bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0202410
HIT000307832 (
ENST00000349699
)
(Probable ATP-dependent RNA helicase DDX52; EC=3.6.4.13; ATP-dependent RNA helicase ROK1-like; DEAD box protein 52;)
genome : 35,969,826 - 36,003,493 (33,668)
query : 1 - 6,359 (6,359/6,359)
15 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.6.4.13
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto_nucl 15, cyto 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202410)
HIX0202410
HIT000203552 (
NM_007010
)
(Probable ATP-dependent RNA helicase DDX52; EC=3.6.4.13; ATP-dependent RNA helicase ROK1-like; DEAD box protein 52;)
genome : 35,972,363 - 36,003,493 (31,131)
query : 1 - 3,822 (3,822/3,822)
15 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.6.4.13
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto_nucl 15, cyto 9
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202410)
HIX0202410
HIT000477780 (
ENST00000394367
)
(Probable ATP-dependent RNA helicase DDX52; EC=3.6.4.13; ATP-dependent RNA helicase ROK1-like; DEAD box protein 52;)
genome : 35,972,413 - 36,003,487 (31,075)
query : 1 - 3,881 (3,881/3,881)
16 exons
identity = 0.999
3'(1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.6.4.13
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20.5, cyto_nucl 16.3333, cyto_pero 12.5, nucl 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202410)
HIX0202410
HIT000052606
(
BC041785
)
(Probable ATP-dependent RNA helicase DDX52; EC=3.6.4.13; ATP-dependent RNA helicase ROK1-like; DEAD box protein 52;)
genome : 35,973,157 - 36,003,475 (30,319)
query : 1 - 3,010 (3,010/3,097)
15 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.6.4.13
InterPro :
IPR001650 : Helicase, C-terminal
IPR011545 : DEAD/DEAH box helicase domain
IPR014001 : Helicase superfamily 1/2, ATP-binding domain
IPR014014 : RNA helicase, DEAD-box type, Q motif
GO :
0003676 : Molecular Function : nucleic acid binding
0004386 : Molecular Function : helicase activity
0005524 : Molecular Function : ATP binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto_nucl 15, cyto 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202410)
HIX0202410
HIT000004126
(
AK001652
)
Representative transcript
(Probable ATP-dependent RNA helicase DDX52; EC=3.6.4.13; ATP-dependent RNA helicase ROK1-like; DEAD box protein 52;)
genome : 35,973,158 - 36,003,474 (30,317)
query : 1 - 3,123 (3,123/3,123)
16 exons
identity = 0.996
3'(1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.6.4.13
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20.5, cyto_nucl 16.3333, cyto_pero 12.5, nucl 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202410)
HIX0202410
HIT000592053 (
ENST00000488402
)
(Probable ATP-dependent RNA helicase DDX52; EC=3.6.4.13; ATP-dependent RNA helicase ROK1-like; DEAD box protein 52;)
genome : 35,973,158 - 36,003,474 (30,317)
query : 1 - 3,123 (3,123/3,123)
16 exons
identity = 0.999
3'(1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.6.4.13
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20.5, cyto_nucl 16.3333, cyto_pero 12.5, nucl 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202410)
HIX0202410
HIT000066206
(
AF077033
)
(Probable ATP-dependent RNA helicase DDX52; EC=3.6.4.13; ATP-dependent RNA helicase ROK1-like; DEAD box protein 52;)
genome : 35,973,439 - 36,003,463 (30,025)
query : 1 - 2,714 (2,714/2,714)
15 exons
identity = 0.997
3'(1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.6.4.13
InterPro :
IPR001650 : Helicase, C-terminal
IPR011545 : DEAD/DEAH box helicase domain
IPR014001 : Helicase superfamily 1/2, ATP-binding domain
IPR014014 : RNA helicase, DEAD-box type, Q motif
GO :
0003676 : Molecular Function : nucleic acid binding
0004386 : Molecular Function : helicase activity
0005524 : Molecular Function : ATP binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto_nucl 15.5, cyto 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202410)
Ortholog candidate ( ->
Evola
)
Gallus
sp. (Chicken) : AJ851514
Mus
sp. (Mouse) : AK141200
Rattus
sp. (Rat) : BC089107
Bos
sp. (Cow) : BC140501
Equus
sp. (Horse) : ENSECAT00000013254
Oryzias
sp. (Medaka) : ENSORLT00000006612
Pongo
sp. (Orangutan) : ENSPPYT00000009613
Tetraodon
sp. (Tetraodon) : GSTENT00018980001
Takifugu
sp. (Fugu) : SINFRUT00000128018
Pan
sp. (Chimpanzee) : XM_001173155
Monodelphis
sp. (Opossum) : XM_001371595
Canis
sp. (Dog) : XM_847865
HIX0202410
HIT000328873
(
AB208938
)
(Probable ATP-dependent RNA helicase DDX52; EC=3.6.4.13; ATP-dependent RNA helicase ROK1-like; DEAD box protein 52;)
