bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0037488
HIT000093628
(
BC034981
)
Representative transcript
(Conserved hypothetical protein.)
genome : 76,506,531 - 76,509,268 (2,738)
query : 1 - 2,739 (2,739/2,754)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13.5, extr 13, cyto 10.5, nucl 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037488)
HIX0037488
HIT000678875 (
ENST00000565815
)
(Conserved hypothetical protein.)
genome : 76,506,531 - 76,509,268 (2,738)
query : 1 - 2,738 (2,738/2,738)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13.5, extr 13, cyto 10.5, nucl 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037488)
HIX0172246
HIT000546740 (
ENST00000448806
)
(Hypothetical short protein.)
genome : 76,587,159 - 76,588,637 (1,479)
query : 1 - 277 (277/277)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0172246)
HIX0011380
HIT000212400 (
NM_138444
)
(BTB/POZ domain-containing protein KCTD12; Pfetin; Predominantly fetal expressed T1 domain;)
genome : 77,454,304 - 77,460,540 (6,237)
query : 1 - 6,237 (6,237/6,255)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto_nucl 17, cyto 8
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011380)
HIX0011380
HIT000242918
(
AF359381
)
Representative transcript
(BTB/POZ domain-containing protein KCTD12; Pfetin; Predominantly fetal expressed T1 domain;)
genome : 77,454,312 - 77,460,525 (6,214)
query : 1 - 6,216 (6,216/6,216)
1 exon
identity = 0.995
3'(0.995)5'
coverage = 1.000
InterPro :
IPR000210 : BTB/POZ-like
IPR003131 : Potassium channel tetramerisation-type BTB domain
IPR011333 : BTB/POZ fold
GO :
0005515 : Molecular Function : protein binding
0051260 : Biological Process : protein homooligomerization
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto_nucl 17, cyto 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011380)
Ortholog candidate ( ->
Evola
)
Danio
sp. (Zebrafish) : AY120891
Gallus
sp. (Chicken) : BX930213
Oryzias
sp. (Medaka) : ENSORLT00000014228
Pongo
sp. (Orangutan) : ENSPPYT00000006421
Tetraodon
sp. (Tetraodon) : GSTENT00017062001
Takifugu
sp. (Fugu) : SINFRUT00000129882
Pan
sp. (Chimpanzee) : XM_001137708
Monodelphis
sp. (Opossum) : XM_001362427
Rattus
sp. (Rat) : XM_344450
Canis
sp. (Dog) : XM_542614
Bos
sp. (Cow) : XM_868438
HIX0011380
HIT000358754 (
ENST00000377474
)
(BTB/POZ domain-containing protein KCTD12; Pfetin; Predominantly fetal expressed T1 domain;)
genome : 77,454,312 - 77,460,525 (6,214)
query : 1 - 6,214 (6,214/6,214)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto_nucl 17, cyto 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011380)
HIX0011380
HIT000064364
(
AF052169
)
(Conserved hypothetical protein.)
genome : 77,455,987 - 77,457,373 (1,387)
query : 1 - 1,386 (1,386/1,404)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, cyto_nucl 8.5, nucl 6.5, cyto 5.5, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011380)
HIX0011380
HIT000048236
(
AK128363
)
(BTB/POZ domain-containing protein KCTD12; Pfetin; Predominantly fetal expressed T1 domain;)
genome : 77,455,988 - 77,460,540 (4,553)
query : 1 - 3,842 (3,842/3,842)
2 exons
identity = 0.997
3'(1.000;0.991)5'
coverage = 1.000
InterPro :
IPR000210 : BTB/POZ-like
IPR003131 : Potassium channel tetramerisation-type BTB domain
IPR011333 : BTB/POZ fold
GO :
0005515 : Molecular Function : protein binding
0051260 : Biological Process : protein homooligomerization
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto_nucl 17, cyto 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011380)
HIX0011380
HIT000121428 (
ENST00000317765
)
(BTB/POZ domain-containing protein KCTD12; Pfetin; Predominantly fetal expressed T1 domain;)
genome : 77,455,988 - 77,460,540 (4,553)
query : 1 - 3,839 (3,839/3,839)
2 exons
identity = 0.998
3'(1.000;0.994)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto_nucl 17, cyto 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011380)
HIX0011380
HIT000014247
(
AK057635
)
(Conserved hypothetical protein.)
genome : 77,455,988 - 77,458,189 (2,202)
query : 1 - 2,202 (2,202/2,202)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, cyto_nucl 8.5, nucl 6.5, cyto 5.5, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011380)
HIX0011380
HIT000036354
(
BC013764
)
(BTB/POZ domain-containing protein KCTD12; Pfetin; Predominantly fetal expressed T1 domain;)
genome : 77,457,304 - 77,460,370 (3,067)
query : 1 - 3,068 (3,068/3,086)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
InterPro :
IPR000210 : BTB/POZ-like
IPR003131 : Potassium channel tetramerisation-type BTB domain
IPR011333 : BTB/POZ fold
GO :
0005515 : Molecular Function : protein binding
0051260 : Biological Process : protein homooligomerization
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto_nucl 17, cyto 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011380)
HIX0171820
HIT000430134
(
AK311268
)
Representative transcript
(BTB/POZ domain-containing protein KCTD12.)
