bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0173283
HIT000700626_01 (
ENST00000588786
)
(Hypothetical protein.)
genome : 28,468,143 - 29,415,123 (946,981)
query : 1 - 817 (817/817)
7 exons
identity = 0.955
3'(0.940;0.929;0.992)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13.8333, cyto 11, mito_nucl 10.1667,
mito 9.5, nucl 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173283)
HIX0013327
HIT000030857
(
BC002394
)
Representative transcript
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,488,600 - 28,503,381 (14,782)
query : 1 - 1,671 (1,671/1,689)
16 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003492 : Batten's disease protein Cln3
GO :
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB125157
Mus
sp. (Mouse) : AK134036
Rattus
sp. (Rat) : BC083704
Danio
sp. (Zebrafish) : BC085653
Bos
sp. (Cow) : BC118318
Canis
sp. (Dog) : ENSCAFT00000027142
Oryzias
sp. (Medaka) : ENSORLT00000021528
Pongo
sp. (Orangutan) : ENSPPYT00000008510
Tetraodon
sp. (Tetraodon) : GSTENT00026141001
Takifugu
sp. (Fugu) : SINFRUT00000176623
Monodelphis
sp. (Opossum) : XM_001368876
Equus
sp. (Horse) : XM_001502118
Pan
sp. (Chimpanzee) : XM_523328
Pan
sp. (Chimpanzee) : XR_020012
HIX0013327
HIT000031939
(
BC004433
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,488,600 - 28,503,381 (14,782)
query : 1 - 1,671 (1,671/1,689)
16 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003492 : Batten's disease protein Cln3
GO :
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000397510 (
NM_001042432
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,488,600 - 28,503,623 (15,024)
query : 1 - 1,913 (1,913/1,915)
16 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 0.999
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000197137 (
NM_000086
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,488,600 - 28,503,403 (14,804)
query : 1 - 1,877 (1,877/1,879)
15 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 0.999
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000682373 (
ENST00000569430
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,488,600 - 28,506,855 (18,256)
query : 1 - 2,374 (2,374/2,374)
17 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000313465 (
ENST00000360019
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,488,600 - 28,503,623 (15,024)
query : 1 - 1,913 (1,913/1,913)
16 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000313434 (
ENST00000359984
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,488,600 - 28,503,403 (14,804)
query : 1 - 1,877 (1,877/1,877)
15 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000015576
(
AK090709
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,488,601 - 28,505,897 (17,297)
query : 1 - 3,081 (3,081/3,081)
15 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003492 : Batten's disease protein Cln3
GO :
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31.5, extr_plas 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000677013 (
ENST00000563874
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,488,601 - 28,505,897 (17,297)
query : 1 - 3,081 (3,081/3,081)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31.5, extr_plas 16.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000308893 (
ENST00000354630
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,488,601 - 28,503,381 (14,781)
query : 1 - 1,619 (1,619/1,619)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000309613 (
ENST00000355477
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,488,601 - 28,503,381 (14,781)
query : 1 - 1,526 (1,526/1,526)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000128383 (
ENST00000333496
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,488,601 - 28,503,363 (14,763)
query : 1 - 1,580 (1,580/1,580)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000496651
(
AK302027
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,488,601 - 28,503,363 (14,763)
query : 1 - 1,580 (1,580/1,580)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003492 : Batten's disease protein Cln3
GO :
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000488694
(
AK294070
)
(Battenin; Protein CLN3; Precursor;)
genome : 28,488,601 - 28,503,326 (14,726)
query : 1 - 1,721 (1,721/1,721)
14 exons
identity = 0.999
3'(1.000;0.997)5'
coverage = 1.000
InterPro :
IPR003492 : Batten's disease protein Cln3
GO :
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000219274
(
U32680
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,488,601 - 28,503,216 (14,616)
query : 2 - 1,689 (1,688/1,689)
15 exons
identity = 0.998
3'(1.000;1.000;1.000)5'
coverage = 0.999
InterPro :
IPR003492 : Batten's disease protein Cln3
GO :
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000311609 (
ENST00000357806
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,488,612 - 28,503,304 (14,693)
query : 1 - 1,469 (1,469/1,469)
12 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31.5, extr_plas 16.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000680955 (
ENST00000567963
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,488,650 - 28,503,376 (14,727)
query : 1 - 1,325 (1,325/1,325)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31.5, extr_plas 16.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000311650 (
ENST00000357857
)
(Battenin; Protein CLN3; Precursor;)
genome : 28,488,650 - 28,503,174 (14,525)
query : 1 - 1,519 (1,519/1,519)
14 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000492314
(
AK297690
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,488,682 - 28,503,344 (14,663)
query : 2 - 1,578 (1,577/1,578)
13 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 0.999
InterPro :
IPR003492 : Batten's disease protein Cln3
GO :
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 26, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000479020 (
ENST00000395653
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,488,682 - 28,503,344 (14,663)
query : 1 - 1,577 (1,577/1,577)
13 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 26, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000062355
(
AF015593
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,488,803 - 28,503,134 (14,332)
query : 1 - 1,405 (1,405/1,406)
15 exons
identity = 0.999
3'(1.000;1.000;1.000)5'
coverage = 0.999
InterPro :
IPR003492 : Batten's disease protein Cln3
GO :
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000062357
(
AF015595
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,488,804 - 28,503,177 (14,374)
query : 1 - 1,224 (1,224/1,224)
13 exons
identity = 0.999
3'(1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003492 : Batten's disease protein Cln3
GO :
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000681401 (
ENST00000568422
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,488,804 - 28,503,177 (14,374)
query : 1 - 1,224 (1,224/1,224)
13 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000062360
(
AF015598
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,488,815 - 28,503,180 (14,366)
query : 6 - 1,147 (1,142/1,147)
12 exons
identity = 0.996
3'(0.990;1.000;1.000)5'
coverage = 0.996
InterPro :
IPR003492 : Batten's disease protein Cln3
GO :
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31.5, extr_plas 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000431868
(
AK313002
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,488,837 - 28,503,395 (14,559)
query : 1 - 1,448 (1,448/1,448)
16 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003492 : Batten's disease protein Cln3
GO :
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000066237
(
AF077956
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,488,837 - 28,503,080 (14,244)
query : 1 - 1,317 (1,317/1,317)
15 exons
identity = 0.999
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003492 : Batten's disease protein Cln3
GO :
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000066238
(
AF077957
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,488,837 - 28,503,080 (14,244)
query : 1 - 1,317 (1,317/1,317)
15 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003492 : Batten's disease protein Cln3
GO :
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000066239
(
AF077958
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,488,837 - 28,503,080 (14,244)
query : 1 - 1,317 (1,317/1,317)
15 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003492 : Batten's disease protein Cln3
GO :
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000066240
(
AF077959
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,488,837 - 28,503,080 (14,244)
query : 1 - 1,317 (1,317/1,317)
15 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003492 : Batten's disease protein Cln3
GO :
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000066241
(
AF077960
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,488,837 - 28,503,080 (14,244)
query : 1 - 1,173 (1,173/1,173)
14 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003492 : Batten's disease protein Cln3
GO :
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000066242
(
AF077961
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,488,837 - 28,503,080 (14,244)
query : 1 - 1,317 (1,317/1,317)
15 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003492 : Batten's disease protein Cln3
GO :
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000066243
(
AF077962
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,488,837 - 28,503,080 (14,244)
query : 1 - 1,317 (1,317/1,317)
15 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003492 : Batten's disease protein Cln3
GO :
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000066244
(
AF077963
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,488,837 - 28,503,080 (14,244)
query : 1 - 1,445 (1,445/1,445)
14 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003492 : Batten's disease protein Cln3
GO :
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31.5, extr_plas 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000066245
(
AF077964
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,488,837 - 28,503,080 (14,244)
query : 1 - 1,228 (1,228/1,228)
12 exons
identity = 0.999
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003492 : Batten's disease protein Cln3
GO :
0016020 : Cellular Component : membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
plas 31.5, extr_plas 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000066246
(
AF077965
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,488,837 - 28,503,080 (14,244)
query : 1 - 1,109 (1,109/1,109)
13 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003492 : Batten's disease protein Cln3
GO :
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31.5, extr_plas 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000066247
(
AF077966
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,488,837 - 28,503,080 (14,244)
query : 1 - 1,317 (1,317/1,317)
15 exons
identity = 0.998
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003492 : Batten's disease protein Cln3
GO :
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000066248
(
AF077967
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,488,837 - 28,503,080 (14,244)
query : 1 - 1,237 (1,237/1,237)
14 exons
identity = 0.998
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003492 : Batten's disease protein Cln3
GO :
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15, nucl 11, cyto 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000066249
(
AF077968
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,488,837 - 28,503,080 (14,244)
query : 1 - 1,225 (1,225/1,225)
14 exons
identity = 0.996
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003492 : Batten's disease protein Cln3
GO :
0016020 : Cellular Component : membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
plas 31.5, extr_plas 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000066250
(
AF077969
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,488,837 - 28,503,080 (14,244)
query : 1 - 931 (931/931)
11 exons
identity = 0.999
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 10, nucl 6, cyto_mito 6, plas 4, pero 4,
mito_nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000066251
(
AF077970
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,488,837 - 28,503,080 (14,244)
query : 1 - 931 (931/931)
11 exons
identity = 0.999
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 10, nucl 6, cyto_mito 6, plas 4, pero 4,
mito_nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000066252
(
AF077971
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,488,837 - 28,503,080 (14,244)
query : 1 - 1,317 (1,317/1,317)
15 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003492 : Batten's disease protein Cln3
GO :
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000066253
(
AF077972
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,488,837 - 28,503,080 (14,244)
query : 1 - 1,266 (1,266/1,266)
14 exons
identity = 0.999
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003492 : Batten's disease protein Cln3
GO :
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000066254
(
AF077973
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,488,837 - 28,503,080 (14,244)
query : 1 - 1,286 (1,286/1,286)
12 exons
identity = 0.999
3'(1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003492 : Batten's disease protein Cln3
GO :
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 16, mito 9, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000066265
(
AF078169
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,488,837 - 28,503,080 (14,244)
query : 1 - 1,317 (1,317/1,317)
15 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003492 : Batten's disease protein Cln3
GO :
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000674905 (
ENST00000561689
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,488,837 - 28,503,080 (14,244)
query : 1 - 1,286 (1,286/1,286)
12 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 16, mito 9, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000678231 (
ENST00000565140
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,488,837 - 28,503,080 (14,244)
query : 1 - 1,225 (1,225/1,225)
14 exons
identity = 0.997
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
plas 31.5, extr_plas 16.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000678401 (
ENST00000565316
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,488,837 - 28,503,080 (14,244)
query : 1 - 1,266 (1,266/1,266)
14 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000679107 (
ENST00000566057
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,488,837 - 28,503,080 (14,244)
query : 1 - 931 (931/931)
11 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 10, nucl 6, cyto_mito 6, plas 4, pero 4,
mito_nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000681064 (
ENST00000568076
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,488,837 - 28,503,080 (14,244)
query : 1 - 1,228 (1,228/1,228)
12 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
plas 31.5, extr_plas 16.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000681431 (
ENST00000568452
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,488,837 - 28,503,080 (14,244)
query : 1 - 1,445 (1,445/1,445)
14 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31.5, extr_plas 16.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000681982 (
ENST00000569030
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,488,837 - 28,503,080 (14,244)
query : 1 - 1,109 (1,109/1,109)
13 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31.5, extr_plas 16.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000310977 (
ENST00000357076
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,491,051 - 28,503,381 (12,331)
query : 1 - 879 (879/879)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31.5, extr_plas 16.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000062356
(
AF015594
)
(Battenin; Protein CLN3; Precursor;)
genome : 28,493,434 - 28,503,174 (9,741)
query : 1 - 1,063 (1,063/1,063)
12 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003492 : Batten's disease protein Cln3
GO :
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000062362
(
AF015600
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,493,471 - 28,503,180 (9,710)
query : 7 - 741 (735/741)
9 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 0.992
InterPro :
IPR003492 : Batten's disease protein Cln3
GO :
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 11, plas 6, nucl 5, mito 4, pero 4, mito_pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000681533 (
ENST00000568558
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,493,471 - 28,503,180 (9,710)
query : 1 - 735 (735/735)
9 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 11, plas 6, nucl 5, mito 4, pero 4, mito_pero 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000681450 (
ENST00000568472
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,493,485 - 28,503,094 (9,610)
query : 1 - 477 (477/477)
7 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 15, extr 6, plas 3, pero 3, cyto 2, lyso 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000496762
(
AK302138
)
(Battenin; Protein CLN3; Precursor;)
genome : 28,493,499 - 28,503,391 (9,893)
query : 1 - 1,159 (1,159/1,159)
12 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003492 : Batten's disease protein Cln3
GO :
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000677690 (
ENST00000564574
)
(Battenin; Protein CLN3; Precursor;)
genome : 28,493,499 - 28,503,391 (9,893)
query : 1 - 1,159 (1,159/1,159)
12 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000062363
(
AF015601
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,493,677 - 28,503,179 (9,503)
query : 1 - 577 (577/577)
7 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003492 : Batten's disease protein Cln3
GO :
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 12, extr 10, cyto 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000681474 (
ENST00000568497
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,493,677 - 28,503,179 (9,503)
query : 1 - 577 (577/577)
7 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 12, extr 10, cyto 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000062359
(
AF015597
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,493,798 - 28,503,153 (9,356)
query : 1 - 762 (762/762)
9 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003492 : Batten's disease protein Cln3
GO :
0016020 : Cellular Component : membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
plas 31.5, extr_plas 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000680503 (
ENST00000567495
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,493,798 - 28,503,153 (9,356)
query : 1 - 762 (762/762)
9 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
plas 31.5, extr_plas 16.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000488874
(
AK294250
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,493,824 - 28,503,393 (9,570)
query : 1 - 1,009 (1,009/1,009)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003492 : Batten's disease protein Cln3
GO :
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15, nucl 11, cyto 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000679851 (
ENST00000566824
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,493,824 - 28,503,393 (9,570)
query : 1 - 1,009 (1,009/1,009)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15, nucl 11, cyto 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000490124
(
AK295500
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,493,833 - 28,503,158 (9,326)
query : 17 - 1,198 (1,182/1,198)
9 exons
identity = 0.999
3'(1.000;1.000)5'
coverage = 0.987
InterPro :
IPR003492 : Batten's disease protein Cln3
GO :
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30.5, extr_plas 16
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000679132 (
ENST00000566083
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,493,833 - 28,503,158 (9,326)
query : 1 - 1,182 (1,182/1,182)
9 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30.5, extr_plas 16
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000062361
(
AF015599
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,493,834 - 28,503,148 (9,315)
query : 1 - 569 (569/569)
7 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003492 : Batten's disease protein Cln3
GO :
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 13, nucl 12, cyto_nucl 10, cyto 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000678838 (
ENST00000565778
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,493,834 - 28,503,148 (9,315)
query : 1 - 569 (569/569)
7 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 13, nucl 12, cyto_nucl 10, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000062364
(
AF015602
)
(Battenin; Protein CLN3; Precursor;)
genome : 28,493,837 - 28,503,147 (9,311)
query : 1 - 461 (461/461)
6 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
InterPro :
IPR003492 : Batten's disease protein Cln3
GO :
0016020 : Cellular Component : membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, nucl 8, cyto 7.5, extr_plas 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000678140 (
ENST00000565047
)
(Battenin; Protein CLN3; Precursor;)
genome : 28,493,837 - 28,503,147 (9,311)
query : 1 - 461 (461/461)
6 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, nucl 8, cyto 7.5, extr_plas 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000678752 (
ENST00000565688
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,495,338 - 28,503,384 (8,047)
query : 1 - 650 (650/650)
7 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30.5, extr_plas 16
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000062358
(
AF015596
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,497,671 - 28,503,132 (5,462)
query : 1 - 495 (495/495)
5 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003492 : Batten's disease protein Cln3
GO :
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 25, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000674727 (
ENST00000561505
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,497,683 - 28,503,370 (5,688)
query : 1 - 609 (609/609)
7 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 18, mito 11
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000681422 (
ENST00000568443
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,498,983 - 28,503,623 (4,641)
query : 1 - 886 (886/886)
5 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 9, nucl 7, pero 6, mito 4, E.R. 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000066264
(
AF078168
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,499,942 - 28,503,133 (3,192)
query : 1 - 470 (470/470)
3 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003492 : Batten's disease protein Cln3
GO :
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 18.5, cyto_nucl 11, extr 9, cyto 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000680801 (
ENST00000567804
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,500,611 - 28,504,094 (3,484)
query : 1 - 557 (557/557)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 17, cyto_nucl 11.5, extr 10, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000678323 (
ENST00000565236
)
(Battenin; Batten disease protein; Protein CLN3; Precursor;)
genome : 28,500,635 - 28,503,363 (2,729)
query : 1 - 582 (582/582)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto_nucl 8.5, cyto 7.5, nucl 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000679090 (
ENST00000566040
)
(Apolipoprotein B receptor; Apolipoprotein B-100 receptor; Apolipoprotein B-48 receptor; Apolipoprotein B48 receptor; apoB-48R;)
genome : 28,503,426 - 28,506,896 (3,471)
query : 1 - 544 (544/544)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, nucl 3, cyto 2, mito 2, cyto_mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000679508 (
ENST00000566472
)
(Conserved hypothetical protein.)
genome : 28,503,458 - 28,505,307 (1,850)
query : 1 - 551 (551/551)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000680179 (
ENST00000567160
)
(Apolipoprotein B receptor; Apolipoprotein B-100 receptor; Apolipoprotein B-48 receptor; Apolipoprotein B48 receptor; apoB-48R;)
genome : 28,503,511 - 28,506,866 (3,356)
query : 1 - 616 (616/616)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013327
HIT000679843 (
ENST00000566816
)
(Apolipoprotein B receptor; Apolipoprotein B-100 receptor; Apolipoprotein B-48 receptor; Apolipoprotein B48 receptor; apoB-48R;)
genome : 28,504,875 - 28,506,877 (2,003)
query : 1 - 570 (570/570)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, mito 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013327)
HIX0013328
HIT000207388 (
NM_018690
)
(Apolipoprotein B receptor; Apolipoprotein B-100 receptor; Apolipoprotein B-48 receptor; Apolipoprotein B48 receptor; apoB-48R;)
genome : 28,505,970 - 28,510,291 (4,322)
query : 1 - 3,792 (3,792/3,792)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31.5, cyto_nucl 16.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013328)
HIX0013328
HIT000677935 (
ENST00000564831
)
(Apolipoprotein B receptor; Apolipoprotein B-100 receptor; Apolipoprotein B-48 receptor; Apolipoprotein B48 receptor; apoB-48R;)
genome : 28,505,970 - 28,510,291 (4,322)
query : 1 - 3,792 (3,792/3,792)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31.5, cyto_nucl 16.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013328)
HIX0013328
HIT000071161
(
AF141332
)
(Apolipoprotein B receptor; Apolipoprotein B-100 receptor; Apolipoprotein B-48 receptor; Apolipoprotein B48 receptor; apoB-48R;)
genome : 28,505,993 - 28,510,273 (4,281)
query : 1 - 3,724 (3,724/3,744)
4 exons
identity = 0.990
5'(1.000;0.988;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR026158 : Apolipoprotein B receptor
GO :
0006869 : Biological Process : lipid transport
0030228 : Molecular Function : lipoprotein particle receptor activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31.5, cyto_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013328)
HIX0013328
HIT000071162
(
AF141334
)
(Apolipoprotein B receptor; Apolipoprotein B-100 receptor; Apolipoprotein B-48 receptor; Apolipoprotein B48 receptor; apoB-48R;)
genome : 28,505,993 - 28,510,273 (4,281)
query : 1 - 3,724 (3,724/3,744)
4 exons
identity = 0.989
5'(1.000;0.987;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR026158 : Apolipoprotein B receptor
GO :
0006869 : Biological Process : lipid transport
0030228 : Molecular Function : lipoprotein particle receptor activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31.5, cyto_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013328)
HIX0013328
HIT000125544 (
ENST00000328423
)
(Apolipoprotein B receptor.)
genome : 28,505,993 - 28,510,242 (4,250)
query : 1 - 3,220 (3,220/3,220)
4 exons
identity = 0.992
5'(1.000;0.991;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30, cyto_nucl 17
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013328)
HIX0013328
HIT000388099
(
BC119786
)
Representative transcript
(Apolipoprotein B receptor; Apolipoprotein B-100 receptor; Apolipoprotein B-48 receptor; Apolipoprotein B48 receptor; apoB-48R;)
genome : 28,505,993 - 28,509,963 (3,971)
query : 1 - 3,414 (3,414/3,414)
4 exons
identity = 0.990
5'(0.985;0.989;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR026158 : Apolipoprotein B receptor
GO :
0006869 : Biological Process : lipid transport
0030228 : Molecular Function : lipoprotein particle receptor activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31.5, cyto_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013328)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK156422
Pongo
sp. (Orangutan) : ENSPPYT00000008512
Rattus
sp. (Rat) : ENSRNOT00000023555
Macaca
sp. (Macaque) : XM_001103862
Pan
sp. (Chimpanzee) : XM_001147586
Equus
sp. (Horse) : XM_001496643
Canis
sp. (Dog) : XM_547070
Bos
sp. (Cow) : XM_580972
HIX0013328
HIT000388101
(
BC119788
)
(Apolipoprotein B receptor family protein.)
genome : 28,505,993 - 28,509,963 (3,971)
query : 1 - 3,209 (3,209/3,209)
5 exons
identity = 0.998
5'(1.000;1.000;0.998;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR026158 : Apolipoprotein B receptor
GO :
0006869 : Biological Process : lipid transport
0030228 : Molecular Function : lipoprotein particle receptor activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013328)
HIX0013328
HIT000529216 (
ENST00000431282
)
(Apolipoprotein B receptor; Apolipoprotein B-100 receptor; Apolipoprotein B-48 receptor; Apolipoprotein B48 receptor; apoB-48R;)
genome : 28,505,993 - 28,509,963 (3,971)
query : 1 - 3,414 (3,414/3,414)
4 exons
identity = 0.992
5'(1.000;0.991;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31.5, cyto_nucl 16.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013328)
HIX0013328
HIT000008397
(
AK025123
)
(Apolipoprotein B receptor; Apolipoprotein B-100 receptor; Apolipoprotein B-48 receptor; Apolipoprotein B48 receptor; apoB-48R;)
genome : 28,508,498 - 28,510,291 (1,794)
query : 21 - 1,644 (1,624/1,660)
3 exons
identity = 0.998
5'(0.999;1.000;0.996)3'
coverage = 0.994
InterPro :
IPR026158 : Apolipoprotein B receptor
GO :
0006869 : Biological Process : lipid transport
0030228 : Molecular Function : lipoprotein particle receptor activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31.5, cyto_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013328)
HIX0013328
HIT000447423
(
DQ580892
)
(Non-protein coding transcript.)
