bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0132558
HIT000668442 (
ENST00000555094
)
(Neurotransmitter-gated ion-channel family protein.)
genome : 26,825,478 - 27,012,383 (186,906)
query : 1 - 515 (515/515)
4 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, cyto_nucl 14.5, nucl 7, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0132558)
HIX0222101
HIT000670937 (
ENST00000557641
)
(Neurotransmitter-gated ion-channel ligand-binding domain containing protein.)
genome : 26,995,082 - 27,035,447 (40,366)
query : 1 - 828 (828/828)
4 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, mito 7.5, mito_pero 4.5, cyto 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222101)
HIX0222101
HIT000668078 (
ENST00000554722
)
(Neurotransmitter-gated ion-channel family protein.)
genome : 27,016,966 - 27,018,898 (1,933)
query : 1 - 406 (406/406)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 24, nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222101)
HIX0211906
HIT000583046 (
ENST00000478962
)
(Conserved hypothetical protein.)
genome : 27,096,279 - 27,096,757 (479)
query : 1 - 479 (479/479)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto 13.5, cyto_nucl 8, extr_plas 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0211906)
HIX0026792
HIT000129719 (
ENST00000335625
)
(Gamma-aminobutyric acid receptor subunit alpha-5; GABA(A) receptor subunit alpha-5; Precursor;)
genome : 27,111,510 - 27,194,354 (82,845)
query : 1 - 3,251 (3,251/3,251)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 14, pero 6.5, plas 6, cyto_pero 5, cyto 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026792)
HIX0026792
HIT000197822 (
NM_000810
)
(Gamma-aminobutyric acid receptor subunit alpha-5; GABA(A) receptor subunit alpha-5; Precursor;)
genome : 27,111,866 - 27,194,357 (82,492)
query : 1 - 2,898 (2,898/2,910)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 14, pero 6.5, plas 6, cyto_pero 5, cyto 2.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026792)
HIX0026792
HIT000309541 (
ENST00000355395
)
(Gamma-aminobutyric acid receptor subunit alpha-5; GABA(A) receptor subunit alpha-5; Precursor;)
genome : 27,112,058 - 27,193,899 (81,842)
query : 1 - 2,183 (2,183/2,183)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 14, pero 6.5, plas 6, cyto_pero 5, cyto 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026792)
HIX0026792
HIT000191911
(
L08485
)
Representative transcript
(Gamma-aminobutyric acid receptor subunit alpha-5; GABA(A) receptor subunit alpha-5; Precursor;)
genome : 27,112,104 - 27,194,003 (81,900)
query : 13 - 2,318 (2,306/2,318)
11 exons
identity = 0.997
5'(0.987;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.995;0.995)3'
coverage = 0.995
InterPro :
IPR001390 : Gamma-aminobutyric-acid A receptor, alpha subunit
IPR005435 : Gamma-aminobutyric-acid A receptor, alpha 5 subunit
IPR006028 : Gamma-aminobutyric acid A receptor/Glycine receptor alpha
IPR006029 : Neurotransmitter-gated ion-channel transmembrane domain
IPR006201 : Neurotransmitter-gated ion-channel
IPR006202 : Neurotransmitter-gated ion-channel ligand-binding domain
IPR018000 : Neurotransmitter-gated ion-channel, conserved site
GO :
0004890 : Molecular Function : GABA-A receptor activity
0005216 : Molecular Function : ion channel activity
0005230 : Molecular Function : extracellular ligand-gated ion channel activity
0006810 : Biological Process : transport
0006811 : Biological Process : ion transport
0006821 : Biological Process : chloride transport
0007214 : Biological Process : gamma-aminobutyric acid signaling pathway
0016020 : Cellular Component : membrane
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 14, pero 6.5, plas 6, cyto_pero 5, cyto 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026792)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK038476
Macaca
sp. (Macaque) : AY644395
Bos
sp. (Cow) : BC123418
Tetraodon
sp. (Tetraodon) : CR701526
Equus
sp. (Horse) : ENSECAT00000006855
Oryzias
sp. (Medaka) : ENSORLT00000005678
Oryzias
sp. (Medaka) : ENSORLT00000019879
Pongo
sp. (Orangutan) : ENSPPYT00000007408
Tetraodon
sp. (Tetraodon) : GSTENT00026918001
Takifugu
sp. (Fugu) : SINFRUT00000135270
Rattus
sp. (Rat) : X51992
Danio
sp. (Zebrafish) : XM_001339475
Monodelphis
sp. (Opossum) : XM_001362857
Gallus
sp. (Chicken) : XM_416880
Canis
sp. (Dog) : XM_545805
Pan
sp. (Chimpanzee) : XR_022363
HIX0026792
HIT000423250
(
AK290453
)
(Gamma-aminobutyric acid receptor subunit alpha-5; GABA(A) receptor subunit alpha-5; Precursor;)
genome : 27,112,203 - 27,193,672 (81,470)
query : 1 - 1,876 (1,876/1,876)
11 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.995;1.000)3'
coverage = 1.000
InterPro :
IPR001390 : Gamma-aminobutyric-acid A receptor, alpha subunit
IPR005435 : Gamma-aminobutyric-acid A receptor, alpha 5 subunit
IPR006028 : Gamma-aminobutyric acid A receptor/Glycine receptor alpha
IPR006029 : Neurotransmitter-gated ion-channel transmembrane domain
IPR006201 : Neurotransmitter-gated ion-channel
IPR006202 : Neurotransmitter-gated ion-channel ligand-binding domain
IPR018000 : Neurotransmitter-gated ion-channel, conserved site
GO :
0004890 : Molecular Function : GABA-A receptor activity
0005216 : Molecular Function : ion channel activity
0005230 : Molecular Function : extracellular ligand-gated ion channel activity
0006810 : Biological Process : transport
0006811 : Biological Process : ion transport
0006821 : Biological Process : chloride transport
0007214 : Biological Process : gamma-aminobutyric acid signaling pathway
0016020 : Cellular Component : membrane
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 14, pero 6.5, plas 6, cyto_pero 5, cyto 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026792)
HIX0026792
HIT000668530 (
ENST00000555182
)
(Gamma-aminobutyric acid receptor subunit alpha-5; GABA(A) receptor subunit alpha-5; Precursor;)
genome : 27,112,219 - 27,160,032 (47,814)
query : 1 - 534 (534/549)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.973
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 17, cyto 7.5, cyto_nucl 7.5, nucl 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026792)
HIX0026792
HIT000670781 (
ENST00000557484
)
(Gamma-aminobutyric acid receptor subunit alpha-5; GABA(A) receptor subunit alpha-5; Precursor;)
genome : 27,112,267 - 27,114,481 (2,215)
query : 1 - 490 (490/506)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 0.968
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026792)
HIX0026792
HIT000654154 (
NM_001165037
)
(Gamma-aminobutyric acid receptor subunit alpha-5; GABA(A) receptor subunit alpha-5; Precursor;)
genome : 27,112,273 - 27,194,357 (82,085)
query : 1 - 2,764 (2,764/2,776)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 14, pero 6.5, plas 6, cyto_pero 5, cyto 2.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026792)
HIX0026792
HIT000483079 (
ENST00000400081
)
(Gamma-aminobutyric acid receptor subunit alpha-5; GABA(A) receptor subunit alpha-5; Precursor;)
genome : 27,112,273 - 27,194,354 (82,082)
query : 1 - 2,761 (2,761/2,761)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 14, pero 6.5, plas 6, cyto_pero 5, cyto 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026792)
HIX0026792
HIT000667406 (
ENST00000554038
)
(Gamma-aminobutyric acid receptor subunit alpha-5; GABA(A) receptor subunit alpha-5; Precursor;)
genome : 27,112,310 - 27,128,362 (16,053)
query : 1 - 653 (653/653)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, mito 3, cyto_nucl 3, nucl 2, cyto 2,
mito_pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026792)
HIX0026792
HIT000667956 (
ENST00000554596
)
(Gamma-aminobutyric acid receptor subunit alpha-5; GABA(A) receptor subunit alpha-5; Precursor;)
genome : 27,112,389 - 27,128,653 (16,265)
query : 1 - 728 (728/728)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, mito 4, cyto 3.5, cyto_nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026792)
HIX0026792
HIT000670746 (
ENST00000557449
)
(Gamma-aminobutyric acid receptor subunit alpha-5; GABA(A) receptor subunit alpha-5; Precursor;)
genome : 27,112,392 - 27,159,997 (47,606)
query : 1 - 569 (569/569)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, mito 3, cyto_nucl 3, nucl 2, cyto 2,
mito_pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026792)
HIX0026792
HIT000668408 (
ENST00000555060
)
(Non-protein coding transcript.)