genome : 35,973,800 - 36,003,447 (29,648)
query : 1 - 3,550 (3,550/3,550)
13 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.6.4.13
InterPro :
IPR001650 : Helicase, C-terminal
IPR011545 : DEAD/DEAH box helicase domain
IPR014001 : Helicase superfamily 1/2, ATP-binding domain
IPR014014 : RNA helicase, DEAD-box type, Q motif
GO :
0003676 : Molecular Function : nucleic acid binding
0004386 : Molecular Function : helicase activity
0005524 : Molecular Function : ATP binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16, cyto 13.5, cyto_plas 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202410)
HIX0202410
HIT000704338 (
ENST00000592520
)
(Probable ATP-dependent RNA helicase DDX52; EC=3.6.4.13; ATP-dependent RNA helicase ROK1-like; DEAD box protein 52;)
genome : 35,973,800 - 36,003,447 (29,648)
query : 1 - 3,550 (3,550/3,550)
13 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.6.4.13
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16, cyto 13.5, cyto_plas 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202410)
HIX0202410
HIT000086678
(
BC006489
)
(Probable ATP-dependent RNA helicase DDX52; EC=3.6.4.13; ATP-dependent RNA helicase ROK1-like; DEAD box protein 52;)
genome : 35,979,813 - 36,003,443 (23,631)
query : 1 - 1,643 (1,643/1,662)
13 exons
identity = 0.999
3'(1.000;1.000)5'
coverage = 0.999
EC number :
EC 3.6.4.13
InterPro :
IPR001650 : Helicase, C-terminal
IPR011545 : DEAD/DEAH box helicase domain
IPR014001 : Helicase superfamily 1/2, ATP-binding domain
IPR014014 : RNA helicase, DEAD-box type, Q motif
GO :
0003676 : Molecular Function : nucleic acid binding
0004386 : Molecular Function : helicase activity
0005524 : Molecular Function : ATP binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15, cyto_nucl 14, cyto 11, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202410)
HIX0202410
HIT000018528
(
AK093661
)
(Probable ATP-dependent RNA helicase DDX52; EC=3.6.4.13; ATP-dependent RNA helicase ROK1-like; DEAD box protein 52;)
genome : 35,979,813 - 36,003,475 (23,663)
query : 1 - 2,027 (2,027/2,028)
12 exons
identity = 0.998
3'(1.000;0.991)5'
coverage = 1.000
EC number :
EC 3.6.4.13
InterPro :
IPR011545 : DEAD/DEAH box helicase domain
IPR014001 : Helicase superfamily 1/2, ATP-binding domain
IPR014014 : RNA helicase, DEAD-box type, Q motif
GO :
0003676 : Molecular Function : nucleic acid binding
0005524 : Molecular Function : ATP binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 12.5, nucl 4.5, extr 3, mito 2,
E.R. 2, pero 2, E.R._mito 2, mito_pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202410)
HIX0202410
HIT000565022 (
ENST00000460080
)
(Probable ATP-dependent RNA helicase DDX52; EC=3.6.4.13; ATP-dependent RNA helicase ROK1-like; DEAD box protein 52;)
genome : 35,979,813 - 36,003,475 (23,663)
query : 1 - 2,027 (2,027/2,027)
12 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.6.4.13
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, cyto_nucl 13.5, nucl 6, extr 2, mito 2,
E.R. 2, pero 2, E.R._mito 2, mito_pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202410)
HIX0202410
HIT000699275 (
ENST00000587431
)
(Probable ATP-dependent RNA helicase DDX52; EC=3.6.4.13; ATP-dependent RNA helicase ROK1-like; DEAD box protein 52;)
genome : 35,986,872 - 36,003,462 (16,591)
query : 1 - 776 (776/776)
6 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.6.4.13
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 24.5, cyto_nucl 14.5, nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202410)
HIX0202410
HIT000087896
(
BC012557
)
(Probable ATP-dependent RNA helicase DDX52; EC=3.6.4.13; ATP-dependent RNA helicase ROK1-like; DEAD box protein 52;)
genome : 35,990,853 - 36,002,800 (11,948)
query : 5 - 1,864 (1,860/1,897)
4 exons
identity = 0.998
3'(0.995;1.000)5'
coverage = 0.997
EC number :
EC 3.6.4.13
InterPro :
IPR014014 : RNA helicase, DEAD-box type, Q motif
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17.5, cyto_nucl 15.5, cyto 8.5, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202410)
HIX0202410
HIT000595468 (
ENST00000491963
)
(Probable ATP-dependent RNA helicase DDX52; EC=3.6.4.13; ATP-dependent RNA helicase ROK1-like; DEAD box protein 52;)
genome : 35,990,839 - 36,002,800 (11,962)
query : 1 - 1,872 (1,872/1,872)
4 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.6.4.13
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17.5, cyto_nucl 15.5, cyto 8.5, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202410)
HIX0224508
HIT000698015 (
ENST00000586163
)
(Conserved hypothetical protein.)
