type III
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
E.R. 8.5, cyto 7, E.R._mito 6.5, plas 4, nucl 4,
mito 3.5, cyto_golg 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011312)
HIX0011312
HIT000012685
(
AK056071
)
(Fibronectin type-III domain-containing protein 3A isoform 1.)
genome : 49,550,064 - 49,720,983 (170,920)
query : 1 - 2,178 (2,178/2,178)
8 exons
identity = 0.999
5'(0.996;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 10, nucl 8, cysk 8, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011312)
HIX0011312
HIT000359663 (
ENST00000378383
)
(Fibronectin type-III domain-containing protein 3A isoform 1.)
genome : 49,550,205 - 49,720,983 (170,779)
query : 1 - 2,037 (2,037/2,037)
8 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 10, nucl 8, cysk 8, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011312)
HIX0011312
HIT000259187
(
BC051029
)
(Fibronectin type-III domain-containing protein 3A; Human gene expressed in odontoblasts;)
genome : 49,550,809 - 49,783,729 (232,921)
query : 1 - 6,068 (6,068/6,082)
26 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
InterPro :
IPR003961 : Fibronectin type III
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, nucl 11, golg 3, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011312)
HIX0011312
HIT000587938 (
ENST00000484074
)
(Fibronectin type-III domain-containing protein 3A; Human gene expressed in odontoblasts;)
genome : 49,550,809 - 49,783,743 (232,935)
query : 1 - 6,082 (6,082/6,082)
26 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, nucl 11, golg 3, mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011312)
HIX0011312
HIT000055288
(
BX640739
)
(Fibronectin type-III domain-containing protein 3A isoform 2.)
genome : 49,550,939 - 49,783,729 (232,791)
query : 2 - 6,003 (6,002/6,162)
26 exons
identity = 0.999
5'(1.000;1.000)3'
coverage = 1.000
InterPro :
IPR003961 : Fibronectin type III
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 12.5, nucl 7.5, plas 3, E.R. 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011312)
HIX0011312
HIT000130389 (
ENST00000337156
)
(Fibronectin type-III domain-containing protein 3A isoform 2.)
genome : 49,550,939 - 49,783,888 (232,950)
query : 1 - 6,161 (6,161/6,161)
26 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 12.5, nucl 7.5, plas 3, E.R. 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011312)
HIX0011312
HIT000502724
(
BC144301
)
(Fibronectin type-III domain-containing protein 3A; Human gene expressed in odontoblasts;)
genome : 49,551,020 - 49,782,517 (231,498)
query : 1 - 4,656 (4,656/4,656)
26 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
InterPro :
IPR003961 : Fibronectin type III
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
E.R. 8.5, cyto 7, E.R._mito 6.5, plas 4, nucl 4,
mito 3.5, cyto_golg 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011312)
HIX0011312
HIT000500627
(
BC136617
)
(Fibronectin type-III domain-containing protein 3A; Human gene expressed in odontoblasts;)
genome : 49,551,020 - 49,782,510 (231,491)
query : 1 - 4,650 (4,650/4,650)
26 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
InterPro :
IPR003961 : Fibronectin type III
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
E.R. 8.5, cyto 7, E.R._mito 6.5, plas 4, nucl 4,
mito 3.5, cyto_golg 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011312)
HIX0011312
HIT000640961 (
ENST00000541916
)
(Fibronectin type-III domain-containing protein 3A; Human gene expressed in odontoblasts;)
genome : 49,551,020 - 49,782,510 (231,491)
query : 1 - 4,649 (4,649/4,649)
26 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
E.R. 8.5, cyto 7, E.R._mito 6.5, plas 4, nucl 4,
mito 3.5, cyto_golg 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011312)