genome : 77,458,625 - 77,460,540 (1,916)
query : 1 - 1,011 (1,011/1,011)
2 exons
identity = 0.990
5'(0.999;0.868)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, nucl 10, cyto_nucl 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0171820)
HIX0171820
HIT000430409
(
AK311543
)
(BTB/POZ domain-containing protein KCTD12.)
genome : 77,458,893 - 77,460,540 (1,648)
query : 1 - 1,009 (1,009/1,009)
2 exons
identity = 0.989
5'(0.998;0.868)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto_nucl 11.5, extr 11
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0171820)
HIX0011380
HIT000563983
(
AB593182
)
(BTB/POZ domain-containing protein KCTD12.)
genome : 77,459,834 - 77,460,531 (698)
query : 1 - 698 (698/698)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
InterPro :
IPR000210 : BTB/POZ-like
IPR003131 : Potassium channel tetramerisation-type BTB domain
IPR011333 : BTB/POZ fold
GO :
0005515 : Molecular Function : protein binding
0051260 : Biological Process : protein homooligomerization
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 12.5, nucl 12, cyto 11, extr 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011380)
HIX0011380
HIT000691204 (
ENST00000579275
)
(Non-protein coding transcript.)
genome : 77,460,456 - 77,460,535 (80)
query : 1 - 80 (80/80)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011380)
HIX0202005
HIT000524516 (
ENST00000426582
)
(Nascent polypeptide-associated complex NAC domain containing protein.)
genome : 77,502,200 - 77,502,970 (771)
query : 1 - 477 (477/477)
2 exons
identity = 0.992
5'(0.980;0.995)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, cyto_nucl 12, extr 7, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202005)
HIX0202005
HIT000387348
(
BC115358
)
Representative transcript
(Transcription factor BTF3; RNA polymerase B transcription factor 3;)
genome : 77,502,200 - 77,502,835 (636)
query : 1 - 636 (636/636)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
InterPro :
IPR002715 : Nascent polypeptide-associated complex NAC domain
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 22, extr 6, cyto 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202005)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : XR_010240
Pan
sp. (Chimpanzee) : XR_019999
HIX0202005
HIT000338460
(
BC106717
)
(Transcription factor BTF3; RNA polymerase B transcription factor 3;)
genome : 77,502,200 - 77,502,827 (628)
query : 1 - 628 (628/628)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
InterPro :
IPR002715 : Nascent polypeptide-associated complex NAC domain
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 22, extr 6, cyto 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202005)
HIX0202005
HIT000338461
(
BC106718
)
(Transcription factor BTF3; RNA polymerase B transcription factor 3;)
genome : 77,502,200 - 77,502,827 (628)
query : 1 - 628 (628/628)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
InterPro :
IPR002715 : Nascent polypeptide-associated complex NAC domain
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 22, extr 6, cyto 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202005)
HIX0202005
HIT000563155 (
NR_026983
)
(Transcription factor BTF3; RNA polymerase B transcription factor 3;)
genome : 77,502,585 - 77,503,224 (640)
query : 1 - 640 (640/640)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21.5, cyto_nucl 15.1667, cyto_plas 12.5,
nucl 5.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202005)
HIX0202007
HIT000358742 (
ENST00000377462
)
(MmgE/PrpD family protein.)
genome : 77,522,632 - 77,532,777 (10,146)
query : 1 - 2,165 (2,165/2,165)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14, cyto_nucl 13.5, cyto 9, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202007)
HIX0202007
HIT000724275 (
NM_001258406
)
(MmgE/PrpD family protein.)
genome : 77,526,621 - 77,532,775 (6,155)
query : 10 - 2,101 (2,092/2,111)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 0.996
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14, cyto_nucl 13.5, cyto 9, extr 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202007)
HIX0202007
HIT000547687 (
ENST00000449753
)
(MmgE/PrpD family protein.)
genome : 77,526,612 - 77,532,120 (5,509)
query : 1 - 1,446 (1,446/1,446)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16, nucl 15.5, cyto 11.5, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202007)
HIX0192593
HIT000522761 (
ENST00000424827
)
(Ribosomal protein L30, ferredoxin-like fold domain containing protein.)
genome : 77,555,310 - 77,556,051 (742)
query : 1 - 742 (742/742)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, cyto_nucl 5, nucl 3, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0192593)
HIX0202030
HIT000534499 (
ENST00000436565
)
(Conserved hypothetical protein.)