genome : 28,508,618 - 28,508,647 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013328)
HIX0013328
HIT000082120
(
AK075085
)
(Apolipoprotein B receptor; Apolipoprotein B-100 receptor; Apolipoprotein B-48 receptor; Apolipoprotein B48 receptor; apoB-48R;)
genome : 28,508,655 - 28,510,277 (1,623)
query : 1 - 980 (980/980)
3 exons
identity = 0.999
5'(0.998;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR026158 : Apolipoprotein B receptor
GO :
0006869 : Biological Process : lipid transport
0030228 : Molecular Function : lipoprotein particle receptor activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013328)
HIX0013328
HIT000455202
(
DQ588671
)
(Non-protein coding transcript.)
genome : 28,508,730 - 28,508,759 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013328)
HIX0038580
HIT000260385
(
BC062422
)
Representative transcript
(Interleukin-27 subunit alpha; IL-27 subunit alpha; IL-27-A; IL27-A; p28; Precursor;)
genome : 28,510,683 - 28,518,155 (7,473)
query : 4 - 1,047 (1,044/1,077)
5 exons
identity = 0.998
3'(0.998;1.000;1.000;0.994;1.000)5'
coverage = 0.995
InterPro :
IPR026207 : Interleukin-27 alpha
GO :
0042129 : Biological Process : regulation of T cell proliferation
0045523 : Molecular Function : interleukin-27 receptor binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 27, pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0038580)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK152114
Canis
sp. (Dog) : ENSCAFT00000027127
Equus
sp. (Horse) : ENSECAT00000015671
Pongo
sp. (Orangutan) : ENSPPYT00000008513
Rattus
sp. (Rat) : ENSRNOT00000025950
Pan
sp. (Chimpanzee) : XM_001138224
Monodelphis
sp. (Opossum) : XM_001368806
Bos
sp. (Cow) : XM_866578
HIX0038580
HIT000213261 (
NM_145659
)
(Interleukin-27 subunit alpha; IL-27 subunit alpha; IL-27-A; IL27-A; p28; Precursor;)
genome : 28,510,683 - 28,518,155 (7,473)
query : 1 - 1,044 (1,044/1,044)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 27, pero 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0038580)
HIX0038580
HIT000310822 (
ENST00000356897
)
(Interleukin-27 subunit alpha; IL-27 subunit alpha; IL-27-A; IL27-A; p28; Precursor;)
genome : 28,510,683 - 28,518,155 (7,473)
query : 1 - 1,044 (1,044/1,044)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 27, pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0038580)
HIX0038580
HIT000084400
(
AY099296
)
(Interleukin-27 subunit alpha; IL-27 subunit alpha; IL-27-A; IL27-A; p28; Precursor;)
genome : 28,510,972 - 28,518,132 (7,161)
query : 1 - 732 (732/732)
5 exons
identity = 0.997
3'(1.000;0.994;1.000;0.994;1.000)5'
coverage = 1.000
InterPro :
IPR026207 : Interleukin-27 alpha
GO :
0042129 : Biological Process : regulation of T cell proliferation
0045523 : Molecular Function : interleukin-27 receptor binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 27, pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0038580)
HIX0038580
HIT000681063 (
ENST00000568075
)
(Interleukin-27 subunit alpha; IL-27 subunit alpha; IL-27-A; IL27-A; p28; Precursor;)
genome : 28,513,295 - 28,523,372 (10,078)
query : 1 - 657 (657/657)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0038580)
HIX0020803
HIT000124014 (
ENST00000324873
)
(Nuclear protein 1; Candidate of metastasis 1; Protein p8;)
genome : 28,548,606 - 28,550,495 (1,890)
query : 1 - 914 (914/914)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020803)
HIX0020803
HIT000204130 (
NM_012385
)
(Nuclear protein 1; Candidate of metastasis 1; Protein p8;)
genome : 28,548,662 - 28,550,495 (1,834)
query : 1 - 858 (858/884)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020803)
HIX0020803
HIT000397545 (
NM_001042483
)
(Nuclear protein 1 isoform a.)
genome : 28,548,662 - 28,550,495 (1,834)
query : 1 - 912 (912/938)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24.5, cyto_nucl 14.5, cyto 3.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020803)
HIX0020803
HIT000065643
(
AF069073
)
Representative transcript
(Nuclear protein 1; Candidate of metastasis 1; Protein p8;)
genome : 28,548,662 - 28,550,330 (1,669)
query : 1 - 693 (693/719)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 0.999
InterPro :
IPR018792 : Nuclear phosphoprotein p8, DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020803)
Ortholog candidate ( ->
Evola
)
Rattus
sp. (Rat) : AF014503
Mus
sp. (Mouse) : AK009572
Bos
sp. (Cow) : BC103251
Tetraodon
sp. (Tetraodon) : CR661268
Equus
sp. (Horse) : ENSECAT00000015511
Monodelphis
sp. (Opossum) : ENSMODT00000019867
Pongo
sp. (Orangutan) : ENSPPYT00000008514
Takifugu
sp. (Fugu) : SINFRUT00000180134
Macaca
sp. (Macaque) : XM_001110134
Pan
sp. (Chimpanzee) : XM_001138670
Canis
sp. (Dog) : XM_536921
HIX0020803
HIT000030889
(
BC002434
)
(Nuclear protein 1; Candidate of metastasis 1; Protein p8;)
genome : 28,548,687 - 28,550,275 (1,589)
query : 1 - 613 (613/658)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR018792 : Nuclear phosphoprotein p8, DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020803)
HIX0020803
HIT000071041
(
AF135266
)
(Nuclear protein 1; Candidate of metastasis 1; Protein p8;)
genome : 28,548,682 - 28,550,283 (1,602)
query : 4 - 629 (626/644)
3 exons
identity = 0.998
3'(0.997;1.000;1.000)5'
coverage = 0.994
InterPro :
IPR018792 : Nuclear phosphoprotein p8, DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020803)
HIX0020803
HIT000680650 (
ENST00000567646
)
(Nuclear protein 1 isoform b.)
genome : 28,548,828 - 28,550,272 (1,445)
query : 1 - 598 (598/598)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16, mito 10, extr 5, E.R._mito 5, cyto_mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020803)
HIX0020803
HIT000479008 (
ENST00000395641
)
(Nuclear protein 1 isoform a.)
genome : 28,548,858 - 28,550,329 (1,472)
query : 1 - 550 (550/550)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24.5, cyto_nucl 14.5, cyto 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020803)
HIX0020803
HIT000431001
(
AK312135
)
(Nuclear protein 1; Candidate of metastasis 1; Protein p8;)
genome : 28,549,340 - 28,550,278 (939)
query : 1 - 299 (299/299)
2 exons
identity = 0.997
3'(0.993;1.000)5'
coverage = 1.000
InterPro :
IPR018792 : Nuclear phosphoprotein p8, DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27.5, cyto_nucl 15.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020803)
HIX0020803
HIT000099816
(
BT006896
)
(Nuclear protein 1; Candidate of metastasis 1; Protein p8;)
genome : 28,549,342 - 28,550,228 (887)
query : 1 - 247 (247/249)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 0.992
InterPro :
IPR018792 : Nuclear phosphoprotein p8, DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020803)
HIX0020803
HIT000269013
(
CR542144
)
(Nuclear protein 1; Candidate of metastasis 1; Protein p8;)
genome : 28,549,340 - 28,550,228 (889)
query : 1 - 249 (249/249)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
InterPro :
IPR018792 : Nuclear phosphoprotein p8, DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020803)
HIX0020251
HIT000677793 (
ENST00000564682
)
(SAGA-associated factor 29 homolog.)
genome : 28,565,236 - 28,596,724 (31,489)
query : 1 - 764 (764/764)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 10, cyto 9, cyto_nucl 8.5, nucl 6, cysk 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020251)
HIX0020251
HIT000682519 (
ENST00000569581
)
(SAGA-associated factor 29 homolog.)
genome : 28,565,241 - 28,600,741 (35,501)
query : 1 - 738 (738/738)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, cyto_nucl 12.8333, cyto_plas 11, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020251)
HIX0020251
HIT000121142 (
ENST00000317058
)
(SAGA-associated factor 29 homolog; Coiled-coil domain-containing protein 101;)
genome : 28,565,247 - 28,603,111 (37,865)
query : 1 - 1,153 (1,153/1,153)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23, nucl 5, mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020251)
HIX0020251
HIT000212381 (
NM_138414
)
(SAGA-associated factor 29 homolog; Coiled-coil domain-containing protein 101;)
genome : 28,565,249 - 28,603,111 (37,863)
query : 1 - 1,151 (1,151/1,160)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23, nucl 5, mito 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020251)
HIX0020251
HIT000035581
(
BC011981
)
Representative transcript
(SAGA-associated factor 29 homolog; Coiled-coil domain-containing protein 101;)
genome : 28,565,257 - 28,603,109 (37,853)
query : 1 - 1,140 (1,140/1,157)
10 exons
identity = 0.999
5'(0.994;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 0.999
InterPro :
IPR010750 : SGF29 tudor-like domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23, nucl 5, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020251)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB168892
Mus
sp. (Mouse) : AK139102
Danio
sp. (Zebrafish) : BC083421
Bos
sp. (Cow) : BC109630
Tetraodon
sp. (Tetraodon) : CR647311
Tetraodon
sp. (Tetraodon) : CR731391
Equus
sp. (Horse) : ENSECAT00000011950
Gallus
sp. (Chicken) : ENSGALT00000037849
Pongo
sp. (Orangutan) : ENSPPYT00000008515
Takifugu
sp. (Fugu) : SINFRUT00000180717
Rattus
sp. (Rat) : XM_001077352
Monodelphis
sp. (Opossum) : XM_001364556
Pan
sp. (Chimpanzee) : XM_510901
Canis
sp. (Dog) : XM_854202
HIX0020251
HIT000013622
(
AK057008
)
(SAGA-associated factor 29 homolog; Coiled-coil domain-containing protein 101;)
genome : 28,565,290 - 28,603,110 (37,821)
query : 1 - 1,109 (1,109/1,109)
10 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.994;1.000)3'
coverage = 1.000
InterPro :
IPR010750 : SGF29 tudor-like domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23, nucl 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020251)
HIX0020251
HIT000680570 (
ENST00000567564
)
(SAGA-associated factor 29 homolog.)
genome : 28,565,293 - 28,601,762 (36,470)
query : 1 - 788 (788/788)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 25.5, mito_pero 14.5, pero 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020251)
HIX0020251
HIT000680456 (
ENST00000567447
)
(SAGA-associated factor 29 homolog.)
genome : 28,601,438 - 28,603,111 (1,674)
query : 1 - 726 (726/726)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto 10.5, cyto_nucl 9, nucl 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020251)
HIX0020251
HIT000677160 (
ENST00000564023
)
(SAGA-associated factor 29 homolog.)
genome : 28,601,706 - 28,603,109 (1,404)
query : 1 - 354 (354/354)
3 exons
identity = 0.983
5'(1.000;0.941;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21, mito 5, extr 3, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020251)
HIX0020251
HIT000679000 (
ENST00000565945
)
(SAGA-associated factor 29 homolog.)
genome : 28,601,921 - 28,603,109 (1,189)
query : 1 - 535 (535/535)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15, mito 12, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020251)
HIX0223021
HIT000091122
(
BC025763
)
(Sulfotransferase 1A2.)
genome : 28,603,265 - 28,608,368 (5,104)
query : 1 - 1,990 (1,990/2,028)
4 exons
identity = 0.999
3'(0.995;1.000;1.000;0.999)5'
coverage = 1.000
EC number :
EC 2.8.2.1
KEGG pathway :
00920 : Sulfur metabolism (30)
01120 : Microbial metabolism in diverse environments (468)
InterPro :
IPR000863 : Sulfotransferase domain
GO :
0008146 : Molecular Function : sulfotransferase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, nucl 7, extr 2, cysk 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0223021)
HIX0223021
HIT000198060 (
NM_001054
)
(Sulfotransferase domain containing protein.)
genome : 28,603,265 - 28,608,391 (5,127)
query : 1 - 1,050 (1,050/1,075)
8 exons
identity = 0.999
3'(0.995;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
EC number :
EC 2.8.2.1
KEGG pathway :
00920 : Sulfur metabolism (30)
01120 : Microbial metabolism in diverse environments (468)
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 26, nucl 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0223021)
HIX0223021
HIT000317947 (
NM_177528
)
(Sulfotransferase domain containing protein.)
genome : 28,603,265 - 28,607,801 (4,537)
query : 1 - 1,323 (1,323/1,348)
8 exons
identity = 0.999
3'(0.995;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
EC number :
EC 2.8.2.1
KEGG pathway :
00920 : Sulfur metabolism (30)
01120 : Microbial metabolism in diverse environments (468)
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 26, nucl 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0223021)
HIX0223021
HIT000099497
(
BC052280
)
(Sulfotransferase 1A2.)
genome : 28,603,265 - 28,607,695 (4,431)
query : 1 - 1,539 (1,539/1,564)
6 exons
identity = 0.999
3'(0.995;1.000;1.000;1.000;1.000;0.998)5'
coverage = 1.000
EC number :
EC 2.8.2.1
KEGG pathway :
00920 : Sulfur metabolism (30)
01120 : Microbial metabolism in diverse environments (468)
InterPro :
IPR000863 : Sulfotransferase domain
GO :
0008146 : Molecular Function : sulfotransferase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13, nucl 12.5, cyto 10.5, extr 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0223021)
HIX0223021
HIT000129765 (
ENST00000335715
)
(Sulfotransferase domain containing protein.)
genome : 28,603,264 - 28,608,430 (5,167)
query : 1 - 1,090 (1,090/1,090)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 25, nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0223021)
HIX0223021
HIT000632236 (
ENST00000533150
)
(Sulfotransferase domain containing protein.)
genome : 28,603,264 - 28,608,368 (5,105)
query : 1 - 1,991 (1,991/1,991)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 13.5, nucl 7.5, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0223021)
HIX0223021
HIT000633172 (
ENST00000534108
)
(Sulfotransferase domain containing protein.)
genome : 28,603,264 - 28,607,695 (4,432)
query : 1 - 1,540 (1,540/1,540)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13, nucl 12.5, cyto 10.5, extr 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0223021)
HIX0223021
HIT000218910
(
U28169
)
Representative transcript
(Sulfotransferase 1A2; ST1A2; EC=2.8.2.1; Aryl sulfotransferase 2; Phenol sulfotransferase 2; Phenol-sulfating phenol sulfotransferase 2; P-PST 2;)
genome : 28,603,265 - 28,608,386 (5,122)
query : 1 - 1,045 (1,045/1,045)
8 exons
identity = 0.996
3'(0.985;1.000;1.000;1.000;1.000;1.000;1.000;
0.986)5'
coverage = 1.000
EC number :
EC 2.8.2.1
KEGG pathway :
00920 : Sulfur metabolism (30)
01120 : Microbial metabolism in diverse environments (468)
InterPro :
IPR000863 : Sulfotransferase domain
GO :
0008146 : Molecular Function : sulfotransferase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 26, nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0223021)
HIX0223021
HIT000478997 (
ENST00000395630
)
(Sulfotransferase domain containing protein.)
genome : 28,603,266 - 28,607,801 (4,536)
query : 1 - 1,322 (1,322/1,322)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 25, nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0223021)
HIX0223021
HIT000323662
(
X78282
)
(Sulfotransferase domain containing protein.)
genome : 28,603,278 - 28,607,251 (3,974)
query : 1 - 959 (959/959)
7 exons
identity = 0.997
3'(0.995;1.000;1.000;1.000;0.990;1.000;0.993)5'
coverage = 1.000
EC number :
EC 2.8.2.1
KEGG pathway :
00920 : Sulfur metabolism (30)
01120 : Microbial metabolism in diverse environments (468)
InterPro :
IPR000863 : Sulfotransferase domain
GO :
0008146 : Molecular Function : sulfotransferase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, mito 11, cyto_nucl 11
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0223021)
HIX0223021
HIT000387180
(
BC113727
)
(Sulfotransferase 1A2; ST1A2; EC=2.8.2.1; Aryl sulfotransferase 2; Phenol sulfotransferase 2; Phenol-sulfating phenol sulfotransferase 2; P-PST 2;)
genome : 28,603,327 - 28,608,386 (5,060)
query : 1 - 983 (983/983)
8 exons
identity = 0.999
3'(0.993;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
EC number :
EC 2.8.2.1
KEGG pathway :
00920 : Sulfur metabolism (30)
01120 : Microbial metabolism in diverse environments (468)
InterPro :
IPR000863 : Sulfotransferase domain
GO :
0008146 : Molecular Function : sulfotransferase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 26, nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0223021)
HIX0223021
HIT000387182
(
BC113729
)
(Sulfotransferase 1A2; ST1A2; EC=2.8.2.1; Aryl sulfotransferase 2; Phenol sulfotransferase 2; Phenol-sulfating phenol sulfotransferase 2; P-PST 2;)
genome : 28,603,327 - 28,608,386 (5,060)
query : 1 - 983 (983/983)
8 exons
identity = 0.999
3'(0.993;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
EC number :
EC 2.8.2.1
KEGG pathway :
00920 : Sulfur metabolism (30)
01120 : Microbial metabolism in diverse environments (468)
InterPro :
IPR000863 : Sulfotransferase domain
GO :
0008146 : Molecular Function : sulfotransferase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 26, nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0223021)
HIX0223021
HIT000625595 (
ENST00000526384
)
(Sulfotransferase domain containing protein.)
genome : 28,604,591 - 28,607,616 (3,026)
query : 1 - 773 (773/773)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 26.5, cyto_nucl 15, nucl 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0223021)
HIX0173349
HIT000447580_03
(
DQ581049
)
Representative transcript
(Non-protein coding transcript.)
genome : 28,610,383 - 28,610,412 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173349)
HIX0017846
HIT000059903
(
AB062428
)
(Sulfotransferase 1A1; ST1A1; EC=2.8.2.1; Aryl sulfotransferase 1; HAST1/HAST2; Phenol sulfotransferase 1; Phenol-sulfating phenol sulfotransferase 1; P-PST 1; ST1A3; Thermostable phenol sulfotransferase; Ts-PST;)
genome : 28,616,529 - 28,620,232 (3,704)
query : 1 - 1,557 (1,557/1,571)
7 exons
identity = 0.994
3'(0.994;0.983;1.000;1.000;1.000;0.984;1.000)5'
coverage = 1.000
EC number :
EC 2.8.2.1
KEGG pathway :
00920 : Sulfur metabolism (30)
01120 : Microbial metabolism in diverse environments (468)
InterPro :
IPR000863 : Sulfotransferase domain
GO :
0008146 : Molecular Function : sulfotransferase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 25, nucl 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017846)
HIX0017846
HIT000339777
(
BC110887
)
Representative transcript
(Sulfotransferase 1A1; ST1A1; EC=2.8.2.1; Aryl sulfotransferase 1; HAST1/HAST2; Phenol sulfotransferase 1; Phenol-sulfating phenol sulfotransferase 1; P-PST 1; ST1A3; Thermostable phenol sulfotransferase; Ts-PST;)
genome : 28,616,909 - 28,634,573 (17,665)
query : 1 - 1,652 (1,652/1,722)
11 exons
identity = 0.996
3'(1.000;0.994;1.000;1.000;1.000;1.000;1.000;
0.948;0.996;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.8.2.1
KEGG pathway :
00920 : Sulfur metabolism (30)
01120 : Microbial metabolism in diverse environments (468)
InterPro :
IPR000863 : Sulfotransferase domain
GO :
0008146 : Molecular Function : sulfotransferase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23.5, cyto_nucl 16, cyto 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017846)
HIX0017846
HIT000217854
(
U09031
)
(Sulfotransferase 1A1; ST1A1; EC=2.8.2.1; Aryl sulfotransferase 1; HAST1/HAST2; Phenol sulfotransferase 1; Phenol-sulfating phenol sulfotransferase 1; P-PST 1; ST1A3; Thermostable phenol sulfotransferase; Ts-PST;)
genome : 28,616,917 - 28,620,217 (3,301)
query : 1 - 1,154 (1,154/1,179)
7 exons
identity = 0.994
3'(0.994;0.983;1.000;1.000;1.000;0.984;1.000)5'
coverage = 1.000
EC number :
EC 2.8.2.1
KEGG pathway :
00920 : Sulfur metabolism (30)
01120 : Microbial metabolism in diverse environments (468)
InterPro :
IPR000863 : Sulfotransferase domain
GO :
0008146 : Molecular Function : sulfotransferase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 25, nucl 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017846)
HIX0017846
HIT000317951 (
NM_177536
)
(Sulfotransferase domain containing protein.)
genome : 28,616,909 - 28,634,907 (17,999)
query : 1 - 1,276 (1,276/1,291)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.8.2.1
KEGG pathway :
00920 : Sulfur metabolism (30)
01120 : Microbial metabolism in diverse environments (468)
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 16, cyto 13
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017846)
HIX0017846
HIT000198061 (
NM_001055
)
(Sulfotransferase domain containing protein.)
genome : 28,616,909 - 28,621,365 (4,457)
query : 1 - 1,239 (1,239/1,254)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
EC number :
EC 2.8.2.1
KEGG pathway :
00920 : Sulfur metabolism (30)
01120 : Microbial metabolism in diverse environments (468)
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 25, nucl 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017846)
HIX0017846
HIT000317948 (
NM_177529
)
(Sulfotransferase domain containing protein.)
genome : 28,616,909 - 28,621,365 (4,457)
query : 1 - 1,270 (1,270/1,285)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
EC number :
EC 2.8.2.1
KEGG pathway :
00920 : Sulfur metabolism (30)
01120 : Microbial metabolism in diverse environments (468)
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 25, nucl 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017846)
HIX0017846
HIT000317949 (
NM_177530
)
(Sulfotransferase domain containing protein.)
genome : 28,616,909 - 28,620,649 (3,741)
query : 1 - 1,395 (1,395/1,410)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
EC number :
EC 2.8.2.1
KEGG pathway :
00920 : Sulfur metabolism (30)
01120 : Microbial metabolism in diverse environments (468)
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 25, nucl 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017846)
HIX0017846
HIT000317950 (
NM_177534
)
(Sulfotransferase domain containing protein.)
genome : 28,616,909 - 28,620,649 (3,741)
query : 1 - 1,594 (1,594/1,609)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.8.2.1
KEGG pathway :
00920 : Sulfur metabolism (30)
01120 : Microbial metabolism in diverse environments (468)
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 25, nucl 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017846)
HIX0017846
HIT000308002 (
ENST00000350842
)
(Sulfotransferase domain containing protein.)
genome : 28,616,903 - 28,634,907 (18,005)
query : 1 - 1,282 (1,282/1,282)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 16, cyto 13
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017846)
HIX0017846
HIT000334052
(
BC048316
)
(Sulfotransferase 1A1; ST1A1; EC=2.8.2.1; Aryl sulfotransferase 1; HAST1/HAST2; Phenol sulfotransferase 1; Phenol-sulfating phenol sulfotransferase 1; P-PST 1; ST1A3; Thermostable phenol sulfotransferase; Ts-PST;)
genome : 28,616,917 - 28,634,874 (17,958)
query : 1 - 1,872 (1,872/1,886)
10 exons
identity = 0.997
3'(0.994;0.994;0.989;1.000;1.000;1.000;1.000;
0.992;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.8.2.1
KEGG pathway :
00920 : Sulfur metabolism (30)
01120 : Microbial metabolism in diverse environments (468)
InterPro :
IPR000863 : Sulfotransferase domain
GO :
0008146 : Molecular Function : sulfotransferase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 25, nucl 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017846)
HIX0017846
HIT000677923 (
ENST00000564818
)
(Sulfotransferase domain containing protein.)