HIX0011312
HIT000390865
(
BC132812
)
(Fibronectin type-III domain-containing protein 3A; Human gene expressed in odontoblasts;)
genome : 49,551,021 - 49,782,512 (231,492)
query : 1 - 4,650 (4,650/4,650)
26 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
InterPro :
IPR003961 : Fibronectin type III
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
E.R. 8.5, cyto 7, E.R._mito 6.5, plas 4, nucl 4,
mito 3.5, cyto_golg 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011312)
HIX0011304
HIT000200644 (
NM_003850
)
(Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial; EC=6.2.1.5; ATP-specific succinyl-CoA synthetase subunit beta; Renal carcinoma antigen NY-REN-39; Succinyl-CoA synthetase beta-A chain; SCS-betaA; Precursor;)
genome : 48,516,791 - 48,575,462 (58,672)
query : 1 - 2,164 (2,164/2,182)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.2.1.5
KEGG pathway :
00020 : Citrate cycle (TCA cycle) (22)
00640 : Propanoate metabolism (45)
00660 : C5-Branched dibasic acid metabolism (18)
00720 : Carbon fixation pathways in prokaryotes (41)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
01120 : Microbial metabolism in diverse environments (468)
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 20.5, cyto_mito 11, pero 7
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011304)
HIX0011304
HIT000059161
(
AB035863
)
Representative transcript
(Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial; EC=6.2.1.5; ATP-specific succinyl-CoA synthetase subunit beta; Renal carcinoma antigen NY-REN-39; Succinyl-CoA synthetase beta-A chain; SCS-betaA; Precursor;)
genome : 48,516,791 - 48,575,462 (58,672)
query : 1 - 2,164 (2,164/2,178)
11 exons
identity = 1.000
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.2.1.5
KEGG pathway :
00020 : Citrate cycle (TCA cycle) (22)
00640 : Propanoate metabolism (45)
00660 : C5-Branched dibasic acid metabolism (18)
00720 : Carbon fixation pathways in prokaryotes (41)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
01120 : Microbial metabolism in diverse environments (468)
InterPro :
IPR005809 : Succinyl-CoA synthetase, beta subunit
IPR005811 : ATP-citrate lyase/succinyl-CoA ligase
IPR011761 : ATP-grasp fold
IPR013650 : ATP-grasp fold, succinyl-CoA synthetase-type
IPR013815 : ATP-grasp fold, subdomain 1
IPR013816 : ATP-grasp fold, subdomain 2
IPR016102 : Succinyl-CoA synthetase-like
IPR017866 : Succinyl-CoA synthetase, beta subunit, conserved site
GO :
0003824 : Molecular Function : catalytic activity
0005524 : Molecular Function : ATP binding
0008152 : Biological Process : metabolic process
0046872 : Molecular Function : metal ion binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 20.5, cyto_mito 11, pero 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011304)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB169727
Gallus
sp. (Chicken) : AJ851731
Mus
sp. (Mouse) : AK081965
Danio
sp. (Zebrafish) : BC059701
Bos
sp. (Cow) : BC118443
Pongo
sp. (Orangutan) : CR857260
Oryzias
sp. (Medaka) : ENSORLT00000017626
Takifugu
sp. (Fugu) : SINFRUT00000131566
Rattus
sp. (Rat) : XM_001071843
Pan
sp. (Chimpanzee) : XM_001150944
Monodelphis
sp. (Opossum) : XM_001378882
Equus
sp. (Horse) : XM_001489977
Canis
sp. (Dog) : XM_542566
HIX0011304
HIT000003932
(
AK001458
)
(Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial; EC=6.2.1.5; ATP-specific succinyl-CoA synthetase subunit beta; Renal carcinoma antigen NY-REN-39; Succinyl-CoA synthetase beta-A chain; SCS-betaA; Precursor;)
genome : 48,516,791 - 48,575,426 (58,636)
query : 1 - 2,062 (2,062/2,076)
11 exons
identity = 0.994
3'(0.999;1.000;1.000;0.993;1.000;1.000;0.992;
1.000;1.000;1.000;0.919)5'
coverage = 1.000