genome : 77,559,003 - 77,562,078 (3,076)
query : 1 - 3,076 (3,076/3,076)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, nucl 3.5, cyto_nucl 3.5, cyto 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202030)
HIX0037301
HIT000065596
(
AF068227
)
Representative transcript
(Ceroid-lipofuscinosis neuronal protein 5; Protein CLN5; Precursor;)
genome : 77,564,809 - 77,576,652 (11,844)
query : 15 - 4,064 (4,050/4,080)
4 exons
identity = 1.000
5'(0.999;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR026138 : Ceroid-lipofuscinosis neuronal protein 5
GO :
0005764 : Cellular Component : lysosome
0022008 : Biological Process : neurogenesis
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 27, cyto 3.5, cyto_nucl 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037301)
Ortholog candidate ( ->
Evola
)
Canis
sp. (Dog) : AJ875417
Mus
sp. (Mouse) : AK085741
Tetraodon
sp. (Tetraodon) : CR734088
Bos
sp. (Cow) : DQ421787
Equus
sp. (Horse) : ENSECAT00000010662
Oryzias
sp. (Medaka) : ENSORLT00000014267
Pongo
sp. (Orangutan) : ENSPPYT00000006424
Monodelphis
sp. (Opossum) : XM_001367094
Rattus
sp. (Rat) : XM_224477
Gallus
sp. (Chicken) : XM_417005
Pan
sp. (Chimpanzee) : XM_509687
Danio
sp. (Zebrafish) : XM_692790
HIX0037301
HIT000358733 (
ENST00000377453
)
(Ceroid-lipofuscinosis neuronal protein 5; Protein CLN5; Precursor;)
genome : 77,564,809 - 77,576,652 (11,844)
query : 15 - 4,064 (4,050/4,064)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 27, cyto 3.5, cyto_nucl 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037301)
HIX0037301
HIT000203088 (
NM_006493
)
(Ceroid-lipofuscinosis neuronal protein 5; Protein CLN5; Precursor;)
genome : 77,566,059 - 77,576,652 (10,594)
query : 1 - 2,800 (2,800/2,816)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 27, cyto 3.5, cyto_nucl 2.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037301)
HIX0037301
HIT000082144
(
AK075109
)
(Ceroid-lipofuscinosis neuronal protein 5; Protein CLN5; Precursor;)
genome : 77,566,219 - 77,576,651 (10,433)
query : 1 - 2,120 (2,120/2,120)
5 exons
identity = 0.995
5'(0.995;0.994;1.000;0.999;0.971)3'
coverage = 1.000
InterPro :
IPR026138 : Ceroid-lipofuscinosis neuronal protein 5
GO :
0005764 : Cellular Component : lysosome
0022008 : Biological Process : neurogenesis
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 14, extr 3, nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037301)
HIX0037301
HIT000498625
(
AK304001
)
(Ceroid-lipofuscinosis neuronal protein 5; Protein CLN5; Precursor;)
genome : 77,566,219 - 77,575,504 (9,286)
query : 1 - 1,407 (1,407/1,407)
4 exons
identity = 0.996
5'(0.989;0.971;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR026138 : Ceroid-lipofuscinosis neuronal protein 5
GO :
0005764 : Cellular Component : lysosome
0022008 : Biological Process : neurogenesis
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21, extr 4, nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037301)
HIX0037301
HIT000589717 (
ENST00000485938
)
(Ceroid-lipofuscinosis neuronal protein 5; Protein CLN5; Precursor;)
genome : 77,566,251 - 77,570,419 (4,169)
query : 1 - 705 (705/705)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15.5, extr 12, cyto_mito 11.5, cyto 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037301)
HIX0011381
HIT000589586 (
ENST00000485797
)
(F-box/LRR-repeat protein 3; F-box and leucine-rich repeat protein 3A; F-box/LRR-repeat protein 3A;)
genome : 77,566,740 - 77,589,716 (22,977)
query : 1 - 520 (520/520)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011381)
HIX0011381
HIT000582104 (
ENST00000477982
)
(F-box/LRR-repeat protein 3; F-box and leucine-rich repeat protein 3A; F-box/LRR-repeat protein 3A;)
genome : 77,575,696 - 77,592,821 (17,126)
query : 1 - 748 (748/748)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, cyto 5, mito 3.5, cyto_nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011381)
HIX0011381
HIT000008758
(
AK025484
)
(F-box/LRR-repeat protein 3; F-box and leucine-rich repeat protein 3A; F-box/LRR-repeat protein 3A;)
genome : 77,579,395 - 77,592,774 (13,380)
query : 1 - 2,741 (2,741/2,831)
3 exons
identity = 0.996
3'(0.996;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, cyto 4, mito 2, cyto_plas 2, cyto_golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011381)
HIX0011381
HIT000028099
(
AL833187
)
(F-box/LRR-repeat protein 3; F-box and leucine-rich repeat protein 3A; F-box/LRR-repeat protein 3A;)
