bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0221237
HIT000668775 (
ENST00000555433
)
(Hypothetical short protein.)
genome : 44,976,612 - 45,007,716 (31,105)
query : 1 - 379 (379/379)
3 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, mito 8, cyto_nucl 5.5, nucl 5, cyto 4,
E.R._mito 4, mito_pero 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0221237)
HIX0221237
HIT000669552 (
ENST00000556228
)
(Conserved hypothetical protein.)
genome : 44,978,206 - 45,007,714 (29,509)
query : 1 - 467 (467/467)
2 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, extr 11, cyto_nucl 11
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0221237)
HIX0026682
HIT000043558
(
AK123685
)
Representative transcript
(Conserved hypothetical protein.)
genome : 45,232,360 - 45,252,032 (19,673)
query : 1 - 2,905 (2,905/2,905)
3 exons
identity = 0.994
5'(0.998;0.923;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 28, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026682)
HIX0221695
HIT000669726 (
ENST00000556405
)
(Conserved hypothetical protein.)
genome : 45,232,360 - 45,252,032 (19,673)
query : 1 - 2,904 (2,904/2,904)
3 exons
identity = 0.995
3'(0.999;0.923;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17, extr 11, cyto 2.5, cyto_nucl 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0221695)
HIX0221407
HIT000666856 (
ENST00000553480
)
(Dedicator of cytokinesis C-terminal domain containing protein.)
genome : 45,329,519 - 45,335,450 (5,932)
query : 1 - 5,932 (5,932/5,932)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 20.5, mito_nucl 12, cyto 7.5, cyto_nucl 6.33333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0221407)
HIX0221499
HIT000667754 (
ENST00000554389
)
(Conserved hypothetical protein.)
genome : 45,346,077 - 45,366,280 (20,204)
query : 1 - 693 (693/693)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 13, nucl 10, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0221499)
HIX0221751
HIT000670498 (
ENST00000557196
)
(Ubiquitin ligase, Det1/DDB1-complexing domain containing protein.)
genome : 45,356,637 - 45,356,944 (308)
query : 1 - 308 (308/308)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, cyto 2, cysk 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0221751)
HIX0221632
HIT000669078 (
ENST00000555741
)
(Gtr1/RagA G protein family protein.)
genome : 45,357,759 - 45,358,244 (486)
query : 1 - 486 (486/486)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15.5, cyto 14, extr 8, nucl 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0221632)
HIX0026653
HIT000124124 (
ENST00000325192
)
(Conserved hypothetical protein.)
genome : 45,366,498 - 45,376,460 (9,963)
query : 1 - 2,915 (2,915/2,915)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 15, nucl 5, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026653)
HIX0026653
HIT000365520 (
NM_001017923
)
(Conserved hypothetical protein.)
genome : 45,366,507 - 45,376,460 (9,954)
query : 1 - 2,906 (2,906/2,906)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 15, nucl 5, extr 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026653)
HIX0026653
HIT000338118
(
BC105030
)
(Conserved hypothetical protein.)
genome : 45,366,514 - 45,374,793 (8,280)
query : 1 - 1,232 (1,232/1,232)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 15, nucl 5, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026653)
HIX0026653
HIT000338120
(
BC105032
)
(Conserved hypothetical protein.)
genome : 45,366,514 - 45,374,793 (8,280)
query : 1 - 1,232 (1,232/1,232)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 15, nucl 5, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026653)
HIX0026653
HIT000330074
(
AF250395
)
Representative transcript
(Conserved hypothetical protein.)
genome : 45,366,519 - 45,375,004 (8,486)
query : 1 - 1,434 (1,434/1,449)
5 exons
identity = 0.994
5'(0.965;1.000;1.000;1.000;1.000)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 15, nucl 5, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026653)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : BC099503
Equus
sp. (Horse) : ENSECAT00000007092
Oryzias
sp. (Medaka) : ENSORLT00000021421
Pongo
sp. (Orangutan) : ENSPPYT00000006821
Tetraodon
sp. (Tetraodon) : GSTENT00032428001
Takifugu
sp. (Fugu) : SINFRUT00000145064
Macaca
sp. (Macaque) : XM_001094553
Pan
sp. (Chimpanzee) : XM_001149836
Monodelphis
sp. (Opossum) : XM_001368846
Rattus
sp. (Rat) : XM_234234
Canis
sp. (Dog) : XM_847837
HIX0026653
HIT000670415 (
ENST00000557112
)
(Conserved hypothetical protein.)
genome : 45,366,538 - 45,374,772 (8,235)
query : 1 - 1,097 (1,097/1,097)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 16, nucl 5, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026653)
HIX0221574
HIT000668505 (
ENST00000555157
)
(Hypothetical short protein.)
genome : 45,368,111 - 45,381,066 (12,956)
query : 1 - 360 (360/360)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0221574)
HIX0026653
HIT000046858
(
AK126985
)
(Conserved hypothetical protein.)
genome : 45,369,617 - 45,376,459 (6,843)
query : 1 - 3,498 (3,498/3,498)
3 exons
identity = 0.999
5'(1.000;1.000;0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11.5, cyto_nucl 9.5, extr 7, mito 6, nucl 4.5,
mito_pero 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026653)
HIX0026653
HIT000669162 (
ENST00000555826
)
(Conserved hypothetical protein.)
genome : 45,369,617 - 45,376,459 (6,843)
query : 1 - 3,498 (3,498/3,498)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11.5, cyto_nucl 9.5, extr 7, mito 6, nucl 4.5,
mito_pero 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026653)
HIX0026653
HIT000092104
(
BC030258
)
(Conserved hypothetical protein.)
genome : 45,369,646 - 45,374,718 (5,073)
query : 12 - 902 (891/919)
4 exons
identity = 0.999
5'(1.000;1.000;0.993;1.000)3'
coverage = 0.987
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 11.5, cysk 8, nucl 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026653)
HIX0026653
HIT000667212 (
ENST00000553841
)
(Conserved hypothetical protein.)
genome : 45,369,959 - 45,373,732 (3,774)
query : 1 - 520 (520/520)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, cyto_nucl 9.5, extr 7, cysk 6, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026653)
HIX0011619
HIT000015839
(
AK090972
)
(Conserved hypothetical protein.)
genome : 45,393,091 - 45,395,519 (2,429)
query : 1 - 2,429 (2,429/2,429)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, extr 6, mito 6, nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011619)
HIX0011619
HIT000206537 (
NM_017658
)
(BTB/POZ domain containing protein.)
genome : 45,393,527 - 45,431,179 (37,653)
query : 1 - 6,551 (6,551/6,568)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, cyto_nucl 11.5, plas 4, nucl 4, mito 3.5,
E.R. 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011619)
HIX0011619
HIT000422652
(
AK289855
)
(BTB/POZ domain containing protein.)
genome : 45,397,672 - 45,431,168 (33,497)
query : 1 - 2,394 (2,394/2,394)
5 exons
identity = 0.999
3'(0.999;1.000;1.000;0.999;1.000)5'
coverage = 1.000
InterPro :
IPR000210 : BTB/POZ-like
IPR006652 : Kelch repeat type 1
IPR011043 : Galactose oxidase/kelch, beta-propeller
IPR011333 : BTB/POZ fold
IPR011705 : BTB/Kelch-associated
IPR013069 : BTB/POZ
IPR015916 : Galactose oxidase, beta-propeller
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, cyto_nucl 11.5, plas 4, nucl 4, mito 3.5,
E.R. 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011619)
HIX0011619
HIT000479481 (
ENST00000396128
)
(BTB/POZ domain containing protein.)
genome : 45,397,672 - 45,431,168 (33,497)
query : 1 - 2,395 (2,395/2,395)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, cyto_nucl 11.5, plas 4, nucl 4, mito 3.5,
E.R. 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011619)
HIX0011619
HIT000259732
(
BC057794
)
(BTB/POZ domain containing protein.)