EC number :
EC 6.2.1.5
KEGG pathway :
00020 : Citrate cycle (TCA cycle) (22)
00640 : Propanoate metabolism (45)
00660 : C5-Branched dibasic acid metabolism (18)
00720 : Carbon fixation pathways in prokaryotes (41)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
01120 : Microbial metabolism in diverse environments (468)
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 22.5, cyto_mito 13.5, cyto 3.5, nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011304)
HIX0011304
HIT000040273
(
BC027587
)
(Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial; EC=6.2.1.5; ATP-specific succinyl-CoA synthetase subunit beta; Renal carcinoma antigen NY-REN-39; Succinyl-CoA synthetase beta-A chain; SCS-betaA; Precursor;)
genome : 48,516,791 - 48,575,414 (58,624)
query : 1 - 2,116 (2,116/2,130)
11 exons
identity = 1.000
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.2.1.5
KEGG pathway :
00020 : Citrate cycle (TCA cycle) (22)
00640 : Propanoate metabolism (45)
00660 : C5-Branched dibasic acid metabolism (18)
00720 : Carbon fixation pathways in prokaryotes (41)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
01120 : Microbial metabolism in diverse environments (468)
InterPro :
IPR005809 : Succinyl-CoA synthetase, beta subunit
IPR005811 : ATP-citrate lyase/succinyl-CoA ligase
IPR011761 : ATP-grasp fold
IPR013650 : ATP-grasp fold, succinyl-CoA synthetase-type
IPR013815 : ATP-grasp fold, subdomain 1
IPR013816 : ATP-grasp fold, subdomain 2
IPR016102 : Succinyl-CoA synthetase-like
IPR017866 : Succinyl-CoA synthetase, beta subunit, conserved site
GO :
0003824 : Molecular Function : catalytic activity
0005524 : Molecular Function : ATP binding
0008152 : Biological Process : metabolic process
0046872 : Molecular Function : metal ion binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 20.5, cyto_mito 11, pero 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011304)
HIX0011304
HIT000064814
(
AF058953
)
(Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial; EC=6.2.1.5; ATP-specific succinyl-CoA synthetase subunit beta; Renal carcinoma antigen NY-REN-39; Succinyl-CoA synthetase beta-A chain; SCS-betaA; Precursor;)
genome : 48,516,791 - 48,571,137 (54,347)
query : 1 - 1,996 (1,996/2,007)
10 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;0.992;
1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.2.1.5
KEGG pathway :
00020 : Citrate cycle (TCA cycle) (22)
00640 : Propanoate metabolism (45)
00660 : C5-Branched dibasic acid metabolism (18)
00720 : Carbon fixation pathways in prokaryotes (41)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
01120 : Microbial metabolism in diverse environments (468)
InterPro :
IPR005809 : Succinyl-CoA synthetase, beta subunit
IPR005811 : ATP-citrate lyase/succinyl-CoA ligase
IPR011761 : ATP-grasp fold
IPR013650 : ATP-grasp fold, succinyl-CoA synthetase-type
IPR013815 : ATP-grasp fold, subdomain 1
IPR013816 : ATP-grasp fold, subdomain 2
IPR016102 : Succinyl-CoA synthetase-like
IPR017866 : Succinyl-CoA synthetase, beta subunit, conserved site
GO :
0003824 : Molecular Function : catalytic activity
0005524 : Molecular Function : ATP binding
0008152 : Biological Process : metabolic process
0046872 : Molecular Function : metal ion binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 17, mito 10, plas 2, nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011304)
HIX0011304
HIT000055154
(
BX640602
)
(Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial; EC=6.2.1.5; ATP-specific succinyl-CoA synthetase subunit beta; Renal carcinoma antigen NY-REN-39; Succinyl-CoA synthetase beta-A chain; SCS-betaA; Precursor;)
genome : 48,516,791 - 48,575,432 (58,642)
query : 2 - 2,135 (2,134/2,145)
11 exons
identity = 0.999