genome : 28,616,908 - 28,634,573 (17,666)
query : 1 - 1,653 (1,653/1,653)
11 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.948;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22.5, cyto_nucl 16, cyto 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017846)
HIX0017846
HIT000030007
(
BC000923
)
(Sulfotransferase domain containing protein.)
genome : 28,616,924 - 28,621,315 (4,392)
query : 1 - 1,174 (1,174/1,188)
8 exons
identity = 0.999
3'(1.000;0.994;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR000863 : Sulfotransferase domain
GO :
0008146 : Molecular Function : sulfotransferase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 25, nucl 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017846)
HIX0017846
HIT000329084
(
AB209149
)
(Sulfotransferase 1A1 isoform b.)
genome : 28,616,912 - 28,625,600 (8,689)
query : 1 - 7,951 (7,951/7,951)
4 exons
identity = 0.995
3'(0.997;0.994;1.000;0.995)5'
coverage = 1.000
EC number :
EC 2.8.2.1
KEGG pathway :
00920 : Sulfur metabolism (30)
01120 : Microbial metabolism in diverse environments (468)
InterPro :
IPR000863 : Sulfotransferase domain
GO :
0008146 : Molecular Function : sulfotransferase activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 18, pero 5, E.R. 3.5, E.R._mito 3.5, mito 2.5,
cyto_pero 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017846)
HIX0017846
HIT000680989 (
ENST00000567998
)
(Sulfotransferase domain containing protein.)
genome : 28,616,912 - 28,625,600 (8,689)
query : 1 - 7,948 (7,948/7,948)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 19, E.R. 4.5, pero 4, E.R._mito 3, plas 1,
nucl 1, cyto 1, cyto_nucl 1, lyso 1, cyto_plas 1
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017846)
HIX0017846
HIT000675269 (
ENST00000562058
)
(Sulfotransferase domain containing protein.)
genome : 28,616,913 - 28,634,874 (17,962)
query : 1 - 1,876 (1,876/1,876)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 25, nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017846)
HIX0017846
HIT000192039
(
L10819
)
(Sulfotransferase domain containing protein.)
genome : 28,616,915 - 28,621,284 (4,370)
query : 3 - 1,153 (1,151/1,155)
8 exons
identity = 0.993
3'(0.994;0.983;1.000;1.000;1.000;0.984;1.000;
0.970)5'
coverage = 0.997
InterPro :
IPR000863 : Sulfotransferase domain
GO :
0008146 : Molecular Function : sulfotransferase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 25, nucl 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017846)
HIX0017846
HIT000478976 (
ENST00000395609
)
(Sulfotransferase domain containing protein.)
genome : 28,616,918 - 28,634,874 (17,957)
query : 1 - 1,871 (1,871/1,871)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 25, nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017846)
HIX0017846
HIT000478974 (
ENST00000395607
)
(Sulfotransferase domain containing protein.)
genome : 28,616,918 - 28,620,649 (3,732)
query : 1 - 1,386 (1,386/1,386)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 25, nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017846)
HIX0017846
HIT000192398
(
L19955
)
(Sulfotransferase 1A1; ST1A1; EC=2.8.2.1; Aryl sulfotransferase 1; HAST1/HAST2; Phenol sulfotransferase 1; Phenol-sulfating phenol sulfotransferase 1; P-PST 1; ST1A3; Thermostable phenol sulfotransferase; Ts-PST;)
genome : 28,616,918 - 28,620,217 (3,300)
query : 1 - 1,153 (1,153/1,153)
7 exons
identity = 0.994
3'(0.994;0.983;1.000;1.000;1.000;0.984;1.000)5'
coverage = 1.000
EC number :
EC 2.8.2.1
KEGG pathway :
00920 : Sulfur metabolism (30)
01120 : Microbial metabolism in diverse environments (468)
InterPro :
IPR000863 : Sulfotransferase domain
GO :
0008146 : Molecular Function : sulfotransferase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 25, nucl 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017846)
HIX0017846
HIT000192401
(
L19999
)
(Sulfotransferase domain containing protein.)
genome : 28,616,923 - 28,621,317 (4,395)
query : 1 - 1,176 (1,176/1,176)
8 exons
identity = 0.994
3'(0.985;0.994;1.000;1.000;1.000;1.000;1.000;
0.985)5'
coverage = 1.000
InterPro :
IPR000863 : Sulfotransferase domain
GO :
0008146 : Molecular Function : sulfotransferase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 26, nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017846)
HIX0017846
HIT000323663
(
X78283
)
(Sulfotransferase domain containing protein.)
genome : 28,616,948 - 28,621,310 (4,363)
query : 97 - 1,241 (1,145/1,250)
8 exons
identity = 0.999
3'(1.000;0.994;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 0.923
EC number :
EC 2.8.2.1
KEGG pathway :
00920 : Sulfur metabolism (30)
01120 : Microbial metabolism in diverse environments (468)
InterPro :
IPR000863 : Sulfotransferase domain
GO :
0008146 : Molecular Function : sulfotransferase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 25, nucl 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017846)
HIX0017846
HIT000218792
(
U26309
)
(Sulfotransferase 1A1; ST1A1; EC=2.8.2.1; Aryl sulfotransferase 1; HAST1/HAST2; Phenol sulfotransferase 1; Phenol-sulfating phenol sulfotransferase 1; P-PST 1; ST1A3; Thermostable phenol sulfotransferase; Ts-PST;)
genome : 28,616,940 - 28,620,241 (3,302)
query : 1 - 1,154 (1,154/1,154)
7 exons
identity = 0.997
3'(0.997;0.989;1.000;1.000;1.000;0.992;1.000)5'
coverage = 1.000
EC number :
EC 2.8.2.1
KEGG pathway :
00920 : Sulfur metabolism (30)
01120 : Microbial metabolism in diverse environments (468)
InterPro :
IPR000863 : Sulfotransferase domain
GO :
0008146 : Molecular Function : sulfotransferase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 26, nucl 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017846)
HIX0017846
HIT000682493 (
ENST00000569554
)
(Sulfotransferase domain containing protein.)
genome : 28,616,940 - 28,620,241 (3,302)
query : 1 - 1,155 (1,155/1,155)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 25, nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017846)
HIX0017846
HIT000676645 (
ENST00000563493
)
(Sulfotransferase domain containing protein.)
genome : 28,616,949 - 28,634,946 (17,998)
query : 1 - 1,651 (1,651/1,651)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 25, nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017846)
HIX0017846
HIT000120272 (
ENST00000314752
)
(Sulfotransferase domain containing protein.)
genome : 28,616,949 - 28,621,328 (4,380)
query : 1 - 1,162 (1,162/1,162)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 25, nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017846)
HIX0017846
HIT000244147
(
AJ007418
)
(Sulfotransferase 1A1; ST1A1; EC=2.8.2.1; Aryl sulfotransferase 1; HAST1/HAST2; Phenol sulfotransferase 1; Phenol-sulfating phenol sulfotransferase 1; P-PST 1; ST1A3; Thermostable phenol sulfotransferase; Ts-PST;)
genome : 28,617,126 - 28,620,183 (3,058)
query : 11 - 920 (910/925)
7 exons
identity = 0.992
3'(0.969;0.994;1.000;1.000;1.000;1.000;0.987)5'
coverage = 0.984
EC number :
EC 2.8.2.1
KEGG pathway :
00920 : Sulfur metabolism (30)
01120 : Microbial metabolism in diverse environments (468)
InterPro :
IPR000863 : Sulfotransferase domain
GO :
0008146 : Molecular Function : sulfotransferase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 25, nucl 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017846)
HIX0017846
HIT000324071
(
X84654
)
(Sulfotransferase 1A1; ST1A1; EC=2.8.2.1; Aryl sulfotransferase 1; HAST1/HAST2; Phenol sulfotransferase 1; Phenol-sulfating phenol sulfotransferase 1; P-PST 1; ST1A3; Thermostable phenol sulfotransferase; Ts-PST;)
genome : 28,617,138 - 28,620,183 (3,046)
query : 8 - 906 (899/906)
7 exons
identity = 0.992
3'(1.000;0.983;0.989;0.992;1.000;0.984;1.000)5'
coverage = 0.992
EC number :
EC 2.8.2.1
KEGG pathway :
00920 : Sulfur metabolism (30)
01120 : Microbial metabolism in diverse environments (468)
InterPro :
IPR000863 : Sulfotransferase domain
GO :
0008146 : Molecular Function : sulfotransferase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 25, nucl 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017846)
HIX0017846
HIT000100244
(
BT007324
)
(Sulfotransferase domain containing protein.)
genome : 28,617,144 - 28,620,176 (3,033)
query : 1 - 886 (886/888)
7 exons
identity = 0.999
3'(1.000;0.994;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.998
InterPro :
IPR000863 : Sulfotransferase domain
GO :
0008146 : Molecular Function : sulfotransferase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 25, nucl 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017846)
HIX0017846
HIT000679235 (
ENST00000566189
)
(Sulfotransferase domain containing protein.)
genome : 28,617,186 - 28,621,311 (4,126)
query : 1 - 939 (939/939)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 26, nucl 3, mito 3, mito_nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017846)
HIX0017846
HIT000680519 (
ENST00000567512
)
(Sulfotransferase domain containing protein.)
genome : 28,617,517 - 28,621,353 (3,837)
query : 1 - 615 (615/615)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23, nucl 5, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017846)
HIX0173350
HIT000447580_04
(
DQ581049
)
Representative transcript
(Non-protein coding transcript.)
genome : 28,623,377 - 28,623,406 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173350)
HIX0212131
HIT000462471_08
(
DQ595940
)
Representative transcript
(Non-protein coding transcript.)
genome : 28,648,464 - 28,648,493 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0212131)
HIX0211988
HIT000628870 (
ENST00000529716
)
(Nuclear pore complex interacting protein family protein.)
genome : 28,648,975 - 28,670,003 (21,029)
query : 1 - 2,058 (2,058/2,058)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 14, extr 9, golg 3, mito_pero 3, mito 2, pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0211988)
HIX0211988
HIT000439582_07
(
DQ573051
)
Representative transcript
(Non-protein coding transcript.)
genome : 28,648,995 - 28,649,024 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0211988)
HIX0212116
HIT000452108_06
(
DQ585577
)
Representative transcript
(Non-protein coding transcript.)
genome : 28,651,537 - 28,651,565 (29)
query : 1 - 29 (29/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 0.967
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0212116)
HIX0212106
HIT000450803_06
(
DQ584272
)
Representative transcript
(Non-protein coding transcript.)
genome : 28,651,686 - 28,651,715 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0212106)
HIX0211988
HIT000309453 (
ENST00000355290
)
(Nuclear pore complex interacting protein family protein.)
genome : 28,655,485 - 28,669,951 (14,467)
query : 1 - 1,298 (1,298/1,298)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, mito 7, pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0211988)
HIX0211988
HIT000533258_02 (
ENST00000435324
)
(Nuclear pore complex interacting protein family protein.)
genome : 28,655,911 - 28,669,998 (14,088)
query : 1 - 1,109 (1,109/1,109)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, mito 7, pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0211988)
HIX0173257
HIT000022126_06
(
AK097271
)
Representative transcript
(Hypothetical short protein.)
genome : 28,657,119 - 28,658,785 (1,667)
query : 1 - 1,654 (1,654/1,654)
1 exon
identity = 0.986
5'(0.986)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 26, nucl 3, cyto 3, cyto_nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173257)
HIX0211988
HIT000625639_03 (
ENST00000526428
)
(Nuclear pore complex interacting protein family protein.)
genome : 28,663,555 - 28,668,269 (4,715)
query : 1 - 508 (508/508)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, cyto_nucl 11.5, extr 10, nucl 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0211988)
HIX0173355
HIT000449857_07
(
DQ583326
)
Representative transcript
(Non-protein coding transcript.)
genome : 28,665,611 - 28,665,641 (31)
query : 1 - 31 (31/31)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173355)
HIX0223149
HIT000675422 (
ENST00000562217
)
(Conserved hypothetical protein.)
genome : 28,671,017 - 28,752,102 (81,086)
query : 1 - 361 (361/361)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0223149)
HIX0223149
HIT000682209_14 (
ENST00000569264
)
(Phospholipase A2 family protein.)
genome : 28,671,017 - 28,671,122 (106)
query : 1 - 106 (106/106)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, cyto_nucl 4, nucl 3.5, cyto 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0223149)
HIX0224019
HIT000714571_03 (
ENST00000602838
)
(Hypothetical short protein.)
genome : 28,671,852 - 28,672,222 (371)
query : 1 - 371 (371/371)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, mito 9, cyto 3, cyto_pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224019)
HIX0173328
HIT000439889_09
(
DQ573358
)
Representative transcript
(Non-protein coding transcript.)
genome : 28,677,657 - 28,677,686 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173328)
HIX0012921
HIT000656444 (
NM_001199142
)
(Eukaryotic translation initiation factor 3 subunit C; eIF3c; Eukaryotic translation initiation factor 3 subunit 8; eIF3 p110;)
genome : 28,699,879 - 28,747,051 (47,173)
query : 1 - 3,260 (3,260/3,265)
21 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.998
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 15.5, cyto 14.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012921)
HIX0012921
HIT000424952
(
AK292155
)
Representative transcript
(Eukaryotic translation initiation factor 3 subunit C; eIF3c; Eukaryotic translation initiation factor 3 subunit 8; eIF3 p110;)
genome : 28,699,879 - 28,746,919 (47,041)
query : 1 - 3,128 (3,128/3,128)
21 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000717 : Proteasome component (PCI) domain
IPR008905 : Eukaryotic translation initiation factor 3 subunit C, N-terminal domain
IPR011991 : Winged helix-turn-helix DNA-binding domain
GO :
0003743 : Molecular Function : translation initiation factor activity
0005515 : Molecular Function : protein binding
0005852 : Cellular Component : eukaryotic translation initiation factor 3 complex
0006413 : Biological Process : translational initiation
0031369 : Molecular Function : translation initiation factor binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 15.5, cyto 14.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012921)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK088076
Bos
sp. (Cow) : BC103352
Rattus
sp. (Rat) : BC103728
Pongo
sp. (Orangutan) : CR858924
Oryzias
sp. (Medaka) : ENSORLT00000007943
Pan
sp. (Chimpanzee) : ENSPTRT00000014639
Equus
sp. (Horse) : XM_001915736
Canis
sp. (Dog) : XM_536923
Macaca
sp. (Macaque) : XR_012918
Monodelphis
sp. (Opossum) : XR_030217
HIX0012921
HIT000679537 (
ENST00000566501
)
(Eukaryotic translation initiation factor 3 subunit C; eIF3c; Eukaryotic translation initiation factor 3 subunit 8; eIF3 p110;)
genome : 28,699,879 - 28,746,919 (47,041)
query : 1 - 3,128 (3,128/3,128)
21 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 15.5, cyto 14.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012921)
HIX0012921
HIT000045362_03
(
AK125489
)
(Hypothetical protein.)
genome : 28,699,913 - 28,829,149 (129,237)
query : 1 - 1,930 (1,930/1,930)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13.5, nucl 11.5, cyto 10.5, extr 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012921)
HIX0012921
HIT000607054_01 (
ENST00000507031
)
(Hypothetical protein.)
genome : 28,699,913 - 28,829,149 (129,237)
query : 1 - 1,930 (1,930/1,930)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14, extr 6, nucl 5, cyto 4, cyto_pero 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012921)
HIX0012921
HIT000503397
(
BC157842
)
(Eukaryotic translation initiation factor 3 subunit C; eIF3c; Eukaryotic translation initiation factor 3 subunit 8; eIF3 p110;)
genome : 28,699,990 - 28,746,857 (46,868)
query : 1 - 2,955 (2,955/2,955)
21 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.989;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000717 : Proteasome component (PCI) domain
IPR008905 : Eukaryotic translation initiation factor 3 subunit C, N-terminal domain
IPR011991 : Winged helix-turn-helix DNA-binding domain
GO :
0003743 : Molecular Function : translation initiation factor activity
0005515 : Molecular Function : protein binding
0005852 : Cellular Component : eukaryotic translation initiation factor 3 complex
0006413 : Biological Process : translational initiation
0031369 : Molecular Function : translation initiation factor binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 15.5, cyto 14.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012921)
HIX0223566
HIT000677717 (
ENST00000564603
)
(Cdc37, C-terminal domain containing protein.)
genome : 28,711,615 - 28,712,861 (1,247)
query : 1 - 959 (959/959)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, cyto 5.5, cyto_nucl 4.5, nucl 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0223566)
HIX0012921
HIT000127363 (
ENST00000331666
)
(Eukaryotic translation initiation factor 3 subunit C; eIF3c; Eukaryotic translation initiation factor 3 subunit 8; eIF3 p110;)
genome : 28,722,684 - 28,747,051 (24,368)
query : 1 - 3,145 (3,145/3,145)
21 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 15.5, cyto 14.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012921)
HIX0012921
HIT000338822_04
(
BC107692
)
(Eukaryotic translation initiation factor 3 subunit C.)
genome : 28,722,782 - 28,726,708 (3,927)
query : 5 - 821 (817/850)
8 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.991;
1.000)3'
coverage = 0.993
InterPro :
IPR008905 : Eukaryotic translation initiation factor 3 subunit C, N-terminal domain
GO :
0003743 : Molecular Function : translation initiation factor activity
0005852 : Cellular Component : eukaryotic translation initiation factor 3 complex
0006413 : Biological Process : translational initiation
0031369 : Molecular Function : translation initiation factor binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24.5, cyto_nucl 14.5, cyto 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012921)
HIX0012921
HIT000200550 (
NM_003752
)
(Eukaryotic translation initiation factor 3 subunit C; eIF3c; Eukaryotic translation initiation factor 3 subunit 8; eIF3 p110;)
genome : 28,722,782 - 28,747,049 (24,268)
query : 1 - 3,045 (3,045/3,063)
21 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 15.5, cyto 14.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012921)
HIX0012921
HIT000366357 (
NM_001037808
)
(Eukaryotic translation initiation factor 3 subunit C; eIF3c; Eukaryotic translation initiation factor 3 subunit 8; eIF3 p110;)
genome : 28,722,782 - 28,747,049 (24,268)
query : 1 - 3,094 (3,094/3,111)
21 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 15.5, cyto 14.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012921)
HIX0012921
HIT000724543 (
NM_001267574
)
(Eukaryotic translation initiation factor 3 subunit C; eIF3c; Eukaryotic translation initiation factor 3 subunit 8; eIF3 p110;)
genome : 28,722,782 - 28,747,049 (24,268)
query : 1 - 3,183 (3,183/3,200)
20 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 15.5, cyto 14.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012921)
HIX0012921
HIT000478955 (
ENST00000395587
)
(Eukaryotic translation initiation factor 3 subunit C; eIF3c; Eukaryotic translation initiation factor 3 subunit 8; eIF3 p110;)
genome : 28,722,782 - 28,747,048 (24,267)
query : 1 - 3,093 (3,093/3,093)
21 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 15.5, cyto 14.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012921)
HIX0012921
HIT000682626_02 (
ENST00000569690
)
(Eukaryotic translation initiation factor 3 subunit C.)
genome : 28,722,784 - 28,725,730 (2,947)
query : 1 - 581 (581/581)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto_nucl 15, cyto 11
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012921)
HIX0012921
HIT000495807
(
AK301183
)
(Eukaryotic translation initiation factor 3 subunit C; eIF3c; Eukaryotic translation initiation factor 3 subunit 8; eIF3 p110;)
genome : 28,722,785 - 28,746,917 (24,133)
query : 1 - 2,865 (2,865/2,865)
21 exons
identity = 0.992
5'(1.000;1.000;1.000;1.000;0.770;1.000;1.000;
0.992;1.000;1.000;0.993;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.994)3'
coverage = 1.000
InterPro :
IPR000717 : Proteasome component (PCI) domain
IPR008905 : Eukaryotic translation initiation factor 3 subunit C, N-terminal domain
IPR011991 : Winged helix-turn-helix DNA-binding domain
GO :
0003743 : Molecular Function : translation initiation factor activity
0005515 : Molecular Function : protein binding
0005852 : Cellular Component : eukaryotic translation initiation factor 3 complex
0006413 : Biological Process : translational initiation
0031369 : Molecular Function : translation initiation factor binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 15.5, cyto 14.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012921)
HIX0012921
HIT000495857
(
AK301233
)
(Eukaryotic translation initiation factor 3 subunit C.)
genome : 28,722,786 - 28,746,857 (24,072)
query : 1 - 2,393 (2,393/2,393)
17 exons
identity = 0.995
5'(1.000;1.000;1.000;1.000;0.911;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000717 : Proteasome component (PCI) domain
IPR008905 : Eukaryotic translation initiation factor 3 subunit C, N-terminal domain
IPR011991 : Winged helix-turn-helix DNA-binding domain
GO :
0003743 : Molecular Function : translation initiation factor activity
0005515 : Molecular Function : protein binding
0005852 : Cellular Component : eukaryotic translation initiation factor 3 complex
0006413 : Biological Process : translational initiation
0031369 : Molecular Function : translation initiation factor binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 25, mito 3, nucl 2, pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012921)
HIX0012921
HIT000499124_02
(
AK304500
)
(Eukaryotic translation initiation factor 3 subunit C.)
genome : 28,722,793 - 28,746,917 (24,125)
query : 1 - 2,636 (2,636/2,636)
19 exons
identity = 0.995
5'(1.000;0.985;0.911;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.994;1.000;1.000;1.000;0.994)3'
coverage = 1.000
InterPro :
IPR000717 : Proteasome component (PCI) domain
IPR008905 : Eukaryotic translation initiation factor 3 subunit C, N-terminal domain
IPR011991 : Winged helix-turn-helix DNA-binding domain
GO :
0003743 : Molecular Function : translation initiation factor activity
0005515 : Molecular Function : protein binding
0005852 : Cellular Component : eukaryotic translation initiation factor 3 complex
0006413 : Biological Process : translational initiation
0031369 : Molecular Function : translation initiation factor binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 25, cyto 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012921)
HIX0012921
HIT000011980
(
AK055366
)
(Eukaryotic translation initiation factor 3 subunit C.)
genome : 28,722,795 - 28,746,917 (24,123)
query : 1 - 2,826 (2,826/2,826)
21 exons
identity = 0.997
5'(1.000;1.000;1.000;0.958;1.000;1.000;1.000;
1.000;0.994;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000717 : Proteasome component (PCI) domain
IPR008905 : Eukaryotic translation initiation factor 3 subunit C, N-terminal domain
IPR011991 : Winged helix-turn-helix DNA-binding domain
GO :
0003743 : Molecular Function : translation initiation factor activity
0005515 : Molecular Function : protein binding
0005852 : Cellular Component : eukaryotic translation initiation factor 3 complex
0006413 : Biological Process : translational initiation
0031369 : Molecular Function : translation initiation factor binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto_nucl 16.8333, nucl 16, cyto 15.5,
cyto_mito 8.66667
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012921)
HIX0012921
HIT000494045
(
AK299421
)
(Eukaryotic translation initiation factor 3 subunit C.)