genome : 77,579,396 - 77,601,279 (21,884)
query : 1 - 3,490 (3,490/3,535)
5 exons
identity = 0.997
3'(0.996;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001810 : F-box domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 14, cyto 11.5, golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011381)
HIX0011381
HIT000203957 (
NM_012158
)
(F-box/LRR-repeat protein 3; F-box and leucine-rich repeat protein 3A; F-box/LRR-repeat protein 3A;)
genome : 77,579,389 - 77,601,331 (21,943)
query : 1 - 3,549 (3,549/3,572)
5 exons
identity = 0.997
3'(0.996;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 14, cyto 11.5, golg 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011381)
HIX0011381
HIT000264892
(
BC072448
)
Representative transcript
(F-box/LRR-repeat protein 3; F-box and leucine-rich repeat protein 3A; F-box/LRR-repeat protein 3A;)
genome : 77,579,389 - 77,601,285 (21,897)
query : 1 - 3,503 (3,503/3,526)
5 exons
identity = 0.997
3'(0.996;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001810 : F-box domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 14, cyto 11.5, golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011381)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK142007
Rattus
sp. (Rat) : BC092649
Bos
sp. (Cow) : BC126752
Danio
sp. (Zebrafish) : BC154277
Equus
sp. (Horse) : ENSECAT00000011469
Monodelphis
sp. (Opossum) : ENSMODT00000001408
Oryzias
sp. (Medaka) : ENSORLT00000014287
Pongo
sp. (Orangutan) : ENSPPYT00000006425
Pan
sp. (Chimpanzee) : ENSPTRT00000048141
Tetraodon
sp. (Tetraodon) : GSTENT00017012001
Takifugu
sp. (Fugu) : SINFRUT00000152439
Takifugu
sp. (Fugu) : SINFRUT00000162962
Macaca
sp. (Macaque) : XM_001087502
Canis
sp. (Dog) : XM_542618
HIX0011381
HIT000070528
(
AF126028
)
(F-box/LRR-repeat protein 3; F-box and leucine-rich repeat protein 3A; F-box/LRR-repeat protein 3A;)
genome : 77,579,396 - 77,595,970 (16,575)
query : 1 - 3,146 (3,146/3,167)
4 exons
identity = 0.995
3'(0.994;1.000;1.000;0.994)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15.5, cyto 14, nucl 13, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011381)
HIX0011381
HIT000261182
(
BC063796
)
(F-box/LRR-repeat protein 3; F-box and leucine-rich repeat protein 3A; F-box/LRR-repeat protein 3A;)
genome : 77,579,397 - 77,601,281 (21,885)
query : 1 - 3,421 (3,421/3,436)
6 exons
identity = 0.994
3'(0.995;1.000;1.000;1.000;1.000;0.938)5'
coverage = 1.000
InterPro :
IPR001810 : F-box domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 14, cyto 11.5, golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011381)
HIX0011381
HIT000309734 (
ENST00000355619
)
(F-box/LRR-repeat protein 3; F-box and leucine-rich repeat protein 3A; F-box/LRR-repeat protein 3A;)
genome : 77,579,389 - 77,601,285 (21,897)
query : 1 - 3,503 (3,503/3,503)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 14, cyto 11.5, golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011381)
HIX0011381
HIT000433308
(
AK314442
)
(F-box/LRR-repeat protein 3; F-box and leucine-rich repeat protein 3A; F-box/LRR-repeat protein 3A;)
genome : 77,581,280 - 77,601,298 (20,019)
query : 2 - 1,626 (1,625/1,626)
5 exons
identity = 0.999
3'(0.997;1.000;1.000;1.000;1.000)5'
coverage = 0.999
InterPro :
IPR001810 : F-box domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14.5, cyto_nucl 14, cyto 12.5, golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011381)
HIX0011381
HIT000070619
(
AF129532
)
(F-box/LRR-repeat protein 3; F-box and leucine-rich repeat protein 3A; F-box/LRR-repeat protein 3A;)
genome : 77,581,283 - 77,600,998 (19,716)
query : 1 - 1,322 (1,322/1,322)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001810 : F-box domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 14, cyto 11.5, golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011381)
HIX0011381
HIT000515257 (
ENST00000417323
)
(F-box/LRR-repeat protein 3; F-box and leucine-rich repeat protein 3A; F-box/LRR-repeat protein 3A;)
genome : 77,581,700 - 77,601,330 (19,631)
query : 1 - 1,093 (1,093/1,093)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 11, cyto 9, nucl 6, cyto_mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011381)
HIX0011381
HIT000574696 (
ENST00000470210
)
(F-box/LRR-repeat protein 3; F-box and leucine-rich repeat protein 3A; F-box/LRR-repeat protein 3A;)
genome : 77,589,300 - 77,592,879 (3,580)
query : 1 - 561 (561/561)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, nucl 3, mito 2, cyto_nucl 2, golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011381)