genome : 27,112,976 - 27,114,443 (1,468)
query : 1 - 458 (458/458)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026792)
HIX0026792
HIT000667959 (
ENST00000554599
)
(Gamma-aminobutyric acid receptor subunit alpha-5; GABA(A) receptor subunit alpha-5; Precursor;)
genome : 27,113,862 - 27,128,704 (14,843)
query : 1 - 650 (650/653)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.995
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, cyto_nucl 5.5, nucl 4.5, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026792)
HIX0026792
HIT000035243
(
BC011403
)
(Gamma-aminobutyric acid receptor subunit alpha-5; GABA(A) receptor subunit alpha-5; Precursor;)
genome : 27,113,875 - 27,194,349 (80,475)
query : 8 - 2,505 (2,498/2,525)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.993;
1.000;1.000;1.000)3'
coverage = 0.995
InterPro :
IPR001390 : Gamma-aminobutyric-acid A receptor, alpha subunit
IPR005435 : Gamma-aminobutyric-acid A receptor, alpha 5 subunit
IPR006028 : Gamma-aminobutyric acid A receptor/Glycine receptor alpha
IPR006029 : Neurotransmitter-gated ion-channel transmembrane domain
IPR006201 : Neurotransmitter-gated ion-channel
IPR006202 : Neurotransmitter-gated ion-channel ligand-binding domain
IPR018000 : Neurotransmitter-gated ion-channel, conserved site
GO :
0004890 : Molecular Function : GABA-A receptor activity
0005216 : Molecular Function : ion channel activity
0005230 : Molecular Function : extracellular ligand-gated ion channel activity
0006810 : Biological Process : transport
0006811 : Biological Process : ion transport
0006821 : Biological Process : chloride transport
0007214 : Biological Process : gamma-aminobutyric acid signaling pathway
0016020 : Cellular Component : membrane
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 14, pero 6.5, plas 6, cyto_pero 5, cyto 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026792)
HIX0026792
HIT000386875
(
BC113422
)
(Gamma-aminobutyric acid receptor subunit alpha-5; GABA(A) receptor subunit alpha-5; Precursor;)
genome : 27,113,874 - 27,193,410 (79,537)
query : 4 - 1,563 (1,560/1,563)
10 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.993;
1.000;1.000;1.000)3'
coverage = 0.998
InterPro :
IPR001390 : Gamma-aminobutyric-acid A receptor, alpha subunit
IPR005435 : Gamma-aminobutyric-acid A receptor, alpha 5 subunit
IPR006028 : Gamma-aminobutyric acid A receptor/Glycine receptor alpha
IPR006029 : Neurotransmitter-gated ion-channel transmembrane domain
IPR006201 : Neurotransmitter-gated ion-channel
IPR006202 : Neurotransmitter-gated ion-channel ligand-binding domain
IPR018000 : Neurotransmitter-gated ion-channel, conserved site
GO :
0004890 : Molecular Function : GABA-A receptor activity
0005216 : Molecular Function : ion channel activity
0005230 : Molecular Function : extracellular ligand-gated ion channel activity
0006810 : Biological Process : transport
0006811 : Biological Process : ion transport
0006821 : Biological Process : chloride transport
0007214 : Biological Process : gamma-aminobutyric acid signaling pathway
0016020 : Cellular Component : membrane
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 14, pero 6.5, plas 6, cyto_pero 5, cyto 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026792)
HIX0026792
HIT000340108
(
BC111979
)
(Gamma-aminobutyric acid receptor subunit alpha-5; GABA(A) receptor subunit alpha-5; Precursor;)
genome : 27,113,874 - 27,193,403 (79,530)
query : 4 - 1,556 (1,553/1,556)
10 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.995;1.000)3'
coverage = 0.998
InterPro :
IPR001390 : Gamma-aminobutyric-acid A receptor, alpha subunit
IPR005435 : Gamma-aminobutyric-acid A receptor, alpha 5 subunit
IPR006028 : Gamma-aminobutyric acid A receptor/Glycine receptor alpha
IPR006029 : Neurotransmitter-gated ion-channel transmembrane domain
IPR006201 : Neurotransmitter-gated ion-channel
IPR006202 : Neurotransmitter-gated ion-channel ligand-binding domain
IPR018000 : Neurotransmitter-gated ion-channel, conserved site
GO :
0004890 : Molecular Function : GABA-A receptor activity
0005216 : Molecular Function : ion channel activity
0005230 : Molecular Function : extracellular ligand-gated ion channel activity
0006810 : Biological Process : transport
0006811 : Biological Process : ion transport
0006821 : Biological Process : chloride transport
0007214 : Biological Process : gamma-aminobutyric acid signaling pathway
0016020 : Cellular Component : membrane
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 14, pero 6.5, plas 6, cyto_pero 5, cyto 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026792)
HIX0026792
HIT000266392
(
BT009830
)
(Gamma-aminobutyric acid receptor subunit alpha-5; GABA(A) receptor subunit alpha-5; Precursor;)
genome : 27,114,396 - 27,193,379 (78,984)
query : 1 - 1,388 (1,388/1,389)
9 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;0.993;1.000;
1.000;1.000)3'
coverage = 0.999
InterPro :
IPR001390 : Gamma-aminobutyric-acid A receptor, alpha subunit
IPR005435 : Gamma-aminobutyric-acid A receptor, alpha 5 subunit
IPR006028 : Gamma-aminobutyric acid A receptor/Glycine receptor alpha
IPR006029 : Neurotransmitter-gated ion-channel transmembrane domain
IPR006201 : Neurotransmitter-gated ion-channel
IPR006202 : Neurotransmitter-gated ion-channel ligand-binding domain
IPR018000 : Neurotransmitter-gated ion-channel, conserved site
GO :
0004890 : Molecular Function : GABA-A receptor activity
0005216 : Molecular Function : ion channel activity
0005230 : Molecular Function : extracellular ligand-gated ion channel activity
0006810 : Biological Process : transport
0006811 : Biological Process : ion transport
0006821 : Biological Process : chloride transport
0007214 : Biological Process : gamma-aminobutyric acid signaling pathway
0016020 : Cellular Component : membrane
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 14, pero 6.5, plas 6, cyto_pero 5, cyto 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026792)
HIX0026792
HIT000667449 (
ENST00000554083
)
(Gamma-aminobutyric acid receptor subunit alpha-5; GABA(A) receptor subunit alpha-5; Precursor;)
genome : 27,125,690 - 27,128,560 (2,871)
query : 1 - 570 (570/570)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 22, extr 4, cyto_nucl 4, nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026792)
HIX0026792
HIT000488927
(
AK294303
)
(Gamma-aminobutyric acid receptor subunit alpha-5; GABA(A) receptor subunit alpha-5; Precursor;)
genome : 27,126,052 - 27,193,899 (67,848)
query : 1 - 1,763 (1,763/1,763)
8 exons
identity = 0.998
5'(1.000;1.000;1.000;0.988;0.986;1.000;0.995;
1.000)3'
coverage = 1.000
InterPro :
IPR001390 : Gamma-aminobutyric-acid A receptor, alpha subunit
IPR005435 : Gamma-aminobutyric-acid A receptor, alpha 5 subunit
IPR006028 : Gamma-aminobutyric acid A receptor/Glycine receptor alpha
IPR006029 : Neurotransmitter-gated ion-channel transmembrane domain
IPR006201 : Neurotransmitter-gated ion-channel
IPR006202 : Neurotransmitter-gated ion-channel ligand-binding domain
GO :
0004890 : Molecular Function : GABA-A receptor activity
0005216 : Molecular Function : ion channel activity