genome : 45,398,017 - 45,430,335 (32,319)
query : 1 - 2,174 (2,174/2,189)
5 exons
identity = 0.998
3'(0.997;0.990;1.000;0.999;1.000)5'
coverage = 1.000
InterPro :
IPR000210 : BTB/POZ-like
IPR006652 : Kelch repeat type 1
IPR011043 : Galactose oxidase/kelch, beta-propeller
IPR011333 : BTB/POZ fold
IPR011705 : BTB/Kelch-associated
IPR013069 : BTB/POZ
IPR015916 : Galactose oxidase, beta-propeller
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 10.5, cyto_nucl 8, mito 6.5, E.R. 5, mito_pero 5,
nucl 4.5, plas 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011619)
HIX0011619
HIT000309275 (
ENST00000355081
)
(BTB/POZ domain containing protein.)
genome : 45,398,016 - 45,430,335 (32,320)
query : 1 - 2,177 (2,177/2,177)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 10.5, cyto_nucl 8, mito 6.5, E.R. 5, mito_pero 5,
nucl 4.5, plas 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011619)
HIX0011619
HIT000388206
(
BC121009
)
Representative transcript
(BTB/POZ domain containing protein.)
genome : 45,398,141 - 45,431,091 (32,951)
query : 1 - 1,849 (1,849/1,849)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000210 : BTB/POZ-like
IPR006652 : Kelch repeat type 1
IPR011043 : Galactose oxidase/kelch, beta-propeller
IPR011333 : BTB/POZ fold
IPR011705 : BTB/Kelch-associated
IPR013069 : BTB/POZ
IPR015916 : Galactose oxidase, beta-propeller
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, cyto_nucl 11.5, plas 4, nucl 4, mito 3.5,
E.R. 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011619)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB179382
Mus
sp. (Mouse) : AK014466
Monodelphis
sp. (Opossum) : ENSMODT00000009498
Oryzias
sp. (Medaka) : ENSORLT00000021429
Pongo
sp. (Orangutan) : ENSPPYT00000006822
Tetraodon
sp. (Tetraodon) : GSTENT00032429001
Takifugu
sp. (Fugu) : SINFRUT00000145063
Rattus
sp. (Rat) : XM_001080070
Equus
sp. (Horse) : XM_001493292
Canis
sp. (Dog) : XM_547790
Pan
sp. (Chimpanzee) : XR_024026
HIX0011619
HIT000388207
(
BC121010
)
(BTB/POZ domain containing protein.)
genome : 45,398,141 - 45,431,091 (32,951)
query : 1 - 1,849 (1,849/1,849)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000210 : BTB/POZ-like
IPR006652 : Kelch repeat type 1
IPR011043 : Galactose oxidase/kelch, beta-propeller
IPR011333 : BTB/POZ fold
IPR011705 : BTB/Kelch-associated
IPR013069 : BTB/POZ
IPR015916 : Galactose oxidase, beta-propeller
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, cyto_nucl 11.5, plas 4, nucl 4, mito 3.5,
E.R. 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011619)
HIX0011619
HIT000087868
(
BC012473
)
(BTB/POZ domain containing protein.)
genome : 45,406,895 - 45,415,132 (8,238)
query : 1 - 1,022 (1,022/1,036)
2 exons
identity = 0.999
3'(1.000;0.999)5'
coverage = 1.000
InterPro :
IPR000210 : BTB/POZ-like
IPR011333 : BTB/POZ fold
IPR011705 : BTB/Kelch-associated
IPR013069 : BTB/POZ
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto_nucl 8.5, cyto 7.5, nucl 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011619)
HIX0021017
HIT000018630
(
AK093763
)
Representative transcript
(Conserved hypothetical protein.)
genome : 45,407,755 - 45,409,773 (2,019)
query : 1 - 2,019 (2,019/2,019)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, nucl 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021017)
HIX0011619
HIT000002563
(
AK000088
)
(Conserved hypothetical protein.)
genome : 45,412,934 - 45,415,138 (2,205)
query : 1 - 2,204 (2,204/2,219)
1 exon
identity = 0.996
3'(0.996)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, cyto_nucl 12, extr 9, nucl 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011619)
HIX0011619
HIT000384313
(
AK225183
)
(BTB/POZ domain containing protein.)
genome : 45,413,544 - 45,415,138 (1,595)
query : 1 - 1,594 (1,594/1,594)
1 exon
identity = 0.996
3'(0.996)5'
coverage = 1.000
InterPro :
IPR000210 : BTB/POZ-like
IPR011333 : BTB/POZ fold
IPR011705 : BTB/Kelch-associated
IPR013069 : BTB/POZ
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, cyto_nucl 12, extr 9, nucl 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011619)
HIX0011619
HIT000384341
(
AK225211
)
(BTB/POZ domain containing protein.)
genome : 45,414,215 - 45,415,138 (924)
query : 1 - 924 (924/924)
1 exon
identity = 0.996
3'(0.996)5'
coverage = 1.000
InterPro :
IPR000210 : BTB/POZ-like
IPR011333 : BTB/POZ fold
IPR011705 : BTB/Kelch-associated
IPR013069 : BTB/POZ
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, cyto_nucl 12, extr 9, nucl 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011619)
HIX0011619
HIT000691090 (
ENST00000579157
)
(BTB/POZ domain containing protein.)
genome : 45,414,436 - 45,431,112 (16,677)
query : 1 - 847 (847/847)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto_nucl 10.5, nucl 10, cyto 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011619)
HIX0011619
HIT000669819 (
ENST00000556500
)
(BTB/POZ domain containing protein.)
genome : 45,414,644 - 45,431,170 (16,527)
query : 1 - 859 (859/859)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto_nucl 11, cyto 10, nucl 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011619)
HIX0011619
HIT000669563 (
ENST00000556239
)
(Kelch-like protein 20; Kelch-like ECT2-interacting protein; Kelch-like protein X;)
genome : 45,414,880 - 45,511,511 (96,632)
query : 1 - 546 (546/546)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15.5, cyto 13.5, nucl 10.5, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011619)
HIX0011619
HIT000670765 (
ENST00000557468
)
(BTB/POZ fold domain containing protein.)
genome : 45,414,995 - 45,431,393 (16,399)
query : 1 - 656 (656/656)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, cyto_nucl 8, cyto 7.5, nucl 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011619)
HIX0202040
HIT000489809
(
AK295185
)
(Protein FAM179B.)
genome : 45,431,393 - 45,497,421 (66,029)
query : 1 - 3,777 (3,777/3,777)
10 exons
identity = 0.998
5'(0.999;1.000;1.000;1.000;0.996;1.000;1.000;
0.989;0.989;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, mito 8.5, extr 6, mito_pero 6, pero 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202040)
HIX0202040
HIT000314837 (
ENST00000361577
)
(Protein FAM179B;)
genome : 45,431,411 - 45,543,634 (112,224)
query : 1 - 6,247 (6,247/6,247)
19 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11.5, cyto_nucl 8.5, extr 8, mito 8, cyto 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202040)
HIX0202040
HIT000000140
(
AB007883
)
(Conserved hypothetical protein.)
genome : 45,431,411 - 45,543,633 (112,223)
query : 1 - 6,246 (6,246/6,246)
19 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;0.996;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, mito 8.5, extr 6, mito_pero 6, pero 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202040)
HIX0202040
HIT000306565
(
CR749557
)
Representative transcript
(Protein FAM179B.)