genome : 36,002,976 - 36,044,255 (41,280)
query : 1 - 628 (628/628)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224508)
HIX0224508
HIT000698795 (
ENST00000586950
)
(Conserved hypothetical protein.)
genome : 36,003,458 - 36,036,294 (32,837)
query : 1 - 575 (575/575)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 29, nucl 1.5, cyto_nucl 1.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224508)
HIX0225133
HIT000704732 (
ENST00000592914
)
(Conserved hypothetical protein.)
genome : 36,009,162 - 36,010,922 (1,761)
query : 1 - 607 (607/607)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225133)
HIX0013750
HIT000654183 (
NM_001165923
)
(Hepatocyte nuclear factor 1-beta isoform 2.)
genome : 36,046,434 - 36,105,096 (58,663)
query : 1 - 2,758 (2,758/2,773)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013750)
HIX0013750
HIT000038098
(
BC017714
)
(Hepatocyte nuclear factor 1-beta; HNF-1-beta; HNF-1B; Homeoprotein LFB3; Transcription factor 2; TCF-2; Variant hepatic nuclear factor 1; vHNF1;)
genome : 36,046,434 - 36,105,063 (58,630)
query : 1 - 2,803 (2,803/2,818)
9 exons
identity = 0.999
3'(0.997;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
InterPro :
IPR006897 : Hepatocyte nuclear factor 1, beta isoform, C-terminal
IPR006899 : Hepatocyte nuclear factor 1, N-terminal
IPR010982 : Lambda repressor-like, DNA-binding domain
IPR023219 : Hepatocyte nuclear factor 1, dimerisation domain
GO :
0003677 : Molecular Function : DNA binding
0005634 : Cellular Component : nucleus
0045893 : Biological Process : positive regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013750)
HIX0013750
HIT000322295
(
X58840
)
Representative transcript
(Hepatocyte nuclear factor 1-beta; HNF-1-beta; HNF-1B; Homeoprotein LFB3; Transcription factor 2; TCF-2; Variant hepatic nuclear factor 1; vHNF1;)
genome : 36,046,434 - 36,105,069 (58,636)
query : 1 - 2,809 (2,809/2,816)
9 exons
identity = 0.998
3'(0.995;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.998)5'
coverage = 0.998
InterPro :
IPR006897 : Hepatocyte nuclear factor 1, beta isoform, C-terminal
IPR006899 : Hepatocyte nuclear factor 1, N-terminal
IPR010982 : Lambda repressor-like, DNA-binding domain
IPR023219 : Hepatocyte nuclear factor 1, dimerisation domain
GO :
0003677 : Molecular Function : DNA binding
0005634 : Cellular Component : nucleus
0045893 : Biological Process : positive regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013750)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK004837
Danio
sp. (Zebrafish) : BC129147
Gallus
sp. (Chicken) : CR385291
Pongo
sp. (Orangutan) : CR857451
Canis
sp. (Dog) : ENSCAFT00000028830
Oryzias
sp. (Medaka) : ENSORLT00000005739
Rattus
sp. (Rat) : ENSRNOT00000003507
Tetraodon
sp. (Tetraodon) : GSTENT00030107001
Takifugu
sp. (Fugu) : SINFRUT00000136748
Macaca
sp. (Macaque) : XM_001112182
Monodelphis
sp. (Opossum) : XM_001373053
Equus
sp. (Horse) : XM_001503871
Pan
sp. (Chimpanzee) : XM_523618
HIX0013750
HIT000197501 (
NM_000458
)
(Hepatocyte nuclear factor 1-beta; HNF-1-beta; HNF-1B; Homeoprotein LFB3; Transcription factor 2; TCF-2; Variant hepatic nuclear factor 1; vHNF1;)
genome : 36,046,434 - 36,105,096 (58,663)
query : 1 - 2,836 (2,836/2,842)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013750)
HIX0013750
HIT000103937 (
ENST00000225893
)
(Hepatocyte nuclear factor 1-beta; HNF-1-beta; HNF-1B; Homeoprotein LFB3; Transcription factor 2; TCF-2; Variant hepatic nuclear factor 1; vHNF1;)
genome : 36,046,434 - 36,105,237 (58,804)
query : 1 - 2,977 (2,977/2,977)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013750)
HIX0013750
HIT000491257
(
AK296633
)
(Hepatocyte nuclear factor 1-beta isoform 2.)