0005230 : Molecular Function : extracellular ligand-gated ion channel activity
0006810 : Biological Process : transport
0006811 : Biological Process : ion transport
0006821 : Biological Process : chloride transport
0007214 : Biological Process : gamma-aminobutyric acid signaling pathway
0016020 : Cellular Component : membrane
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 13, cyto_nucl 9.83333, cyto_mito 8.33333,
nucl 5.5, pero 5, plas 4.5, extr_plas 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026792)
HIX0026792
HIT000498366
(
AK303742
)
(Gamma-aminobutyric acid receptor subunit alpha-5; GABA(A) receptor subunit alpha-5; Precursor;)
genome : 27,128,505 - 27,193,846 (65,342)
query : 1 - 1,558 (1,558/1,558)
6 exons
identity = 0.999
5'(1.000;1.000;0.993;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001390 : Gamma-aminobutyric-acid A receptor, alpha subunit
IPR005435 : Gamma-aminobutyric-acid A receptor, alpha 5 subunit
IPR006028 : Gamma-aminobutyric acid A receptor/Glycine receptor alpha
IPR006029 : Neurotransmitter-gated ion-channel transmembrane domain
IPR006201 : Neurotransmitter-gated ion-channel
IPR006202 : Neurotransmitter-gated ion-channel ligand-binding domain
IPR018000 : Neurotransmitter-gated ion-channel, conserved site
GO :
0004890 : Molecular Function : GABA-A receptor activity
0005216 : Molecular Function : ion channel activity
0005230 : Molecular Function : extracellular ligand-gated ion channel activity
0006810 : Biological Process : transport
0006811 : Biological Process : ion transport
0006821 : Biological Process : chloride transport
0007214 : Biological Process : gamma-aminobutyric acid signaling pathway
0016020 : Cellular Component : membrane
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 10, mito 9, cyto 6, pero 6, cyto_pero 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026792)
HIX0026792
HIT000046764
(
AK126891
)
(Gamma-aminobutyric acid receptor subunit alpha-5; GABA(A) receptor subunit alpha-5; Precursor;)
genome : 27,189,908 - 27,194,325 (4,418)
query : 1 - 4,419 (4,419/4,419)
1 exon
identity = 0.998
5'(0.998)3'
coverage = 1.000
InterPro :
IPR001390 : Gamma-aminobutyric-acid A receptor, alpha subunit
IPR005435 : Gamma-aminobutyric-acid A receptor, alpha 5 subunit
IPR006029 : Neurotransmitter-gated ion-channel transmembrane domain
IPR006201 : Neurotransmitter-gated ion-channel
GO :
0004890 : Molecular Function : GABA-A receptor activity
0005216 : Molecular Function : ion channel activity
0006811 : Biological Process : ion transport
0006821 : Biological Process : chloride transport
0007214 : Biological Process : gamma-aminobutyric acid signaling pathway
0016020 : Cellular Component : membrane
0016021 : Cellular Component : integral component of membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, mito 9, cyto_nucl 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026792)
HIX0026792
HIT000044546
(
AK124673
)
(Gamma-aminobutyric acid receptor subunit alpha-5; GABA(A) receptor subunit alpha-5; Precursor;)
genome : 27,191,908 - 27,194,345 (2,438)
query : 1 - 2,439 (2,439/2,439)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
InterPro :
IPR001390 : Gamma-aminobutyric-acid A receptor, alpha subunit
IPR005435 : Gamma-aminobutyric-acid A receptor, alpha 5 subunit
IPR006029 : Neurotransmitter-gated ion-channel transmembrane domain
IPR006201 : Neurotransmitter-gated ion-channel
GO :
0004890 : Molecular Function : GABA-A receptor activity
0005216 : Molecular Function : ion channel activity
0006811 : Biological Process : ion transport
0006821 : Biological Process : chloride transport
0007214 : Biological Process : gamma-aminobutyric acid signaling pathway
0016020 : Cellular Component : membrane
0016021 : Cellular Component : integral component of membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, mito 9, cyto_nucl 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026792)
HIX0222376
HIT000670797 (
ENST00000557500
)
(Protein of unknown function DUF846, eukaryotic family protein.)
genome : 27,210,064 - 27,215,532 (5,469)
query : 1 - 617 (617/617)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 12, extr 7, pero 6, cyto_golg 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222376)
HIX0026811
HIT000211221 (
NM_033223
)
(Gamma-aminobutyric acid receptor subunit gamma-3; GABA(A) receptor subunit gamma-3; Precursor;)
genome : 27,216,429 - 27,778,373 (561,945)
query : 1 - 2,004 (2,004/2,031)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026811)
HIX0026811
HIT000128527 (
ENST00000333743
)
(Gamma-aminobutyric acid receptor subunit gamma-3; GABA(A) receptor subunit gamma-3; Precursor;)
genome : 27,216,429 - 27,778,373 (561,945)
query : 1 - 2,004 (2,004/2,004)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026811)
HIX0026811
HIT000724825 (
NM_001270873
)
(Gamma-aminobutyric acid receptor subunit gamma-3; GABA(A) receptor subunit gamma-3; Precursor;)
genome : 27,216,429 - 27,726,479 (510,051)
query : 1 - 1,512 (1,512/1,512)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, mito 3, pero 2, lyso 2, cyto_mito 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026811)
HIX0026811
HIT000091919
(
BC029850
)
Representative transcript
(Gamma-aminobutyric acid receptor subunit gamma-3; GABA(A) receptor subunit gamma-3; Precursor;)
genome : 27,216,517 - 27,778,373 (561,857)
query : 1 - 1,915 (1,915/1,942)
10 exons
identity = 0.999
5'(1.000;1.000;1.000;0.995;1.000;1.000;1.000;
0.995;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR005437 : Gamma-aminobutyric-acid A receptor, gamma subunit
IPR005440 : Gamma-aminobutyric-acid A receptor, gamma 3 subunit
IPR006028 : Gamma-aminobutyric acid A receptor/Glycine receptor alpha
IPR006029 : Neurotransmitter-gated ion-channel transmembrane domain
IPR006201 : Neurotransmitter-gated ion-channel
IPR006202 : Neurotransmitter-gated ion-channel ligand-binding domain
IPR018000 : Neurotransmitter-gated ion-channel, conserved site
GO :
0004890 : Molecular Function : GABA-A receptor activity
0005230 : Molecular Function : extracellular ligand-gated ion channel activity
0006810 : Biological Process : transport
0006811 : Biological Process : ion transport
0006821 : Biological Process : chloride transport
0007214 : Biological Process : gamma-aminobutyric acid signaling pathway
0016020 : Cellular Component : membrane
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026811)
Ortholog candidate ( ->
Evola
)
Bos
sp. (Cow) : ENSBTAT00000050453
Macaca
sp. (Macaque) : ENSMMUT00000033132
Oryzias
sp. (Medaka) : ENSORLT00000005622
Pongo
sp. (Orangutan) : ENSPPYT00000007410
Pan
sp. (Chimpanzee) : ENSPTRT00000012612
Tetraodon
sp. (Tetraodon) : GSTENT00020136001
Takifugu
sp. (Fugu) : SINFRUT00000162277
Mus
sp. (Mouse) : X59300
Rattus
sp. (Rat) : X63324
Gallus
sp. (Chicken) : XM_001233420
Monodelphis
sp. (Opossum) : XM_001362774
Equus
sp. (Horse) : XM_001494245
Danio
sp. (Zebrafish) : XM_001920226
Canis
sp. (Dog) : XM_545802
HIX0026811
HIT000052965
(
BC045709
)
(Gamma-aminobutyric acid receptor subunit gamma-3 isoform 2 precursor.)