genome : 45,431,416 - 45,543,634 (112,219)
query : 2 - 6,235 (6,234/6,252)
20 exons
identity = 0.999
5'(0.999;1.000;1.000;1.000;1.000;0.990;0.984;
1.000;1.000;1.000;1.000;1.000;0.996;1.000;
1.000;1.000;0.995;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, mito 8.5, extr 6, mito_pero 6, pero 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202040)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK172948
Monodelphis
sp. (Opossum) : ENSMODT00000009476
Rattus
sp. (Rat) : ENSRNOT00000059271
Tetraodon
sp. (Tetraodon) : GSTENT00032430001
Takifugu
sp. (Fugu) : SINFRUT00000145061
Macaca
sp. (Macaque) : XM_001095789
Pan
sp. (Chimpanzee) : XM_001150036
Gallus
sp. (Chicken) : XM_421483
Canis
sp. (Dog) : XM_547791
HIX0202040
HIT000317199 (
NM_015091
)
(Protein FAM179B;)
genome : 45,431,416 - 45,543,634 (112,219)
query : 1 - 6,242 (6,242/6,257)
19 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11.5, cyto_nucl 8.5, extr 8, mito 8, cyto 2.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202040)
HIX0202040
HIT000670720 (
ENST00000557423
)
(Protein FAM179B.)
genome : 45,431,416 - 45,543,634 (112,219)
query : 1 - 6,232 (6,232/6,232)
20 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, mito 8.5, extr 6, mito_pero 6, pero 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202040)
HIX0202040
HIT000259671
(
BC057255
)
(Conserved hypothetical protein.)
genome : 45,431,417 - 45,477,348 (45,932)
query : 2 - 4,990 (4,989/4,992)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;0.999)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, mito 8.5, extr 6, mito_pero 6, pero 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202040)
HIX0202040
HIT000668946 (
ENST00000555607
)
(Conserved hypothetical protein.)
genome : 45,431,417 - 45,477,350 (45,934)
query : 1 - 4,992 (4,992/4,992)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, mito 8.5, extr 6, mito_pero 6, pero 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202040)
HIX0202040
HIT000429900
(
AK311034
)
(Protein FAM179B.)
genome : 45,431,422 - 45,466,607 (35,186)
query : 1 - 3,908 (3,908/3,908)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
InterPro :
IPR011989 : Armadillo-like helical
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 10.5, cyto_nucl 9, cyto 6.5, mito 6.5, extr 5,
E.R._mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202040)
HIX0202040
HIT000669281 (
ENST00000555945
)
(Protein FAM179B.)
genome : 45,431,422 - 45,466,607 (35,186)
query : 1 - 3,908 (3,908/3,908)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 11, nucl 8, mito 7.5, cyto_mito 5.5, cyto 2.5,
E.R. 1.5, E.R._golg 1.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202040)
HIX0202040
HIT000021789
(
AK096934
)
(Protein FAM179B.)
genome : 45,431,422 - 45,433,579 (2,158)
query : 1 - 2,158 (2,158/2,158)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
InterPro :
IPR011989 : Armadillo-like helical
IPR028401 : Protein FAM179B
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, nucl 7, mito 7, cyto_mito 5.5, cyto 2,
E.R. 2, lyso 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202040)
HIX0202040
HIT000057370
(
BX648723
)
(Conserved hypothetical protein.)
genome : 45,431,442 - 45,543,632 (112,191)
query : 1 - 6,373 (6,373/6,394)
20 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;0.996;1.000;1.000;
1.000;1.000;0.994;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, mito 8.5, extr 6, mito_pero 6, pero 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202040)
HIX0202040
HIT000314725 (
ENST00000361462
)
(Conserved hypothetical protein.)
genome : 45,431,442 - 45,543,634 (112,193)
query : 1 - 6,375 (6,375/6,375)
20 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, mito 8.5, extr 6, mito_pero 6, pero 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202040)
HIX0202040
HIT000363511 (
ENST00000382233
)
(Protein FAM179B.)
genome : 45,431,442 - 45,543,632 (112,191)
query : 1 - 6,140 (6,140/6,140)
19 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, mito 8.5, extr 6, mito_pero 6, pero 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202040)
HIX0202040
HIT000426588
(
AK307722
)
(Protein FAM179B.)
genome : 45,431,442 - 45,433,580 (2,139)
query : 1 - 1,985 (1,985/1,985)
2 exons
identity = 0.998
5'(0.988;0.998)3'
coverage = 1.000
InterPro :
IPR011989 : Armadillo-like helical
IPR028401 : Protein FAM179B
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 19.5, cyto_mito 11.3333, nucl 8.5,
cyto_nucl 5.83333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202040)
HIX0011619
HIT000667188 (
ENST00000553817
)
(Conserved hypothetical protein.)
genome : 45,433,054 - 45,511,525 (78,472)
query : 1 - 550 (550/550)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17.5, mito_nucl 13.3333, nucl 8,
cyto_nucl 5.33333, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011619)
HIX0202040
HIT000669210 (
ENST00000555874
)
(Protein FAM179B.)
genome : 45,464,683 - 45,473,491 (8,809)
query : 1 - 544 (544/544)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 12, nucl 10, cyto 10, extr 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202040)
HIX0202040
HIT000670550 (
ENST00000557250
)
(Protein FAM179B.)
genome : 45,465,022 - 45,475,470 (10,449)
query : 1 - 479 (479/479)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 21, nucl 5.5, cyto_nucl 4.5, cyto 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202040)
HIX0202040
HIT000261797
(
BC065234
)
(Protein FAM179B.)
genome : 45,478,137 - 45,543,634 (65,498)
query : 1 - 3,267 (3,267/3,282)
15 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
InterPro :
IPR011989 : Armadillo-like helical
IPR024395 : CLASP N-terminal domain
IPR028401 : Protein FAM179B
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, cyto 2, mito 2, cyto_mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202040)
HIX0202040
HIT000669435 (
ENST00000556105
)
(Protein FAM179B.)
genome : 45,481,090 - 45,497,499 (16,410)
query : 1 - 576 (576/576)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, nucl 10.5, cyto_nucl 10, cyto 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202040)
HIX0202040
HIT000668926 (
ENST00000555586
)
(Protein FAM179B.)
genome : 45,494,676 - 45,496,537 (1,862)
query : 1 - 436 (436/436)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 28, mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202040)
HIX0202040
HIT000670132 (
ENST00000556823
)
(Protein FAM179B.)
genome : 45,537,645 - 45,543,006 (5,362)
query : 1 - 710 (710/710)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23, cyto_nucl 17, nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202040)
HIX0037899
HIT000095317
(
BC038722
)
Representative transcript
(Hypothetical short protein.)
genome : 45,552,254 - 45,553,180 (927)
query : 1 - 797 (797/814)
3 exons
identity = 0.995
3'(0.945;0.996;1.000)5'
coverage = 0.997
SOSUI :
SOLUBLE PROTEIN
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037899)
HIX0037899
HIT000669710 (
ENST00000556389
)
(Conserved hypothetical protein.)
genome : 45,552,248 - 45,553,180 (933)
query : 1 - 849 (849/849)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037899)
HIX0221720
HIT000670092 (
ENST00000556782
)
(Conserved hypothetical protein.)
genome : 45,553,321 - 45,564,936 (11,616)
query : 1 - 645 (645/645)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16, cyto_nucl 12, extr 9, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0221720)
HIX0131736
HIT000474840 (
ENST00000391313
)
(Non-protein coding transcript.)
genome : 45,557,446 - 45,557,511 (66)
query : 1 - 66 (66/66)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0131736)
HIX0220920
HIT000670774 (
ENST00000557477
)
(Conserved hypothetical protein.)
genome : 45,566,109 - 45,579,379 (13,271)
query : 1 - 724 (724/724)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 23, extr 5, nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220920)
HIX0220920
HIT000099451
(
BC051886
)
Representative transcript
(Tetratricopeptide-like helical domain containing protein.)
genome : 45,571,731 - 45,584,803 (13,073)
query : 1 - 2,125 (2,125/2,152)
10 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.995)3'
coverage = 1.000
InterPro :
IPR003107 : HAT (Half-A-TPR) repeat
IPR011990 : Tetratricopeptide-like helical domain
GO :
0005515 : Molecular Function : protein binding
0005622 : Cellular Component : intracellular
0006396 : Biological Process : RNA processing
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, cyto_nucl 14.5, nucl 7, cysk 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220920)
HIX0220920
HIT000004464
(
AK001990
)
(Conserved hypothetical protein.)