3'(0.997;1.000;1.000;1.000;1.000;0.993;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.2.1.5
KEGG pathway :
00020 : Citrate cycle (TCA cycle) (22)
00640 : Propanoate metabolism (45)
00660 : C5-Branched dibasic acid metabolism (18)
00720 : Carbon fixation pathways in prokaryotes (41)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
01120 : Microbial metabolism in diverse environments (468)
InterPro :
IPR005809 : Succinyl-CoA synthetase, beta subunit
IPR005811 : ATP-citrate lyase/succinyl-CoA ligase
IPR011761 : ATP-grasp fold
IPR013650 : ATP-grasp fold, succinyl-CoA synthetase-type
IPR013815 : ATP-grasp fold, subdomain 1
IPR013816 : ATP-grasp fold, subdomain 2
IPR016102 : Succinyl-CoA synthetase-like
IPR017866 : Succinyl-CoA synthetase, beta subunit, conserved site
GO :
0003824 : Molecular Function : catalytic activity
0005524 : Molecular Function : ATP binding
0008152 : Biological Process : metabolic process
0046872 : Molecular Function : metal ion binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 20.5, cyto_mito 11, pero 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011304)
HIX0011304
HIT000359925 (
ENST00000378645
)
(Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial; EC=6.2.1.5; ATP-specific succinyl-CoA synthetase subunit beta; Renal carcinoma antigen NY-REN-39; Succinyl-CoA synthetase beta-A chain; SCS-betaA; Precursor;)
genome : 48,516,791 - 48,575,462 (58,672)
query : 1 - 2,098 (2,098/2,098)
11 exons
identity = 0.996
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.939)5'
coverage = 1.000
EC number :
EC 6.2.1.5
KEGG pathway :
00020 : Citrate cycle (TCA cycle) (22)
00640 : Propanoate metabolism (45)
00660 : C5-Branched dibasic acid metabolism (18)
00720 : Carbon fixation pathways in prokaryotes (41)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
01120 : Microbial metabolism in diverse environments (468)
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 22.5, cyto_mito 13.5, cyto 3.5, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011304)
HIX0011304
HIT000359934 (
ENST00000378654
)
(Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial; EC=6.2.1.5; ATP-specific succinyl-CoA synthetase subunit beta; Renal carcinoma antigen NY-REN-39; Succinyl-CoA synthetase beta-A chain; SCS-betaA; Precursor;)
genome : 48,516,791 - 48,575,462 (58,672)
query : 1 - 2,164 (2,164/2,164)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.2.1.5
KEGG pathway :
00020 : Citrate cycle (TCA cycle) (22)
00640 : Propanoate metabolism (45)
00660 : C5-Branched dibasic acid metabolism (18)
00720 : Carbon fixation pathways in prokaryotes (41)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
01120 : Microbial metabolism in diverse environments (468)
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 20.5, cyto_mito 11, pero 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011304)
HIX0011304
HIT000004321
(
AK001847
)
(Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial; EC=6.2.1.5; ATP-specific succinyl-CoA synthetase subunit beta; Renal carcinoma antigen NY-REN-39; Succinyl-CoA synthetase beta-A chain; SCS-betaA; Precursor;)
genome : 48,516,792 - 48,575,449 (58,658)
query : 1 - 2,150 (2,150/2,150)
11 exons
identity = 0.998
3'(0.997;1.000;1.000;1.000;1.000;1.000;0.984;
1.000;1.000;0.994;1.000)5'
coverage = 1.000
EC number :
EC 6.2.1.5
KEGG pathway :
00020 : Citrate cycle (TCA cycle) (22)
00640 : Propanoate metabolism (45)
00660 : C5-Branched dibasic acid metabolism (18)
00720 : Carbon fixation pathways in prokaryotes (41)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
01120 : Microbial metabolism in diverse environments (468)
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 21.5, cyto_mito 11.5, pero 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011304)