genome : 28,722,795 - 28,746,917 (24,123)
query : 1 - 2,366 (2,366/2,366)
17 exons
identity = 0.999
5'(1.000;1.000;1.000;0.985;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000717 : Proteasome component (PCI) domain
IPR008905 : Eukaryotic translation initiation factor 3 subunit C, N-terminal domain
IPR011991 : Winged helix-turn-helix DNA-binding domain
GO :
0003743 : Molecular Function : translation initiation factor activity
0005515 : Molecular Function : protein binding
0005852 : Cellular Component : eukaryotic translation initiation factor 3 complex
0006413 : Biological Process : translational initiation
0031369 : Molecular Function : translation initiation factor binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 26, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012921)
HIX0012921
HIT000498414
(
AK303790
)
(Eukaryotic translation initiation factor 3 subunit C; eIF3c; Eukaryotic translation initiation factor 3 subunit 8; eIF3 p110;)
genome : 28,722,795 - 28,746,917 (24,123)
query : 1 - 2,870 (2,870/2,870)
21 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.994;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000717 : Proteasome component (PCI) domain
IPR008905 : Eukaryotic translation initiation factor 3 subunit C, N-terminal domain
IPR011991 : Winged helix-turn-helix DNA-binding domain
GO :
0003743 : Molecular Function : translation initiation factor activity
0005515 : Molecular Function : protein binding
0005852 : Cellular Component : eukaryotic translation initiation factor 3 complex
0006413 : Biological Process : translational initiation
0031369 : Molecular Function : translation initiation factor binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 15.5, cyto 14.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012921)
HIX0012921
HIT000677372 (
ENST00000564243
)
(Eukaryotic translation initiation factor 3 subunit C; eIF3c; Eukaryotic translation initiation factor 3 subunit 8; eIF3 p110;)
genome : 28,722,795 - 28,746,917 (24,123)
query : 1 - 2,870 (2,870/2,870)
21 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 15.5, cyto 14.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012921)
HIX0012921
HIT000030496
(
BC001571
)
(Eukaryotic translation initiation factor 3 subunit C; eIF3c; Eukaryotic translation initiation factor 3 subunit 8; eIF3 p110;)
genome : 28,722,804 - 28,747,049 (24,246)
query : 1 - 3,023 (3,023/3,041)
21 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.997)3'
coverage = 1.000
InterPro :
IPR000717 : Proteasome component (PCI) domain
IPR008905 : Eukaryotic translation initiation factor 3 subunit C, N-terminal domain
IPR011991 : Winged helix-turn-helix DNA-binding domain
GO :
0003743 : Molecular Function : translation initiation factor activity
0005515 : Molecular Function : protein binding
0005852 : Cellular Component : eukaryotic translation initiation factor 3 complex
0006413 : Biological Process : translational initiation
0031369 : Molecular Function : translation initiation factor binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 15.5, cyto 14.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012921)
HIX0012921
HIT000029715_04
(
BC000533
)
(Eukaryotic translation initiation factor 3 subunit C; eIF3c; Eukaryotic translation initiation factor 3 subunit 8;)
genome : 28,722,808 - 28,746,917 (24,110)
query : 1 - 1,458 (1,458/1,498)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 0.999
InterPro :
IPR000717 : Proteasome component (PCI) domain
IPR008905 : Eukaryotic translation initiation factor 3 subunit C, N-terminal domain
IPR011991 : Winged helix-turn-helix DNA-binding domain
GO :
0003743 : Molecular Function : translation initiation factor activity
0005515 : Molecular Function : protein binding
0005852 : Cellular Component : eukaryotic translation initiation factor 3 complex
0006413 : Biological Process : translational initiation
0031369 : Molecular Function : translation initiation factor binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 13, cysk 9, nucl 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012921)
HIX0012921
HIT000003214
(
AK000739
)
(Eukaryotic translation initiation factor 3 subunit C; eIF3c; Eukaryotic translation initiation factor 3 subunit 8; eIF3 p110;)
genome : 28,722,848 - 28,746,918 (24,071)
query : 3 - 2,988 (2,986/2,988)
20 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.999
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 15.5, cyto 14.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012921)
HIX0012921
HIT000487888
(
AK293264
)
(Eukaryotic translation initiation factor 3 subunit C.)
genome : 28,722,846 - 28,746,917 (24,072)
query : 1 - 2,535 (2,535/2,535)
18 exons
identity = 0.997
5'(1.000;1.000;1.000;0.995;0.870;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000717 : Proteasome component (PCI) domain
IPR008905 : Eukaryotic translation initiation factor 3 subunit C, N-terminal domain
IPR011991 : Winged helix-turn-helix DNA-binding domain
GO :
0003743 : Molecular Function : translation initiation factor activity
0005515 : Molecular Function : protein binding
0005852 : Cellular Component : eukaryotic translation initiation factor 3 complex
0006413 : Biological Process : translational initiation
0031369 : Molecular Function : translation initiation factor binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 21, nucl 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012921)
HIX0012921
HIT000679892 (
ENST00000566866
)
(Eukaryotic translation initiation factor 3 subunit C; eIF3c; Eukaryotic translation initiation factor 3 subunit 8; eIF3 p110;)
genome : 28,722,848 - 28,746,918 (24,071)
query : 1 - 2,986 (2,986/2,986)
20 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 15.5, cyto 14.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012921)
HIX0012921
HIT000264526
(
BC071705
)
(Eukaryotic translation initiation factor 3 subunit C; eIF3c; Eukaryotic translation initiation factor 3 subunit 8; eIF3 p110;)
genome : 28,722,859 - 28,746,917 (24,059)
query : 1 - 2,885 (2,885/2,900)
21 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000717 : Proteasome component (PCI) domain
IPR008905 : Eukaryotic translation initiation factor 3 subunit C, N-terminal domain
IPR011991 : Winged helix-turn-helix DNA-binding domain
GO :
0003743 : Molecular Function : translation initiation factor activity
0005515 : Molecular Function : protein binding
0005852 : Cellular Component : eukaryotic translation initiation factor 3 complex
0006413 : Biological Process : translational initiation
0031369 : Molecular Function : translation initiation factor binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 15.5, cyto 14.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012921)
HIX0012921
HIT000386178
(
AY762099
)
(Eukaryotic translation initiation factor 3 subunit C; eIF3c; Eukaryotic translation initiation factor 3 subunit 8; eIF3 p110;)
genome : 28,722,974 - 28,746,917 (23,944)
query : 11 - 2,869 (2,859/2,909)
20 exons
identity = 0.999
5'(0.993;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.994)3'
coverage = 0.996
InterPro :
IPR000717 : Proteasome component (PCI) domain
IPR008905 : Eukaryotic translation initiation factor 3 subunit C, N-terminal domain
IPR011991 : Winged helix-turn-helix DNA-binding domain
GO :
0003743 : Molecular Function : translation initiation factor activity
0005515 : Molecular Function : protein binding
0005852 : Cellular Component : eukaryotic translation initiation factor 3 complex
0006413 : Biological Process : translational initiation
0031369 : Molecular Function : translation initiation factor binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 15.5, cyto 14.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012921)
HIX0012921
HIT000503404
(
BC157849
)
(Eukaryotic translation initiation factor 3 subunit C; eIF3c; Eukaryotic translation initiation factor 3 subunit 8; eIF3 p110;)
genome : 28,722,978 - 28,746,857 (23,880)
query : 1 - 2,795 (2,795/2,795)
20 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.993;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000717 : Proteasome component (PCI) domain
IPR008905 : Eukaryotic translation initiation factor 3 subunit C, N-terminal domain
IPR011991 : Winged helix-turn-helix DNA-binding domain
GO :
0003743 : Molecular Function : translation initiation factor activity
0005515 : Molecular Function : protein binding
0005852 : Cellular Component : eukaryotic translation initiation factor 3 complex
0006413 : Biological Process : translational initiation
0031369 : Molecular Function : translation initiation factor binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 15.5, cyto 14.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012921)
HIX0012921
HIT000676304_02 (
ENST00000563139
)
(Eukaryotic translation initiation factor 3 subunit C.)
genome : 28,723,358 - 28,725,733 (2,376)
query : 1 - 516 (516/516)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 12.6667, mito 10, nucl 9.5, cyto 8.5,
cyto_plas 6.33333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012921)
HIX0012921
HIT000681405_02 (
ENST00000568426
)
(Eukaryotic translation initiation factor 3 subunit C.)
genome : 28,724,580 - 28,726,209 (1,630)
query : 1 - 572 (572/572)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 14.1667, cyto_plas 9.16667,
nucl 8.5, mito 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012921)
HIX0012921
HIT000049802
(
AK130531
)
(Eukaryotic translation initiation factor 3 subunit C.)
genome : 28,726,651 - 28,746,918 (20,268)
query : 1 - 2,155 (2,155/2,155)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.997;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000717 : Proteasome component (PCI) domain
IPR008905 : Eukaryotic translation initiation factor 3 subunit C, N-terminal domain
IPR011991 : Winged helix-turn-helix DNA-binding domain
GO :
0003743 : Molecular Function : translation initiation factor activity
0005515 : Molecular Function : protein binding
0005852 : Cellular Component : eukaryotic translation initiation factor 3 complex
0006413 : Biological Process : translational initiation
0031369 : Molecular Function : translation initiation factor binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto_nucl 16.8333, cyto 16.5, nucl 15,
cyto_mito 9.16667
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012921)
HIX0012921
HIT000056722
(
BX648075
)
(Eukaryotic translation initiation factor 3 subunit C; eIF3c; Eukaryotic translation initiation factor 3 subunit 8; eIF3 p110;)
genome : 28,732,576 - 28,746,916 (14,341)
query : 1 - 3,958 (3,958/3,979)
13 exons
identity = 0.999
5'(0.999;0.990;1.000;1.000;1.000;0.995;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.999
InterPro :
IPR000717 : Proteasome component (PCI) domain
IPR008905 : Eukaryotic translation initiation factor 3 subunit C, N-terminal domain
IPR011991 : Winged helix-turn-helix DNA-binding domain
GO :
0003743 : Molecular Function : translation initiation factor activity
0005515 : Molecular Function : protein binding
0005852 : Cellular Component : eukaryotic translation initiation factor 3 complex
0006413 : Biological Process : translational initiation
0031369 : Molecular Function : translation initiation factor binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 23.5, cyto_nucl 17.5, cyto 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012921)
HIX0012921
HIT000678987 (
ENST00000565932
)
(Eukaryotic translation initiation factor 3 subunit C.)
genome : 28,732,576 - 28,746,916 (14,341)
query : 1 - 3,957 (3,957/3,957)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 23.5, cyto_nucl 17.5, cyto 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012921)
HIX0012921
HIT000677943_02 (
ENST00000564839
)
(Eukaryotic translation initiation factor 3 subunit C.)
genome : 28,737,583 - 28,738,393 (811)
query : 1 - 586 (586/586)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, cyto 13.5, cyto_nucl 11, nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012921)
HIX0012921
HIT000679555_02 (
ENST00000566519
)
(Eukaryotic translation initiation factor 3 subunit C.)
genome : 28,738,020 - 28,738,851 (832)
query : 1 - 607 (607/620)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 22, extr 4, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012921)
HIX0012921
HIT000100255_04
(
BT007335
)
(Eukaryotic translation initiation factor 3 subunit C.)
genome : 28,738,513 - 28,746,832 (8,320)
query : 1 - 976 (976/978)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.998
InterPro :
IPR000717 : Proteasome component (PCI) domain
IPR008905 : Eukaryotic translation initiation factor 3 subunit C, N-terminal domain
IPR011991 : Winged helix-turn-helix DNA-binding domain
GO :
0003743 : Molecular Function : translation initiation factor activity
0005515 : Molecular Function : protein binding
0005852 : Cellular Component : eukaryotic translation initiation factor 3 complex
0006413 : Biological Process : translational initiation
0031369 : Molecular Function : translation initiation factor binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 13, cysk 9, nucl 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012921)
HIX0012921
HIT000681959_02 (
ENST00000569005
)
(Eukaryotic translation initiation factor 3 subunit C.)
genome : 28,745,840 - 28,746,671 (832)
query : 20 - 610 (591/610)
3 exons
identity = 0.988
5'(1.000;1.000;0.961)3'
coverage = 0.969
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, mito 12, cyto_nucl 9.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012921)
HIX0012921
HIT000679134_02 (
ENST00000566086
)
(Eukaryotic translation initiation factor 3 subunit C.)
genome : 28,746,240 - 28,746,911 (672)
query : 1 - 424 (424/424)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, cyto_nucl 11, cysk 11, nucl 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0012921)
HIX0173329
HIT000439889_10
(
DQ573358
)
Representative transcript
(Non-protein coding transcript.)
genome : 28,749,251 - 28,749,280 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173329)
HIX0194347
HIT000503391
(
BC157836
)
Representative transcript
(Nuclear pore complex-interacting protein-like 1; Precursor;)
genome : 28,763,108 - 29,064,047 (300,940)
query : 1 - 2,081 (2,081/2,081)
8 exons
identity = 0.993
5'(0.993;1.000;0.990;1.000;1.000;1.000;0.998;
0.974)3'
coverage = 1.000
InterPro :
IPR009443 : Nuclear pore complex interacting protein
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 10, golg 8, E.R._golg 8, E.R. 6, mito_pero 3.5,
pero 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0194347)
HIX0194347
HIT000311601_03 (
ENST00000357796
)
(Nuclear pore complex-interacting protein-like 1; Precursor;)
genome : 28,763,108 - 28,784,128 (21,021)
query : 1 - 2,037 (2,037/2,037)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12, extr 9, mito_pero 3.5, pero 3, golg 3,
plas 2, mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0194347)
HIX0194347
HIT000503556
(
BC171825
)
(Nuclear pore complex-interacting protein-like 1; Precursor;)
genome : 28,763,108 - 28,784,128 (21,021)
query : 1 - 2,125 (2,125/2,125)
8 exons
identity = 0.996
5'(0.995;0.988;0.995;1.000;1.000;1.000;1.000;
0.997)3'
coverage = 1.000
InterPro :
IPR009443 : Nuclear pore complex interacting protein
SOSUI :
SOLUBLE PROTEIN
PSORT :
plas 14, nucl 6, cyto 4, mito_pero 3.5, pero 3,
mito 2, E.R. 2, cyto_golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0194347)
HIX0194347
HIT000664664 (
ENST00000550983
)
(Nuclear pore complex-interacting protein-like 1; Precursor;)
genome : 28,763,108 - 28,784,128 (21,021)
query : 1 - 2,123 (2,123/2,123)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
plas 14, nucl 6, cyto 4, mito_pero 3.5, pero 3,
mito 2, E.R. 2, cyto_golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0194347)
HIX0194347
HIT000439582_08
(
DQ573051
)
(Non-protein coding transcript.)
genome : 28,763,128 - 28,763,157 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0194347)
HIX0212117
HIT000452108_07
(
DQ585577
)
Representative transcript
(Non-protein coding transcript.)
genome : 28,765,645 - 28,765,673 (29)
query : 1 - 29 (29/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 0.967
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0212117)
HIX0212107
HIT000450803_07
(
DQ584272
)
Representative transcript
(Non-protein coding transcript.)
genome : 28,765,785 - 28,765,814 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0212107)
HIX0194347
HIT000533258_01 (
ENST00000435324
)
(Nuclear pore complex interacting protein family member.)
genome : 28,770,025 - 28,784,123 (14,099)
query : 1 - 1,109 (1,109/1,109)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, mito 7, pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0194347)
HIX0194347
HIT000625639_04 (
ENST00000526428
)
(Nuclear pore complex-interacting protein-like 1; Precursor;)
genome : 28,777,680 - 28,782,394 (4,715)
query : 1 - 508 (508/508)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, cyto_nucl 11.5, extr 10, nucl 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0194347)
HIX0173356
HIT000449857_08
(
DQ583326
)
Representative transcript
(Non-protein coding transcript.)
genome : 28,779,734 - 28,779,764 (31)
query : 1 - 31 (31/31)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173356)
HIX0223835
HIT000682209_15 (
ENST00000569264
)
(Phospholipase A2 family protein.)
genome : 28,785,142 - 28,785,247 (106)
query : 1 - 106 (106/106)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, cyto_nucl 4, nucl 3.5, cyto 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0223835)
HIX0173330
HIT000439889_11
(
DQ573358
)
Representative transcript
(Non-protein coding transcript.)
genome : 28,791,834 - 28,791,863 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173330)
HIX0212161
HIT000574426 (
ENST00000469929
)
(Ribosomal protein S8 family protein.)
genome : 28,825,301 - 28,825,994 (694)
query : 1 - 694 (694/694)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 13.5, nucl 11.5, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0212161)
HIX0223773
HIT000681168 (
ENST00000568183
)
(Conserved hypothetical protein.)
genome : 28,831,891 - 28,833,354 (1,464)
query : 1 - 540 (540/540)
2 exons
identity = 0.989
3'(1.000;0.984)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0223773)
HIX0223024
HIT000091982
(
BC029964
)
Representative transcript
(Ataxin 2, SM domain containing protein.)
genome : 28,834,737 - 28,844,490 (9,754)
query : 1 - 1,542 (1,542/1,542)
13 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.991;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR009604 : LsmAD domain
IPR025852 : Ataxin 2, SM domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto 9, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0223024)
HIX0223024
HIT000676044 (
ENST00000562867
)
(Ataxin 2, SM domain containing protein.)
genome : 28,834,803 - 28,837,926 (3,124)
query : 1 - 609 (609/609)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 14.5, extr 10, cyto_nucl 8, mito 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0223024)
HIX0223024
HIT000681250 (
ENST00000568266
)
(Ataxin 2, SM domain containing protein.)
genome : 28,835,459 - 28,842,089 (6,631)
query : 1 - 1,294 (1,294/1,294)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 25, extr 2, pero 2, nucl 1.5, cyto_nucl 1.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0223024)
HIX0223024
HIT000677768 (
ENST00000564656
)
(Ataxin 2, SM domain containing protein.)
genome : 28,835,772 - 28,838,206 (2,435)
query : 1 - 552 (552/552)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, mito 11, cyto_nucl 10
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0223024)
HIX0223024
HIT000674759 (
ENST00000561539
)
(Ataxin 2, SM domain containing protein.)
genome : 28,836,687 - 28,837,505 (819)
query : 1 - 509 (509/509)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, nucl 8, mito 5, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0223024)
HIX0223024
HIT000679129 (
ENST00000566080
)
(Conserved hypothetical protein.)
genome : 28,836,692 - 28,837,241 (550)
query : 1 - 329 (329/329)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 25, nucl 3.5, cyto_nucl 3, mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0223024)
HIX0223024
HIT000683191 (
ENST00000570284
)
(Conserved hypothetical protein.)
genome : 28,840,722 - 28,843,669 (2,948)
query : 1 - 701 (701/701)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 16, plas 9, mito_nucl 9, extr_plas 8,
E.R._mito 8, cyto_mito 8, mito_pero 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0223024)
HIX0223024
HIT000677412 (
ENST00000564284
)
(Conserved hypothetical protein.)
genome : 28,841,099 - 28,842,257 (1,159)
query : 1 - 603 (603/603)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 21, extr_plas 5.5, plas 5, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0223024)
HIX0222966
HIT000678904 (
ENST00000565845
)
(Ataxin-2, C-terminal domain containing protein.)
genome : 28,844,517 - 28,846,508 (1,992)
query : 1 - 750 (750/750)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, cyto 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222966)
HIX0222966
HIT000677171 (
ENST00000564035
)
(Conserved hypothetical protein.)
genome : 28,845,177 - 28,846,637 (1,461)
query : 1 - 786 (786/786)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23.5, cyto_nucl 13.5, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222966)
HIX0222966
HIT000065772
(
AF070605
)
Representative transcript
(Ataxin-2-like protein; Ataxin-2 domain protein; Ataxin-2-related protein;)
genome : 28,845,385 - 28,848,557 (3,173)
query : 3 - 1,935 (1,933/1,952)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 16, cyto 8.5, cyto_nucl 7.5, nucl 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222966)
HIX0222966
HIT000675773 (
ENST00000562583
)
(Conserved hypothetical protein.)
genome : 28,845,385 - 28,848,558 (3,174)
query : 3 - 1,936 (1,934/1,936)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 16, cyto 8.5, cyto_nucl 7.5, nucl 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222966)
HIX0222966
HIT000087462
(
BC010239
)
(Ataxin-2-like protein; Ataxin-2 domain protein; Ataxin-2-related protein;)
genome : 28,845,386 - 28,848,530 (3,145)
query : 1 - 2,150 (2,150/2,164)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 15, cyto 6.5, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222966)
HIX0222966
HIT000679969 (
ENST00000566946
)
(Conserved hypothetical protein.)
genome : 28,845,386 - 28,848,542 (3,157)
query : 1 - 2,162 (2,162/2,162)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 15, cyto 6.5, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222966)
HIX0222966
HIT000674948 (
ENST00000561732
)
(Conserved hypothetical protein.)
genome : 28,845,650 - 28,846,746 (1,097)
query : 1 - 643 (643/643)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19.5, cyto_nucl 13.5, cyto 6.5, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222966)
HIX0222966
HIT000675868 (
ENST00000562686
)
(Conserved hypothetical protein.)
genome : 28,846,173 - 28,846,751 (579)
query : 1 - 489 (489/489)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 20, nucl 6, extr 5, cyto_nucl 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222966)
HIX0222966
HIT000682262 (
ENST00000569318
)
(Conserved hypothetical protein.)
genome : 28,846,420 - 28,847,397 (978)
query : 1 - 559 (559/559)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18.5, cyto_nucl 14, extr 7, cyto 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222966)
HIX0222966
HIT000679058 (
ENST00000566007
)
(Conserved hypothetical protein.)
genome : 28,846,916 - 28,848,250 (1,335)
query : 1 - 471 (471/471)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 13.5, extr 8, cyto 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222966)
HIX0222966
HIT000677294 (
ENST00000564162
)
(Conserved hypothetical protein.)
genome : 28,846,990 - 28,848,558 (1,569)
query : 1 - 770 (770/770)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 13.5, nucl 9, extr 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222966)
HIX0222966
HIT000025875
(
AL137587
)
(Conserved hypothetical protein.)
genome : 28,847,381 - 28,848,552 (1,172)
query : 1 - 621 (621/640)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 12, extr 9, nucl 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222966)
HIX0222966
HIT000680045 (
ENST00000567024
)
(Hypothetical protein.)
genome : 28,847,767 - 28,848,553 (787)
query : 1 - 525 (525/525)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 12, extr 9, nucl 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222966)
HIX0222966
HIT000676711 (
ENST00000563565
)
(Hypothetical protein.)