genome : 45,578,935 - 45,584,799 (5,865)
query : 1 - 2,120 (2,120/2,120)
5 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;0.997)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, nucl 11, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220920)
HIX0220920
HIT000668138 (
ENST00000554785
)
(Tetratricopeptide-like helical domain containing protein.)
genome : 45,578,935 - 45,584,799 (5,865)
query : 1 - 2,121 (2,121/2,121)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, nucl 11, mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220920)
HIX0220920
HIT000670030 (
ENST00000556718
)
(Conserved hypothetical protein.)
genome : 45,578,946 - 45,579,872 (927)
query : 1 - 499 (499/499)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, cyto 6.5, cyto_nucl 5, nucl 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220920)
HIX0220920
HIT000090197
(
BC020655
)
(Tetratricopeptide-like helical domain containing protein.)
genome : 45,579,067 - 45,583,440 (4,374)
query : 1 - 866 (866/896)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR011990 : Tetratricopeptide-like helical domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18.5, cyto_nucl 12.5, cyto 5.5, extr 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220920)
HIX0096248
HIT000486390 (
NR_003691
)
(Non-protein coding transcript.)
genome : 45,580,078 - 45,580,178 (101)
query : 1 - 101 (101/101)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0096248)
HIX0096248
HIT000556826 (
ENST00000458892
)
(Non-protein coding transcript.)
genome : 45,580,086 - 45,580,171 (86)
query : 1 - 86 (86/86)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0096248)
HIX0220920
HIT000047255
(
AK127382
)
(Conserved hypothetical protein.)
genome : 45,580,261 - 45,582,072 (1,812)
query : 1 - 1,809 (1,809/1,809)
1 exon
identity = 0.996
5'(0.996)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 24.5, cyto_nucl 14.5, nucl 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220920)
HIX0011622
HIT000198939 (
NM_002013
)
(Peptidyl-prolyl cis-trans isomerase FKBP3; PPIase FKBP3; EC=5.2.1.8; 25 kDa FK506-binding protein; 25 kDa FKBP; FKBP-25; FK506-binding protein 3; FKBP-3; Immunophilin FKBP25; Rapamycin-selective 25 kDa immunophilin; Rotamase;)
genome : 45,584,802 - 45,603,732 (18,931)
query : 1 - 1,347 (1,347/1,353)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.996
EC number :
EC 5.2.1.8
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, mito 12, cyto_nucl 10.5, nucl 7.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011622)
HIX0011622
HIT000103052 (
ENST00000216330
)
(Peptidyl-prolyl cis-trans isomerase FKBP3; PPIase FKBP3; EC=5.2.1.8; 25 kDa FK506-binding protein; 25 kDa FKBP; FKBP-25; FK506-binding protein 3; FKBP-3; Immunophilin FKBP25; Rapamycin-selective 25 kDa immunophilin; Rotamase;)
genome : 45,584,803 - 45,604,522 (19,720)
query : 1 - 1,684 (1,684/1,684)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
EC number :
EC 5.2.1.8
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, mito 12, cyto_nucl 10.5, nucl 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011622)
HIX0011622
HIT000479417 (
ENST00000396062
)
(Peptidyl-prolyl cis-trans isomerase FKBP3; PPIase FKBP3; EC=5.2.1.8; 25 kDa FK506-binding protein; 25 kDa FKBP; FKBP-25; FK506-binding protein 3; FKBP-3; Immunophilin FKBP25; Rapamycin-selective 25 kDa immunophilin; Rotamase;)
genome : 45,584,803 - 45,603,732 (18,930)
query : 1 - 1,346 (1,346/1,346)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 5.2.1.8
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, mito 12, cyto_nucl 10.5, nucl 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011622)
HIX0011622
HIT000037515
(
BC016288
)
Representative transcript
(Peptidyl-prolyl cis-trans isomerase FKBP3; PPIase FKBP3; EC=5.2.1.8; 25 kDa FK506-binding protein; 25 kDa FKBP; FKBP-25; FK506-binding protein 3; FKBP-3; Immunophilin FKBP25; Rapamycin-selective 25 kDa immunophilin; Rotamase;)
genome : 45,585,109 - 45,604,522 (19,414)
query : 1 - 1,378 (1,378/1,420)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 0.999
EC number :
EC 5.2.1.8
InterPro :
IPR001179 : Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain
IPR023566 : Peptidyl-prolyl cis-trans isomerase, FKBP-type
GO :
0006457 : Biological Process : protein folding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, mito 12, cyto_nucl 10.5, nucl 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011622)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB170113
Mus
sp. (Mouse) : AK145648
Bos
sp. (Cow) : BC109932
Tetraodon
sp. (Tetraodon) : CR659719
Gallus
sp. (Chicken) : ENSGALT00000037183
Oryzias
sp. (Medaka) : ENSORLT00000018890
Pongo
sp. (Orangutan) : ENSPPYT00000006827
Takifugu
sp. (Fugu) : SINFRUT00000144593
Rattus
sp. (Rat) : XM_001080093
Monodelphis
sp. (Opossum) : XM_001368718
Equus
sp. (Horse) : XM_001494852
Pan
sp. (Chimpanzee) : XM_509926
Canis
sp. (Dog) : XM_846048
HIX0011622
HIT000038975
(
BC020809
)
(Peptidyl-prolyl cis-trans isomerase FKBP3; PPIase FKBP3; EC=5.2.1.8; 25 kDa FK506-binding protein; 25 kDa FKBP; FKBP-25; FK506-binding protein 3; FKBP-3; Immunophilin FKBP25; Rapamycin-selective 25 kDa immunophilin; Rotamase;)
genome : 45,585,105 - 45,603,670 (18,566)
query : 1 - 982 (982/1,011)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 5.2.1.8
InterPro :
IPR001179 : Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain
IPR023566 : Peptidyl-prolyl cis-trans isomerase, FKBP-type
GO :
0006457 : Biological Process : protein folding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, mito 12, cyto_nucl 10.5, nucl 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011622)
HIX0011622
HIT000196923
(
M96256
)
(Peptidyl-prolyl cis-trans isomerase FKBP3; PPIase FKBP3; EC=5.2.1.8; 25 kDa FK506-binding protein; 25 kDa FKBP; FKBP-25; FK506-binding protein 3; FKBP-3; Immunophilin FKBP25; Rapamycin-selective 25 kDa immunophilin; Rotamase;)
genome : 45,585,136 - 45,603,681 (18,546)
query : 2 - 964 (963/964)
7 exons
identity = 0.998
3'(0.997;1.000;1.000;1.000;1.000;1.000;0.992)5'
coverage = 0.999
EC number :
EC 5.2.1.8
InterPro :
IPR001179 : Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain
IPR023566 : Peptidyl-prolyl cis-trans isomerase, FKBP-type
GO :
0006457 : Biological Process : protein folding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, mito 12, cyto_nucl 10.5, nucl 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011622)
HIX0011622
HIT000330773
(
AK222993
)
(Peptidyl-prolyl cis-trans isomerase FKBP3; PPIase FKBP3; EC=5.2.1.8; 25 kDa FK506-binding protein; 25 kDa FKBP; FKBP-25; FK506-binding protein 3; FKBP-3; Immunophilin FKBP25; Rapamycin-selective 25 kDa immunophilin; Rotamase;)
genome : 45,585,207 - 45,603,681 (18,475)
query : 1 - 891 (891/891)
7 exons
identity = 0.998
3'(1.000;0.990;1.000;1.000;0.991;1.000;1.000)5'
coverage = 1.000
EC number :
EC 5.2.1.8
InterPro :
IPR001179 : Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain
IPR023566 : Peptidyl-prolyl cis-trans isomerase, FKBP-type
GO :