HIX0011304
HIT000242635
(
AF087890
)
(Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial; EC=6.2.1.5; ATP-specific succinyl-CoA synthetase subunit beta; Succinyl-CoA synthetase beta-A chain; SCS-betaA; Precursor; Fragment;)
genome : 48,517,084 - 48,575,462 (58,379)
query : 12 - 1,881 (1,870/1,881)
11 exons
identity = 0.990
3'(0.988;1.000;1.000;1.000;1.000;1.000;0.992;
1.000;1.000;1.000;0.919)5'
coverage = 0.994
EC number :
EC 6.2.1.5
KEGG pathway :
00020 : Citrate cycle (TCA cycle) (22)
00640 : Propanoate metabolism (45)
00660 : C5-Branched dibasic acid metabolism (18)
00720 : Carbon fixation pathways in prokaryotes (41)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
01120 : Microbial metabolism in diverse environments (468)
InterPro :
IPR005809 : Succinyl-CoA synthetase, beta subunit
IPR005811 : ATP-citrate lyase/succinyl-CoA ligase
IPR011761 : ATP-grasp fold
IPR013650 : ATP-grasp fold, succinyl-CoA synthetase-type
IPR013815 : ATP-grasp fold, subdomain 1
IPR013816 : ATP-grasp fold, subdomain 2
IPR016102 : Succinyl-CoA synthetase-like
IPR017866 : Succinyl-CoA synthetase, beta subunit, conserved site
GO :
0003824 : Molecular Function : catalytic activity
0005524 : Molecular Function : ATP binding
0008152 : Biological Process : metabolic process
0046872 : Molecular Function : metal ion binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 27.5, cyto_nucl 15
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011304)
HIX0011304
HIT000496935
(
AK302311
)
(Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial; EC=6.2.1.5; ATP-specific succinyl-CoA synthetase subunit beta; Renal carcinoma antigen NY-REN-39; Succinyl-CoA synthetase beta-A chain; SCS-betaA; Precursor;)
genome : 48,517,124 - 48,575,424 (58,301)
query : 1 - 1,890 (1,890/1,890)
12 exons
identity = 0.998
3'(0.998;1.000;1.000;1.000;1.000;1.000;0.992;
1.000;1.000;1.000;1.000;0.991)5'
coverage = 1.000
EC number :
EC 6.2.1.5
KEGG pathway :
00020 : Citrate cycle (TCA cycle) (22)
00640 : Propanoate metabolism (45)
00660 : C5-Branched dibasic acid metabolism (18)
00720 : Carbon fixation pathways in prokaryotes (41)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
01120 : Microbial metabolism in diverse environments (468)
InterPro :
IPR005809 : Succinyl-CoA synthetase, beta subunit
IPR005811 : ATP-citrate lyase/succinyl-CoA ligase
IPR013650 : ATP-grasp fold, succinyl-CoA synthetase-type
IPR013816 : ATP-grasp fold, subdomain 2
IPR016102 : Succinyl-CoA synthetase-like
IPR017866 : Succinyl-CoA synthetase, beta subunit, conserved site
GO :
0003824 : Molecular Function : catalytic activity
0005524 : Molecular Function : ATP binding
0008152 : Biological Process : metabolic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 26, mito 3.5, mito_pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011304)
HIX0011304
HIT000643145 (
ENST00000544100
)
(Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial; EC=6.2.1.5; ATP-specific succinyl-CoA synthetase subunit beta; Renal carcinoma antigen NY-REN-39; Succinyl-CoA synthetase beta-A chain; SCS-betaA; Precursor;)
genome : 48,517,124 - 48,575,424 (58,301)
query : 1 - 1,890 (1,890/1,890)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.2.1.5
KEGG pathway :
00020 : Citrate cycle (TCA cycle) (22)
00640 : Propanoate metabolism (45)
00660 : C5-Branched dibasic acid metabolism (18)
00720 : Carbon fixation pathways in prokaryotes (41)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
01120 : Microbial metabolism in diverse environments (468)
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 26, mito 3.5, mito_pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011304)
HIX0011304