genome : 36,047,175 - 36,105,050 (57,876)
query : 1 - 1,971 (1,971/1,971)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
InterPro :
IPR006897 : Hepatocyte nuclear factor 1, beta isoform, C-terminal
IPR006899 : Hepatocyte nuclear factor 1, N-terminal
IPR010982 : Lambda repressor-like, DNA-binding domain
IPR023219 : Hepatocyte nuclear factor 1, dimerisation domain
GO :
0003677 : Molecular Function : DNA binding
0005634 : Cellular Component : nucleus
0045893 : Biological Process : positive regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013750)
HIX0013750
HIT000674420 (
ENST00000561193
)
(Hepatocyte nuclear factor 1-beta isoform 2.)
genome : 36,047,175 - 36,105,050 (57,876)
query : 1 - 1,971 (1,971/1,971)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013750)
HIX0013750
HIT000525209 (
ENST00000427275
)
(Hepatocyte nuclear factor 1-beta isoform 2.)
genome : 36,047,245 - 36,105,009 (57,765)
query : 1 - 1,546 (1,546/1,546)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013750)
HIX0013750
HIT000649193
(
HM116553
)
(Hepatocyte nuclear factor 1-beta isoform 2.)
genome : 36,047,245 - 36,105,009 (57,765)
query : 1 - 1,860 (1,860/1,860)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
InterPro :
IPR006897 : Hepatocyte nuclear factor 1, beta isoform, C-terminal
IPR006899 : Hepatocyte nuclear factor 1, N-terminal
IPR010982 : Lambda repressor-like, DNA-binding domain
IPR023219 : Hepatocyte nuclear factor 1, dimerisation domain
GO :
0003677 : Molecular Function : DNA binding
0005634 : Cellular Component : nucleus
0045893 : Biological Process : positive regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013750)
HIX0013750
HIT000649194
(
HM116554
)
(Hepatocyte nuclear factor 1-beta; HNF-1-beta; HNF-1B; Homeoprotein LFB3; Transcription factor 2; TCF-2; Variant hepatic nuclear factor 1; vHNF1;)
genome : 36,047,245 - 36,105,009 (57,765)
query : 1 - 1,646 (1,646/1,646)
8 exons
identity = 0.989
3'(1.000;1.000;1.000;1.000;1.000;0.898;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR006899 : Hepatocyte nuclear factor 1, N-terminal
IPR010982 : Lambda repressor-like, DNA-binding domain
IPR023219 : Hepatocyte nuclear factor 1, dimerisation domain
GO :
0003677 : Molecular Function : DNA binding
0005634 : Cellular Component : nucleus
0045893 : Biological Process : positive regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23, cyto_nucl 14.5, extr 4, cyto 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013750)
HIX0013750
HIT000649195
(
HM116555
)
(Hepatocyte nuclear factor 1-beta; HNF-1-beta; HNF-1B; Homeoprotein LFB3; Transcription factor 2; TCF-2; Variant hepatic nuclear factor 1; vHNF1;)
genome : 36,047,245 - 36,105,009 (57,765)
query : 1 - 1,820 (1,820/1,820)
8 exons
identity = 0.999
3'(1.000;1.000;1.000;0.994;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR006897 : Hepatocyte nuclear factor 1, beta isoform, C-terminal
IPR006899 : Hepatocyte nuclear factor 1, N-terminal
IPR010982 : Lambda repressor-like, DNA-binding domain
IPR023219 : Hepatocyte nuclear factor 1, dimerisation domain
GO :
0003677 : Molecular Function : DNA binding
0005634 : Cellular Component : nucleus
0045893 : Biological Process : positive regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013750)
HIX0013750
HIT000649196
(
HM116556
)
(Hepatocyte nuclear factor 1-beta isoform 2.)