HIX0011381
HIT000577301 (
ENST00000472949
)
(F-box/LRR-repeat protein 3; F-box and leucine-rich repeat protein 3A; F-box/LRR-repeat protein 3A;)
genome : 77,589,646 - 77,601,220 (11,575)
query : 1 - 329 (329/329)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011381)
HIX0011382
HIT000001827
(
AF083244
)
(Probable E3 ubiquitin-protein ligase MYCBP2; EC=6.3.2.-; Myc-binding protein 2; Pam/highwire/rpm-1 protein; Protein associated with Myc;)
genome : 77,618,792 - 77,632,469 (13,678)
query : 1 - 1,547 (1,547/1,567)
6 exons
identity = 0.996
3'(0.993;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.3.2.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, cyto 6.5, cyto_nucl 5.5, nucl 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011382)
HIX0011382
HIT000055849
(
BX647202
)
(Probable E3 ubiquitin-protein ligase MYCBP2; EC=6.3.2.-; Myc-binding protein 2; Pam/highwire/rpm-1 protein; Protein associated with Myc;)
genome : 77,618,792 - 77,669,737 (50,946)
query : 1 - 4,687 (4,687/4,704)
26 exons
identity = 0.998
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.993;0.995;1.000;0.970;0.993)5'
coverage = 1.000
EC number :
EC 6.3.2.-
InterPro :
IPR004939 : Anaphase-promoting complex, subunit 10/DOC domain
IPR008979 : Galactose-binding domain-like
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, mito 3, pero 3, mito_pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011382)
HIX0011382
HIT000066156
(
AF075587
)
Representative transcript
(Probable E3 ubiquitin-protein ligase MYCBP2; EC=6.3.2.-; Myc-binding protein 2; Pam/highwire/rpm-1 protein; Protein associated with Myc;)
genome : 77,618,792 - 77,901,177 (282,386)
query : 56 - 14,793 (14,738/14,807)
84 exons
identity = 0.998
3'(0.998;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.988;
1.000;1.000;1.000;1.000;0.996;1.000;0.998;
1.000;0.978;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.992;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.989;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.981;1.000;1.000;1.000;1.000;
0.994;1.000;1.000;0.986;1.000;1.000;1.000;
1.000;1.000;0.987;1.000;1.000;0.995;0.987)5'
coverage = 0.996
EC number :
EC 6.3.2.-
InterPro :
IPR000408 : Regulator of chromosome condensation, RCC1
IPR003646 : SH3-like domain, bacterial-type
IPR009091 : Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
IPR012983 : PHR
IPR014756 : Immunoglobulin E-set
IPR017868 : Filamin/ABP280 repeat-like
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 26, cyto 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011382)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB172282
Mus
sp. (Mouse) : AY325887
Danio
sp. (Zebrafish) : AY818192
Gallus
sp. (Chicken) : CR387447
Bos
sp. (Cow) : ENSBTAT00000046606
Equus
sp. (Horse) : ENSECAT00000013234
Oryzias
sp. (Medaka) : ENSORLT00000014398
Pan
sp. (Chimpanzee) : ENSPTRT00000042824
Takifugu
sp. (Fugu) : SINFRUT00000181449
Monodelphis
sp. (Opossum) : XM_001367378
Rattus
sp. (Rat) : XM_214245
Canis
sp. (Dog) : XM_534151
HIX0011382
HIT000205277 (
NM_015057
)
(Probable E3 ubiquitin-protein ligase MYCBP2; EC=6.3.2.-; Myc-binding protein 2; Pam/highwire/rpm-1 protein; Protein associated with Myc;)
genome : 77,618,792 - 77,901,177 (282,386)
query : 1 - 15,025 (15,025/15,025)
83 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.978;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.3.2.-
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 27, cyto 2, mito 2, cyto_mito 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011382)
HIX0011382
HIT000311196 (
ENST00000357337
)
(Probable E3 ubiquitin-protein ligase MYCBP2; EC=6.3.2.-; Myc-binding protein 2; Pam/highwire/rpm-1 protein; Protein associated with Myc;)
genome : 77,618,792 - 77,901,177 (282,386)
query : 1 - 14,735 (14,735/14,735)
84 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.978;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.3.2.-
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 26, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011382)
HIX0011382
HIT000506012 (
ENST00000407578
)
(Probable E3 ubiquitin-protein ligase MYCBP2; EC=6.3.2.-; Myc-binding protein 2; Pam/highwire/rpm-1 protein; Protein associated with Myc;)
genome : 77,618,792 - 77,901,177 (282,386)
query : 1 - 15,025 (15,025/15,025)
83 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.978;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.3.2.-