0006457 : Biological Process : protein folding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, mito 12, cyto_nucl 10.5, nucl 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011622)
HIX0011622
HIT000430781
(
AK311915
)
(Peptidyl-prolyl cis-trans isomerase FKBP3; PPIase FKBP3; EC=5.2.1.8; 25 kDa FK506-binding protein; 25 kDa FKBP; FKBP-25; FK506-binding protein 3; FKBP-3; Immunophilin FKBP25; Rapamycin-selective 25 kDa immunophilin; Rotamase;)
genome : 45,585,401 - 45,603,670 (18,270)
query : 1 - 686 (686/686)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 5.2.1.8
InterPro :
IPR001179 : Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain
IPR023566 : Peptidyl-prolyl cis-trans isomerase, FKBP-type
GO :
0006457 : Biological Process : protein folding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, mito 12, cyto_nucl 10.5, nucl 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011622)
HIX0011622
HIT000099824
(
BT006904
)
(Peptidyl-prolyl cis-trans isomerase FKBP3; PPIase FKBP3; EC=5.2.1.8; 25 kDa FK506-binding protein; 25 kDa FKBP; FKBP-25; FK506-binding protein 3; FKBP-3; Immunophilin FKBP25; Rapamycin-selective 25 kDa immunophilin; Rotamase;)
genome : 45,585,403 - 45,603,659 (18,257)
query : 1 - 673 (673/675)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.997
EC number :
EC 5.2.1.8
InterPro :
IPR001179 : Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain
IPR023566 : Peptidyl-prolyl cis-trans isomerase, FKBP-type
GO :
0006457 : Biological Process : protein folding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, mito 12, cyto_nucl 10.5, nucl 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011622)
HIX0011622
HIT000670623 (
ENST00000557324
)
(Peptidyl-prolyl cis-trans isomerase FKBP3; PPIase FKBP3; EC=5.2.1.8; 25 kDa FK506-binding protein; 25 kDa FKBP; FKBP-25; FK506-binding protein 3; FKBP-3; Immunophilin FKBP25; Rapamycin-selective 25 kDa immunophilin; Rotamase;)
genome : 45,590,113 - 45,603,686 (13,574)
query : 1 - 643 (643/643)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 5.2.1.8
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 12, extr 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011622)
HIX0011622
HIT000669555 (
ENST00000556231
)
(Peptidyl-prolyl cis-trans isomerase FKBP3; PPIase FKBP3; EC=5.2.1.8; 25 kDa FK506-binding protein; 25 kDa FKBP; FKBP-25; FK506-binding protein 3; FKBP-3; Immunophilin FKBP25; Rapamycin-selective 25 kDa immunophilin; Rotamase;)
genome : 45,590,791 - 45,600,464 (9,674)
query : 1 - 704 (704/704)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 5.2.1.8
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 10.5, mito 8, extr 4,
E.R._mito 4, mito_pero 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011622)
HIX0220954
HIT000051604
(
BC036056
)
(DEAD/DEAH box helicase domain containing protein.)
genome : 45,605,142 - 45,636,395 (31,254)
query : 2 - 2,125 (2,124/2,140)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001650 : Helicase, C-terminal
IPR011545 : DEAD/DEAH box helicase domain
IPR014001 : Helicase superfamily 1/2, ATP-binding domain
GO :
0003676 : Molecular Function : nucleic acid binding
0004386 : Molecular Function : helicase activity
0005524 : Molecular Function : ATP binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17.5, cyto_nucl 13.5, cyto 8.5, mito 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220954)
HIX0220954
HIT000018289
(
AK093422
)
Representative transcript
(DEAD/DEAH box helicase domain containing protein.)
genome : 45,605,143 - 45,636,626 (31,484)
query : 1 - 2,354 (2,354/2,354)
11 exons
identity = 1.000
5'(0.998;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001650 : Helicase, C-terminal
IPR011545 : DEAD/DEAH box helicase domain
IPR014001 : Helicase superfamily 1/2, ATP-binding domain
GO :
0003676 : Molecular Function : nucleic acid binding
0004386 : Molecular Function : helicase activity
0005524 : Molecular Function : ATP binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17.5, cyto_nucl 13.5, cyto 8.5, mito 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220954)
HIX0220954
HIT000669371 (
ENST00000556036
)
(DEAD/DEAH box helicase domain containing protein.)
genome : 45,605,143 - 45,636,626 (31,484)
query : 1 - 2,354 (2,354/2,354)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17.5, cyto_nucl 13.5, cyto 8.5, mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220954)
HIX0220954
HIT000667398 (
ENST00000554030
)
(DEAD/DEAH box helicase domain containing protein.)
genome : 45,605,717 - 45,607,162 (1,446)
query : 1 - 917 (917/917)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 19, cyto 9, nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220954)
HIX0220916
HIT000001311
(
AB046816
)
(Fanconi anemia group M protein; Protein FACM; EC=3.6.4.13; ATP-dependent RNA helicase FANCM; Fanconi anemia-associated polypeptide of 250 kDa; FAAP250; Protein Hef ortholog;)
genome : 45,644,336 - 45,670,087 (25,752)
query : 1 - 4,696 (4,696/4,696)
10 exons
identity = 0.989
5'(0.973;1.000;0.986;1.000;1.000;1.000;1.000;
0.997;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.6.4.13
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, cyto 11
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220916)
HIX0220916
HIT000004146
(
AK001672
)
Representative transcript
(Fanconi anemia group M protein; Protein FACM; EC=3.6.4.13; ATP-dependent RNA helicase FANCM; Fanconi anemia-associated polypeptide of 250 kDa; FAAP250; Protein Hef ortholog;)
genome : 45,645,161 - 45,669,274 (24,114)
query : 1 - 3,112 (3,112/3,116)
11 exons
identity = 0.999
5'(0.999;1.000;1.000;1.000;1.000;1.000;0.996;
1.000;1.000;1.000;1.000)3'
coverage = 0.999
EC number :
EC 3.6.4.13
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, cyto 13
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220916)
HIX0220916
HIT000668161 (
ENST00000554809
)
(ERCC4 domain containing protein.)
genome : 45,645,161 - 45,669,274 (24,114)
query : 1 - 3,112 (3,112/3,112)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 16, cyto 10.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220916)
HIX0220916
HIT000668362 (
ENST00000555013
)
(Conserved hypothetical protein.)
genome : 45,650,038 - 45,657,051 (7,014)
query : 1 - 573 (573/573)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, mito 10, cyto_nucl 10
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220916)
HIX0220916
HIT000670413 (
ENST00000557110
)
(ERCC4 domain containing protein.)
genome : 45,665,375 - 45,669,130 (3,756)
query : 1 - 638 (638/638)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, extr 11, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220916)
HIX0220916
HIT000668826 (
ENST00000555484
)
(DNA repair nuclease, XPF-type/Helicase domain containing protein.)
genome : 45,665,657 - 45,669,234 (3,578)
query : 1 - 448 (448/448)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 10, cyto 9, mito 8.5, E.R._mito 5, cyto_pero 5,
cyto_golg 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220916)
HIX0220916
HIT000666926 (
ENST00000553551
)
(DNA repair nuclease, XPF-type/Helicase domain containing protein.)