genome : 27,216,540 - 27,726,482 (509,943)
query : 1 - 1,404 (1,404/1,419)
6 exons
identity = 0.997
5'(1.000;1.000;1.000;1.000;0.988;0.996)3'
coverage = 1.000
InterPro :
IPR005437 : Gamma-aminobutyric-acid A receptor, gamma subunit
IPR006201 : Neurotransmitter-gated ion-channel
IPR006202 : Neurotransmitter-gated ion-channel ligand-binding domain
IPR018000 : Neurotransmitter-gated ion-channel, conserved site
GO :
0004890 : Molecular Function : GABA-A receptor activity
0005230 : Molecular Function : extracellular ligand-gated ion channel activity
0006810 : Biological Process : transport
0006811 : Biological Process : ion transport
0006821 : Biological Process : chloride transport
0007214 : Biological Process : gamma-aminobutyric acid signaling pathway
0016020 : Cellular Component : membrane
0016021 : Cellular Component : integral component of membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, mito 3, pero 2, lyso 2, cyto_mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026811)
HIX0026811
HIT000668431 (
ENST00000555083
)
(Gamma-aminobutyric acid receptor subunit gamma-3; GABA(A) receptor subunit gamma-3; Precursor;)
genome : 27,216,540 - 27,726,483 (509,944)
query : 1 - 1,405 (1,405/1,405)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, mito 3, pero 2, lyso 2, cyto_mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026811)
HIX0026811
HIT000666817 (
ENST00000553440
)
(Gamma-aminobutyric acid receptor subunit gamma-3; GABA(A) receptor subunit gamma-3; Precursor;)
genome : 27,216,591 - 27,272,221 (55,631)
query : 1 - 615 (615/615)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, mito 3.5, mito_pero 3, lyso 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026811)
HIX0026811
HIT000217184
(
S82769
)
(Gamma-aminobutyric acid receptor subunit gamma-3; GABA(A) receptor subunit gamma-3; Precursor;)
genome : 27,216,667 - 27,778,127 (561,461)
query : 17 - 1,536 (1,520/1,536)
10 exons
identity = 0.997
5'(1.000;0.993;1.000;1.000;1.000;1.000;1.000;
0.990;1.000;0.997)3'
coverage = 0.990
InterPro :
IPR005437 : Gamma-aminobutyric-acid A receptor, gamma subunit
IPR005440 : Gamma-aminobutyric-acid A receptor, gamma 3 subunit
IPR006028 : Gamma-aminobutyric acid A receptor/Glycine receptor alpha
IPR006029 : Neurotransmitter-gated ion-channel transmembrane domain
IPR006201 : Neurotransmitter-gated ion-channel
IPR006202 : Neurotransmitter-gated ion-channel ligand-binding domain
IPR018000 : Neurotransmitter-gated ion-channel, conserved site
GO :
0004890 : Molecular Function : GABA-A receptor activity
0005230 : Molecular Function : extracellular ligand-gated ion channel activity
0006810 : Biological Process : transport
0006811 : Biological Process : ion transport
0006821 : Biological Process : chloride transport
0007214 : Biological Process : gamma-aminobutyric acid signaling pathway
0016020 : Cellular Component : membrane
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026811)
HIX0173155
HIT000537872 (
ENST00000439938
)
(Hypothetical short protein.)
genome : 27,402,762 - 27,406,466 (3,705)
query : 1 - 970 (970/970)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto_nucl 9, cyto 7.5, cyto_pero 6.83333,
nucl 6, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173155)
HIX0134142
HIT000536268 (
ENST00000438334
)
(Protein-tyrosine phosphatase-like domain containing protein.)
genome : 27,453,236 - 27,453,782 (547)
query : 1 - 547 (547/547)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, mito 7, nucl 6.5, extr_plas 6.5,
cyto_nucl 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0134142)
HIX0026811
HIT000668139 (
ENST00000554786
)
(Conserved hypothetical protein.)
genome : 27,516,688 - 27,540,344 (23,657)
query : 1 - 446 (446/446)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026811)
HIX0026811
HIT000668053 (
ENST00000554696
)
(Gamma-aminobutyric acid receptor subunit gamma-3; GABA(A) receptor subunit gamma-3; Precursor;)
genome : 27,516,689 - 27,772,661 (255,973)
query : 1 - 774 (774/774)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 23, mito 3.5, cyto_mito 3.5, cyto 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026811)
HIX0026811
HIT000670892 (
ENST00000557596
)
(Gamma-aminobutyric acid receptor subunit gamma-3; GABA(A) receptor subunit gamma-3; Precursor;)
genome : 27,573,964 - 27,595,542 (21,579)
query : 1 - 342 (342/342)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026811)
HIX0222349
HIT000668327 (
ENST00000554978
)
(Serpin domain containing protein.)
genome : 27,585,671 - 27,585,951 (281)
query : 1 - 281 (281/281)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15, cyto 13, pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222349)
HIX0038433
HIT000306430
(
CR749394
)
Representative transcript
(Conserved hypothetical protein.)
genome : 27,607,456 - 27,611,544 (4,089)
query : 1 - 4,087 (4,087/4,163)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0038433)
HIX0038433
HIT000680945 (
ENST00000567953
)
(Conserved hypothetical protein.)
genome : 27,607,456 - 27,611,544 (4,089)
query : 1 - 4,089 (4,089/4,089)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, cyto_nucl 15.5, nucl 11, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0038433)
HIX0222367
HIT000670330 (
ENST00000557025
)
(Hypothetical short protein.)
genome : 27,663,942 - 27,665,881 (1,940)
query : 1 - 380 (380/380)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222367)
HIX0222339
HIT000667289 (
ENST00000553919
)
(Conserved hypothetical protein.)
genome : 27,667,527 - 27,673,484 (5,958)
query : 1 - 318 (318/318)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, mito 10, cyto 1.5, cyto_pero 1.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222339)
HIX0222103
HIT000669956 (
ENST00000556642
)
(Non-protein coding transcript.)
genome : 27,728,181 - 27,786,343 (58,163)
query : 1 - 347 (347/347)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222103)
HIX0026811
HIT000549264 (
ENST00000451330
)
(Gamma-aminobutyric acid receptor subunit gamma-3; GABA(A) receptor subunit gamma-3; Precursor;)
genome : 27,765,118 - 27,776,066 (10,949)
query : 1 - 717 (717/717)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0026811)
HIX0222103
HIT000670473 (
ENST00000557170
)
(Hypothetical protein.)
genome : 27,782,046 - 27,787,137 (5,092)
query : 1 - 1,100 (1,100/1,100)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 11, cyto_nucl 9.66667, cyto 9.5,
cyto_pero 7.16667, nucl 4.5, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222103)
HIX0222336
HIT000667193 (
ENST00000553822
)
(Hypothetical short protein.)
genome : 27,866,680 - 27,874,435 (7,756)
query : 1 - 336 (336/336)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, cyto 4, mito 3, cyto_nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222336)
HIX0222334
HIT000667018 (
ENST00000553644
)
(Non-protein coding transcript.)
genome : 27,929,644 - 27,930,914 (1,271)
query : 1 - 209 (209/209)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222334)
HIX0012054
HIT000035656
(
BC012097
)
(P protein; Melanocyte-specific transporter protein; Pink-eyed dilution protein homolog;)
genome : 28,000,024 - 28,344,458 (344,435)
query : 1 - 3,065 (3,065/3,082)
23 exons
identity = 0.999
3'(1.000;0.989;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.992;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
InterPro :
IPR004680 : Citrate transporter-like domain
GO :
0016021 : Cellular Component : integral component of membrane
0055085 : Biological Process : transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012054)
HIX0012054
HIT000197321 (
NM_000275
)
(P protein; Melanocyte-specific transporter protein; Pink-eyed dilution protein homolog;)
genome : 28,000,024 - 28,344,458 (344,435)
query : 1 - 3,137 (3,137/3,154)
24 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012054)
HIX0012054
HIT000308901 (
ENST00000354638
)
(P protein; Melanocyte-specific transporter protein; Pink-eyed dilution protein homolog;)
genome : 28,000,021 - 28,344,504 (344,484)
query : 1 - 3,186 (3,186/3,186)
24 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012054)
HIX0012054
HIT000308445 (
ENST00000353809
)
(P protein; Melanocyte-specific transporter protein; Pink-eyed dilution protein homolog;)
genome : 28,000,021 - 28,344,458 (344,438)
query : 1 - 3,068 (3,068/3,068)
23 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012054)
HIX0012054
HIT000197043
(
M99564
)
Representative transcript
(P protein; Melanocyte-specific transporter protein; Pink-eyed dilution protein homolog;)
genome : 28,000,033 - 28,344,400 (344,368)
query : 1 - 3,070 (3,070/3,070)
24 exons
identity = 0.999
3'(1.000;0.989;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.994;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR004680 : Citrate transporter-like domain
GO :
0016021 : Cellular Component : integral component of membrane
0055085 : Biological Process : transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012054)
Ortholog candidate ( ->
Evola
)
Rattus
sp. (Rat) : AB191343
Mus
sp. (Mouse) : AK087494
Oryzias
sp. (Medaka) : AY605286
Equus
sp. (Horse) : DQ454071
Tetraodon
sp. (Tetraodon) : GSTENT00020137001
Takifugu
sp. (Fugu) : SINFRUT00000162273
Pan
sp. (Chimpanzee) : XM_001162129
Monodelphis
sp. (Opossum) : XM_001366488
Gallus
sp. (Chicken) : XM_425579
Canis
sp. (Dog) : XM_545800
Bos
sp. (Cow) : XM_602611
Danio
sp. (Zebrafish) : XM_690715
Macaca
sp. (Macaque) : XR_013669
HIX0173130
HIT000517034 (
ENST00000419100
)
(Hypothetical short protein.)