HIT000384582
(
AK225452
)
(Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial; EC=6.2.1.5; ATP-specific succinyl-CoA synthetase subunit beta; Renal carcinoma antigen NY-REN-39; Succinyl-CoA synthetase beta-A chain; SCS-betaA; Precursor;)
genome : 48,517,189 - 48,575,449 (58,261)
query : 1 - 1,753 (1,753/1,753)
11 exons
identity = 0.997
3'(0.997;1.000;1.000;1.000;0.994;1.000;0.992;
1.000;0.990;0.994;0.993)5'
coverage = 1.000
EC number :
EC 6.2.1.5
KEGG pathway :
00020 : Citrate cycle (TCA cycle) (22)
00640 : Propanoate metabolism (45)
00660 : C5-Branched dibasic acid metabolism (18)
00720 : Carbon fixation pathways in prokaryotes (41)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
01120 : Microbial metabolism in diverse environments (468)
InterPro :
IPR005809 : Succinyl-CoA synthetase, beta subunit
IPR005811 : ATP-citrate lyase/succinyl-CoA ligase
IPR011761 : ATP-grasp fold
IPR013650 : ATP-grasp fold, succinyl-CoA synthetase-type
IPR013815 : ATP-grasp fold, subdomain 1
IPR013816 : ATP-grasp fold, subdomain 2
IPR016102 : Succinyl-CoA synthetase-like
IPR017866 : Succinyl-CoA synthetase, beta subunit, conserved site
GO :
0003824 : Molecular Function : catalytic activity
0005524 : Molecular Function : ATP binding
0008152 : Biological Process : metabolic process
0046872 : Molecular Function : metal ion binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 19.5, cyto_mito 10.5, pero 7, nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011304)
HIX0011304
HIT000494061
(
AK299437
)
(Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial; EC=6.2.1.5; ATP-specific succinyl-CoA synthetase subunit beta; Renal carcinoma antigen NY-REN-39; Succinyl-CoA synthetase beta-A chain; SCS-betaA; Precursor;)
genome : 48,517,423 - 48,575,110 (57,688)
query : 1 - 1,471 (1,471/1,471)
11 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;0.994;1.000;0.984;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.2.1.5
KEGG pathway :
00020 : Citrate cycle (TCA cycle) (22)
00640 : Propanoate metabolism (45)
00660 : C5-Branched dibasic acid metabolism (18)
00720 : Carbon fixation pathways in prokaryotes (41)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
01120 : Microbial metabolism in diverse environments (468)
InterPro :
IPR005809 : Succinyl-CoA synthetase, beta subunit
IPR005811 : ATP-citrate lyase/succinyl-CoA ligase
IPR011761 : ATP-grasp fold
IPR013650 : ATP-grasp fold, succinyl-CoA synthetase-type
IPR013815 : ATP-grasp fold, subdomain 1
IPR013816 : ATP-grasp fold, subdomain 2
IPR016102 : Succinyl-CoA synthetase-like
IPR017866 : Succinyl-CoA synthetase, beta subunit, conserved site
GO :
0003824 : Molecular Function : catalytic activity
0005524 : Molecular Function : ATP binding
0008152 : Biological Process : metabolic process
0046872 : Molecular Function : metal ion binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 27.5, cyto_nucl 15
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011304)
HIX0011304
HIT000633920 (
ENST00000534875
)
(Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial; EC=6.2.1.5; ATP-specific succinyl-CoA synthetase subunit beta; Renal carcinoma antigen NY-REN-39; Succinyl-CoA synthetase beta-A chain; SCS-betaA; Precursor;)
genome : 48,517,423 - 48,575,110 (57,688)
query : 1 - 1,471 (1,471/1,471)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.2.1.5
KEGG pathway :
00020 : Citrate cycle (TCA cycle) (22)
00640 : Propanoate metabolism (45)
00660 : C5-Branched dibasic acid metabolism (18)
00720 : Carbon fixation pathways in prokaryotes (41)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
01120 : Microbial metabolism in diverse environments (468)
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 27.5, cyto_nucl 15