genome : 28,848,251 - 28,848,521 (271)
query : 25 - 295 (271/295)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 0.919
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, cyto_nucl 13, extr 8, nucl 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222966)
HIX0023143
HIT000200160 (
NM_003321
)
(Elongation factor Tu, mitochondrial; EF-Tu; P43; Precursor;)
genome : 28,853,732 - 28,857,729 (3,998)
query : 1 - 2,071 (2,071/2,089)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 31, cyto_mito 17
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023143)
HIX0023143
HIT000119776 (
ENST00000313511
)
(Elongation factor Tu, mitochondrial; EF-Tu; P43; Precursor;)
genome : 28,853,732 - 28,857,729 (3,998)
query : 1 - 2,071 (2,071/2,071)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 31, cyto_mito 17
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023143)
HIX0023143
HIT000030534
(
BC001633
)
(Elongation factor Tu, mitochondrial; EF-Tu; P43; Precursor;)
genome : 28,854,108 - 28,857,635 (3,528)
query : 1 - 1,601 (1,601/1,634)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000795 : Elongation factor, GTP-binding domain
IPR004160 : Translation elongation factor EFTu/EF1A, C-terminal
IPR004161 : Translation elongation factor EFTu/EF1A, domain 2
IPR004541 : Translation elongation factor EFTu/EF1A, bacterial/organelle
IPR009000 : Translation protein, beta-barrel domain
IPR009001 : Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal
GO :
0003746 : Molecular Function : translation elongation factor activity
0003924 : Molecular Function : GTPase activity
0005525 : Molecular Function : GTP binding
0005622 : Cellular Component : intracellular
0006414 : Biological Process : translational elongation
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 31, cyto_mito 17
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023143)
HIX0023143
HIT000324073
(
X84694
)
(Elongation factor Tu, mitochondrial; EF-Tu; P43; Precursor;)
genome : 28,854,108 - 28,857,588 (3,481)
query : 1 - 1,552 (1,552/1,572)
10 exons
identity = 0.997
3'(0.992;1.000;1.000;1.000;0.992;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000795 : Elongation factor, GTP-binding domain
IPR004160 : Translation elongation factor EFTu/EF1A, C-terminal
IPR004161 : Translation elongation factor EFTu/EF1A, domain 2
IPR004541 : Translation elongation factor EFTu/EF1A, bacterial/organelle
IPR009000 : Translation protein, beta-barrel domain
IPR009001 : Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal
GO :
0003746 : Molecular Function : translation elongation factor activity
0003924 : Molecular Function : GTPase activity
0005525 : Molecular Function : GTP binding
0005622 : Cellular Component : intracellular
0006414 : Biological Process : translational elongation
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 31, cyto_mito 17
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023143)
HIX0023143
HIT000034759
(
BC010041
)
Representative transcript
(Elongation factor Tu, mitochondrial; EF-Tu; P43; Precursor;)
genome : 28,854,113 - 28,857,643 (3,531)
query : 1 - 1,604 (1,604/1,627)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000795 : Elongation factor, GTP-binding domain
IPR004160 : Translation elongation factor EFTu/EF1A, C-terminal
IPR004161 : Translation elongation factor EFTu/EF1A, domain 2
IPR004541 : Translation elongation factor EFTu/EF1A, bacterial/organelle
IPR009000 : Translation protein, beta-barrel domain
IPR009001 : Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal
GO :
0003746 : Molecular Function : translation elongation factor activity
0003924 : Molecular Function : GTPase activity
0005525 : Molecular Function : GTP binding
0005622 : Cellular Component : intracellular
0006414 : Biological Process : translational elongation
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 31, cyto_mito 17
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023143)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB172845
Mus
sp. (Mouse) : AK084724
Danio
sp. (Zebrafish) : BC091659
Equus
sp. (Horse) : ENSECAT00000021076
Oryzias
sp. (Medaka) : ENSORLT00000014405
Pongo
sp. (Orangutan) : ENSPPYT00000008506
Rattus
sp. (Rat) : ENSRNOT00000025203
Bos
sp. (Cow) : L38996
Takifugu
sp. (Fugu) : SINFRUT00000158650
Monodelphis
sp. (Opossum) : XM_001369058
Pan
sp. (Chimpanzee) : XM_510904
Canis
sp. (Dog) : XM_536924
HIX0023143
HIT000216609
(
S75463
)
(Elongation factor Tu, mitochondrial; EF-Tu; P43; Precursor;)
genome : 28,854,108 - 28,857,677 (3,570)
query : 9 - 1,638 (1,630/1,644)
10 exons
identity = 0.984
3'(0.997;1.000;1.000;1.000;1.000;0.945;1.000;
1.000;0.995;0.892)5'
coverage = 0.996
InterPro :
IPR000795 : Elongation factor, GTP-binding domain
IPR004160 : Translation elongation factor EFTu/EF1A, C-terminal
IPR004161 : Translation elongation factor EFTu/EF1A, domain 2
IPR004541 : Translation elongation factor EFTu/EF1A, bacterial/organelle
IPR009000 : Translation protein, beta-barrel domain
IPR009001 : Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal
GO :
0003746 : Molecular Function : translation elongation factor activity
0003924 : Molecular Function : GTPase activity
0005525 : Molecular Function : GTP binding
0005622 : Cellular Component : intracellular
0006414 : Biological Process : translational elongation
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 31, cyto_mito 17
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023143)
HIX0023143
HIT000193423
(
L38995
)
(Elongation factor Tu, mitochondrial; EF-Tu; P43; Precursor;)
genome : 28,854,108 - 28,857,588 (3,481)
query : 1 - 1,554 (1,554/1,554)
10 exons
identity = 0.999
3'(1.000;0.992;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000795 : Elongation factor, GTP-binding domain
IPR004160 : Translation elongation factor EFTu/EF1A, C-terminal
IPR004161 : Translation elongation factor EFTu/EF1A, domain 2
IPR004541 : Translation elongation factor EFTu/EF1A, bacterial/organelle
IPR009000 : Translation protein, beta-barrel domain
IPR009001 : Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal
GO :
0003746 : Molecular Function : translation elongation factor activity
0003924 : Molecular Function : GTPase activity
0005525 : Molecular Function : GTP binding
0005622 : Cellular Component : intracellular
0006414 : Biological Process : translational elongation
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 31, cyto_mito 17
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023143)
HIX0023143
HIT000682163 (
ENST00000569217
)
(Translation elongation factor EFTu/EF1A, C-terminal domain containing protein.)
genome : 28,854,159 - 28,855,653 (1,495)
query : 1 - 814 (814/814)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14.1667, cyto 14, cyto_plas 9, nucl 8,
mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023143)
HIX0023143
HIT000689540 (
ENST00000577590
)
(Non-protein coding transcript.)
genome : 28,855,240 - 28,855,328 (89)
query : 1 - 89 (89/89)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023143)
HIX0023143
HIT000725935 (
NR_039872
)
(Non-protein coding transcript.)
genome : 28,855,240 - 28,855,328 (89)
query : 1 - 89 (89/89)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023143)
HIX0023143
HIT000678108 (
ENST00000565012
)
(Elongation factor Tu, mitochondrial; EF-Tu; P43; Precursor;)
genome : 28,855,273 - 28,857,651 (2,379)
query : 1 - 966 (966/966)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14, cyto 9.5, cyto_nucl 7, E.R._mito 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023143)
HIX0023143
HIT000674861 (
ENST00000561644
)
(Elongation factor Tu, mitochondrial; EF-Tu; P43; Precursor;)
genome : 28,855,947 - 28,856,328 (382)
query : 1 - 294 (294/294)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, cyto 11, cyto_nucl 9.5, nucl 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023143)
HIX0017272
HIT000676736 (
ENST00000563591
)
(SH2B adapter protein 1; Pro-rich, PH and SH2 domain-containing signaling mediator; PSM; SH2 domain-containing protein 1B;)
genome : 28,857,921 - 28,877,605 (19,685)
query : 1 - 588 (588/588)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16, nucl 13.5, cyto 13.5, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017272)
HIX0017272
HIT000680543 (
ENST00000567536
)
(Non-protein coding transcript.)
genome : 28,857,964 - 28,880,610 (22,647)
query : 1 - 484 (484/484)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017272)
HIX0017272
HIT000011718
(
AK055104
)
(SH2B adapter protein 1; Pro-rich, PH and SH2 domain-containing signaling mediator; PSM; SH2 domain-containing protein 1B;)
genome : 28,858,010 - 28,885,526 (27,517)
query : 1 - 3,095 (3,095/3,095)
11 exons
identity = 0.998
5'(1.000;0.977;1.000;1.000;1.000;1.000;1.000;
0.995;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR000980 : SH2 domain
IPR001849 : Pleckstrin homology domain
IPR015012 : Phenylalanine zipper
GO :
0004871 : Molecular Function : signal transducer activity
0005515 : Molecular Function : protein binding
0035556 : Biological Process : intracellular signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25, cyto_nucl 16.5, cyto 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017272)
HIX0017272
HIT000123211 (
ENST00000322610
)
(SH2B adapter protein 1; Pro-rich, PH and SH2 domain-containing signaling mediator; PSM; SH2 domain-containing protein 1B;)
genome : 28,858,010 - 28,885,526 (27,517)
query : 1 - 3,095 (3,095/3,095)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24.5, cyto_nucl 17, cyto 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017272)
HIX0223742
HIT000680733 (
ENST00000567731
)
(Conserved hypothetical protein.)
genome : 28,873,487 - 28,874,661 (1,175)
query : 1 - 544 (544/544)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0223742)
HIX0017272
HIT000001014
(
AB037720
)
Representative transcript
(SH2B adapter protein 1 isoform 2.)
genome : 28,874,125 - 28,885,522 (11,398)
query : 1 - 6,043 (6,043/6,043)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto_nucl 16.5, cyto 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017272)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK148085
Danio
sp. (Zebrafish) : BC133102
Gallus
sp. (Chicken) : ENSGALT00000002828
Monodelphis
sp. (Opossum) : ENSMODT00000029278
Pan
sp. (Chimpanzee) : ENSPTRT00000014650
Tetraodon
sp. (Tetraodon) : GSTENT00012344001
Macaca
sp. (Macaque) : XM_001096611
Equus
sp. (Horse) : XM_001502234
Canis
sp. (Dog) : XM_844778
Bos
sp. (Cow) : XM_866979
HIX0017272
HIT000130376 (
ENST00000337120
)
(SH2B adapter protein 1 isoform 2.)
genome : 28,874,125 - 28,885,522 (11,398)
query : 1 - 6,043 (6,043/6,043)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto_nucl 16.5, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017272)
HIX0017272
HIT000679255 (
ENST00000566209
)
(SH2B adapter protein 1; Pro-rich, PH and SH2 domain-containing signaling mediator; PSM; SH2 domain-containing protein 1B;)
genome : 28,874,351 - 28,877,585 (3,235)
query : 1 - 533 (533/533)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto 7.5, cyto_nucl 7.5, cyto_pero 6.16667,
nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017272)
HIX0017272
HIT000493193
(
AK298569
)
(SH2B adapter protein 1 isoform 3.)
genome : 28,874,880 - 28,884,948 (10,069)
query : 1 - 1,488 (1,488/1,488)
9 exons
identity = 0.999
5'(1.000;1.000;1.000;0.994;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000980 : SH2 domain
IPR001849 : Pleckstrin homology domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12, cyto_nucl 10.1667, mito 8, cyto 6,
cyto_pero 4.66667, extr 4, E.R._mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017272)
HIX0017272
HIT000644615 (
ENST00000545570
)
(SH2B adapter protein 1 isoform 3.)
genome : 28,874,880 - 28,884,948 (10,069)
query : 1 - 1,488 (1,488/1,488)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12, cyto_nucl 10.1667, mito 8, cyto 6,
cyto_pero 4.66667, extr 4, E.R._mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017272)
HIX0017272
HIT000561496 (
NM_001145795
)
(SH2B adapter protein 1; Pro-rich, PH and SH2 domain-containing signaling mediator; PSM; SH2 domain-containing protein 1B;)
genome : 28,875,078 - 28,885,534 (10,457)
query : 1 - 2,936 (2,936/2,946)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24.5, cyto_nucl 17, cyto 4.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017272)
HIX0017272
HIT000561497 (
NM_001145796
)
(SH2B adapter protein 1 isoform 2.)
genome : 28,875,078 - 28,885,534 (10,457)
query : 1 - 3,036 (3,036/3,046)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto_nucl 16.5, cyto 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017272)
HIX0017272
HIT000561498 (
NM_001145797
)
(SH2B adapter protein 1 isoform 3.)
genome : 28,875,078 - 28,885,534 (10,457)
query : 1 - 3,089 (3,089/3,099)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25, cyto_nucl 16.5, cyto 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017272)
HIX0017272
HIT000312847 (
ENST00000359285
)
(SH2B adapter protein 1 isoform 3.)
genome : 28,875,126 - 28,885,526 (10,401)
query : 1 - 3,033 (3,033/3,033)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25, cyto_nucl 16.5, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017272)
HIX0017272
HIT000491704
(
AK297080
)
(SH2B adapter protein 1; Pro-rich, PH and SH2 domain-containing signaling mediator; PSM; SH2 domain-containing protein 1B;)
genome : 28,875,127 - 28,885,144 (10,018)
query : 1 - 1,532 (1,532/1,532)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000980 : SH2 domain
IPR001849 : Pleckstrin homology domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, cyto_nucl 14, cyto 8, extr 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017272)
HIX0017272
HIT000637387 (
ENST00000538342
)
(SH2B adapter protein 1; Pro-rich, PH and SH2 domain-containing signaling mediator; PSM; SH2 domain-containing protein 1B;)
genome : 28,875,127 - 28,885,144 (10,018)
query : 1 - 1,532 (1,532/1,532)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, cyto_nucl 14, cyto 8, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017272)
HIX0017272
HIT000676818 (
ENST00000563674
)
(SH2B adapter protein 1; Pro-rich, PH and SH2 domain-containing signaling mediator; PSM; SH2 domain-containing protein 1B;)
genome : 28,875,199 - 28,885,076 (9,878)
query : 1 - 719 (719/719)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, cyto_nucl 9.5, cyto 9, nucl 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017272)
HIX0017272
HIT000074484
(
AF227967
)
(SH2B adapter protein 1; Pro-rich, PH and SH2 domain-containing signaling mediator; PSM; SH2 domain-containing protein 1B;)
genome : 28,875,224 - 28,885,526 (10,303)
query : 3 - 2,784 (2,782/2,793)
9 exons
identity = 0.999
5'(1.000;0.999;1.000;1.000;0.989;0.995;1.000;
1.000;1.000)3'
coverage = 0.996
InterPro :
IPR000980 : SH2 domain
IPR001849 : Pleckstrin homology domain
IPR015012 : Phenylalanine zipper
GO :
0004871 : Molecular Function : signal transducer activity
0005515 : Molecular Function : protein binding
0035556 : Biological Process : intracellular signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24.5, cyto_nucl 17, cyto 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017272)
HIX0017272
HIT000074485
(
AF227968
)
(SH2B adapter protein 1; Pro-rich, PH and SH2 domain-containing signaling mediator; PSM; SH2 domain-containing protein 1B;)
genome : 28,875,224 - 28,885,526 (10,303)
query : 3 - 2,884 (2,882/2,893)
10 exons
identity = 0.999
5'(1.000;0.999;1.000;1.000;0.989;0.995;1.000;
1.000;1.000;1.000)3'
coverage = 0.996
InterPro :
IPR000980 : SH2 domain
IPR001849 : Pleckstrin homology domain
IPR015012 : Phenylalanine zipper
GO :
0004871 : Molecular Function : signal transducer activity
0005515 : Molecular Function : protein binding
0035556 : Biological Process : intracellular signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto_nucl 16.5, cyto 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017272)
HIX0017272
HIT000074486
(
AF227969
)
(SH2B adapter protein 1 isoform 3.)
genome : 28,875,224 - 28,885,526 (10,303)
query : 3 - 2,937 (2,935/2,946)
10 exons
identity = 0.999
5'(1.000;0.999;1.000;1.000;0.989;0.995;1.000;
1.000;1.000;1.000)3'
coverage = 0.996
InterPro :
IPR000980 : SH2 domain
IPR001849 : Pleckstrin homology domain
IPR015012 : Phenylalanine zipper
GO :
0004871 : Molecular Function : signal transducer activity
0005515 : Molecular Function : protein binding
0035556 : Biological Process : intracellular signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25, cyto_nucl 16.5, cyto 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017272)
HIX0017272
HIT000561504 (
NM_001145812
)
(SH2B adapter protein 1 isoform 2.)
genome : 28,875,296 - 28,885,534 (10,239)
query : 1 - 3,135 (3,135/3,145)
10 exons
identity = 0.998
5'(0.993;0.997;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto_nucl 16.5, cyto 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017272)
HIX0017272
HIT000423129
(
AK290332
)
(SH2B adapter protein 1 isoform 2.)
genome : 28,875,296 - 28,884,928 (9,633)
query : 1 - 2,529 (2,529/2,529)
10 exons
identity = 0.997
5'(0.993;0.996;1.000;1.000;1.000;1.000;0.995;
1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000980 : SH2 domain
IPR001849 : Pleckstrin homology domain
IPR015012 : Phenylalanine zipper
GO :
0004871 : Molecular Function : signal transducer activity
0005515 : Molecular Function : protein binding
0035556 : Biological Process : intracellular signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto_nucl 16.5, cyto 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017272)
HIX0017272
HIT000478902 (
ENST00000395532
)
(SH2B adapter protein 1 isoform 2.)
genome : 28,875,296 - 28,884,928 (9,633)
query : 1 - 2,529 (2,529/2,529)
10 exons
identity = 0.998
5'(0.993;0.997;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto_nucl 16.5, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017272)
HIX0017272
HIT000026683
(
AL713760
)
(SH2B adapter protein 1; Pro-rich, PH and SH2 domain-containing signaling mediator; PSM; SH2 domain-containing protein 1B;)
genome : 28,875,314 - 28,885,526 (10,213)
query : 1 - 4,858 (4,858/4,876)
9 exons
identity = 0.999
5'(0.999;1.000;1.000;1.000;0.995;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000980 : SH2 domain
IPR001849 : Pleckstrin homology domain
IPR015012 : Phenylalanine zipper
GO :
0004871 : Molecular Function : signal transducer activity
0005515 : Molecular Function : protein binding
0035556 : Biological Process : intracellular signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto_nucl 16.5, cyto 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017272)
HIX0017272
HIT000205506 (
NM_015503
)
(SH2B adapter protein 1 isoform 2.)
genome : 28,875,314 - 28,885,534 (10,221)
query : 1 - 4,866 (4,866/4,876)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto_nucl 16.5, cyto 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017272)
HIX0017272
HIT000035054
(
BC010704
)
(SH2B adapter protein 1; Pro-rich, PH and SH2 domain-containing signaling mediator; PSM; SH2 domain-containing protein 1B;)
genome : 28,877,591 - 28,885,534 (7,944)
query : 1 - 2,589 (2,589/2,606)
9 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;0.995;0.995;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000980 : SH2 domain
IPR001849 : Pleckstrin homology domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25.5, cyto_nucl 14.5, cyto 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017272)
HIX0017272
HIT000023835
(
AL049924
)
(SH2B adapter protein 1 isoform 3.)
genome : 28,877,844 - 28,885,526 (7,683)
query : 1 - 2,381 (2,381/2,391)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000980 : SH2 domain
IPR001849 : Pleckstrin homology domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17.5, cyto_nucl 12, mito 9, cyto 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017272)
HIX0017272
HIT000679223 (
ENST00000566176
)
(SH2B adapter protein 1; Pro-rich, PH and SH2 domain-containing signaling mediator; PSM; SH2 domain-containing protein 1B;)
genome : 28,877,956 - 28,883,276 (5,321)
query : 1 - 546 (546/546)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17.5, cyto_nucl 16.5, cyto 10.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017272)
HIX0017272
HIT000010760
(
AK027488
)
(SH2B adapter protein 1 isoform 2.)
genome : 28,877,979 - 28,885,533 (7,555)
query : 1 - 2,200 (2,200/2,200)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;0.995;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000980 : SH2 domain
IPR001849 : Pleckstrin homology domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17.5, cyto_nucl 15.5, cyto 12.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017272)
HIX0017272
HIT000674847 (
ENST00000561629
)
(SH2B adapter protein 2; Adapter protein with pleckstrin homology and Src homology 2 domains; SH2 and PH domain-containing adapter protein APS;)
genome : 28,878,475 - 28,883,235 (4,761)
query : 1 - 613 (613/613)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17.5, cyto_nucl 14.5, extr 8, cyto 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017272)
HIX0017272
HIT000682413 (
ENST00000569471
)
(SH2B adapter protein 1; Pro-rich, PH and SH2 domain-containing signaling mediator; PSM; SH2 domain-containing protein 1B;)
genome : 28,880,528 - 28,883,711 (3,184)
query : 4 - 791 (788/791)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 0.996
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18.5, cyto_nucl 15.5, cyto 9.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017272)
HIX0017272
HIT000682587 (
ENST00000569651
)
(SH2B adapter protein 1 isoform 3.)
genome : 28,883,574 - 28,885,214 (1,641)
query : 1 - 821 (821/821)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito_nucl 13.8333, mito 13, nucl 12.5,
cyto_nucl 7.16667, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017272)
HIX0017272
HIT000681827 (
ENST00000568868
)
(SH2B adapter protein 1 isoform 3.)