genome : 28,020,767 - 28,021,944 (1,178)
query : 1 - 418 (418/418)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, mito 4, cyto 3.5, cyto_pero 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173130)
HIX0173178
HIT000552019 (
ENST00000454085
)
(Ribosomal protein L18/L5 family protein.)
genome : 28,140,850 - 28,141,728 (879)
query : 1 - 879 (879/879)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, mito 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173178)
HIX0012054
HIT000364274 (
ENST00000382996
)
(P protein; Melanocyte-specific transporter protein; Pink-eyed dilution protein homolog;)
genome : 28,195,655 - 28,344,458 (148,804)
query : 1 - 2,117 (2,117/2,117)
19 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012054)
HIX0012054
HIT000196997
(
M97901
)
(P protein; Melanocyte-specific transporter protein; Pink-eyed dilution protein homolog;)
genome : 28,231,732 - 28,261,278 (29,547)
query : 1 - 379 (379/396)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.957
InterPro :
IPR004680 : Citrate transporter-like domain
GO :
0016021 : Cellular Component : integral component of membrane
0055085 : Biological Process : transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 28, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012054)
HIX0012054
HIT000543512 (
ENST00000445578
)
(P protein; Melanocyte-specific transporter protein; Pink-eyed dilution protein homolog;)
genome : 28,261,250 - 28,344,442 (83,193)
query : 1 - 750 (750/750)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 10, nucl 7, pero 5.5, extr_plas 4, mito_pero 4,
plas 3.5, extr 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012054)
HIX0012054
HIT000529035 (
ENST00000431101
)
(P protein; Melanocyte-specific transporter protein; Pink-eyed dilution protein homolog;)
genome : 28,263,558 - 28,344,439 (80,882)
query : 1 - 996 (996/996)
7 exons
identity = 0.997
3'(1.000;1.000;1.000;1.000;1.000;1.000;0.984)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 10, pero 6.5, nucl 6, mito_pero 4.5, plas 3.5,
extr_plas 3.5, extr 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012054)
HIX0221960
HIT000028913
(
AL834183
)
Representative transcript
(E3 ubiquitin-protein ligase HERC2; EC=6.3.2.-; HECT domain and RCC1-like domain-containing protein 2;)
genome : 28,356,427 - 28,362,697 (6,271)
query : 1 - 2,113 (2,113/2,128)
7 exons
identity = 0.998
3'(0.997;1.000;1.000;1.000;1.000;1.000;0.996)5'
coverage = 1.000
EC number :
EC 6.3.2.-
InterPro :
IPR000569 : HECT
GO :
0004842 : Molecular Function : ubiquitin-protein transferase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 21.5, cyto_mito 12.1667, nucl 5,
cyto_pero 3.33333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0221960)
HIX0221960
HIT000679667 (
ENST00000566635
)
(HECT domain containing protein.)
genome : 28,356,425 - 28,362,697 (6,273)
query : 1 - 2,114 (2,114/2,114)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18.5, cyto_mito 11.5, nucl 5.5, cyto_nucl 5,
cyto_pero 4.16667, cyto 3, pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0221960)
HIX0221960
HIT000686967 (
ENST00000574661
)
(HECT domain containing protein.)
genome : 28,356,425 - 28,362,697 (6,273)
query : 1 - 2,114 (2,114/2,114)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18.5, cyto_mito 11.5, nucl 5.5, cyto_nucl 5,
cyto_pero 4.16667, cyto 3, pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0221960)
HIX0221960
HIT000675344 (
ENST00000562136
)
(HECT domain containing protein.)
genome : 28,356,908 - 28,358,863 (1,956)
query : 1 - 632 (632/632)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16.8333, nucl 15, cyto 10.5,
cyto_pero 6.66667, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0221960)
HIX0221960
HIT000045102
(
AK125229
)
(E3 ubiquitin-protein ligase HERC2; EC=6.3.2.-; HECT domain and RCC1-like domain-containing protein 2;)
genome : 28,360,427 - 28,363,567 (3,141)
query : 1 - 2,018 (2,018/2,018)
2 exons
identity = 0.998
3'(1.000;0.998)5'
coverage = 1.000
EC number :
EC 6.3.2.-
InterPro :
IPR000569 : HECT
GO :
0004842 : Molecular Function : ubiquitin-protein transferase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17.5, cyto_mito 11.1667, extr 4, nucl 4,
cyto_pero 3.83333, cyto 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0221960)
HIX0221960
HIT000681191 (
ENST00000568206
)
(HECT domain containing protein.)
genome : 28,360,427 - 28,363,567 (3,141)
query : 1 - 2,018 (2,018/2,018)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 16, cyto_nucl 5.66667, cyto 5, cyto_pero 4.66667,
extr 4, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0221960)
HIX0221960
HIT000684844 (
ENST00000572196
)
(HECT domain containing protein.)
genome : 28,360,427 - 28,363,567 (3,141)
query : 1 - 2,018 (2,018/2,018)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 16, cyto_nucl 5.66667, cyto 5, cyto_pero 4.66667,
extr 4, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0221960)
HIX0222272
HIT000436980
(
DQ570449
)
Representative transcript
(Non-protein coding transcript.)
genome : 28,375,377 - 28,375,407 (31)
query : 1 - 31 (31/32)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 0.969
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222272)
HIX0222744
HIT000677636 (
ENST00000564519
)
(Conserved hypothetical protein.)
genome : 28,386,885 - 28,387,598 (714)
query : 1 - 323 (323/323)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222744)
HIX0222822
HIT000682705 (
ENST00000569772
)
(Conserved hypothetical protein.)
genome : 28,397,905 - 28,419,569 (21,665)
query : 1 - 598 (598/598)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 20, nucl 18.5, cyto 10.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222822)
HIX0221965
HIT000435677
(
BC148318
)
Representative transcript
(E3 ubiquitin-protein ligase HERC2; EC=6.3.2.-; HECT domain and RCC1-like domain-containing protein 2;)
genome : 28,421,573 - 28,446,701 (25,129)
query : 20 - 2,090 (2,071/2,111)
16 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 0.981
EC number :
EC 6.3.2.-
InterPro :
IPR000408 : Regulator of chromosome condensation, RCC1
IPR000433 : Zinc finger, ZZ-type
IPR004939 : Anaphase-promoting complex, subunit 10/DOC domain
IPR008979 : Galactose-binding domain-like
IPR009091 : Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
IPR014722 : Ribosomal protein L2 domain 2
IPR021097 : CPH domain
GO :
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28.5, cyto_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0221965)
HIX0221965
HIT000042850
(
AK122977
)
(E3 ubiquitin-protein ligase HERC2; EC=6.3.2.-; HECT domain and RCC1-like domain-containing protein 2;)
genome : 28,435,347 - 28,449,082 (13,736)
query : 1 - 3,523 (3,523/3,523)
10 exons
identity = 0.998
3'(0.995;1.000;0.995;1.000;1.000;1.000;1.000;
1.000;1.000;0.999)5'
coverage = 1.000
EC number :
EC 6.3.2.-
InterPro :
IPR000433 : Zinc finger, ZZ-type
IPR004939 : Anaphase-promoting complex, subunit 10/DOC domain
IPR008979 : Galactose-binding domain-like
IPR009060 : UBA-like
IPR014722 : Ribosomal protein L2 domain 2
IPR021097 : CPH domain
GO :
0005515 : Molecular Function : protein binding
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, E.R. 3, lyso 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0221965)
HIX0221965
HIT000680864 (
ENST00000567869
)
(CPH domain containing protein.)
genome : 28,435,347 - 28,449,082 (13,736)
query : 1 - 3,523 (3,523/3,523)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, E.R. 3, lyso 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0221965)
HIX0221965
HIT000685171 (
ENST00000572577
)
(CPH domain containing protein.)
genome : 28,435,347 - 28,449,082 (13,736)
query : 1 - 3,523 (3,523/3,523)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, E.R. 3, lyso 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0221965)
HIX0017540
HIT000677461_01 (
ENST00000564334
)
(Hypothetical protein.)