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011304)
HIX0011304
HIT000499884
(
AK316271
)
(Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial; EC=6.2.1.5; ATP-specific succinyl-CoA synthetase subunit beta; Renal carcinoma antigen NY-REN-39; Succinyl-CoA synthetase beta-A chain; SCS-betaA; Precursor;)
genome : 48,517,469 - 48,612,125 (94,657)
query : 1 - 1,801 (1,801/1,801)
12 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;0.992;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.2.1.5
KEGG pathway :
00020 : Citrate cycle (TCA cycle) (22)
00640 : Propanoate metabolism (45)
00660 : C5-Branched dibasic acid metabolism (18)
00720 : Carbon fixation pathways in prokaryotes (41)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
01120 : Microbial metabolism in diverse environments (468)
InterPro :
IPR005809 : Succinyl-CoA synthetase, beta subunit
IPR005811 : ATP-citrate lyase/succinyl-CoA ligase
IPR011761 : ATP-grasp fold
IPR013650 : ATP-grasp fold, succinyl-CoA synthetase-type
IPR013815 : ATP-grasp fold, subdomain 1
IPR013816 : ATP-grasp fold, subdomain 2
IPR016102 : Succinyl-CoA synthetase-like
IPR017866 : Succinyl-CoA synthetase, beta subunit, conserved site
GO :
0003824 : Molecular Function : catalytic activity
0005524 : Molecular Function : ATP binding
0008152 : Biological Process : metabolic process
0046872 : Molecular Function : metal ion binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 27.5, cyto_nucl 15
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011304)
HIX0011304
HIT000642458 (
ENST00000543413
)
(Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial; EC=6.2.1.5; ATP-specific succinyl-CoA synthetase subunit beta; Renal carcinoma antigen NY-REN-39; Succinyl-CoA synthetase beta-A chain; SCS-betaA; Precursor;)
genome : 48,517,469 - 48,612,125 (94,657)
query : 1 - 1,801 (1,801/1,801)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.2.1.5
KEGG pathway :
00020 : Citrate cycle (TCA cycle) (22)
00640 : Propanoate metabolism (45)
00660 : C5-Branched dibasic acid metabolism (18)
00720 : Carbon fixation pathways in prokaryotes (41)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
01120 : Microbial metabolism in diverse environments (468)
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 27.5, cyto_nucl 15
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011304)
HIX0011304
HIT000499654
(
AK316041
)
(Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial; EC=6.2.1.5; ATP-specific succinyl-CoA synthetase subunit beta; Renal carcinoma antigen NY-REN-39; Succinyl-CoA synthetase beta-A chain; SCS-betaA; Precursor;)
genome : 48,517,488 - 48,575,429 (57,942)
query : 1 - 1,381 (1,381/1,381)
11 exons
identity = 0.990
3'(1.000;1.000;1.000;1.000;1.000;1.000;0.992;
0.891;1.000;0.994;1.000)5'
coverage = 1.000
EC number :
EC 6.2.1.5
KEGG pathway :
00020 : Citrate cycle (TCA cycle) (22)
00640 : Propanoate metabolism (45)
00660 : C5-Branched dibasic acid metabolism (18)
00720 : Carbon fixation pathways in prokaryotes (41)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
01120 : Microbial metabolism in diverse environments (468)
InterPro :
IPR005809 : Succinyl-CoA synthetase, beta subunit
IPR005811 : ATP-citrate lyase/succinyl-CoA ligase
IPR013650 : ATP-grasp fold, succinyl-CoA synthetase-type
IPR013816 : ATP-grasp fold, subdomain 2
IPR016102 : Succinyl-CoA synthetase-like
IPR017866 : Succinyl-CoA synthetase, beta subunit, conserved site
GO :
0003824 : Molecular Function : catalytic activity
0005524 : Molecular Function : ATP binding
0008152 : Biological Process : metabolic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 14, extr 5, mito 5, E.R._mito 5, pero 4, E.R. 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011304)