genome : 45,667,638 - 45,669,174 (1,537)
query : 1 - 603 (603/603)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20.5, cyto_nucl 14.5, nucl 5.5, extr 3, E.R. 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0220916)
HIX0011624
HIT000207165 (
NM_018353
)
(Mis18-binding protein 1; Kinetochore-associated protein KNL-2 homolog; HsKNL-2; P243;)
genome : 45,672,393 - 45,722,605 (50,213)
query : 1 - 4,777 (4,777/4,792)
17 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19.5, cyto_nucl 12, mito 6, cyto 3.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011624)
HIX0011624
HIT000261950
(
BC065544
)
Representative transcript
(Mis18-binding protein 1; Kinetochore-associated protein KNL-2 homolog; HsKNL-2; P243;)
genome : 45,672,393 - 45,722,396 (50,004)
query : 1 - 4,569 (4,569/4,584)
17 exons
identity = 1.000
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001005 : SANT/Myb domain
IPR015216 : SANT associated
IPR017884 : SANT domain
GO :
0003682 : Molecular Function : chromatin binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19.5, cyto_nucl 12, mito 6, cyto 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011624)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : BC052175
Bos
sp. (Cow) : BC123473
Danio
sp. (Zebrafish) : BC139650
Gallus
sp. (Chicken) : CR406625
Canis
sp. (Dog) : ENSCAFT00000022361
Pongo
sp. (Orangutan) : ENSPPYT00000006831
Equus
sp. (Horse) : XM_001915330
Pan
sp. (Chimpanzee) : XM_522841
Rattus
sp. (Rat) : XR_009346
Macaca
sp. (Macaque) : XR_011880
HIX0011624
HIT000118830 (
ENST00000310806
)
(Mis18-binding protein 1; Kinetochore-associated protein KNL-2 homolog; HsKNL-2; P243;)
genome : 45,672,393 - 45,722,605 (50,213)
query : 1 - 4,777 (4,777/4,777)
17 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19.5, cyto_nucl 12, mito 6, cyto 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011624)
HIX0011624
HIT000001618
(
AB067490
)
(Mis18-binding protein 1.)
genome : 45,672,790 - 45,722,605 (49,816)
query : 1 - 4,382 (4,382/4,382)
17 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.994;1.000;1.000;1.000;1.000;
1.000;0.998;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19.5, cyto_nucl 12, mito 6, cyto 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011624)
HIX0011624
HIT000574897 (
ENST00000470424
)
(Mis18-binding protein 1.)
genome : 45,673,040 - 45,675,647 (2,608)
query : 1 - 793 (793/793)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011624)
HIX0011624
HIT000599735 (
ENST00000496413
)
(Mis18-binding protein 1.)
genome : 45,673,583 - 45,675,477 (1,895)
query : 1 - 266 (266/266)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17.5, cyto_nucl 11, extr 8, cyto 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011624)
HIX0011624
HIT000573558 (
ENST00000469020
)
(Mis18-binding protein 1.)
genome : 45,679,325 - 45,693,248 (13,924)
query : 1 - 869 (869/880)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 13, nucl 8.5, extr 3, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011624)
HIX0011624
HIT000667459 (
ENST00000554093
)
(Mis18-binding protein 1.)
genome : 45,679,666 - 45,693,327 (13,662)
query : 1 - 585 (585/585)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, mito 9, cyto 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011624)
HIX0011624
HIT000245496
(
AJ242977
)
(Mis18-binding protein 1.)
genome : 45,693,514 - 45,700,373 (6,860)
query : 1 - 712 (712/715)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 0.996
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, nucl 7, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011624)
HIX0011624
HIT000053732
(
BC051885
)
(Mis18-binding protein 1.)
genome : 45,696,865 - 45,722,382 (25,518)
query : 1 - 1,983 (1,983/2,008)
9 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;0.998;1.000;
1.000;1.000)5'
coverage = 0.994
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 13, cyto 9, nucl 3, pero 3, extr 2, golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011624)
HIX0011624
HIT000004522
(
AK002048
)
(Mis18-binding protein 1.)
genome : 45,696,865 - 45,722,401 (25,537)
query : 1 - 2,120 (2,120/2,130)
10 exons
identity = 0.999
3'(1.000;1.000;1.000;0.989;1.000;0.986;1.000;
1.000;0.998;1.000)5'
coverage = 0.995
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, mito 7, cyto 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011624)
HIX0011624
HIT000552924 (
ENST00000454990
)
(Mis18-binding protein 1.)
genome : 45,696,865 - 45,722,401 (25,537)
query : 1 - 2,121 (2,121/2,131)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 0.995
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, cyto_nucl 12, cyto 9.5, mito 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011624)
HIX0011624
HIT000668992 (
ENST00000555653
)
(Mis18-binding protein 1.)
genome : 45,696,890 - 45,700,644 (3,755)
query : 1 - 429 (429/429)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto 14
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011624)
HIX0011624
HIT000551076 (
ENST00000453142
)
(Mis18-binding protein 1.)
genome : 45,700,344 - 45,711,683 (11,340)
query : 1 - 886 (886/898)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.987
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, cyto_nucl 13, nucl 7, mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011624)
HIX0011624
HIT000597908 (
ENST00000494512
)
(Non-protein coding transcript.)
genome : 45,706,900 - 45,722,743 (15,844)
query : 1 - 531 (531/531)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011624)
HIX0011624
HIT000596128 (
ENST00000492652
)
(Mis18-binding protein 1.)
genome : 45,710,671 - 45,711,589 (919)
query : 1 - 756 (756/756)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 15, cyto 11.5, cysk 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011624)
HIX0011624
HIT000549108 (
ENST00000451174
)
(Mis18-binding protein 1.)
genome : 45,716,024 - 45,722,380 (6,357)
query : 1 - 808 (808/808)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14, cyto 6, nucl 4, cyto_golg 4, extr 3, pero 3,
cyto_plas 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011624)
HIX0221564
HIT000668432_02 (
ENST00000555084
)
(DnaJ domain containing protein.)
genome : 45,759,239 - 45,759,589 (351)
query : 1 - 351 (351/351)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, mito 6, E.R. 3, mito_nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0221564)
HIX0037870
HIT000087974
(
BC012943
)
Representative transcript
(Hypothetical short protein.)
genome : 45,838,418 - 45,840,042 (1,625)
query : 1 - 1,625 (1,625/1,641)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto 10, mito 2, golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037870)
HIX0037870
HIT000679999 (
ENST00000566976
)
(Hypothetical short protein.)
genome : 45,838,418 - 45,840,042 (1,625)
query : 1 - 1,625 (1,625/1,625)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto 10, mito 2, golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0037870)
HIX0221335
HIT000660995 (
ENST00000546784
)
(Conserved hypothetical protein.)
genome : 45,846,471 - 45,858,489 (12,019)
query : 1 - 548 (548/548)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25.5, cyto_nucl 15.5, cyto 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0221335)
HIX0221452
HIT000667303 (
ENST00000553933
)
(Rho GTPase-activating protein domain containing protein.)
genome : 45,971,945 - 45,972,343 (399)
query : 1 - 399 (399/399)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, mito 13
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0221452)
HIX0221493
HIT000667685 (
ENST00000554319
)
(Hypothetical short protein.)
genome : 46,037,198 - 46,038,272 (1,075)
query : 1 - 645 (645/645)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 17, extr 11.5, extr_plas 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0221493)
HIX0221216
HIT000670898 (
ENST00000557602
)
(Conserved hypothetical protein.)
genome : 46,175,453 - 46,183,656 (8,204)
query : 1 - 486 (486/486)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, cyto_nucl 7.5, nucl 6, cyto 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0221216)
HIX0221216
HIT000668162 (
ENST00000554810
)
(Hypothetical short protein.)
genome : 46,175,461 - 46,184,894 (9,434)
query : 1 - 587 (587/587)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, extr 8, mito_pero 8, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0221216)
HIX0221216
HIT000668067 (
ENST00000554711
)
(Conserved hypothetical protein.)
genome : 46,175,461 - 46,184,690 (9,230)
query : 1 - 531 (531/531)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, extr 8, mito_pero 8, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0221216)
HIX0221216
HIT000667795 (
ENST00000554431
)
(Conserved hypothetical protein.)
genome : 46,175,463 - 46,183,623 (8,161)
query : 1 - 435 (435/435)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, cyto 11
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0221216)
HIX0221216
HIT000668784 (
ENST00000555442
)
(Hypothetical short protein.)
genome : 46,175,475 - 46,185,155 (9,681)
query : 1 - 889 (889/889)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, extr 8, mito_pero 8, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0221216)
HIX0221230
HIT000668594 (
ENST00000555246
)
(Hypothetical short protein.)