genome : 28,458,885 - 28,483,930 (25,046)
query : 1 - 2,976 (2,976/2,976)
18 exons
identity = 0.956
3'(0.953;0.952;0.945;0.959;0.954;0.955;0.967;
0.944;0.961;0.941;0.962;0.990;0.966;0.980;
0.969;0.944;0.952;0.957)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 10.5, cyto_nucl 8, cysk 8, extr 7, nucl 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017540)
HIX0017540
HIT000675869_01 (
ENST00000562687
)
(Cytochrome b5-like heme/steroid binding domain containing protein.)
genome : 28,458,888 - 28,566,579 (107,692)
query : 1 - 3,825 (3,825/3,825)
24 exons
identity = 0.952
3'(0.952;0.954;0.959;0.962;0.955;0.959;0.968;
0.943;0.961;0.937;0.962;0.985;0.954;0.984;
0.970;0.940;0.954;0.942;0.965;0.915;0.913;
0.946;0.912;0.958)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15, extr 11, cyto 11, nucl 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017540)
HIX0017540
HIT000683061_01 (
ENST00000570151
)
(Hypothetical protein.)
genome : 28,458,888 - 28,459,951 (1,064)
query : 1 - 382 (382/382)
2 exons
identity = 0.958
3'(0.952;0.967)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, cyto_mito 5.5, cyto 5, mito 4, nucl 2,
pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017540)
HIX0017540
HIT000459873_07
(
DQ593342
)
(Non-protein coding transcript.)
genome : 28,465,707 - 28,465,735 (29)
query : 2 - 30 (29/30)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 0.967
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017540)
HIX0017540
HIT000682278_01 (
ENST00000569335
)
(Hypothetical protein.)
genome : 28,467,294 - 28,474,662 (7,369)
query : 1 - 582 (582/582)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, mito 4, cyto 3.5, cyto_nucl 3, nucl 1.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017540)
HIX0172994
HIT000458314_08
(
DQ591783
)
Representative transcript
(Non-protein coding transcript.)
genome : 28,496,204 - 28,496,234 (31)
query : 1 - 31 (31/31)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0172994)
HIX0017540
HIT000098031
(
BC045544
)
Representative transcript
(E3 ubiquitin-protein ligase HERC2; EC=6.3.2.-; HECT domain and RCC1-like domain-containing protein 2;)
genome : 28,499,633 - 28,567,295 (67,663)
query : 1 - 3,122 (3,122/3,136)
21 exons
identity = 0.998
3'(1.000;1.000;1.000;0.995;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.966;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.3.2.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, cyto 6, nucl 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017540)
HIX0017540
HIT000677841 (
ENST00000564734
)
(Conserved hypothetical protein.)
genome : 28,499,634 - 28,567,295 (67,662)
query : 1 - 3,121 (3,121/3,121)
21 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.966;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, cyto 6, nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017540)
HIX0017540
HIT000435445
(
BC142951
)
(E3 ubiquitin-protein ligase HERC2; EC=6.3.2.-; HECT domain and RCC1-like domain-containing protein 2;)
genome : 28,501,014 - 28,567,287 (66,274)
query : 3 - 2,975 (2,973/2,998)
19 exons
identity = 0.999
3'(0.992;1.000;0.990;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.994;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.997
EC number :
EC 6.3.2.-
InterPro :
IPR000408 : Regulator of chromosome condensation, RCC1
IPR009091 : Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17.5, cyto_nucl 15.5, cyto 12.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017540)
HIX0017540
HIT000687876 (
ENST00000575725
)
(Conserved hypothetical protein.)
genome : 28,501,018 - 28,567,295 (66,278)
query : 1 - 3,090 (3,090/3,090)
20 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.966;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, cyto 6, nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017540)
HIX0017540
HIT000676814 (
ENST00000563670
)
(Conserved hypothetical protein.)
genome : 28,517,190 - 28,518,314 (1,125)
query : 1 - 618 (618/618)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, mito 5, nucl 1, cyto 1, cyto_nucl 1, lyso 1,
golg 1, cyto_golg 1
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017540)
HIX0017540
HIT000687519 (
ENST00000575299
)
(Conserved hypothetical protein.)
genome : 28,517,190 - 28,518,314 (1,125)
query : 1 - 618 (618/618)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, mito 5, nucl 1, cyto 1, cyto_nucl 1, lyso 1,
golg 1, cyto_golg 1
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017540)
HIX0017540
HIT000677508 (
ENST00000564383
)
(Conserved hypothetical protein.)
genome : 28,525,180 - 28,544,629 (19,450)
query : 1 - 471 (471/471)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 22, cyto_nucl 18, nucl 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017540)
HIX0038221
HIT000070636
(
AF129928
)
Representative transcript
(Hypothetical short protein.)
genome : 28,534,033 - 28,534,812 (780)
query : 18 - 797 (780/799)
1 exon
identity = 0.996
3'(0.996)5'
coverage = 0.976
SOSUI :
SOLUBLE PROTEIN
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0038221)
HIX0222093
HIT000643965_05 (
ENST00000544920
)
(Hypothetical protein.)
genome : 28,560,798 - 28,561,102 (305)
query : 1 - 305 (305/305)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14.5, cyto_nucl 14, cyto 8.5, extr 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222093)
HIX0222093
HIT000688093_04 (
ENST00000575972
)
(Hypothetical protein.)
genome : 28,560,798 - 28,561,102 (305)
query : 1 - 305 (305/305)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14.5, cyto_nucl 14, cyto 8.5, extr 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222093)
HIX0172789
HIT000708826_05 (
ENST00000597044
)
(Hypothetical protein.)
genome : 28,560,813 - 28,561,205 (393)
query : 1 - 393 (393/399)
1 exon
identity = 0.985
5'(0.985)3'
coverage = 0.985
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15, mito 7, cyto_nucl 6.16667, cyto 5.5,
cyto_pero 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0172789)
HIX0172789
HIT000588730_06 (
ENST00000484902
)
(Ribosomal protein L41 family protein.)
genome : 28,560,839 - 28,560,919 (81)
query : 1 - 81 (81/81)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0172789)
HIX0172789
HIT000635470_06 (
ENST00000536425
)
(Ribosomal protein L41 family protein.)
genome : 28,560,839 - 28,560,916 (78)
query : 1 - 78 (78/78)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0172789)
HIX0172789
HIT000694399_05 (
ENST00000582508
)
(Ribosomal protein L41 family protein.)
genome : 28,560,839 - 28,560,916 (78)
query : 1 - 78 (78/78)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0172789)
HIX0017540
HIT000088711_03
(
BC015486
)
(Hypothetical protein.)
genome : 28,565,279 - 28,567,265 (1,987)
query : 1 - 480 (480/497)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18.5, mito_nucl 12.5, mito 5.5, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017540)
HIX0017540
HIT000677083 (
ENST00000563945
)
(Conserved hypothetical protein.)
genome : 28,565,279 - 28,567,265 (1,987)
query : 1 - 480 (480/491)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 11, mito 7, cyto_nucl 7, nucl 6, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017540)
HIX0017540
HIT000689029 (
ENST00000577060
)
(Conserved hypothetical protein.)
genome : 28,565,279 - 28,567,265 (1,987)
query : 1 - 480 (480/491)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 11, mito 7, cyto_nucl 7, nucl 6, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017540)
HIX0222195
HIT000676022_01 (
ENST00000562845
)
(Hypothetical protein.)
genome : 28,577,374 - 28,581,755 (4,382)
query : 1 - 725 (725/725)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 11, nucl 9, cyto 7, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222195)
HIX0222195
HIT000687754_01 (
ENST00000575577
)
(Hypothetical protein.)
genome : 28,577,374 - 28,581,755 (4,382)
query : 1 - 725 (725/725)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 11, nucl 9, cyto 7, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222195)
HIX0222195
HIT000687060_01 (
ENST00000574769
)
(Hypothetical protein.)
genome : 28,577,376 - 28,581,745 (4,370)
query : 1 - 726 (726/726)
4 exons
identity = 0.999
5'(1.000;1.000;1.000;0.994)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 11, nucl 9, cyto 7, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222195)
HIX0222195
HIT000679536_01 (
ENST00000566500
)
(Hypothetical protein.)