HIX0011304
HIT000434379
(
AK315513
)
(Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial; EC=6.2.1.5; ATP-specific succinyl-CoA synthetase subunit beta; Renal carcinoma antigen NY-REN-39; Succinyl-CoA synthetase beta-A chain; SCS-betaA; Precursor;)
genome : 48,517,506 - 48,575,424 (57,919)
query : 1 - 1,411 (1,411/1,411)
11 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;0.992;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.2.1.5
KEGG pathway :
00020 : Citrate cycle (TCA cycle) (22)
00640 : Propanoate metabolism (45)
00660 : C5-Branched dibasic acid metabolism (18)
00720 : Carbon fixation pathways in prokaryotes (41)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
01120 : Microbial metabolism in diverse environments (468)
InterPro :
IPR005809 : Succinyl-CoA synthetase, beta subunit
IPR005811 : ATP-citrate lyase/succinyl-CoA ligase
IPR011761 : ATP-grasp fold
IPR013650 : ATP-grasp fold, succinyl-CoA synthetase-type
IPR013815 : ATP-grasp fold, subdomain 1
IPR013816 : ATP-grasp fold, subdomain 2
IPR016102 : Succinyl-CoA synthetase-like
IPR017866 : Succinyl-CoA synthetase, beta subunit, conserved site
GO :
0003824 : Molecular Function : catalytic activity
0005524 : Molecular Function : ATP binding
0008152 : Biological Process : metabolic process
0046872 : Molecular Function : metal ion binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 21.5, cyto_mito 11.5, pero 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011304)
HIX0011304
HIT000532418 (
ENST00000434484
)
(Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial; EC=6.2.1.5; ATP-specific succinyl-CoA synthetase subunit beta; Renal carcinoma antigen NY-REN-39; Succinyl-CoA synthetase beta-A chain; SCS-betaA; Precursor;)
genome : 48,528,278 - 48,575,376 (47,099)
query : 1 - 894 (894/894)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.2.1.5
KEGG pathway :
00020 : Citrate cycle (TCA cycle) (22)
00640 : Propanoate metabolism (45)
00660 : C5-Branched dibasic acid metabolism (18)
00720 : Carbon fixation pathways in prokaryotes (41)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
01120 : Microbial metabolism in diverse environments (468)
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 13.5, nucl 6.5, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011304)
HIX0011304
HIT000530956 (
ENST00000433022
)
(Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial; EC=6.2.1.5; ATP-specific succinyl-CoA synthetase subunit beta; Renal carcinoma antigen NY-REN-39; Succinyl-CoA synthetase beta-A chain; SCS-betaA; Precursor;)
genome : 48,528,588 - 48,575,409 (46,822)
query : 1 - 467 (467/467)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.2.1.5
KEGG pathway :
00020 : Citrate cycle (TCA cycle) (22)
00640 : Propanoate metabolism (45)
00660 : C5-Branched dibasic acid metabolism (18)
00720 : Carbon fixation pathways in prokaryotes (41)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
01120 : Microbial metabolism in diverse environments (468)
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 16, cyto 12.5, cyto_nucl 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011304)
AL359180.17
48000001-48046441 F +
NCBI
AL590811.10
48046442-48085021 F +
NCBI
AL157765.6
48085022-48212675 F +
NCBI
AL138959.20
48212676-48381366 F +
NCBI
AL138962.16
48381367-48505784 F +
NCBI
AL157369.7
48505785-48589511 F +
NCBI
AL158196.24
48589512-48742005 F +
NCBI
AL139322.13
48742006-48862678 F +
NCBI
AL392048.9
48862679-48999920 F +
NCBI
AL136960.4
48999921-49062645 F +
NCBI
AL157813.11
49062646-49177064 F +
NCBI
AL137118.20
49177065-49339410 F +
NCBI
AL139182.24
49339411-49470517 F +
NCBI
AL603827.2
49470518-49476862 F +
NCBI
AL161421.11
49476863-49600000 F +
NCBI