genome : 28,883,661 - 28,884,134 (474)
query : 1 - 342 (342/342)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 13.5, extr 6, cyto 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017272)
HIX0023254
HIT000310985 (
ENST00000357084
)
(Sarcoplasmic/endoplasmic reticulum calcium ATPase 1; SERCA1; SR Ca(2+)-ATPase 1; EC=3.6.3.8; Calcium pump 1; Calcium-transporting ATPase sarcoplasmic reticulum type, fast twitch skeletal muscle isoform; Endoplasmic reticulum class 1/2 Ca(2+) ATPase;)
genome : 28,889,726 - 28,915,785 (26,060)
query : 1 - 3,532 (3,532/3,532)
22 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
EC number :
EC 3.6.3.8
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023254)
HIX0023254
HIT000201074 (
NM_004320
)
(Sarcoplasmic/endoplasmic reticulum calcium ATPase 1; SERCA1; SR Ca(2+)-ATPase 1; EC=3.6.3.8; Calcium pump 1; Calcium-transporting ATPase sarcoplasmic reticulum type, fast twitch skeletal muscle isoform; Endoplasmic reticulum class 1/2 Ca(2+) ATPase;)
genome : 28,889,809 - 28,915,830 (26,022)
query : 1 - 3,536 (3,536/3,570)
23 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.6.3.8
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023254)
HIX0023254
HIT000214820 (
NM_173201
)
(Sarcoplasmic/endoplasmic reticulum calcium ATPase 1; SERCA1; SR Ca(2+)-ATPase 1; EC=3.6.3.8; Calcium pump 1; Calcium-transporting ATPase sarcoplasmic reticulum type, fast twitch skeletal muscle isoform; Endoplasmic reticulum class 1/2 Ca(2+) ATPase;)
genome : 28,889,809 - 28,915,830 (26,022)
query : 1 - 3,494 (3,494/3,528)
22 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
EC number :
EC 3.6.3.8
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023254)
HIX0023254
HIT000478873 (
ENST00000395503
)
(Sarcoplasmic/endoplasmic reticulum calcium ATPase 1; SERCA1; SR Ca(2+)-ATPase 1; EC=3.6.3.8; Calcium pump 1; Calcium-transporting ATPase sarcoplasmic reticulum type, fast twitch skeletal muscle isoform; Endoplasmic reticulum class 1/2 Ca(2+) ATPase;)
genome : 28,889,809 - 28,915,830 (26,022)
query : 1 - 3,536 (3,536/3,536)
23 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.6.3.8
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023254)
HIX0023254
HIT000056014
(
BX647367
)
(Sarcoplasmic/endoplasmic reticulum calcium ATPase 1; SERCA1; SR Ca(2+)-ATPase 1; EC=3.6.3.8; Calcium pump 1; Calcium-transporting ATPase sarcoplasmic reticulum type, fast twitch skeletal muscle isoform; Endoplasmic reticulum class 1/2 Ca(2+) ATPase;)
genome : 28,889,809 - 28,915,786 (25,978)
query : 1 - 3,492 (3,492/3,511)
23 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.997;1.000;1.000;0.990;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.993;1.000;0.992;
1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.6.3.8
InterPro :
IPR001757 : P-type ATPase
IPR004014 : Cation-transporting P-type ATPase, N-terminal
IPR005782 : P-type ATPase, subfamily IIA, SERCA-type
IPR006068 : Cation-transporting P-type ATPase, C-terminal
IPR008250 : P-type ATPase, A domain
IPR018303 : P-type ATPase, phosphorylation site
IPR023214 : HAD-like domain
IPR023298 : P-type ATPase, transmembrane domain
IPR023299 : P-type ATPase, cytoplasmic domain N
GO :
0000166 : Molecular Function : nucleotide binding
0005388 : Molecular Function : calcium-transporting ATPase activity
0006812 : Biological Process : cation transport
0006816 : Biological Process : calcium ion transport
0016021 : Cellular Component : integral component of membrane
0019829 : Molecular Function : cation-transporting ATPase activity
0046872 : Molecular Function : metal ion binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023254)
HIX0023254
HIT000054569
(
BX537784
)
(Sarcoplasmic/endoplasmic reticulum calcium ATPase 1; SERCA1; SR Ca(2+)-ATPase 1; EC=3.6.3.8; Calcium pump 1; Calcium-transporting ATPase sarcoplasmic reticulum type, fast twitch skeletal muscle isoform; Endoplasmic reticulum class 1/2 Ca(2+) ATPase;)
genome : 28,889,811 - 28,915,830 (26,020)
query : 1 - 3,534 (3,534/3,622)
23 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;0.993;1.000;1.000;
0.997;1.000;1.000;0.990;1.000;1.000;0.995;
1.000;1.000;0.990;1.000;1.000;1.000;0.992;
1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.6.3.8
InterPro :
IPR001757 : P-type ATPase
IPR004014 : Cation-transporting P-type ATPase, N-terminal
IPR005782 : P-type ATPase, subfamily IIA, SERCA-type
IPR006068 : Cation-transporting P-type ATPase, C-terminal
IPR008250 : P-type ATPase, A domain
IPR018303 : P-type ATPase, phosphorylation site
IPR023214 : HAD-like domain
IPR023298 : P-type ATPase, transmembrane domain
IPR023299 : P-type ATPase, cytoplasmic domain N
GO :
0000166 : Molecular Function : nucleotide binding
0005388 : Molecular Function : calcium-transporting ATPase activity
0006812 : Biological Process : cation transport
0006816 : Biological Process : calcium ion transport
0016021 : Cellular Component : integral component of membrane
0019829 : Molecular Function : cation-transporting ATPase activity
0046872 : Molecular Function : metal ion binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023254)
HIX0023254
HIT000057191
(
BX648544
)
(Sarcoplasmic/endoplasmic reticulum calcium ATPase 1; SERCA1; SR Ca(2+)-ATPase 1; EC=3.6.3.8; Calcium pump 1; Calcium-transporting ATPase sarcoplasmic reticulum type, fast twitch skeletal muscle isoform; Endoplasmic reticulum class 1/2 Ca(2+) ATPase;)
genome : 28,889,813 - 28,915,792 (25,980)
query : 2 - 3,495 (3,494/3,513)
23 exons
identity = 0.997
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.997;0.994;1.000;1.000;1.000;1.000;0.995;
0.994;1.000;1.000;1.000;0.993;0.992;0.992;
1.000;0.997)3'
coverage = 0.999
EC number :
EC 3.6.3.8
InterPro :
IPR001757 : P-type ATPase
IPR004014 : Cation-transporting P-type ATPase, N-terminal
IPR005782 : P-type ATPase, subfamily IIA, SERCA-type
IPR006068 : Cation-transporting P-type ATPase, C-terminal
IPR008250 : P-type ATPase, A domain
IPR018303 : P-type ATPase, phosphorylation site
IPR023214 : HAD-like domain
IPR023298 : P-type ATPase, transmembrane domain
IPR023299 : P-type ATPase, cytoplasmic domain N
GO :
0000166 : Molecular Function : nucleotide binding
0005388 : Molecular Function : calcium-transporting ATPase activity
0006812 : Biological Process : cation transport
0006816 : Biological Process : calcium ion transport
0016021 : Cellular Component : integral component of membrane
0019829 : Molecular Function : cation-transporting ATPase activity
0046872 : Molecular Function : metal ion binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023254)
HIX0023254
HIT000056012
(
BX647365
)
(Sarcoplasmic/endoplasmic reticulum calcium ATPase 1; SERCA1; SR Ca(2+)-ATPase 1; EC=3.6.3.8; Calcium pump 1; Calcium-transporting ATPase sarcoplasmic reticulum type, fast twitch skeletal muscle isoform; Endoplasmic reticulum class 1/2 Ca(2+) ATPase;)
genome : 28,889,813 - 28,915,787 (25,975)
query : 1 - 3,353 (3,353/3,518)
22 exons
identity = 0.996
5'(0.997;1.000;1.000;1.000;1.000;1.000;1.000;
0.997;0.994;0.989;1.000;0.992;1.000;1.000;
0.997;1.000;1.000;1.000;1.000;1.000;1.000;
0.954)3'
coverage = 1.000
EC number :
EC 3.6.3.8
InterPro :
IPR001757 : P-type ATPase
IPR004014 : Cation-transporting P-type ATPase, N-terminal
IPR005782 : P-type ATPase, subfamily IIA, SERCA-type
IPR006068 : Cation-transporting P-type ATPase, C-terminal
IPR008250 : P-type ATPase, A domain
IPR018303 : P-type ATPase, phosphorylation site
IPR023214 : HAD-like domain
IPR023298 : P-type ATPase, transmembrane domain
IPR023299 : P-type ATPase, cytoplasmic domain N
GO :
0000166 : Molecular Function : nucleotide binding
0005388 : Molecular Function : calcium-transporting ATPase activity
0006812 : Biological Process : cation transport
0006816 : Biological Process : calcium ion transport
0016021 : Cellular Component : integral component of membrane
0019829 : Molecular Function : cation-transporting ATPase activity
0046872 : Molecular Function : metal ion binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023254)
HIX0023254
HIT000054204
(
BX537389
)
(Sarcoplasmic/endoplasmic reticulum calcium ATPase 1; SERCA1; SR Ca(2+)-ATPase 1; EC=3.6.3.8; Calcium pump 1; Calcium-transporting ATPase sarcoplasmic reticulum type, fast twitch skeletal muscle isoform; Endoplasmic reticulum class 1/2 Ca(2+) ATPase;)
genome : 28,889,813 - 28,915,785 (25,973)
query : 1 - 3,487 (3,487/3,501)
23 exons
identity = 0.999
5'(0.997;1.000;1.000;1.000;1.000;1.000;1.000;
0.997;1.000;1.000;1.000;1.000;1.000;0.995;
0.997;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.996)3'
coverage = 1.000
EC number :
EC 3.6.3.8
InterPro :
IPR001757 : P-type ATPase
IPR004014 : Cation-transporting P-type ATPase, N-terminal
IPR005782 : P-type ATPase, subfamily IIA, SERCA-type
IPR006068 : Cation-transporting P-type ATPase, C-terminal
IPR008250 : P-type ATPase, A domain
IPR018303 : P-type ATPase, phosphorylation site
IPR023214 : HAD-like domain
IPR023298 : P-type ATPase, transmembrane domain
IPR023299 : P-type ATPase, cytoplasmic domain N
GO :
0000166 : Molecular Function : nucleotide binding
0005388 : Molecular Function : calcium-transporting ATPase activity
0006812 : Biological Process : cation transport
0006816 : Biological Process : calcium ion transport
0016021 : Cellular Component : integral component of membrane
0019829 : Molecular Function : cation-transporting ATPase activity
0046872 : Molecular Function : metal ion binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023254)
HIX0023254
HIT000337746
(
BC104452
)
(Sarcoplasmic/endoplasmic reticulum calcium ATPase 1; SERCA1; SR Ca(2+)-ATPase 1; EC=3.6.3.8; Calcium pump 1; Calcium-transporting ATPase sarcoplasmic reticulum type, fast twitch skeletal muscle isoform; Endoplasmic reticulum class 1/2 Ca(2+) ATPase;)
genome : 28,889,815 - 28,915,661 (25,847)
query : 1 - 404 (404/404)
5 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;0.994)3'
coverage = 1.000
EC number :
EC 3.6.3.8
InterPro :
IPR023298 : P-type ATPase, transmembrane domain
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 14, mito 12, extr 6, E.R._mito 6, mito_pero 6,
mito_nucl 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023254)
HIX0023254
HIT000337747
(
BC104453
)
(Conserved hypothetical protein.)
genome : 28,889,815 - 28,915,661 (25,847)
query : 1 - 404 (404/404)
5 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;0.994)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto_nucl 8.5, extr_plas 8.5, nucl 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023254)
HIX0023254
HIT000056013
(
BX647366
)
(Sarcoplasmic/endoplasmic reticulum calcium ATPase 1; SERCA1; SR Ca(2+)-ATPase 1; EC=3.6.3.8; Calcium pump 1; Calcium-transporting ATPase sarcoplasmic reticulum type, fast twitch skeletal muscle isoform; Endoplasmic reticulum class 1/2 Ca(2+) ATPase;)
genome : 28,889,817 - 28,915,785 (25,969)
query : 1 - 3,483 (3,483/3,503)
23 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;0.993;1.000;0.988;
0.987;0.994;1.000;1.000;1.000;1.000;0.995;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.6.3.8
InterPro :
IPR001757 : P-type ATPase
IPR004014 : Cation-transporting P-type ATPase, N-terminal
IPR005782 : P-type ATPase, subfamily IIA, SERCA-type
IPR006068 : Cation-transporting P-type ATPase, C-terminal
IPR008250 : P-type ATPase, A domain
IPR018303 : P-type ATPase, phosphorylation site
IPR023214 : HAD-like domain
IPR023298 : P-type ATPase, transmembrane domain
IPR023299 : P-type ATPase, cytoplasmic domain N
GO :
0000166 : Molecular Function : nucleotide binding
0005388 : Molecular Function : calcium-transporting ATPase activity
0006812 : Biological Process : cation transport
0006816 : Biological Process : calcium ion transport
0016021 : Cellular Component : integral component of membrane
0019829 : Molecular Function : cation-transporting ATPase activity
0046872 : Molecular Function : metal ion binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023254)
HIX0023254
HIT000057719
(
BX649072
)
(Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 isoform a.)
genome : 28,889,821 - 28,915,787 (25,967)
query : 2 - 3,481 (3,480/3,500)
23 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;0.993;1.000;1.000;
0.997;1.000;1.000;0.990;1.000;1.000;0.995;
0.997;1.000;1.000;1.000;1.000;0.983;1.000;
1.000;1.000)3'
coverage = 0.999
EC number :
EC 3.6.3.8
InterPro :
IPR001757 : P-type ATPase
IPR004014 : Cation-transporting P-type ATPase, N-terminal
IPR005782 : P-type ATPase, subfamily IIA, SERCA-type
IPR006068 : Cation-transporting P-type ATPase, C-terminal
IPR008250 : P-type ATPase, A domain
IPR018303 : P-type ATPase, phosphorylation site
IPR023214 : HAD-like domain
IPR023298 : P-type ATPase, transmembrane domain
IPR023299 : P-type ATPase, cytoplasmic domain N
GO :
0000166 : Molecular Function : nucleotide binding
0005388 : Molecular Function : calcium-transporting ATPase activity
0006812 : Biological Process : cation transport
0006816 : Biological Process : calcium ion transport
0016021 : Cellular Component : integral component of membrane
0019829 : Molecular Function : cation-transporting ATPase activity
0046872 : Molecular Function : metal ion binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023254)
HIX0023254
HIT000424111
(
AK291314
)
Representative transcript
(Sarcoplasmic/endoplasmic reticulum calcium ATPase 1; SERCA1; SR Ca(2+)-ATPase 1; EC=3.6.3.8; Calcium pump 1; Calcium-transporting ATPase sarcoplasmic reticulum type, fast twitch skeletal muscle isoform; Endoplasmic reticulum class 1/2 Ca(2+) ATPase;)
genome : 28,889,881 - 28,915,778 (25,898)
query : 2 - 3,413 (3,412/3,413)
23 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.996)3'
coverage = 1.000
EC number :
EC 3.6.3.8
InterPro :
IPR001757 : P-type ATPase
IPR004014 : Cation-transporting P-type ATPase, N-terminal
IPR005782 : P-type ATPase, subfamily IIA, SERCA-type
IPR006068 : Cation-transporting P-type ATPase, C-terminal
IPR008250 : P-type ATPase, A domain
IPR018303 : P-type ATPase, phosphorylation site
IPR023214 : HAD-like domain
IPR023298 : P-type ATPase, transmembrane domain
IPR023299 : P-type ATPase, cytoplasmic domain N
GO :
0000166 : Molecular Function : nucleotide binding
0005388 : Molecular Function : calcium-transporting ATPase activity
0006812 : Biological Process : cation transport
0006816 : Biological Process : calcium ion transport
0016021 : Cellular Component : integral component of membrane
0019829 : Molecular Function : cation-transporting ATPase activity
0046872 : Molecular Function : metal ion binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023254)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AY081946
Danio
sp. (Zebrafish) : BC045327
Danio
sp. (Zebrafish) : BC085636
Bos
sp. (Cow) : BC119938
Tetraodon
sp. (Tetraodon) : CR725132
Oryzias
sp. (Medaka) : ENSORLT00000007471
Pongo
sp. (Orangutan) : ENSPPYT00000008505
Rattus
sp. (Rat) : J04022
Takifugu
sp. (Fugu) : SINFRUT00000166147
Takifugu
sp. (Fugu) : SINFRUT00000169724
Takifugu
sp. (Fugu) : SINFRUT00000181885
Pan
sp. (Chimpanzee) : XM_001142958
Monodelphis
sp. (Opossum) : XM_001369107
Equus
sp. (Horse) : XM_001502262
Canis
sp. (Dog) : XM_536925
Macaca
sp. (Macaque) : XR_011823
Gallus
sp. (Chicken) : Y18063
HIX0023254
HIT000094824
(
BC037354
)
(Sarcoplasmic/endoplasmic reticulum calcium ATPase 1; SERCA1; SR Ca(2+)-ATPase 1; EC=3.6.3.8; Calcium pump 1; Calcium-transporting ATPase sarcoplasmic reticulum type, fast twitch skeletal muscle isoform; Endoplasmic reticulum class 1/2 Ca(2+) ATPase;)
genome : 28,889,881 - 28,915,785 (25,905)
query : 1 - 2,556 (2,556/2,602)
18 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.981)3'
coverage = 1.000
EC number :
EC 3.6.3.8
InterPro :
IPR001757 : P-type ATPase
IPR004014 : Cation-transporting P-type ATPase, N-terminal
IPR005782 : P-type ATPase, subfamily IIA, SERCA-type
IPR008250 : P-type ATPase, A domain
IPR018303 : P-type ATPase, phosphorylation site
IPR023214 : HAD-like domain
IPR023298 : P-type ATPase, transmembrane domain
IPR023299 : P-type ATPase, cytoplasmic domain N
GO :
0000166 : Molecular Function : nucleotide binding
0005388 : Molecular Function : calcium-transporting ATPase activity
0006812 : Biological Process : cation transport
0006816 : Biological Process : calcium ion transport
0016021 : Cellular Component : integral component of membrane
0019829 : Molecular Function : cation-transporting ATPase activity
0046872 : Molecular Function : metal ion binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023254)
HIX0023254
HIT000677113 (
ENST00000563975
)
(Sarcoplasmic/endoplasmic reticulum calcium ATPase 2; SERCA2; SR Ca(2+)-ATPase 2; EC=3.6.3.8; Calcium pump 2; Calcium-transporting ATPase sarcoplasmic reticulum type, slow twitch skeletal muscle isoform; Endoplasmic reticulum class 1/2 Ca(2+) ATPase;)
genome : 28,890,182 - 28,893,872 (3,691)
query : 1 - 545 (545/545)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.6.3.8
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 24, lyso 4, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023254)
HIX0023254
HIT000726588 (
NR_046287
)
(Sarcoplasmic/endoplasmic reticulum calcium ATPase 2; SERCA2; SR Ca(2+)-ATPase 2; EC=3.6.3.8; Calcium pump 2; Calcium-transporting ATPase sarcoplasmic reticulum type, slow twitch skeletal muscle isoform; Endoplasmic reticulum class 1/2 Ca(2+) ATPase;)
genome : 28,890,278 - 28,891,242 (965)
query : 8 - 591 (584/591)
2 exons
identity = 0.985
5'(1.000;0.980)3'
coverage = 0.988
EC number :
EC 3.6.3.8
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 9, plas 6.5, cyto_pero 6.5, nucl 6, extr_plas 5,
E.R. 4, pero 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023254)
HIX0023254
HIT000726589 (
NR_046288
)
(Sarcoplasmic/endoplasmic reticulum calcium ATPase 2; SERCA2; SR Ca(2+)-ATPase 2; EC=3.6.3.8; Calcium pump 2; Calcium-transporting ATPase sarcoplasmic reticulum type, slow twitch skeletal muscle isoform; Endoplasmic reticulum class 1/2 Ca(2+) ATPase;)
genome : 28,890,278 - 28,891,242 (965)
query : 8 - 588 (581/588)
2 exons
identity = 0.990
5'(0.962;1.000)3'
coverage = 0.988
EC number :
EC 3.6.3.8
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 9, plas 6.5, cyto_pero 6.5, nucl 6, extr_plas 5,
E.R. 4, pero 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023254)
HIX0223229
HIT000726590 (
NR_046289
)
(Hypothetical short protein.)
genome : 28,890,278 - 28,891,242 (965)
query : 1 - 531 (531/538)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 0.987
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, nucl 11.5, cyto_nucl 9.5, cyto 4.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0223229)
HIX0223229
HIT000726591 (
NR_046290
)
(Hypothetical short protein.)
genome : 28,890,278 - 28,891,242 (965)
query : 1 - 528 (528/535)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 0.987
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, nucl 11.5, cyto_nucl 9.5, cyto 4.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0223229)
HIX0223229
HIT000679979 (
ENST00000566956
)
(Hypothetical short protein.)
genome : 28,890,278 - 28,891,241 (964)
query : 1 - 530 (530/530)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, nucl 11.5, cyto_nucl 9.5, cyto 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0223229)
HIX0023254
HIT000674767 (
ENST00000561547
)
(Sarcoplasmic/endoplasmic reticulum calcium ATPase 2; SERCA2; SR Ca(2+)-ATPase 2; EC=3.6.3.8; Calcium pump 2; Calcium-transporting ATPase sarcoplasmic reticulum type, slow twitch skeletal muscle isoform; Endoplasmic reticulum class 1/2 Ca(2+) ATPase;)
genome : 28,890,278 - 28,891,216 (939)
query : 1 - 558 (558/558)
2 exons
identity = 0.984
5'(1.000;0.979)3'
coverage = 1.000
EC number :
EC 3.6.3.8
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 9, plas 6.5, cyto_pero 6.5, nucl 6, extr_plas 5,
E.R. 4, pero 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023254)
HIX0023254
HIT000675390 (
ENST00000562185
)
(Sarcoplasmic/endoplasmic reticulum calcium ATPase 1; SERCA1; SR Ca(2+)-ATPase 1; EC=3.6.3.8; Calcium pump 1; Calcium-transporting ATPase sarcoplasmic reticulum type, fast twitch skeletal muscle isoform; Endoplasmic reticulum class 1/2 Ca(2+) ATPase;)
genome : 28,890,564 - 28,893,901 (3,338)
query : 1 - 576 (576/576)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.6.3.8
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 23, lyso 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023254)
HIX0023254
HIT000048329
(
AK128456
)
(Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 isoform a.)
genome : 28,891,374 - 28,915,785 (24,412)
query : 1 - 3,130 (3,130/3,130)
21 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;0.997;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.6.3.8
InterPro :
IPR001757 : P-type ATPase
IPR005782 : P-type ATPase, subfamily IIA, SERCA-type
IPR006068 : Cation-transporting P-type ATPase, C-terminal
IPR008250 : P-type ATPase, A domain
IPR018303 : P-type ATPase, phosphorylation site
IPR023214 : HAD-like domain
IPR023298 : P-type ATPase, transmembrane domain
IPR023299 : P-type ATPase, cytoplasmic domain N
GO :
0000166 : Molecular Function : nucleotide binding
0005388 : Molecular Function : calcium-transporting ATPase activity
0006812 : Biological Process : cation transport
0006816 : Biological Process : calcium ion transport
0016021 : Cellular Component : integral component of membrane
0019829 : Molecular Function : cation-transporting ATPase activity
0046872 : Molecular Function : metal ion binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023254)
HIX0023254
HIT000635421 (
ENST00000536376
)
(Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 isoform a.)
genome : 28,891,374 - 28,915,785 (24,412)
query : 1 - 3,130 (3,130/3,130)
21 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.6.3.8
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023254)
HIX0212221
HIT000616055 (
ENST00000516652
)
(Hypothetical short protein.)