genome : 36,047,245 - 36,105,009 (57,765)
query : 1 - 1,546 (1,546/1,546)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR006897 : Hepatocyte nuclear factor 1, beta isoform, C-terminal
IPR006899 : Hepatocyte nuclear factor 1, N-terminal
IPR010982 : Lambda repressor-like, DNA-binding domain
IPR023219 : Hepatocyte nuclear factor 1, dimerisation domain
GO :
0003677 : Molecular Function : DNA binding
0005634 : Cellular Component : nucleus
0045893 : Biological Process : positive regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013750)
HIX0013750
HIT000673267 (
ENST00000560016
)
(Hepatocyte nuclear factor 1-beta; HNF-1-beta; HNF-1B; Homeoprotein LFB3; Transcription factor 2; TCF-2; Variant hepatic nuclear factor 1; vHNF1;)
genome : 36,047,245 - 36,105,009 (57,765)
query : 1 - 1,819 (1,819/1,819)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013750)
HIX0013750
HIT000422928
(
AK290131
)
(Hepatocyte nuclear factor 1-beta; HNF-1-beta; HNF-1B; Homeoprotein LFB3; Transcription factor 2; TCF-2; Variant hepatic nuclear factor 1; vHNF1;)
genome : 36,047,298 - 36,105,050 (57,753)
query : 1 - 1,926 (1,926/1,926)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
InterPro :
IPR006897 : Hepatocyte nuclear factor 1, beta isoform, C-terminal
IPR006899 : Hepatocyte nuclear factor 1, N-terminal
IPR010982 : Lambda repressor-like, DNA-binding domain
IPR023219 : Hepatocyte nuclear factor 1, dimerisation domain
GO :
0003677 : Molecular Function : DNA binding
0005634 : Cellular Component : nucleus
0045893 : Biological Process : positive regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013750)
HIX0013750
HIT000493017
(
AK298393
)
(Hepatocyte nuclear factor 1-beta; HNF-1-beta; HNF-1B; Homeoprotein LFB3; Transcription factor 2; TCF-2; Variant hepatic nuclear factor 1; vHNF1;)
genome : 36,047,299 - 36,105,050 (57,752)
query : 1 - 1,794 (1,794/1,794)
10 exons
identity = 0.999
3'(1.000;1.000;1.000;0.992;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR006897 : Hepatocyte nuclear factor 1, beta isoform, C-terminal
IPR006899 : Hepatocyte nuclear factor 1, N-terminal
IPR010982 : Lambda repressor-like, DNA-binding domain
GO :
0003677 : Molecular Function : DNA binding
0005634 : Cellular Component : nucleus
0045893 : Biological Process : positive regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013750)
HIX0013750
HIT000268508
(
CR536572
)
(Hepatocyte nuclear factor 1-beta; HNF-1-beta; HNF-1B; Homeoprotein LFB3; Transcription factor 2; TCF-2; Variant hepatic nuclear factor 1; vHNF1;)
genome : 36,047,375 - 36,104,875 (57,501)
query : 1 - 1,674 (1,674/1,674)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
InterPro :
IPR006897 : Hepatocyte nuclear factor 1, beta isoform, C-terminal
IPR006899 : Hepatocyte nuclear factor 1, N-terminal
IPR010982 : Lambda repressor-like, DNA-binding domain
IPR023219 : Hepatocyte nuclear factor 1, dimerisation domain
GO :
0003677 : Molecular Function : DNA binding
0005634 : Cellular Component : nucleus
0045893 : Biological Process : positive regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013750)
HIX0013750
HIT000100046
(
BT007126
)
(Hepatocyte nuclear factor 1-beta; HNF-1-beta; HNF-1B; Homeoprotein LFB3; Transcription factor 2; TCF-2; Variant hepatic nuclear factor 1; vHNF1;)
genome : 36,059,082 - 36,104,875 (45,794)
query : 1 - 1,653 (1,653/1,674)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 0.987
InterPro :
IPR006897 : Hepatocyte nuclear factor 1, beta isoform, C-terminal
IPR006899 : Hepatocyte nuclear factor 1, N-terminal
IPR010982 : Lambda repressor-like, DNA-binding domain
IPR023219 : Hepatocyte nuclear factor 1, dimerisation domain
GO :
0003677 : Molecular Function : DNA binding
0005634 : Cellular Component : nucleus
0045893 : Biological Process : positive regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013750)
HIX0013750
HIT000323157
(
X71348
)
(Hepatocyte nuclear factor 1-beta; HNF-1-beta; HNF-1B; Homeoprotein LFB3; Transcription factor 2; TCF-2; Variant hepatic nuclear factor 1; vHNF1;)
genome : 36,088,615 - 36,093,810 (5,196)
query : 1 - 3,437 (3,437/3,450)
2 exons
identity = 0.982
3'(0.980;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013750)
HIX0013750
HIT000564629 (
ENST00000459669
)
(Hepatocyte nuclear factor 1-beta; HNF-1-beta; HNF-1B; Homeoprotein LFB3; Transcription factor 2; TCF-2; Variant hepatic nuclear factor 1; vHNF1;)
genome : 36,088,615 - 36,093,810 (5,196)
query : 1 - 3,468 (3,468/3,481)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013750)
HIX0224610
HIT000671431 (
ENST00000558143
)
(Hypothetical short protein.)