genome : 28,577,383 - 28,581,755 (4,373)
query : 1 - 716 (716/716)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, nucl 11.5, cyto_nucl 8.5, cyto 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222195)
HIX0222195
HIT000714035_01 (
ENST00000602302
)
(Hypothetical protein.)
genome : 28,577,383 - 28,581,755 (4,373)
query : 1 - 716 (716/716)
4 exons
identity = 0.999
5'(1.000;1.000;1.000;0.994)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, nucl 11.5, cyto_nucl 8.5, cyto 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222195)
HIX0172865
HIT000437389_12
(
DQ570858
)
Representative transcript
(Non-protein coding transcript.)
genome : 28,580,103 - 28,580,133 (31)
query : 1 - 31 (31/31)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0172865)
HIX0172995
HIT000458314_09
(
DQ591783
)
Representative transcript
(Non-protein coding transcript.)
genome : 28,585,116 - 28,585,146 (31)
query : 1 - 31 (31/31)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0172995)
HIX0222218
HIT000679098_05 (
ENST00000566048
)
(Non-protein coding transcript.)
genome : 28,591,624 - 28,591,790 (167)
query : 1 - 167 (167/167)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222218)
HIX0222218
HIT000683820_05 (
ENST00000571013
)
(Non-protein coding transcript.)
genome : 28,591,624 - 28,591,790 (167)
query : 1 - 167 (167/167)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222218)
HIX0222218
HIT000681925_05 (
ENST00000568969
)
(Non-protein coding transcript.)
genome : 28,591,636 - 28,591,793 (158)
query : 1 - 158 (158/158)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222218)
HIX0222218
HIT000688978_05 (
ENST00000576997
)
(Non-protein coding transcript.)
genome : 28,591,636 - 28,591,793 (158)
query : 1 - 158 (158/158)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222218)
HIX0173183
HIT000552658 (
ENST00000454724
)
(Golgin subfamily A member 6-like protein.)
genome : 28,594,197 - 28,603,226 (9,030)
query : 1 - 2,308 (2,308/2,308)
10 exons
identity = 0.997
3'(1.000;1.000;0.987;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 15.5, cyto 13.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173183)
HIX0173183
HIT000681597 (
ENST00000568624
)
(Conserved hypothetical protein.)
genome : 28,594,197 - 28,603,226 (9,030)
query : 1 - 3,100 (3,100/3,100)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17.5, cyto_nucl 15.8333, cyto 13,
cyto_golg 7.33333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173183)
HIX0173183
HIT000677996 (
ENST00000564897
)
(Conserved hypothetical protein.)
genome : 28,594,197 - 28,603,160 (8,964)
query : 1 - 3,034 (3,034/3,034)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto_nucl 15.5, cyto 10
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173183)
HIX0211575
HIT000448604_06
(
DQ582073
)
Representative transcript
(Non-protein coding transcript.)
genome : 28,595,212 - 28,595,242 (31)
query : 1 - 31 (31/31)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0211575)
HIX0211575
HIT000448603_06
(
DQ582072
)
(Non-protein coding transcript.)
genome : 28,595,212 - 28,595,241 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0211575)
HIX0173183
HIT000714119_02 (
ENST00000602386
)
(Hypothetical protein.)
genome : 28,595,403 - 28,603,226 (7,824)
query : 1 - 1,881 (1,881/1,881)
9 exons
identity = 0.985
3'(1.000;0.999;1.000;1.000;0.983)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 15.5, nucl 10
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173183)
HIX0172895
HIT000440854_07
(
DQ574323
)
Representative transcript
(Non-protein coding transcript.)
genome : 28,598,423 - 28,598,451 (29)
query : 1 - 29 (29/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 0.967
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0172895)
HIX0012052
HIT000306733
(
CR749803
)
(Gamma-aminobutyric acid receptor subunit beta-3; GABA(A) receptor subunit beta-3; Precursor;)
genome : 26,788,699 - 27,184,686 (395,988)
query : 1 - 5,934 (5,934/6,082)
10 exons
identity = 0.999
3'(1.000;1.000;1.000;0.987)5'
coverage = 1.000
InterPro :
IPR002289 : Gamma-aminobutyric-acid A receptor, beta subunit
IPR006028 : Gamma-aminobutyric acid A receptor/Glycine receptor alpha
IPR006029 : Neurotransmitter-gated ion-channel transmembrane domain
IPR006201 : Neurotransmitter-gated ion-channel
IPR006202 : Neurotransmitter-gated ion-channel ligand-binding domain
IPR018000 : Neurotransmitter-gated ion-channel, conserved site
GO :
0004890 : Molecular Function : GABA-A receptor activity
0005216 : Molecular Function : ion channel activity
0005230 : Molecular Function : extracellular ligand-gated ion channel activity
0006810 : Biological Process : transport
0006811 : Biological Process : ion transport
0016020 : Cellular Component : membrane
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012052)
HIX0012052
HIT000208465 (
NM_021912
)
(Gamma-aminobutyric acid receptor subunit beta-3 isoform 2 precursor.)
genome : 26,788,693 - 27,018,935 (230,243)
query : 1 - 5,733 (5,733/5,733)
9 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 9, E.R. 6.5, extr 5, E.R._mito 4.33333,
E.R._golg 4.33333, cyto 4, cyto_pero 3.83333, cyto_mito 3.16667,
cyto_golg 3.16667
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012052)
HIX0012052
HIT000197826 (
NM_000814
)
(Gamma-aminobutyric acid receptor subunit beta-3; GABA(A) receptor subunit beta-3; Precursor;)
genome : 26,788,693 - 27,018,223 (229,531)
query : 1 - 5,783 (5,783/5,783)
9 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 22, E.R. 6, pero 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012052)
HIX0012052
HIT000119100 (
ENST00000311550
)
(Gamma-aminobutyric acid receptor subunit beta-3; GABA(A) receptor subunit beta-3; Precursor;)
genome : 26,788,693 - 27,018,221 (229,529)
query : 1 - 5,781 (5,781/5,781)
9 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 22, E.R. 6, pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012052)
HIX0012052
HIT000640864 (
ENST00000541819
)
(Gamma-aminobutyric acid receptor subunit beta-3; GABA(A) receptor subunit beta-3; Precursor;)
genome : 26,788,699 - 27,184,686 (395,988)
query : 1 - 5,934 (5,934/5,934)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012052)
HIX0012052
HIT000115307 (
ENST00000299267
)
(Gamma-aminobutyric acid receptor subunit beta-3 isoform 2 precursor.)