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 27, cyto 2, mito 2, cyto_mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011382)
HIX0011382
HIT000643485 (
ENST00000544440
)
(Probable E3 ubiquitin-protein ligase MYCBP2; EC=6.3.2.-; Myc-binding protein 2; Pam/highwire/rpm-1 protein; Protein associated with Myc;)
genome : 77,618,792 - 77,901,177 (282,386)
query : 1 - 15,025 (15,025/15,025)
83 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.978;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.3.2.-
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 27, cyto 2, mito 2, cyto_mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011382)
HIX0011382
HIT000000633
(
AB020723
)
(Probable E3 ubiquitin-protein ligase MYCBP2; EC=6.3.2.-; Myc-binding protein 2; Pam/highwire/rpm-1 protein; Protein associated with Myc;)
genome : 77,618,793 - 77,664,362 (45,570)
query : 1 - 4,354 (4,354/4,354)
24 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.3.2.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 20.5, cyto_mito 12.1667, mito_pero 11.1667,
extr 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011382)
HIX0011382
HIT000017518
(
AK092651
)
(Probable E3 ubiquitin-protein ligase MYCBP2; EC=6.3.2.-; Myc-binding protein 2; Pam/highwire/rpm-1 protein; Protein associated with Myc;)
genome : 77,618,793 - 77,621,426 (2,634)
query : 1 - 2,635 (2,635/2,635)
1 exon
identity = 0.998
3'(0.998)5'
coverage = 1.000
EC number :
EC 6.3.2.-
InterPro :
IPR027047 : E3 ubiquitin-protein ligase Highwire/Pam/Rpm-1
GO :
0004842 : Molecular Function : ubiquitin-protein transferase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 28, nucl 2.5, cyto_nucl 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011382)
HIX0011382
HIT000008524
(
AK025250
)
(Probable E3 ubiquitin-protein ligase MYCBP2; EC=6.3.2.-; Myc-binding protein 2; Pam/highwire/rpm-1 protein; Protein associated with Myc;)
genome : 77,619,050 - 77,661,649 (42,600)
query : 1 - 3,647 (3,647/3,663)
22 exons
identity = 0.999
3'(0.998;1.000;0.991;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.985;1.000;1.000;0.994;
1.000)5'
coverage = 1.000
EC number :
EC 6.3.2.-
InterPro :
IPR004939 : Anaphase-promoting complex, subunit 10/DOC domain
IPR008979 : Galactose-binding domain-like
IPR027047 : E3 ubiquitin-protein ligase Highwire/Pam/Rpm-1
GO :
0004842 : Molecular Function : ubiquitin-protein transferase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 14.5, nucl 11.5, extr 2, mito 2,
golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011382)
HIX0011382
HIT000008573
(
AK025299
)
(Probable E3 ubiquitin-protein ligase MYCBP2; EC=6.3.2.-; Myc-binding protein 2; Pam/highwire/rpm-1 protein; Protein associated with Myc;)
genome : 77,619,050 - 77,651,377 (32,328)
query : 1 - 2,871 (2,871/2,887)
17 exons
identity = 0.999
3'(1.000;1.000;0.991;0.995;1.000;0.995;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.3.2.-
InterPro :
IPR027047 : E3 ubiquitin-protein ligase Highwire/Pam/Rpm-1
GO :
0004842 : Molecular Function : ubiquitin-protein transferase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 20, cyto 6.5, cyto_nucl 6, nucl 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011382)
HIX0011382
HIT000527649 (
ENST00000429715
)
(Probable E3 ubiquitin-protein ligase MYCBP2; EC=6.3.2.-; Myc-binding protein 2; Pam/highwire/rpm-1 protein; Protein associated with Myc;)
genome : 77,619,050 - 77,661,649 (42,600)
query : 1 - 3,647 (3,647/3,660)
22 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
EC number :
EC 6.3.2.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 14.5, nucl 11.5, extr 2, mito 2,
golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011382)
HIX0011382
HIT000095072
(
BC037971
)
(Probable E3 ubiquitin-protein ligase MYCBP2; EC=6.3.2.-; Myc-binding protein 2; Pam/highwire/rpm-1 protein; Protein associated with Myc;)
genome : 77,619,166 - 77,651,528 (32,363)
query : 13 - 2,918 (2,906/2,932)
17 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.996)5'
coverage = 0.996
EC number :
EC 6.3.2.-
InterPro :
IPR027047 : E3 ubiquitin-protein ligase Highwire/Pam/Rpm-1
GO :
0004842 : Molecular Function : ubiquitin-protein transferase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 20, cyto 6.5, cyto_nucl 6, nucl 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011382)
HIX0171840
HIT000520165 (
ENST00000422231
)
(Conserved hypothetical protein.)