genome : 36,105,206 - 36,108,563 (3,358)
query : 1 - 660 (660/660)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, mito 5, cyto 3, mito_nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224610)
HIX0173993
HIT000518880 (
ENST00000420946
)
(Hypothetical short protein.)
genome : 36,158,869 - 36,162,759 (3,891)
query : 1 - 478 (478/478)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11.5, extr 11, cyto_nucl 8, mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173993)
HIX0013751
HIT000698355 (
ENST00000586509
)
(14-3-3 protein epsilon; Suppressor of Ras1 3-9;)
genome : 36,187,925 - 36,214,831 (26,907)
query : 1 - 639 (639/639)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20.5, cyto_nucl 11, extr 6, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013751)
HIX0013751
HIT000019751
(
AK094896
)
Representative transcript
(14-3-3 protein epsilon; 14-3-3E;)
genome : 36,202,573 - 36,244,363 (41,791)
query : 1 - 2,455 (2,455/2,455)
7 exons
identity = 1.000
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000308 : 14-3-3 protein
IPR023410 : 14-3-3 domain
GO :
0019904 : Molecular Function : protein domain specific binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 24, cyto_nucl 14.5, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013751)
Ortholog candidate ( ->
Evola
)
Tetraodon
sp. (Tetraodon) : CR721813
Takifugu
sp. (Fugu) : SINFRUT00000144697
Pan
sp. (Chimpanzee) : XM_511434
HIX0013751
HIT000562418 (
NR_024178
)
(14-3-3 protein epsilon; 14-3-3E;)
genome : 36,202,573 - 36,244,363 (41,791)
query : 1 - 2,455 (2,455/2,455)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 24, cyto_nucl 14.5, extr 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013751)
HIX0013751
HIT000702559 (
ENST00000590732
)
(14-3-3 protein epsilon; 14-3-3E;)
genome : 36,202,573 - 36,244,363 (41,791)
query : 1 - 2,455 (2,455/2,455)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 24, cyto_nucl 14.5, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013751)
HIX0013751
HIT000390879
(
BC132826
)
(14-3-3 protein epsilon; 14-3-3E;)
genome : 36,203,190 - 36,233,926 (30,737)
query : 1 - 1,697 (1,697/1,697)
5 exons
identity = 0.999
3'(1.000;1.000;1.000;0.976;1.000)5'
coverage = 1.000
InterPro :
IPR023410 : 14-3-3 domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, cyto 13.5, cyto_nucl 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013751)
HIX0013751
HIT000502749
(
BC144329
)
(14-3-3 protein epsilon; 14-3-3E;)
genome : 36,203,191 - 36,233,926 (30,736)
query : 1 - 1,696 (1,696/1,696)
5 exons
identity = 0.999
3'(1.000;1.000;1.000;0.976;1.000)5'
coverage = 1.000
InterPro :
IPR023410 : 14-3-3 domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, cyto 13.5, cyto_nucl 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013751)
HIX0013751
HIT000702535 (
ENST00000590708
)
(14-3-3 protein epsilon; 14-3-3E;)
genome : 36,213,922 - 36,214,847 (926)
query : 1 - 312 (312/312)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20.5, cyto_nucl 13, extr 6, nucl 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013751)
HIX0224523
HIT000699895_03 (
ENST00000588054
)
(Hypothetical short protein.)