genome : 26,791,319 - 27,018,935 (227,617)
query : 1 - 3,107 (3,107/3,107)
9 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 9, E.R. 6.5, extr 5, E.R._mito 4.33333,
E.R._golg 4.33333, cyto 4, cyto_pero 3.83333, cyto_mito 3.16667,
cyto_golg 3.16667
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012052)
HIX0012052
HIT000035026
(
BC010641
)
(Gamma-aminobutyric acid receptor subunit beta-3; GABA(A) receptor subunit beta-3; Precursor;)
genome : 26,791,462 - 27,018,189 (226,728)
query : 1 - 2,980 (2,980/2,994)
9 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR002289 : Gamma-aminobutyric-acid A receptor, beta subunit
IPR006028 : Gamma-aminobutyric acid A receptor/Glycine receptor alpha
IPR006029 : Neurotransmitter-gated ion-channel transmembrane domain
IPR006201 : Neurotransmitter-gated ion-channel
IPR006202 : Neurotransmitter-gated ion-channel ligand-binding domain
IPR018000 : Neurotransmitter-gated ion-channel, conserved site
GO :
0004890 : Molecular Function : GABA-A receptor activity
0005216 : Molecular Function : ion channel activity
0005230 : Molecular Function : extracellular ligand-gated ion channel activity
0006810 : Biological Process : transport
0006811 : Biological Process : ion transport
0016020 : Cellular Component : membrane
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 22, E.R. 6, pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012052)
HIX0012052
HIT000668971 (
ENST00000555632
)
(Gamma-aminobutyric acid receptor subunit beta-3; GABA(A) receptor subunit beta-3; Precursor;)
genome : 26,792,403 - 27,018,161 (225,759)
query : 1 - 2,107 (2,107/2,107)
10 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 16, E.R._mito 3.83333, mito 3.5, extr 3, E.R. 3,
pero 3, E.R._golg 2.33333, mito_nucl 2.33333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012052)
HIX0012052
HIT000196506
(
M82919
)
Representative transcript
(Gamma-aminobutyric acid receptor subunit beta-3; GABA(A) receptor subunit beta-3; Precursor;)
genome : 26,792,780 - 27,018,161 (225,382)
query : 2 - 1,634 (1,633/1,634)
9 exons
identity = 0.999
3'(1.000;1.000;1.000)5'
coverage = 0.999
InterPro :
IPR002289 : Gamma-aminobutyric-acid A receptor, beta subunit
IPR006028 : Gamma-aminobutyric acid A receptor/Glycine receptor alpha
IPR006029 : Neurotransmitter-gated ion-channel transmembrane domain
IPR006201 : Neurotransmitter-gated ion-channel
IPR006202 : Neurotransmitter-gated ion-channel ligand-binding domain
IPR018000 : Neurotransmitter-gated ion-channel, conserved site
GO :
0004890 : Molecular Function : GABA-A receptor activity
0005216 : Molecular Function : ion channel activity
0005230 : Molecular Function : extracellular ligand-gated ion channel activity
0006810 : Biological Process : transport
0006811 : Biological Process : ion transport
0016020 : Cellular Component : membrane
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 22, E.R. 6, pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012052)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK147247
Rattus
sp. (Rat) : AY742860
Bos
sp. (Cow) : BT029788
Pongo
sp. (Orangutan) : CR857419
Macaca
sp. (Macaque) : DQ177187
Danio
sp. (Zebrafish) : ENSDART00000028735
Danio
sp. (Zebrafish) : ENSDART00000064718
Monodelphis
sp. (Opossum) : ENSMODT00000009962
Oryzias
sp. (Medaka) : ENSORLT00000012946
Oryzias
sp. (Medaka) : ENSORLT00000019834
Pan
sp. (Chimpanzee) : ENSPTRT00000044314
Tetraodon
sp. (Tetraodon) : GSTENT00020374001
Tetraodon
sp. (Tetraodon) : GSTENT00026915001
Takifugu
sp. (Fugu) : SINFRUT00000156340
Gallus
sp. (Chicken) : X54243
Equus
sp. (Horse) : XM_001493048
Canis
sp. (Dog) : XM_843389
HIX0012052
HIT000434177
(
AK315311
)
(Gamma-aminobutyric acid receptor subunit beta-3 isoform 2 precursor.)
genome : 26,792,940 - 27,018,935 (225,996)
query : 2 - 1,487 (1,486/1,487)
9 exons
identity = 0.999
3'(1.000;1.000;0.993)5'
coverage = 0.999
InterPro :
IPR002289 : Gamma-aminobutyric-acid A receptor, beta subunit
IPR006028 : Gamma-aminobutyric acid A receptor/Glycine receptor alpha
IPR006029 : Neurotransmitter-gated ion-channel transmembrane domain
IPR006201 : Neurotransmitter-gated ion-channel
IPR006202 : Neurotransmitter-gated ion-channel ligand-binding domain
IPR018000 : Neurotransmitter-gated ion-channel, conserved site
GO :
0004890 : Molecular Function : GABA-A receptor activity
0005216 : Molecular Function : ion channel activity
0005230 : Molecular Function : extracellular ligand-gated ion channel activity
0006810 : Biological Process : transport
0006811 : Biological Process : ion transport
0016020 : Cellular Component : membrane
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 9, E.R. 6.5, extr 5, E.R._mito 4.33333,
E.R._golg 4.33333, cyto 4, cyto_pero 3.83333, cyto_mito 3.16667,
cyto_golg 3.16667
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012052)
HIX0012052
HIT000667917 (
ENST00000554556
)
(Gamma-aminobutyric acid receptor subunit beta-3 isoform 3.)
genome : 26,806,216 - 27,018,204 (211,989)
query : 1 - 817 (817/817)
7 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 19, cyto_nucl 16, nucl 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012052)
HIX0222877
HIT000065843
(
AF071172
)
Representative transcript
(E3 ubiquitin-protein ligase HERC2; EC=6.3.2.-; HECT domain and RCC1-like domain-containing protein 2;)
genome : 28,356,189 - 28,567,250 (211,062)
query : 1 - 15,287 (15,287/15,304)
93 exons
identity = 0.999
3'(0.996;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.994;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.993;1.000;0.988;
0.991;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.989;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.996;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.995;0.993;1.000;1.000;0.993;
1.000;1.000;1.000;0.995;1.000;1.000;1.000;
0.995;1.000;0.984;1.000;1.000;1.000;0.990;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.3.2.-
InterPro :
IPR000408 : Regulator of chromosome condensation, RCC1
IPR000433 : Zinc finger, ZZ-type
IPR000569 : HECT
IPR001199 : Cytochrome b5-like heme/steroid binding domain
IPR004939 : Anaphase-promoting complex, subunit 10/DOC domain
IPR006624 : Beta-propeller repeat TECPR
IPR008979 : Galactose-binding domain-like
IPR009091 : Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
IPR010606 : Mib-herc2
IPR014722 : Ribosomal protein L2 domain 2
IPR021097 : CPH domain
GO :
0004842 : Molecular Function : ubiquitin-protein transferase activity
0008270 : Molecular Function : zinc ion binding
0016567 : Biological Process : protein ubiquitination
0020037 : Molecular Function : heme binding
0046872 : Molecular Function : metal ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222877)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AF071173
Monodelphis
sp. (Opossum) : ENSMODT00000039239
Tetraodon
sp. (Tetraodon) : GSTENT00020138001
Takifugu
sp. (Fugu) : SINFRUT00000159260
Macaca
sp. (Macaque) : XM_001109429
Equus
sp. (Horse) : XM_001917938
Rattus
sp. (Rat) : XM_218720
Canis
sp. (Dog) : XM_536160
Bos
sp. (Cow) : XM_615528
Danio
sp. (Zebrafish) : XM_681697
HIX0222877
HIT000201407 (
NM_004667
)
(E3 ubiquitin-protein ligase HERC2; EC=6.3.2.-; HECT domain and RCC1-like domain-containing protein 2;)
genome : 28,356,183 - 28,567,298 (211,116)
query : 1 - 15,340 (15,340/15,340)
93 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.3.2.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222877)
HIX0222877
HIT000108044 (
ENST00000261609
)
(E3 ubiquitin-protein ligase HERC2; EC=6.3.2.-; HECT domain and RCC1-like domain-containing protein 2;)
genome : 28,356,186 - 28,567,298 (211,113)
query : 1 - 15,337 (15,337/15,337)
93 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.3.2.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222877)
HIX0222877
HIT000688194 (
ENST00000576092
)
(E3 ubiquitin-protein ligase HERC2; EC=6.3.2.-; HECT domain and RCC1-like domain-containing protein 2;)
genome : 28,356,186 - 28,567,298 (211,113)
query : 1 - 15,337 (15,337/15,337)
93 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.3.2.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222877)
HIX0222877
HIT000688410 (
ENST00000576337
)
(E3 ubiquitin-protein ligase HERC2; EC=6.3.2.-; HECT domain and RCC1-like domain-containing protein 2;)
genome : 28,356,186 - 28,567,298 (211,113)
query : 1 - 15,337 (15,337/15,337)
93 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.3.2.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222877)
AC104569.7
27000001-27073321 F +
NCBI
AC135999.4
27073322-27120251 F -
NCBI
AC145196.3
27120252-27136492 F +
NCBI
EU606048.1
27136493-27138463 O -
NCBI
AC145167.2
27138464-27183335 F +
NCBI
AC127511.7
27183336-27364551 F -
NCBI
AC136896.6
27364552-27573103 F +
NCBI
AC145436.3
27573104-27586852 F -
NCBI
EU606049.1
27586853-27597019 O +
NCBI
AC144833.3
27597020-27640188 F +
NCBI
AC135326.7
27640189-27651859 F +
NCBI
AC104002.5
27651860-27818572 F -
NCBI
AC021979.6
27818573-27945295 F -
NCBI
AC090696.6
27945296-28110859 F -
NCBI
AC079090.4
28110860-28210100 F -
NCBI
AC124091.16
28210101-28336388 F -
NCBI
AC135329.12
28336389-28421251 F -
NCBI
AC126332.9
28421252-28557186 F +
NCBI
AC091304.15
28557187-28600000 F +
NCBI