genome : 46,410,146 - 46,916,578 (506,433)
query : 1 - 408 (408/408)
6 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, cyto_nucl 9, nucl 7.5, cyto 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0221230)
HIX0221230
HIT000727836 (
NR_102701
)
(Conserved hypothetical protein.)
genome : 46,533,362 - 46,971,106 (437,745)
query : 1 - 946 (946/946)
6 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 11.5, extr 11
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0221230)
HIX0221230
HIT000727837 (
NR_102702
)
(Conserved hypothetical protein.)
genome : 46,533,362 - 46,971,106 (437,745)
query : 1 - 829 (829/829)
4 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, nucl 9, mito 7
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0221230)
HIX0221230
HIT000670194 (
ENST00000556886
)
(Hypothetical short protein.)
genome : 46,533,362 - 46,971,026 (437,665)
query : 1 - 866 (866/866)
6 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 11.5, extr 11
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0221230)
HIX0011621
HIT000206780 (
NM_017922
)
(Pre-mRNA-processing factor 39; PRP39 homolog;)
genome : 45,553,302 - 45,584,803 (31,502)
query : 1 - 2,867 (2,867/2,894)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, cyto_nucl 13.3333, cyto_mito 10.8333,
nucl 5.5, pero 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011621)
HIX0011621
HIT000309860 (
ENST00000355765
)
(Pre-mRNA-processing factor 39; PRP39 homolog;)
genome : 45,553,302 - 45,584,804 (31,503)
query : 1 - 2,868 (2,868/2,868)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, cyto_nucl 13.3333, cyto_mito 10.8333,
nucl 5.5, pero 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011621)
HIX0011621
HIT000666979 (
ENST00000553605
)
(Pre-mRNA-processing factor 39.)
genome : 45,553,310 - 45,565,431 (12,122)
query : 1 - 582 (582/582)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, nucl 8, cyto_mito 8, cyto_plas 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011621)
HIX0011621
HIT000091643
(
BC028683
)
(Pre-mRNA-processing factor 39.)
genome : 45,553,321 - 45,584,803 (31,483)
query : 1 - 3,501 (3,501/3,516)
13 exons
identity = 0.997
5'(0.985;0.997;0.999;1.000;0.994;1.000;1.000;
1.000;0.996;1.000;1.000;1.000;0.993)3'
coverage = 1.000
InterPro :
IPR003107 : HAT (Half-A-TPR) repeat
IPR011990 : Tetratricopeptide-like helical domain
GO :
0005515 : Molecular Function : protein binding
0005622 : Cellular Component : intracellular
0006396 : Biological Process : RNA processing
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, mito 6, nucl 2, pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011621)
HIX0011621
HIT000581763 (
ENST00000477626
)
(Pre-mRNA-processing factor 39.)
genome : 45,553,321 - 45,584,804 (31,484)
query : 1 - 3,507 (3,507/3,507)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
pero 11, cyto 10, mito 7, plas 3.5, E.R._mito 3.5,
mito_nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011621)
HIX0011621
HIT000427281
(
AK308415
)
(Pre-mRNA-processing factor 39.)
genome : 45,553,324 - 45,566,051 (12,728)
query : 1 - 1,219 (1,219/1,219)
3 exons
identity = 0.998
5'(1.000;1.000;0.997)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, cyto_nucl 15, nucl 10, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011621)
HIX0011621
HIT000003148
(
AK000673
)
(Pre-mRNA-processing factor 39.)
genome : 45,553,331 - 45,584,803 (31,473)
query : 2 - 3,176 (3,175/3,192)
15 exons
identity = 0.996
5'(0.992;0.997;1.000;1.000;0.992;0.988;1.000;
1.000;0.988;1.000;0.996;0.995;1.000;1.000;
0.993)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23.5, cyto_nucl 16, nucl 3.5, cysk 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011621)
HIX0011621
HIT000426396
(
AK307530
)
(Pre-mRNA-processing factor 39.)
genome : 45,553,330 - 45,583,440 (30,111)
query : 1 - 1,954 (1,954/1,954)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR003107 : HAT (Half-A-TPR) repeat
IPR011990 : Tetratricopeptide-like helical domain
GO :
0005515 : Molecular Function : protein binding
0005622 : Cellular Component : intracellular
0006396 : Biological Process : RNA processing
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, cyto_nucl 13.3333, cyto_mito 9.83333,
nucl 7.5, pero 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011621)
HIX0011621
HIT000522412 (
ENST00000424478
)
(Pre-mRNA-processing factor 39; PRP39 homolog;)
genome : 45,553,331 - 45,584,804 (31,474)
query : 1 - 3,174 (3,174/3,174)
15 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14.5, cyto 14, nucl 13, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011621)
HIX0011621
HIT000388579
(
BC125126
)
Representative transcript
(Pre-mRNA-processing factor 39; PRP39 homolog;)
genome : 45,553,399 - 45,584,665 (31,267)
query : 1 - 2,631 (2,631/2,631)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR003107 : HAT (Half-A-TPR) repeat
IPR011990 : Tetratricopeptide-like helical domain
GO :
0005515 : Molecular Function : protein binding
0005622 : Cellular Component : intracellular
0006396 : Biological Process : RNA processing
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, cyto_nucl 13.3333, cyto_mito 10.8333,
nucl 5.5, pero 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011621)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : BC034078
Danio
sp. (Zebrafish) : BC116540
Bos
sp. (Cow) : BC149776
Monodelphis
sp. (Opossum) : ENSMODT00000009354
Oryzias
sp. (Medaka) : ENSORLT00000003421
Oryzias
sp. (Medaka) : ENSORLT00000018919
Pongo
sp. (Orangutan) : ENSPPYT00000006825
Takifugu
sp. (Fugu) : SINFRUT00000144596
Pan
sp. (Chimpanzee) : XM_001150946
Equus
sp. (Horse) : XM_001493445
Canis
sp. (Dog) : XM_858062
Macaca
sp. (Macaque) : XR_011740
HIX0011621
HIT000388580
(
BC125127
)
(Pre-mRNA-processing factor 39; PRP39 homolog;)
genome : 45,553,399 - 45,584,661 (31,263)
query : 1 - 2,628 (2,628/2,632)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.991;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.998
InterPro :
IPR003107 : HAT (Half-A-TPR) repeat
IPR011990 : Tetratricopeptide-like helical domain
GO :
0005515 : Molecular Function : protein binding
0005622 : Cellular Component : intracellular
0006396 : Biological Process : RNA processing
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, cyto_nucl 13.3333, cyto_mito 10.8333,
nucl 5.5, pero 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011621)
HIX0011621
HIT000667803 (
ENST00000554439
)
(Pre-mRNA-processing factor 39; PRP39 homolog;)
genome : 45,564,424 - 45,584,837 (20,414)
query : 1 - 2,982 (2,982/2,982)
15 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14.5, cyto 14, nucl 13, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011621)
HIX0011621
HIT000667793 (
ENST00000554429
)
(Pre-mRNA-processing factor 39.)
genome : 45,564,442 - 45,584,804 (20,363)
query : 1 - 2,977 (2,977/2,977)
16 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14.5, cyto 14, nucl 13, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011621)
HIX0011621
HIT000669675 (
ENST00000556353
)
(Pre-mRNA-processing factor 39.)
genome : 45,564,649 - 45,566,069 (1,421)
query : 1 - 687 (687/687)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 10, extr 7, mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011621)
HIX0011621
HIT000667447 (
ENST00000554081
)
(Pre-mRNA-processing factor 39.)