genome : 28,892,801 - 28,892,928 (128)
query : 1 - 128 (128/128)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0212221)
HIX0023254
HIT000056015
(
BX647368
)
(Sarcoplasmic/endoplasmic reticulum calcium ATPase 1; SERCA1; SR Ca(2+)-ATPase 1; EC=3.6.3.8; Calcium pump 1; Calcium-transporting ATPase sarcoplasmic reticulum type, fast twitch skeletal muscle isoform; Endoplasmic reticulum class 1/2 Ca(2+) ATPase;)
genome : 28,898,894 - 28,915,785 (16,892)
query : 1 - 2,527 (2,527/2,544)
16 exons
identity = 0.996
5'(1.000;0.994;1.000;1.000;1.000;1.000;1.000;
0.994;0.995;0.980;0.988;1.000;1.000;0.992;
1.000;0.996)3'
coverage = 1.000
EC number :
EC 3.6.3.8
InterPro :
IPR001757 : P-type ATPase
IPR005782 : P-type ATPase, subfamily IIA, SERCA-type
IPR006068 : Cation-transporting P-type ATPase, C-terminal
IPR008250 : P-type ATPase, A domain
IPR018303 : P-type ATPase, phosphorylation site
IPR023214 : HAD-like domain
IPR023298 : P-type ATPase, transmembrane domain
IPR023299 : P-type ATPase, cytoplasmic domain N
GO :
0000166 : Molecular Function : nucleotide binding
0005388 : Molecular Function : calcium-transporting ATPase activity
0006812 : Biological Process : cation transport
0006816 : Biological Process : calcium ion transport
0016021 : Cellular Component : integral component of membrane
0019829 : Molecular Function : cation-transporting ATPase activity
0046872 : Molecular Function : metal ion binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 23, E.R. 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023254)
HIX0023254
HIT000677839 (
ENST00000564732
)
(Sarcoplasmic/endoplasmic reticulum calcium ATPase 1; SERCA1; SR Ca(2+)-ATPase 1; EC=3.6.3.8; Calcium pump 1; Calcium-transporting ATPase sarcoplasmic reticulum type, fast twitch skeletal muscle isoform; Endoplasmic reticulum class 1/2 Ca(2+) ATPase;)
genome : 28,898,984 - 28,911,939 (12,956)
query : 1 - 831 (831/831)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.6.3.8
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 26, plas 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023254)
HIX0023254
HIT000394918
(
EF139859
)
(Sarcoplasmic/endoplasmic reticulum calcium ATPase 1; SERCA1; SR Ca(2+)-ATPase 1; EC=3.6.3.8; Calcium pump 1; Calcium-transporting ATPase sarcoplasmic reticulum type, fast twitch skeletal muscle isoform; Endoplasmic reticulum class 1/2 Ca(2+) ATPase;)
genome : 28,900,218 - 28,905,540 (5,323)
query : 1 - 468 (468/468)
3 exons
identity = 0.994
5'(1.000;0.991;1.000)3'
coverage = 1.000
EC number :
EC 3.6.3.8
InterPro :
IPR018303 : P-type ATPase, phosphorylation site
IPR023299 : P-type ATPase, cytoplasmic domain N
GO :
0000166 : Molecular Function : nucleotide binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 28, nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023254)
HIX0023254
HIT000394919
(
EF139860
)
(Sarcoplasmic/endoplasmic reticulum calcium ATPase 1; SERCA1; SR Ca(2+)-ATPase 1; EC=3.6.3.8; Calcium pump 1; Calcium-transporting ATPase sarcoplasmic reticulum type, fast twitch skeletal muscle isoform; Endoplasmic reticulum class 1/2 Ca(2+) ATPase;)
genome : 28,900,218 - 28,905,540 (5,323)
query : 1 - 239 (239/239)
3 exons
identity = 0.996
5'(1.000;0.991;1.000)3'
coverage = 1.000
EC number :
EC 3.6.3.8
InterPro :
IPR018303 : P-type ATPase, phosphorylation site
IPR023299 : P-type ATPase, cytoplasmic domain N
GO :
0000166 : Molecular Function : nucleotide binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 28, nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023254)
HIX0023254
HIT000677590 (
ENST00000564470
)
(Sarcoplasmic/endoplasmic reticulum calcium ATPase 1; SERCA1; SR Ca(2+)-ATPase 1; EC=3.6.3.8; Calcium pump 1; Calcium-transporting ATPase sarcoplasmic reticulum type, fast twitch skeletal muscle isoform; Endoplasmic reticulum class 1/2 Ca(2+) ATPase;)
genome : 28,900,218 - 28,905,540 (5,323)
query : 1 - 467 (467/467)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.6.3.8
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 28, nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023254)
HIX0023254
HIT000678135 (
ENST00000565042
)
(Sarcoplasmic/endoplasmic reticulum calcium ATPase 1; SERCA1; SR Ca(2+)-ATPase 1; EC=3.6.3.8; Calcium pump 1; Calcium-transporting ATPase sarcoplasmic reticulum type, fast twitch skeletal muscle isoform; Endoplasmic reticulum class 1/2 Ca(2+) ATPase;)
genome : 28,900,218 - 28,905,540 (5,323)
query : 1 - 239 (239/239)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.6.3.8
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 28, nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023254)
HIX0023254
HIT000017558
(
AK092691
)
(Sarcoplasmic/endoplasmic reticulum calcium ATPase 1; SERCA1; SR Ca(2+)-ATPase 1; EC=3.6.3.8; Calcium pump 1; Calcium-transporting ATPase sarcoplasmic reticulum type, fast twitch skeletal muscle isoform; Endoplasmic reticulum class 1/2 Ca(2+) ATPase;)
genome : 28,912,157 - 28,915,785 (3,629)
query : 1 - 1,288 (1,288/1,288)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.6.3.8
InterPro :
IPR001757 : P-type ATPase
IPR006068 : Cation-transporting P-type ATPase, C-terminal
IPR023214 : HAD-like domain
IPR023298 : P-type ATPase, transmembrane domain
GO :
0006812 : Biological Process : cation transport
0016021 : Cellular Component : integral component of membrane
0019829 : Molecular Function : cation-transporting ATPase activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023254)
HIX0023254
HIT000677245 (
ENST00000564112
)
(Non-protein coding transcript.)
genome : 28,914,694 - 28,915,147 (454)
query : 1 - 195 (195/195)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023254)
HIX0023012
HIT000010209
(
AK026935
)
(Rab GTPase-binding effector protein 2; Rabaptin-5beta;)
genome : 28,915,742 - 28,936,532 (20,791)
query : 1 - 2,279 (2,279/2,309)
12 exons
identity = 0.996
3'(0.997;0.991;1.000;0.974;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003914 : Rabaptin
IPR015390 : Rabaptin, GTPase-Rab5 binding domain
IPR018514 : Rabaptin coiled-coil domain
GO :
0005096 : Molecular Function : GTPase activator activity
0008083 : Molecular Function : growth factor activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, cyto_nucl 17
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023012)
HIX0023012
HIT000098262
(
BC046118
)
Representative transcript
(Rab GTPase-binding effector protein 2; Rabaptin-5beta;)
genome : 28,915,742 - 28,936,526 (20,785)
query : 1 - 2,274 (2,274/2,301)
12 exons
identity = 0.998
3'(1.000;1.000;1.000;0.974;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003914 : Rabaptin
IPR015390 : Rabaptin, GTPase-Rab5 binding domain
IPR018514 : Rabaptin coiled-coil domain
GO :
0005096 : Molecular Function : GTPase activator activity
0008083 : Molecular Function : growth factor activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, cyto_nucl 17
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023012)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK089938
Bos
sp. (Cow) : BC114873
Danio
sp. (Zebrafish) : BC129228
Tetraodon
sp. (Tetraodon) : CR654217
Pongo
sp. (Orangutan) : CR858203
Monodelphis
sp. (Opossum) : ENSMODT00000019747
Rattus
sp. (Rat) : ENSRNOT00000025043
Takifugu
sp. (Fugu) : SINFRUT00000159499
Macaca
sp. (Macaque) : XM_001096389
Equus
sp. (Horse) : XM_001496683
Canis
sp. (Dog) : XM_547072
Pan
sp. (Chimpanzee) : XR_023082
HIX0023012
HIT000259910
(
BC058900
)
(Rab GTPase-binding effector protein 2; Rabaptin-5beta;)
genome : 28,915,742 - 28,936,535 (20,794)
query : 1 - 2,175 (2,175/2,190)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003914 : Rabaptin
IPR015390 : Rabaptin, GTPase-Rab5 binding domain
IPR018514 : Rabaptin coiled-coil domain
GO :
0005096 : Molecular Function : GTPase activator activity
0008083 : Molecular Function : growth factor activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, cyto_nucl 17
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023012)
HIX0023012
HIT000311940 (
ENST00000358201
)
(Rab GTPase-binding effector protein 2; Rabaptin-5beta;)
genome : 28,915,742 - 28,937,073 (21,332)
query : 1 - 2,821 (2,821/2,821)
12 exons
identity = 0.998
3'(1.000;1.000;1.000;0.974;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, cyto_nucl 17
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023012)
HIX0023012
HIT000311404 (
ENST00000357573
)
(Rab GTPase-binding effector protein 2; Rabaptin-5beta;)
genome : 28,915,742 - 28,936,535 (20,794)
query : 1 - 2,175 (2,175/2,175)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, cyto_nucl 17
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023012)
HIX0023012
HIT000209506 (
NM_024816
)
(Rab GTPase-binding effector protein 2; Rabaptin-5beta;)
genome : 28,915,742 - 28,936,532 (20,791)
query : 1 - 2,280 (2,280/2,280)
12 exons
identity = 0.998
3'(1.000;1.000;1.000;0.974;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, cyto_nucl 17
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023012)
HIX0023012
HIT000017166
(
AK092299
)
(Rab GTPase-binding effector protein 2; Rabaptin-5beta;)
genome : 28,915,743 - 28,937,073 (21,331)
query : 1 - 2,820 (2,820/2,820)
12 exons
identity = 0.998
3'(1.000;1.000;1.000;0.974;0.994;1.000;1.000;
1.000;1.000;1.000;1.000;0.998)5'
coverage = 1.000
InterPro :
IPR003914 : Rabaptin
IPR015390 : Rabaptin, GTPase-Rab5 binding domain
IPR018514 : Rabaptin coiled-coil domain
GO :
0005096 : Molecular Function : GTPase activator activity
0008083 : Molecular Function : growth factor activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, cyto_nucl 17
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023012)
HIX0023012
HIT000489853
(
AK295229
)
(Rab GTPase-binding effector protein 2.)
genome : 28,916,149 - 28,936,517 (20,369)
query : 1 - 1,645 (1,645/1,645)
11 exons
identity = 0.997
3'(1.000;1.000;1.000;0.974;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR015390 : Rabaptin, GTPase-Rab5 binding domain
IPR018514 : Rabaptin coiled-coil domain
GO :
0005096 : Molecular Function : GTPase activator activity
0008083 : Molecular Function : growth factor activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto_nucl 17, cyto 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023012)
HIX0023012
HIT000643522 (
ENST00000544477
)
(Rab GTPase-binding effector protein 2.)
genome : 28,916,149 - 28,936,517 (20,369)
query : 1 - 1,645 (1,645/1,645)
11 exons
identity = 0.997
3'(1.000;1.000;1.000;0.974;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto_nucl 17, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023012)
HIX0023012
HIT000091356
(
BC027584
)
(Rab GTPase-binding effector protein 2.)
genome : 28,921,623 - 28,937,005 (15,383)
query : 6 - 2,200 (2,195/2,215)
7 exons
identity = 0.994
3'(0.982;1.000;0.997;1.000;1.000;1.000;1.000)5'
coverage = 0.998
InterPro :
IPR003914 : Rabaptin
IPR018514 : Rabaptin coiled-coil domain
GO :
0005096 : Molecular Function : GTPase activator activity
0008083 : Molecular Function : growth factor activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26.5, cyto_nucl 17.5, cyto 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023012)
HIX0023012
HIT000675779 (
ENST00000562590
)
(Rab GTPase-binding effector protein 2.)
genome : 28,921,623 - 28,937,005 (15,383)
query : 1 - 2,196 (2,196/2,211)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26.5, cyto_nucl 17.5, cyto 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023012)
HIX0023012
HIT000681673 (
ENST00000568703
)
(Rab GTPase-binding effector protein 2.)
genome : 28,925,557 - 28,936,148 (10,592)
query : 1 - 1,045 (1,045/1,045)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23.5, cyto_nucl 16, cyto 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023012)
HIX0023012
HIT000680491 (
ENST00000567483
)
(Rab GTPase-binding effector protein 2.)
genome : 28,925,580 - 28,936,258 (10,679)
query : 1 - 841 (841/841)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23, cyto 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023012)
HIX0023012
HIT000674723 (
ENST00000561501
)
(Rab GTPase-binding effector protein 2.)
genome : 28,925,811 - 28,935,521 (9,711)
query : 1 - 538 (538/538)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 17, nucl 15, cyto 13
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023012)
HIX0023012
HIT000679791 (
ENST00000566762
)
(Rab GTPase-binding effector protein 2.)
genome : 28,925,993 - 28,947,847 (21,855)
query : 1 - 532 (532/545)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 0.976
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 19.5, mito_nucl 14.8333, nucl 8.5,
cyto_nucl 7.33333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023012)
HIX0023012
HIT000675018 (
ENST00000561803
)
(Rab GTPase-binding effector protein 2.)
genome : 28,927,497 - 28,936,535 (9,039)
query : 1 - 593 (593/593)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto_nucl 16.5, cyto 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023012)
HIX0023012
HIT000677593 (
ENST00000564473
)
(Rab GTPase-binding effector protein 2.)
genome : 28,929,144 - 28,936,498 (7,355)
query : 1 - 553 (553/553)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23.5, cyto_nucl 16.5, cyto 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023012)
HIX0023012
HIT000675674 (
ENST00000562475
)
(Rab GTPase-binding effector protein 2.)
genome : 28,929,158 - 28,936,032 (6,875)
query : 1 - 560 (560/560)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 14, nucl 10.5, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023012)
HIX0023012
HIT000048939
(
AK129668
)
(Rab GTPase-binding effector protein 2.)
genome : 28,929,412 - 28,931,419 (2,008)
query : 1 - 2,009 (2,009/2,009)
1 exon
identity = 0.997
3'(0.997)5'
coverage = 1.000
InterPro :
IPR018514 : Rabaptin coiled-coil domain
GO :
0005096 : Molecular Function : GTPase activator activity
0008083 : Molecular Function : growth factor activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, nucl 8, cyto 4, mito_nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023012)
HIX0023012
HIT000682948 (
ENST00000570030
)
(Rab GTPase-binding effector protein 2.)
genome : 28,931,009 - 28,936,537 (5,529)
query : 1 - 583 (583/583)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21.5, cyto_nucl 16.5, cyto 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023012)
HIX0023012
HIT000677695 (
ENST00000564579
)
(Rab GTPase-binding effector protein 2.)
genome : 28,931,016 - 28,936,031 (5,016)
query : 1 - 557 (557/557)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 15, nucl 11.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023012)
HIX0023012
HIT000676722 (
ENST00000563577
)
(Rab GTPase-binding effector protein 2.)
genome : 28,931,107 - 28,936,003 (4,897)
query : 1 - 589 (589/589)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14, cyto_nucl 14, cyto 12, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023012)
HIX0023012
HIT000250744
(
AY129017
)
(Conserved hypothetical protein.)
genome : 28,931,999 - 28,936,455 (4,457)
query : 2 - 1,145 (1,144/1,205)
2 exons
identity = 0.994
3'(0.998;0.932)5'
coverage = 0.965
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, cyto_nucl 2.83333, nucl 2.5, cyto 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023012)
HIX0223059
HIT000495987
(
AK301363
)
(B-lymphocyte antigen CD19; B-lymphocyte surface antigen B4; Differentiation antigen CD19; T-cell surface antigen Leu-12; AltName: CD_antigen=CD19; Precursor;)
genome : 28,943,286 - 28,944,620 (1,335)
query : 1 - 959 (959/959)
3 exons
identity = 0.999
5'(1.000;0.999;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0223059)
HIX0223059
HIT000426161
(
AK307295
)
Representative transcript
(B-lymphocyte antigen CD19; B-lymphocyte surface antigen B4; Differentiation antigen CD19; T-cell surface antigen Leu-12; AltName: CD_antigen=CD19; Precursor;)
genome : 28,943,308 - 28,944,764 (1,457)
query : 1 - 951 (951/951)
4 exons
identity = 0.999
5'(1.000;1.000;0.998;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, cyto_nucl 14.5, nucl 12, extr 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0223059)
HIX0223059
HIT000679916 (
ENST00000566890
)
(Conserved hypothetical protein.)
genome : 28,944,254 - 28,944,962 (709)
query : 1 - 590 (590/590)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14.5, cyto 13.5, nucl 12.5, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0223059)
HIX0223723
HIT000680380 (
ENST00000567368
)
(Conserved hypothetical protein.)
genome : 28,948,120 - 28,950,539 (2,420)
query : 1 - 847 (847/847)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14.5, cyto 11, extr 9, nucl 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0223723)
HIX0018982
HIT000262882
(
BC068007
)
(NFATC2-interacting protein.)
genome : 28,962,128 - 28,977,012 (14,885)
query : 1 - 2,343 (2,343/2,357)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000626 : Ubiquitin-like
IPR022617 : Rad60/SUMO-like domain
IPR029071 : Ubiquitin-related domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, cyto_nucl 9, nucl 6.5, cyto 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018982)
HIX0018982
HIT000678076 (
ENST00000564978
)
(NFATC2-interacting protein.)
genome : 28,962,128 - 28,977,019 (14,892)
query : 1 - 2,350 (2,350/2,350)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, cyto_nucl 9, nucl 6.5, cyto 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018982)
HIX0018982
HIT000122565 (
ENST00000320805
)
(NFATC2-interacting protein; 45 kDa NF-AT-interacting protein; 45 kDa NFAT-interacting protein; Nuclear factor of activated T-cells, cytoplasmic 2-interacting protein;)
genome : 28,962,258 - 28,978,418 (16,161)
query : 1 - 4,569 (4,569/4,569)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29.5, cyto_nucl 16
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018982)
HIX0018982
HIT000337092
(
BC101741
)
(NFATC2-interacting protein; 45 kDa NF-AT-interacting protein; 45 kDa NFAT-interacting protein; Nuclear factor of activated T-cells, cytoplasmic 2-interacting protein;)
genome : 28,962,258 - 28,975,215 (12,958)
query : 1 - 1,366 (1,366/1,366)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
InterPro :
IPR000626 : Ubiquitin-like
IPR022617 : Rad60/SUMO-like domain
IPR029071 : Ubiquitin-related domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29.5, cyto_nucl 16
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018982)
HIX0018982
HIT000340311
(
BC112182
)
(NFATC2-interacting protein; 45 kDa NF-AT-interacting protein; 45 kDa NFAT-interacting protein; Nuclear factor of activated T-cells, cytoplasmic 2-interacting protein;)
genome : 28,962,258 - 28,975,215 (12,958)
query : 1 - 1,366 (1,366/1,366)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
InterPro :
IPR000626 : Ubiquitin-like
IPR022617 : Rad60/SUMO-like domain
IPR029071 : Ubiquitin-related domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29.5, cyto_nucl 16
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018982)
HIX0018982
HIT000079986
(
AF458593
)
(NFATC2-interacting protein; 45 kDa NF-AT-interacting protein; 45 kDa NFAT-interacting protein; Nuclear factor of activated T-cells, cytoplasmic 2-interacting protein;)
genome : 28,962,315 - 28,976,749 (14,435)
query : 8 - 2,850 (2,843/2,865)
8 exons
identity = 0.999
5'(0.993;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 0.998
InterPro :
IPR000626 : Ubiquitin-like
IPR022617 : Rad60/SUMO-like domain
IPR029071 : Ubiquitin-related domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29.5, cyto_nucl 16
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018982)
HIX0018982
HIT000678974 (
ENST00000565919
)
(NFATC2-interacting protein.)
genome : 28,962,309 - 28,963,964 (1,656)
query : 1 - 576 (576/576)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 17.5, nucl 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018982)
HIX0018982
HIT000210908 (
NM_032815
)
(NFATC2-interacting protein; 45 kDa NF-AT-interacting protein; 45 kDa NFAT-interacting protein; Nuclear factor of activated T-cells, cytoplasmic 2-interacting protein;)
genome : 28,962,318 - 28,977,766 (15,449)
query : 1 - 3,857 (3,857/3,877)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29.5, cyto_nucl 16
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018982)
HIX0018982
HIT000081796
(
AK074761
)
Representative transcript
(NFATC2-interacting protein; 45 kDa NF-AT-interacting protein; 45 kDa NFAT-interacting protein; Nuclear factor of activated T-cells, cytoplasmic 2-interacting protein;)
genome : 28,962,328 - 28,976,748 (14,421)
query : 1 - 2,829 (2,829/2,829)
8 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.998)3'
coverage = 1.000
InterPro :
IPR000626 : Ubiquitin-like
IPR022617 : Rad60/SUMO-like domain
IPR029071 : Ubiquitin-related domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29.5, cyto_nucl 16
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018982)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB050511
Mus
sp. (Mouse) : AK030107
Rattus
sp. (Rat) : BC079050
Danio
sp. (Zebrafish) : BC090421
Bos
sp. (Cow) : BC142075
Pongo
sp. (Orangutan) : ENSPPYT00000008502
Pan
sp. (Chimpanzee) : XM_001146533
Monodelphis
sp. (Opossum) : XM_001369250
Equus
sp. (Horse) : XM_001915874
Canis
sp. (Dog) : XM_844795
HIX0018982
HIT000676149 (
ENST00000562977
)
(NFATC2-interacting protein.)
genome : 28,962,328 - 28,970,339 (8,012)
query : 1 - 638 (638/638)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018982)
HIX0018982
HIT000498796
(
AK304172
)
(NFATC2-interacting protein.)
genome : 28,962,328 - 28,963,883 (1,556)
query : 1 - 823 (823/823)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018982)
HIX0018982
HIT000678813 (
ENST00000565752
)
(NFATC2-interacting protein.)
genome : 28,962,328 - 28,963,883 (1,556)
query : 1 - 823 (823/823)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018982)
HIX0018982
HIT000265892
(
BC080628
)
(NFATC2-interacting protein.)
genome : 28,962,651 - 28,977,012 (14,362)
query : 1 - 2,770 (2,770/2,787)
8 exons
identity = 0.997
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.996)3'
coverage = 1.000
InterPro :
IPR000626 : Ubiquitin-like
IPR022617 : Rad60/SUMO-like domain
IPR029071 : Ubiquitin-related domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito_nucl 15.3333, nucl 14.5, mito 14,
cyto_nucl 9.16667
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018982)
HIX0018982
HIT000038329
(
BC018311
)
(NFATC2-interacting protein.)
genome : 28,965,907 - 28,976,749 (10,843)
query : 1 - 2,344 (2,344/2,359)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000626 : Ubiquitin-like
IPR022617 : Rad60/SUMO-like domain
IPR029071 : Ubiquitin-related domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 14, cyto 10.5, extr 2, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018982)
HIX0018982
HIT000681952 (
ENST00000568998
)
(NFATC2-interacting protein.)
genome : 28,965,927 - 28,968,033 (2,107)
query : 1 - 720 (720/720)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27, extr 2, cyto 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018982)
HIX0018982
HIT000010817
(
AK027545
)
(NFATC2-interacting protein.)
genome : 28,967,291 - 28,977,011 (9,721)
query : 1 - 2,517 (2,517/2,517)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR000626 : Ubiquitin-like
IPR022617 : Rad60/SUMO-like domain
IPR029071 : Ubiquitin-related domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, cyto_nucl 15.5, cyto 11
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018982)
HIX0018982
HIT000039208
(
BC021551
)
(NFATC2-interacting protein.)
genome : 28,967,323 - 28,975,991 (8,669)
query : 1 - 1,465 (1,465/1,495)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000626 : Ubiquitin-like
IPR022617 : Rad60/SUMO-like domain
IPR029071 : Ubiquitin-related domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, mito 7, cyto 4, mito_pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018982)
HIX0223864
HIT000682895 (
ENST00000569974
)
(Conserved hypothetical protein.)
genome : 28,968,008 - 28,978,204 (10,197)
query : 1 - 544 (544/544)
2 exons
identity = 0.993
3'(1.000;0.992)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0223864)
HIX0223762
HIT000681047 (
ENST00000568057
)
(Conserved hypothetical protein.)
genome : 28,968,059 - 28,969,158 (1,100)
query : 1 - 573 (573/573)
2 exons
identity = 0.995
5'(1.000;0.987)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 17.5, cyto_mito 11, extr 5, cyto 3.5, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0223762)
HIX0018982
HIT000681133 (
ENST00000568148
)
(NFATC2-interacting protein.)