genome : 77,649,649 - 77,661,913 (12,265)
query : 1 - 519 (519/519)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0171840)
HIX0171840
HIT000548561 (
ENST00000450627
)
(Conserved hypothetical protein.)
genome : 77,649,649 - 77,661,913 (12,265)
query : 1 - 349 (349/349)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0171840)
HIX0171840
HIT000726827 (
NR_046716
)
(Conserved hypothetical protein.)
genome : 77,649,649 - 77,661,911 (12,263)
query : 1 - 517 (517/517)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0171840)
HIX0171840
HIT000546404 (
ENST00000448470
)
(Conserved hypothetical protein.)
genome : 77,649,653 - 77,661,834 (12,182)
query : 1 - 333 (333/333)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0171840)
HIX0171840
HIT000705743 (
ENST00000593933
)
(Conserved hypothetical protein.)
genome : 77,649,672 - 77,672,677 (23,006)
query : 1 - 717 (717/717)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 21, extr_plas 13, plas 3, nucl 3, mito 3,
mito_nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0171840)
HIX0171840
HIT000708131 (
ENST00000596342
)
(Conserved hypothetical protein.)
genome : 77,649,673 - 77,651,737 (2,065)
query : 1 - 834 (834/834)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0171840)
HIX0172079
HIT000526650 (
ENST00000428716
)
(Hypothetical short protein.)
genome : 77,654,646 - 77,655,325 (680)
query : 1 - 426 (426/426)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
This sequence is too short.
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0172079)
HIX0011382
HIT000588885 (
ENST00000485061
)
(Probable E3 ubiquitin-protein ligase MYCBP2; EC=6.3.2.-; Myc-binding protein 2; Pam/highwire/rpm-1 protein; Protein associated with Myc;)
genome : 77,667,422 - 77,671,763 (4,342)
query : 1 - 547 (547/547)
4 exons
identity = 0.998
3'(0.978;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.3.2.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, cyto 7, nucl 5, mito 5, mito_nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011382)
HIX0011382
HIT000024540
(
AL110277
)
(Probable E3 ubiquitin-protein ligase MYCBP2; EC=6.3.2.-; Myc-binding protein 2; Pam/highwire/rpm-1 protein; Protein associated with Myc;)
genome : 77,671,666 - 77,675,046 (3,381)
query : 1 - 3,381 (3,381/3,397)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
EC number :
EC 6.3.2.-
InterPro :
IPR027047 : E3 ubiquitin-protein ligase Highwire/Pam/Rpm-1
GO :
0004842 : Molecular Function : ubiquitin-protein transferase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 19, mito_nucl 15.3333, cyto_mito 11.8333,
nucl 10, cyto_nucl 8.16667
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011382)
HIX0011382
HIT000007162
(
AK023888
)
(Conserved hypothetical protein.)
genome : 77,671,667 - 77,700,612 (28,946)
query : 1 - 1,898 (1,898/1,898)
4 exons
identity = 0.997
3'(0.999;1.000;0.978;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, cyto 9.5, cyto_golg 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011382)
HIX0011382
HIT000313519 (
ENST00000360084
)
(Probable E3 ubiquitin-protein ligase MYCBP2; EC=6.3.2.-; Myc-binding protein 2; Pam/highwire/rpm-1 protein; Protein associated with Myc;)
genome : 77,672,203 - 77,901,179 (228,977)
query : 1 - 9,243 (9,243/9,243)
58 exons
identity = 0.999
3'(0.998;1.000;1.000;0.978;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.3.2.-
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 27, cyto 2, golg 2, cyto_golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011382)
HIX0011382
HIT000003442
(
AK000968
)
(Probable E3 ubiquitin-protein ligase MYCBP2; EC=6.3.2.-; Myc-binding protein 2; Pam/highwire/rpm-1 protein; Protein associated with Myc;)
genome : 77,672,203 - 77,700,651 (28,449)
query : 1 - 1,582 (1,582/1,582)
5 exons
identity = 0.996
3'(0.998;1.000;1.000;0.971;0.995)5'
coverage = 1.000
EC number :
EC 6.3.2.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28.5, cyto_nucl 17.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011382)
HIX0011382
HIT000586443 (
ENST00000482517
)
(Probable E3 ubiquitin-protein ligase MYCBP2; EC=6.3.2.-; Myc-binding protein 2; Pam/highwire/rpm-1 protein; Protein associated with Myc;)
genome : 77,672,203 - 77,700,651 (28,449)
query : 1 - 1,581 (1,581/1,581)
5 exons
identity = 0.998
3'(1.000;1.000;1.000;0.978;1.000)5'