genome : 45,565,401 - 45,585,485 (20,085)
query : 1 - 3,223 (3,223/3,223)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 26, nucl 2, cyto 2, cyto_nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011621)
HIX0011623
HIT000341938
(
DQ140356
)
Representative transcript
(Fanconi anemia group M protein; Protein FACM; EC=3.6.4.13; ATP-dependent RNA helicase FANCM; Fanconi anemia-associated polypeptide of 250 kDa; FAAP250; Protein Hef ortholog;)
genome : 45,605,150 - 45,670,088 (64,939)
query : 16 - 7,124 (7,109/7,143)
23 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 0.998
EC number :
EC 3.6.4.13
InterPro :
IPR001650 : Helicase, C-terminal
IPR006166 : ERCC4 domain
IPR010994 : RuvA domain 2-like
IPR011335 : Restriction endonuclease type II-like
IPR011545 : DEAD/DEAH box helicase domain
IPR014001 : Helicase superfamily 1/2, ATP-binding domain
IPR020819 : DNA repair nuclease, XPF-type/Helicase
GO :
0003676 : Molecular Function : nucleic acid binding
0003677 : Molecular Function : DNA binding
0004386 : Molecular Function : helicase activity
0004518 : Molecular Function : nuclease activity
0005524 : Molecular Function : ATP binding
0006259 : Biological Process : DNA metabolic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22.5, cyto_nucl 14, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011623)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK173211
Rattus
sp. (Rat) : BC091339
Bos
sp. (Cow) : BC149286
Gallus
sp. (Chicken) : CR391685
Canis
sp. (Dog) : ENSCAFT00000022327
Monodelphis
sp. (Opossum) : ENSMODT00000034083
Oryzias
sp. (Medaka) : ENSORLT00000018175
Pongo
sp. (Orangutan) : ENSPPYT00000006830
Tetraodon
sp. (Tetraodon) : GSTENT00032103001
Takifugu
sp. (Fugu) : SINFRUT00000161847
Macaca
sp. (Macaque) : XM_001096802
Equus
sp. (Horse) : XM_001915850
Pan
sp. (Chimpanzee) : XM_509928
HIX0011623
HIT000366896 (
NM_020937
)
(Fanconi anemia group M protein; Protein FACM; EC=3.6.4.13; ATP-dependent RNA helicase FANCM; Fanconi anemia-associated polypeptide of 250 kDa; FAAP250; Protein Hef ortholog;)
genome : 45,605,136 - 45,670,093 (64,958)
query : 1 - 7,128 (7,128/7,144)
23 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.6.4.13
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22.5, cyto_nucl 14, mito 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011623)
HIX0011623
HIT000110157 (
ENST00000267430
)
(Fanconi anemia group M protein; Protein FACM; EC=3.6.4.13; ATP-dependent RNA helicase FANCM; Fanconi anemia-associated polypeptide of 250 kDa; FAAP250; Protein Hef ortholog;)
genome : 45,605,150 - 45,670,090 (64,941)
query : 1 - 7,111 (7,111/7,111)
23 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.6.4.13
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22.5, cyto_nucl 14, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011623)
HIX0011623
HIT000502920
(
BC144511
)
(Fanconi anemia group M protein; Protein FACM; EC=3.6.4.13; ATP-dependent RNA helicase FANCM; Fanconi anemia-associated polypeptide of 250 kDa; FAAP250; Protein Hef ortholog;)
genome : 45,605,157 - 45,669,231 (64,075)
query : 1 - 6,167 (6,167/6,167)
22 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
EC number :
EC 3.6.4.13
InterPro :
IPR001650 : Helicase, C-terminal
IPR006166 : ERCC4 domain
IPR010994 : RuvA domain 2-like
IPR011335 : Restriction endonuclease type II-like
IPR011545 : DEAD/DEAH box helicase domain
IPR014001 : Helicase superfamily 1/2, ATP-binding domain
IPR020819 : DNA repair nuclease, XPF-type/Helicase
GO :
0003676 : Molecular Function : nucleic acid binding
0003677 : Molecular Function : DNA binding
0004386 : Molecular Function : helicase activity
0004518 : Molecular Function : nuclease activity
0005524 : Molecular Function : ATP binding
0006259 : Biological Process : DNA metabolic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22.5, cyto_nucl 14, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011623)
HIX0011623
HIT000641609 (
ENST00000542564
)
(Fanconi anemia group M protein; Protein FACM; EC=3.6.4.13; ATP-dependent RNA helicase FANCM; Fanconi anemia-associated polypeptide of 250 kDa; FAAP250; Protein Hef ortholog;)
genome : 45,605,157 - 45,669,231 (64,075)
query : 1 - 6,167 (6,167/6,167)
22 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
EC number :
EC 3.6.4.13
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22.5, cyto_nucl 14, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011623)
HIX0011623
HIT000501529
(
BC140776
)
(Fanconi anemia group M protein; Protein FACM; EC=3.6.4.13; ATP-dependent RNA helicase FANCM; Fanconi anemia-associated polypeptide of 250 kDa; FAAP250; Protein Hef ortholog;)
genome : 45,605,157 - 45,669,226 (64,070)
query : 1 - 6,162 (6,162/6,162)
22 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
EC number :
EC 3.6.4.13
InterPro :
IPR001650 : Helicase, C-terminal
IPR006166 : ERCC4 domain
IPR010994 : RuvA domain 2-like
IPR011335 : Restriction endonuclease type II-like
IPR011545 : DEAD/DEAH box helicase domain
IPR014001 : Helicase superfamily 1/2, ATP-binding domain
IPR020819 : DNA repair nuclease, XPF-type/Helicase
GO :
0003676 : Molecular Function : nucleic acid binding
0003677 : Molecular Function : DNA binding
0004386 : Molecular Function : helicase activity
0004518 : Molecular Function : nuclease activity
0005524 : Molecular Function : ATP binding
0006259 : Biological Process : DNA metabolic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22.5, cyto_nucl 14, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011623)
HIX0011623
HIT000028568
(
AL833656
)
(Fanconi anemia group M protein; Protein FACM; EC=3.6.4.13; ATP-dependent RNA helicase FANCM; Fanconi anemia-associated polypeptide of 250 kDa; FAAP250; Protein Hef ortholog;)
genome : 45,623,962 - 45,670,093 (46,132)
query : 1 - 5,577 (5,577/5,593)
16 exons
identity = 0.999
5'(1.000;1.000;1.000;0.995;1.000;1.000;0.999;
1.000;0.986;1.000;1.000;1.000;1.000;0.997;
1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.6.4.13
InterPro :
IPR006166 : ERCC4 domain
IPR010994 : RuvA domain 2-like
IPR011335 : Restriction endonuclease type II-like
IPR020819 : DNA repair nuclease, XPF-type/Helicase
GO :
0003677 : Molecular Function : DNA binding
0004518 : Molecular Function : nuclease activity
0006259 : Biological Process : DNA metabolic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27.5, cyto_nucl 16
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011623)
HIX0011623
HIT000669574 (
ENST00000556250
)
(Fanconi anemia group M protein; Protein FACM; EC=3.6.4.13; ATP-dependent RNA helicase FANCM; Fanconi anemia-associated polypeptide of 250 kDa; FAAP250; Protein Hef ortholog;)
genome : 45,623,962 - 45,670,093 (46,132)
query : 1 - 5,577 (5,577/5,577)
16 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.6.4.13
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27.5, cyto_nucl 16
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0011623)
AL356022.3
45000001-45066092 F +
NCBI
AL358293.4
45066093-45255759 F +
NCBI
AL160233.3
45255760-45320154 F -
NCBI
AL049870.3
45320155-45523157 F +
NCBI
AL121809.6
45523158-45729526 F -
NCBI
AL133501.6
45729527-45822994 F -
NCBI
AL162632.4
45822995-45982410 F -
NCBI
AL139354.6
45982411-46160557 F +
NCBI
AL359398.2
46160558-46264496 F +
NCBI
AL158111.5
46264497-46363582 F +
NCBI
AL133449.5
46363583-46403176 F +
NCBI
AL133224.4
46403177-46528755 F -
NCBI
AL161664.8
46528756-46600000 F +
NCBI