genome : 28,969,711 - 28,975,600 (5,890)
query : 1 - 1,157 (1,157/1,157)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11.5, extr 10, cyto_nucl 9.5, cyto 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018982)
HIX0018982
HIT000500148
(
AK316535
)
(NFATC2-interacting protein.)
genome : 28,969,771 - 28,975,444 (5,674)
query : 1 - 941 (941/941)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000626 : Ubiquitin-like
IPR022617 : Rad60/SUMO-like domain
IPR029071 : Ubiquitin-related domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11.5, extr 10, cyto_nucl 9.5, cyto 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018982)
HIX0018982
HIT000491957
(
AK297333
)
(NFATC2-interacting protein.)
genome : 28,969,832 - 28,975,600 (5,769)
query : 1 - 1,036 (1,036/1,036)
3 exons
identity = 0.999
5'(1.000;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR000626 : Ubiquitin-like
IPR022617 : Rad60/SUMO-like domain
IPR029071 : Ubiquitin-related domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11.5, extr 10, cyto_nucl 9.5, cyto 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018982)
HIX0018982
HIT000690793 (
ENST00000578855
)
(Non-protein coding transcript.)
genome : 28,969,904 - 28,969,982 (79)
query : 1 - 79 (79/79)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018982)
HIX0018982
HIT000725805 (
NR_039742
)
(Non-protein coding transcript.)
genome : 28,969,904 - 28,969,982 (79)
query : 1 - 79 (79/79)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018982)
HIX0018982
HIT000499230
(
AK304606
)
(NFATC2-interacting protein.)
genome : 28,969,910 - 28,975,565 (5,656)
query : 1 - 923 (923/923)
3 exons
identity = 0.996
5'(0.996;1.000;0.994)3'
coverage = 1.000
InterPro :
IPR000626 : Ubiquitin-like
IPR022617 : Rad60/SUMO-like domain
IPR029071 : Ubiquitin-related domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, nucl 11, cyto_nucl 10, cyto 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018982)
HIX0018982
HIT000019619
(
AK094764
)
(NFATC2-interacting protein.)
genome : 28,974,010 - 28,976,748 (2,739)
query : 1 - 2,739 (2,739/2,739)
1 exon
identity = 0.997
5'(0.997)3'
coverage = 1.000
InterPro :
IPR022617 : Rad60/SUMO-like domain
IPR029071 : Ubiquitin-related domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12.5, extr 11, cyto_nucl 11, cyto 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018982)
HIX0018982
HIT000456735
(
DQ590204
)
(Non-protein coding transcript.)
genome : 28,975,359 - 28,975,388 (30)
query : 1 - 30 (30/31)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 0.968
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018982)
HIX0018982
HIT000087449
(
BC010161
)
(Conserved hypothetical protein.)
genome : 28,976,930 - 28,977,766 (837)
query : 1 - 840 (840/860)
1 exon
identity = 0.995
5'(0.995)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto 10, cyto_nucl 7.5, nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018982)
HIX0013329
HIT000680771 (
ENST00000567771
)
(Protein spinster homolog 1 isoform 3.)
genome : 28,985,542 - 28,990,565 (5,024)
query : 1 - 829 (829/829)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto_nucl 16.5, nucl 13, cyto 12, cysk 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013329)
HIX0013329
HIT000681367 (
ENST00000568388
)
(Protein spinster homolog 1 isoform 2.)
genome : 28,985,642 - 28,990,776 (5,135)
query : 1 - 759 (759/759)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cysk 14, cyto_nucl 8, nucl 7, cysk_plas 7, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013329)
HIX0013329
HIT000052096
(
BC038961
)
Representative transcript
(Protein spinster homolog 1; HSpin1; Spinster-like protein 1;)
genome : 28,986,080 - 28,995,864 (9,785)
query : 1 - 1,985 (1,985/2,017)
13 exons
identity = 0.997
5'(0.952;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.997)3'
coverage = 1.000
InterPro :
IPR011701 : Major facilitator superfamily
IPR020846 : Major facilitator superfamily domain
GO :
0016021 : Cellular Component : integral component of membrane
0055085 : Biological Process : transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013329)
Ortholog candidate ( ->
Evola
)
Danio
sp. (Zebrafish) : AF465772
Mus
sp. (Mouse) : AK008721
Rattus
sp. (Rat) : BC087072
Bos
sp. (Cow) : BC123522
Macaca
sp. (Macaque) : ENSMMUT00000039419
Oryzias
sp. (Medaka) : ENSORLT00000014477
Pongo
sp. (Orangutan) : ENSPPYT00000008501
Takifugu
sp. (Fugu) : SINFRUT00000128970
Monodelphis
sp. (Opossum) : XM_001369281
Equus
sp. (Horse) : XM_001915877
Gallus
sp. (Chicken) : XM_415741
Canis
sp. (Dog) : XM_844908
HIX0013329
HIT000679029 (
ENST00000565975
)
(Protein spinster homolog 1; HSpin1; Spinster-like protein 1;)
genome : 28,986,093 - 28,995,869 (9,777)
query : 1 - 1,979 (1,979/1,979)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013329)
HIX0013329
HIT000317629 (
NM_032038
)
(Protein spinster homolog 1; HSpin1; Spinster-like protein 1;)
genome : 28,986,096 - 28,995,869 (9,774)
query : 1 - 2,213 (2,213/2,230)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013329)
HIX0013329
HIT000560591 (
NM_001142448
)
(Protein spinster homolog 1; HSpin1; Spinster-like protein 1;)
genome : 28,986,096 - 28,995,869 (9,774)
query : 1 - 1,976 (1,976/1,993)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013329)
HIX0013329
HIT000560592 (
NM_001142449
)
(Protein spinster homolog 1; HSpin1; Spinster-like protein 1;)
genome : 28,986,096 - 28,995,869 (9,774)
query : 1 - 1,991 (1,991/2,008)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013329)
HIX0013329
HIT000560593 (
NM_001142450
)
(Protein spinster homolog 1 isoform 2.)
genome : 28,986,096 - 28,995,869 (9,774)
query : 1 - 2,126 (2,126/2,143)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013329)
HIX0013329
HIT000560594 (
NM_001142451
)
(Protein spinster homolog 1; HSpin1; Spinster-like protein 1;)
genome : 28,986,096 - 28,995,869 (9,774)
query : 1 - 2,057 (2,057/2,074)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013329)
HIX0013329
HIT000118903 (
ENST00000311008
)
(Protein spinster homolog 1; HSpin1; Spinster-like protein 1;)
genome : 28,986,096 - 28,995,864 (9,769)
query : 1 - 2,208 (2,208/2,208)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013329)
HIX0013329
HIT000020532
(
AK095677
)
(Protein spinster homolog 1 isoform 4.)
genome : 28,986,099 - 28,992,008 (5,910)
query : 1 - 2,253 (2,253/2,253)
5 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR011701 : Major facilitator superfamily
IPR020846 : Major facilitator superfamily domain
GO :
0016021 : Cellular Component : integral component of membrane
0055085 : Biological Process : transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto_nucl 18.5, nucl 14.5, cyto 11.5, cysk 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013329)
HIX0013329
HIT000681859 (
ENST00000568900
)
(Protein spinster homolog 1 isoform 4.)
genome : 28,986,099 - 28,992,008 (5,910)
query : 1 - 2,253 (2,253/2,253)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto_nucl 18.5, nucl 14.5, cyto 11.5, cysk 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013329)
HIX0013329
HIT000422584
(
AK289787
)
(Protein spinster homolog 1 isoform 4.)
genome : 28,986,101 - 28,991,229 (5,129)
query : 1 - 1,472 (1,472/1,472)
5 exons
identity = 0.998
5'(1.000;1.000;1.000;0.993;0.996)3'
coverage = 1.000
InterPro :
IPR011701 : Major facilitator superfamily
IPR020846 : Major facilitator superfamily domain
GO :
0016021 : Cellular Component : integral component of membrane
0055085 : Biological Process : transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto_nucl 18.5, nucl 14.5, cyto 11.5, cysk 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013329)
HIX0013329
HIT000261798
(
BC065235
)
(Protein spinster homolog 1; HSpin1; Spinster-like protein 1;)
genome : 28,986,114 - 28,995,869 (9,756)
query : 1 - 1,958 (1,958/2,049)
13 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.993;
1.000;1.000;1.000;1.000;1.000;0.997)3'
coverage = 1.000
InterPro :
IPR011701 : Major facilitator superfamily
IPR020846 : Major facilitator superfamily domain
GO :
0016021 : Cellular Component : integral component of membrane
0055085 : Biological Process : transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013329)
HIX0013329
HIT000242979
(
AF370423
)
(Protein spinster homolog 1 isoform 2.)
genome : 28,986,115 - 28,995,864 (9,750)
query : 1 - 2,102 (2,102/2,144)
13 exons
identity = 0.997
5'(0.997;1.000;0.985;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.988)3'
coverage = 1.000
InterPro :
IPR011701 : Major facilitator superfamily
IPR020846 : Major facilitator superfamily domain
GO :
0016021 : Cellular Component : integral component of membrane
0055085 : Biological Process : transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013329)
HIX0013329
HIT000123374 (
ENST00000323081
)
(Protein spinster homolog 1 isoform 2.)
genome : 28,986,115 - 28,995,864 (9,750)
query : 1 - 2,102 (2,102/2,102)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013329)
HIX0013329
HIT000053232
(
BC047741
)
(Protein spinster homolog 1; HSpin1; Spinster-like protein 1;)
genome : 28,986,122 - 28,995,865 (9,744)
query : 1 - 2,027 (2,027/2,053)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR011701 : Major facilitator superfamily
IPR020846 : Major facilitator superfamily domain
GO :
0016021 : Cellular Component : integral component of membrane
0055085 : Biological Process : transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013329)
HIX0013329
HIT000129017 (
ENST00000334536
)
(Protein spinster homolog 1; HSpin1; Spinster-like protein 1;)
genome : 28,986,122 - 28,995,865 (9,744)
query : 1 - 2,027 (2,027/2,027)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013329)
HIX0013329
HIT000026430
(
AL390215
)
(Protein spinster homolog 1; HSpin1; Spinster-like protein 1;)
genome : 28,986,134 - 28,995,864 (9,731)
query : 1 - 1,948 (1,948/1,957)
10 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.997)3'
coverage = 1.000
InterPro :
IPR011701 : Major facilitator superfamily
IPR020846 : Major facilitator superfamily domain
GO :
0016021 : Cellular Component : integral component of membrane
0055085 : Biological Process : transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013329)
HIX0013329
HIT000308213 (
ENST00000352260
)
(Protein spinster homolog 1; HSpin1; Spinster-like protein 1;)
genome : 28,986,134 - 28,995,864 (9,731)
query : 1 - 1,948 (1,948/1,948)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013329)
HIX0013329
HIT000074063
(
AF212371
)
(Protein spinster homolog 1; HSpin1; Spinster-like protein 1;)
genome : 28,986,149 - 28,995,864 (9,716)
query : 1 - 2,154 (2,154/2,165)
12 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.994)3'
coverage = 1.000
InterPro :
IPR011701 : Major facilitator superfamily
IPR020846 : Major facilitator superfamily domain
GO :
0016021 : Cellular Component : integral component of membrane
0055085 : Biological Process : transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013329)
HIX0013329
HIT000033725
(
BC008325
)
(Protein spinster homolog 1; HSpin1; Spinster-like protein 1;)
genome : 28,986,271 - 28,995,864 (9,594)
query : 1 - 2,033 (2,033/2,050)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.997)3'
coverage = 1.000
InterPro :
IPR011701 : Major facilitator superfamily
IPR020846 : Major facilitator superfamily domain
GO :
0016021 : Cellular Component : integral component of membrane
0055085 : Biological Process : transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013329)
HIX0223714
HIT000680227 (
ENST00000567209
)
(Conserved hypothetical protein.)
genome : 28,986,294 - 28,990,145 (3,852)
query : 1 - 467 (467/467)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0223714)
HIX0013329
HIT000086603
(
BC006156
)
(Protein spinster homolog 1 isoform 2.)
genome : 28,986,485 - 28,995,864 (9,380)
query : 1 - 1,819 (1,819/1,836)
12 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.997)3'
coverage = 1.000
InterPro :
IPR011701 : Major facilitator superfamily
IPR020846 : Major facilitator superfamily domain
GO :
0016021 : Cellular Component : integral component of membrane
0055085 : Biological Process : transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013329)
HIX0013329
HIT000679109 (
ENST00000566059
)
(Protein spinster homolog 1 isoform 3.)
genome : 28,986,506 - 28,995,838 (9,333)
query : 1 - 1,615 (1,615/1,615)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013329)
HIX0013329
HIT000677596 (
ENST00000564476
)
(Protein spinster homolog 1 isoform 2.)
genome : 28,986,519 - 28,995,379 (8,861)
query : 1 - 890 (890/890)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 11, pero 5, plas 4, extr 4, nucl 4, extr_plas 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013329)
HIX0013329
HIT000675083 (
ENST00000561868
)
(Protein spinster homolog 1 isoform 4.)
genome : 28,986,823 - 28,992,936 (6,114)
query : 1 - 421 (421/441)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 0.955
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 17, extr 9, cyto_mito 9, mito_nucl 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013329)
HIX0013329
HIT000681792 (
ENST00000568829
)
(Protein spinster homolog 1 isoform 4.)
genome : 28,989,259 - 28,995,861 (6,603)
query : 1 - 780 (780/780)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 23, E.R._mito 2.5, extr 2, E.R. 2, pero 2,
lyso 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013329)
HIX0222948
HIT000035292
(
BC011563
)
Representative transcript
(Linker for activation of T-cells family member 1 isoform d.)
genome : 28,996,147 - 29,002,104 (5,958)
query : 1 - 1,448 (1,448/1,472)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.999
InterPro :
IPR008359 : Linker-for-activation of T cells (LAT) protein
GO :
0007165 : Biological Process : signal transduction
0016020 : Cellular Component : membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13.5, extr_plas 9.5, plas 4.5, cyto 4, mito 4,
pero 4, cyto_mito 4, mito_pero 4, cyto_pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222948)
HIX0222948
HIT000365424 (
NM_001014989
)
(Linker-for-activation of T cells (LAT) protein family protein.)
genome : 28,996,147 - 29,002,104 (5,958)
query : 1 - 1,448 (1,448/1,472)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13.5, extr_plas 9.5, plas 4.5, cyto 4, mito 4,
pero 4, cyto_mito 4, mito_pero 4, cyto_pero 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222948)
HIX0222948
HIT000478833 (
ENST00000395461
)
(Linker-for-activation of T cells (LAT) protein family protein.)
genome : 28,996,147 - 29,002,104 (5,958)
query : 1 - 1,448 (1,448/1,448)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13.5, extr_plas 9.5, plas 4.5, cyto 4, mito 4,
pero 4, cyto_mito 4, mito_pero 4, cyto_pero 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222948)
HIX0222948
HIT000426208
(
AK307342
)
(Linker for activation of T-cells family member 1 isoform c.)
genome : 28,996,370 - 28,997,623 (1,254)
query : 1 - 946 (946/946)
3 exons
identity = 0.999
5'(1.000;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR008359 : Linker-for-activation of T cells (LAT) protein
GO :
0007165 : Biological Process : signal transduction
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 7, cyto 7, cyto_nucl 7, plas 6.5, pero 5,
extr_plas 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222948)
HIX0222948
HIT000679311 (
ENST00000566270
)
(Linker-for-activation of T cells (LAT) protein family protein.)
genome : 28,996,370 - 28,997,623 (1,254)
query : 1 - 946 (946/946)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 7, cyto 7, cyto_nucl 7, plas 6.5, pero 5,
extr_plas 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222948)
HIX0222948
HIT000677405 (
ENST00000564277
)
(Linker-for-activation of T cells (LAT) protein family protein.)
genome : 28,996,375 - 29,001,340 (4,966)
query : 1 - 921 (921/921)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222948)
HIX0222948
HIT000675671 (
ENST00000562472
)
(Linker-for-activation of T cells (LAT) protein family protein.)
genome : 28,996,385 - 28,997,553 (1,169)
query : 1 - 615 (615/615)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222948)
HIX0222948
HIT000204765 (
NM_014387
)
(Linker-for-activation of T cells (LAT) protein family protein.)
genome : 28,996,387 - 29,002,104 (5,718)
query : 1 - 1,743 (1,743/1,767)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 0.999
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 30
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222948)
HIX0222948
HIT000365422 (
NM_001014987
)
(Linker-for-activation of T cells (LAT) protein family protein.)
genome : 28,996,387 - 29,002,104 (5,718)
query : 1 - 1,656 (1,656/1,680)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.999
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 30
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222948)
HIX0222948
HIT000365423 (
NM_001014988
)
(Linker-for-activation of T cells (LAT) protein family protein.)
genome : 28,996,387 - 29,002,104 (5,718)
query : 1 - 1,653 (1,653/1,677)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.999
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 30
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222948)
HIX0222948
HIT000677102 (
ENST00000563964
)
(Linker-for-activation of T cells (LAT) protein family protein.)
genome : 28,996,387 - 28,998,164 (1,778)
query : 1 - 710 (710/710)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 8, plas 7, pero 5, cyto_mito 5, nucl 4, E.R. 4,
extr_plas 4, cyto_golg 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222948)
HIX0222948
HIT000244830
(
AJ223280
)
(Linker for activation of T-cells family member 1 isoform b.)
genome : 28,996,417 - 29,002,094 (5,678)
query : 1 - 1,616 (1,616/1,616)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR008359 : Linker-for-activation of T cells (LAT) protein
GO :
0007165 : Biological Process : signal transduction
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222948)
HIX0222948
HIT000478828 (
ENST00000395456
)
(Linker-for-activation of T cells (LAT) protein family protein.)
genome : 28,996,417 - 29,002,094 (5,678)
query : 1 - 1,616 (1,616/1,616)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222948)
HIX0222948
HIT000552303 (
ENST00000454369
)
(Linker-for-activation of T cells (LAT) protein family protein.)
genome : 28,996,444 - 29,001,770 (5,327)
query : 1 - 1,262 (1,262/1,262)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222948)
HIX0222948
HIT000063348
(
AF036906
)
(Linker for activation of T-cells family member 1; 36 kDa phospho-tyrosine adapter protein; pp36; p36-38;)
genome : 28,996,661 - 29,002,094 (5,434)
query : 1 - 1,459 (1,459/1,460)
11 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;0.994;1.000;
1.000;1.000;1.000;0.997)3'
coverage = 0.999
InterPro :
IPR008359 : Linker-for-activation of T cells (LAT) protein
GO :
0007165 : Biological Process : signal transduction
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222948)
HIX0222948
HIT000314183 (
ENST00000360872
)
(Linker-for-activation of T cells (LAT) protein family protein.)
genome : 28,996,661 - 29,002,094 (5,434)
query : 1 - 1,459 (1,459/1,459)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222948)
HIX0222948
HIT000063347
(
AF036905
)
(Linker for activation of T-cells family member 1 isoform b.)
genome : 28,996,682 - 29,001,772 (5,091)
query : 1 - 1,029 (1,029/1,060)
12 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.983;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.998
InterPro :
IPR008359 : Linker-for-activation of T cells (LAT) protein
GO :
0007165 : Biological Process : signal transduction
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222948)
HIX0222948
HIT000308747 (
ENST00000354453
)
(Linker-for-activation of T cells (LAT) protein family protein.)
genome : 28,996,739 - 29,001,333 (4,595)
query : 1 - 759 (759/759)
9 exons
identity = 0.976
5'(1.000;1.000;1.000;0.977;0.923;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222948)
HIX0222948
HIT000646876
(
FN432831
)
(Linker-for-activation of T cells (LAT) protein family protein.)
genome : 28,996,739 - 29,001,333 (4,595)
query : 1 - 816 (816/816)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR008359 : Linker-for-activation of T cells (LAT) protein
GO :
0007165 : Biological Process : signal transduction
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222948)
HIX0222948
HIT000646877
(
FN432832
)
(Linker-for-activation of T cells (LAT) protein family protein.)
genome : 28,996,739 - 29,001,333 (4,595)
query : 1 - 786 (786/786)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR008359 : Linker-for-activation of T cells (LAT) protein
GO :
0007165 : Biological Process : signal transduction
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222948)
HIX0222948
HIT000646878
(
FN432833
)
(Linker-for-activation of T cells (LAT) protein family protein.)
genome : 28,996,739 - 29,001,333 (4,595)
query : 1 - 759 (759/759)
9 exons
identity = 0.976
5'(1.000;1.000;1.000;0.977;0.923;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR008359 : Linker-for-activation of T cells (LAT) protein
GO :
0007165 : Biological Process : signal transduction
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222948)
HIX0222948
HIT000646879
(
FN432834
)
(Linker-for-activation of T cells (LAT) protein family protein.)
genome : 28,996,739 - 29,001,333 (4,595)
query : 1 - 673 (673/673)
10 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;0.983;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR008359 : Linker-for-activation of T cells (LAT) protein
GO :
0007165 : Biological Process : signal transduction
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222948)
HIX0222948
HIT000675882 (
ENST00000562701
)
(Linker-for-activation of T cells (LAT) protein family protein.)
genome : 28,996,739 - 29,001,333 (4,595)
query : 1 - 816 (816/816)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222948)
HIX0222948
HIT000679224 (
ENST00000566177
)
(Linker-for-activation of T cells (LAT) protein family protein.)
genome : 28,996,739 - 29,001,333 (4,595)
query : 1 - 786 (786/786)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222948)
HIX0222948
HIT000681858 (
ENST00000568899
)
(Linker-for-activation of T cells (LAT) protein family protein.)
genome : 28,997,163 - 29,001,617 (4,455)
query : 1 - 701 (701/701)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 16, cyto 7.5, cyto_nucl 7.5, nucl 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222948)
HIX0222948
HIT000681419 (
ENST00000568440
)
(Non-protein coding transcript.)
genome : 28,997,420 - 28,998,018 (599)
query : 1 - 419 (419/419)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222948)
HIX0222948
HIT000683141 (
ENST00000570232
)
(Linker-for-activation of T cells (LAT) protein family protein.)
genome : 28,997,703 - 29,001,834 (4,132)
query : 6 - 707 (702/707)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.993
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, extr 5, cyto 3, mito 3, cyto_mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222948)
HIX0222948
HIT000018682
(
AK093815
)
(Linker for activation of T-cells family member 1 isoform b.)
genome : 28,998,887 - 29,001,775 (2,889)
query : 1 - 2,443 (2,443/2,443)
4 exons
identity = 0.998
5'(0.997;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222948)
HIX0222948
HIT000677568 (
ENST00000564447
)
(Conserved hypothetical protein.)
genome : 28,998,887 - 29,001,775 (2,889)
query : 1 - 2,443 (2,443/2,443)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18, cyto_nucl 9, E.R._mito 9, cyto 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0222948)
HIX0223389
HIT000674694 (
ENST00000561471
)
(Hypothetical protein.)
genome : 29,000,461 - 29,002,099 (1,639)
query : 1 - 454 (454/454)
2 exons
identity = 0.991
3'(1.000;0.990)5'
coverage = 1.000