coverage = 1.000
EC number :
EC 6.3.2.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28.5, cyto_nucl 17.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011382)
HIX0011382
HIT000567798 (
ENST00000462987
)
(Probable E3 ubiquitin-protein ligase MYCBP2; EC=6.3.2.-; Myc-binding protein 2; Pam/highwire/rpm-1 protein; Protein associated with Myc;)
genome : 77,672,936 - 77,692,591 (19,656)
query : 1 - 432 (432/432)
3 exons
identity = 0.995
3'(1.000;0.980;1.000)5'
coverage = 1.000
EC number :
EC 6.3.2.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, mito_nucl 15.3333, mito 12,
cyto_nucl 9.16667
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011382)
HIX0011382
HIT000571209 (
ENST00000466564
)
(Probable E3 ubiquitin-protein ligase MYCBP2; EC=6.3.2.-; Myc-binding protein 2; Pam/highwire/rpm-1 protein; Protein associated with Myc;)
genome : 77,695,359 - 77,699,561 (4,203)
query : 1 - 363 (363/363)
2 exons
identity = 0.994
3'(1.000;0.979)5'
coverage = 1.000
EC number :
EC 6.3.2.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 11.5, extr 11, nucl 10.5, cyto 9.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011382)
HIX0011382
HIT000601311 (
ENST00000498073
)
(Probable E3 ubiquitin-protein ligase MYCBP2; EC=6.3.2.-; Myc-binding protein 2; Pam/highwire/rpm-1 protein; Protein associated with Myc;)
genome : 77,695,506 - 77,715,076 (19,571)
query : 1 - 912 (912/912)
7 exons
identity = 0.993
3'(1.000;0.986;0.996;0.973;0.993;1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.3.2.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, cyto_nucl 13, nucl 11, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011382)
HIX0059205
HIT000332752
(
AY927590
)
Representative transcript
(Hypothetical short protein.)
genome : 77,710,736 - 77,711,492 (757)
query : 1 - 757 (757/757)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, extr 14, nucl 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0059205)
HIX0011382
HIT000590420 (
ENST00000486679
)
(E3 ubiquitin-protein ligase highwire; EC=6.3.2.-; Protein pam/highwire/rpm-1;)
genome : 77,718,254 - 77,724,913 (6,660)
query : 1 - 541 (541/541)
3 exons
identity = 0.989
3'(0.995;0.964;0.956)5'
coverage = 1.000
EC number :
EC 6.3.2.-
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto_nucl 17.5, nucl 12.5, cyto 11.5, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011382)
HIX0011382
HIT000579156 (
ENST00000474882
)
(Probable E3 ubiquitin-protein ligase MYCBP2; EC=6.3.2.-; Myc-binding protein 2; Pam/highwire/rpm-1 protein; Protein associated with Myc;)
genome : 77,844,166 - 77,847,646 (3,481)
query : 1 - 394 (394/394)
4 exons
identity = 0.997
3'(1.000;1.000;1.000;0.976)5'
coverage = 1.000
EC number :
EC 6.3.2.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 24, pero 3, golg 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011382)
HIX0011382
HIT000595015 (
ENST00000491491
)
(Probable E3 ubiquitin-protein ligase MYCBP2; EC=6.3.2.-; Myc-binding protein 2; Pam/highwire/rpm-1 protein; Protein associated with Myc;)
genome : 77,870,738 - 77,901,185 (30,448)
query : 1 - 649 (649/649)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.3.2.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto 7, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011382)
HIX0011383
HIT000053164
(
BC047536
)
(Sciellin isoform 2.)
genome : 78,049,967 - 78,219,391 (169,425)
query : 1 - 3,230 (3,230/3,272)
32 exons
identity = 0.998
5'(1.000)3'
coverage = 1.000
InterPro :
IPR001781 : Zinc finger, LIM-type
GO :
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011383)
AL359392.9
76500001-76542003 F +
NCBI
AL606825.4
76542004-76629767 F +
NCBI
AL162453.18
76629768-76681961 F +
NCBI
AL445929.5
76681962-76849364 F +
NCBI
AL353673.16
76849365-76939988 F +
NCBI
AL672235.4
76939989-76977666 F +
NCBI
AL591413.2
76977667-76979660 F +
NCBI
AL355572.13
76979661-77058984 F +
NCBI
AL136441.16
77058985-77239876 F +
NCBI
AL161717.15
77239877-77343496 F +
NCBI
AL365394.26
77343497-77431242 F +
NCBI
AL606743.5
77431243-77452409 F +
NCBI
AC000403.1
77452410-77542726 F +
NCBI
AC001226.1
77542727-77649714 F +
NCBI
AL359257.9
77649715-77722508 F +
NCBI
AL159154.16
77722509-77847372 F +
NCBI
AL159158.12
77847373-78001954 F +
NCBI
AL161900.8
78001955-78033102 F +
NCBI
AL137140.12
78033103-78100000 F +
NCBI