genome : 36,283,085 - 36,284,366 (1,282)
query : 1 - 453 (453/453)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto 11, mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224523)
HIX0224523
HIT000701783_03 (
ENST00000589945
)
(Hypothetical short protein.)
genome : 36,283,085 - 36,284,366 (1,282)
query : 1 - 453 (453/453)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto 11, mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224523)
HIX0173526
HIT000486114_04 (
NM_001123391
)
(TBC1 domain family member 3; Prostate cancer gene 17 protein; Protein TRE17-alpha; Rab GTPase-activating protein PRC17;)
genome : 36,283,960 - 36,295,098 (11,139)
query : 1 - 2,305 (2,305/2,305)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;0.991;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 12, nucl 8, cysk 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173526)
HIX0173526
HIT000210496_03 (
NM_032258
)
(TBC1 domain family member 3F;)
genome : 36,283,960 - 36,294,915 (10,956)
query : 1 - 2,122 (2,122/2,122)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 12.5, nucl 7.5, cysk 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173526)
HIX0173526
HIT000308923_02 (
ENST00000354664
)
(TBC1 domain family member 3; Prostate cancer gene 17 protein; Protein TRE17-alpha; Rab GTPase-activating protein PRC17;)
genome : 36,283,960 - 36,294,915 (10,956)
query : 1 - 2,122 (2,122/2,122)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;0.991;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 12, nucl 8, cysk 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173526)
HIX0173526
HIT000682005_03 (
ENST00000569055
)
(TBC1 domain family member 3H;)
genome : 36,283,960 - 36,294,909 (10,950)
query : 1 - 2,116 (2,116/2,116)
14 exons
identity = 0.998
5'(0.994;1.000;1.000;1.000;1.000;0.991;0.982;
1.000;1.000;1.000;1.000;1.000;1.000;0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 12, nucl 8, cysk 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173526)
HIX0173526
HIT000124995_02 (
ENST00000327454
)
(TBC1 domain family member 3F;)
genome : 36,283,971 - 36,294,912 (10,942)
query : 1 - 2,108 (2,108/2,108)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 12.5, nucl 7.5, cysk 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173526)
HIX0173526
HIT000677320_01 (
ENST00000564188
)
(TBC1 domain family member 3F;)
genome : 36,283,971 - 36,294,912 (10,942)
query : 1 - 2,108 (2,108/2,108)
14 exons
identity = 0.998
5'(0.993;1.000;1.000;1.000;1.000;0.991;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 12.5, nucl 7.5, cysk 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173526)
HIX0173526
HIT000700430_02 (
ENST00000588590
)
(Hypothetical short protein.)
genome : 36,283,980 - 36,284,726 (747)
query : 1 - 533 (533/533)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173526)
HIX0173526
HIT000496688
(
AK302064
)
(TBC1 domain family member 3F.)
genome : 36,284,003 - 36,294,867 (10,865)
query : 2 - 2,255 (2,254/2,255)
15 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.992;1.000;1.000;1.000;0.993;
0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, cyto_nucl 12, nucl 10.5, extr 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173526)
HIX0173526
HIT000701488_05 (
ENST00000589650
)
(Hypothetical short protein.)
genome : 36,284,005 - 36,284,725 (721)
query : 1 - 578 (578/578)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173526)
HIX0173526
HIT000265700_02
(
BC078140
)
(TBC1 domain family member 3F.)
genome : 36,284,016 - 36,294,915 (10,900)
query : 1 - 1,900 (1,900/1,924)
12 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;0.991;1.000;
1.000;1.000;1.000;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR000195 : Rab-GTPase-TBC domain
GO :
0005097 : Molecular Function : Rab GTPase activator activity
0032313 : Biological Process : regulation of Rab GTPase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, cyto_nucl 14, nucl 9, cysk 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173526)
HIX0173526
HIT000676578_01 (
ENST00000563420
)
(TBC1 domain family member 3F.)
genome : 36,284,016 - 36,294,915 (10,900)
query : 1 - 1,900 (1,900/1,900)
12 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;0.991;1.000;
1.000;1.000;1.000;1.000;0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, cyto_nucl 14, nucl 9, cysk 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173526)
HIX0173526
HIT000359454_02 (
ENST00000378174
)
(TBC1 domain family member 3F;)
genome : 36,284,016 - 36,294,914 (10,899)
query : 1 - 1,899 (1,899/1,899)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, cyto_nucl 14, nucl 9, cysk 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173526)
HIX0173526
HIT000675957_01 (
ENST00000562779
)
(TBC1 domain family member 3H;)
genome : 36,284,017 - 36,294,915 (10,899)
query : 1 - 2,065 (2,065/2,065)
14 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.982;
1.000;1.000;1.000;1.000;1.000;1.000;0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 12.5, nucl 7.5, cysk 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173526)
HIX0173526
HIT000496447
(
AK301823
)
(TBC1 domain family member 3G.)
genome : 36,284,018 - 36,294,914 (10,897)
query : 1 - 1,876 (1,876/1,876)
12 exons
identity = 0.997
5'(1.000;1.000;1.000;1.000;1.000;0.991;0.978;
1.000;1.000;1.000;1.000;0.997)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, mito 10, cyto 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173526)
HIX0173526
HIT000025456_03
(
AL136860
)
(TBC1 domain family member 3F;)
genome : 36,284,019 - 36,294,915 (10,897)
query : 1 - 2,063 (2,063/2,072)
14 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.991;
0.980;1.000;1.000;1.000;0.990;0.993;0.999)3'
coverage = 1.000
InterPro :
IPR000195 : Rab-GTPase-TBC domain
GO :
0005097 : Molecular Function : Rab GTPase activator activity
0032313 : Biological Process : regulation of Rab GTPase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 13, nucl 7.5, cysk 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173526)
HIX0173526
HIT000098774_02
(
BC047739
)
Representative transcript
(TBC1 domain family member 3.)
genome : 36,284,029 - 36,294,915 (10,887)
query : 1 - 2,469 (2,469/2,497)
15 exons
identity = 0.997
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.991;
1.000;0.980;1.000;1.000;1.000;0.997;0.993;
0.995)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, cyto_nucl 12, nucl 10.5, extr 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173526)
HIX0173526
HIT000540720 (
ENST00000442786
)
(TBC1 domain family member 3F.)
genome : 36,284,029 - 36,294,915 (10,887)
query : 1 - 2,469 (2,469/2,469)
15 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, cyto_nucl 12, nucl 10.5, extr 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173526)
HIX0173526
HIT000619933_01 (
ENST00000520599
)
(TBC1 domain family member 3.)
genome : 36,284,040 - 36,294,915 (10,876)
query : 1 - 2,505 (2,505/2,505)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;0.991;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13, cyto_nucl 13, cyto 11, cysk 3, extr 2,
mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173526)
HIX0173526
HIT000613402_01 (
ENST00000513862
)
(TBC1 domain family member 3F.)
genome : 36,284,040 - 36,294,912 (10,873)
query : 1 - 2,502 (2,502/2,502)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16, cyto_nucl 14, cyto 10, cysk 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173526)
HIX0173526
HIT000605551_01 (
ENST00000505415
)
(TBC1 domain family member 3F.)
genome : 36,284,791 - 36,294,912 (10,122)
query : 1 - 2,650 (2,650/2,650)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, cyto_nucl 15.5, nucl 8, cysk 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173526)
HIX0173526
HIT000020240_03
(
AK095385
)
(TBC1 domain family member 3F.)
genome : 36,284,791 - 36,294,909 (10,119)
query : 1 - 2,647 (2,647/2,647)
12 exons
identity = 0.999
5'(0.998;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.993;1.000)3'
coverage = 1.000
InterPro :
IPR000195 : Rab-GTPase-TBC domain
GO :
0005097 : Molecular Function : Rab GTPase activator activity
0032313 : Biological Process : regulation of Rab GTPase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, cyto_nucl 15.5, nucl 8, cysk 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173526)
HIX0173526
HIT000618882_01 (
ENST00000519532
)
(TBC1 domain family member 3.)
genome : 36,284,791 - 36,294,909 (10,119)
query : 1 - 2,647 (2,647/2,647)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;0.991;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, cyto_nucl 15.5, nucl 8, cysk 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173526)
HIX0173526
HIT000487400_01
(
AB449884
)
(TBC1 domain family member 3F;)
genome : 36,285,545 - 36,294,600 (9,056)
query : 1 - 1,650 (1,650/1,650)
13 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.980;
1.000;1.000;1.000;0.990;0.993;1.000)3'
coverage = 1.000
InterPro :
IPR000195 : Rab-GTPase-TBC domain
GO :
0005097 : Molecular Function : Rab GTPase activator activity
0032313 : Biological Process : regulation of Rab GTPase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 12.5, nucl 7.5, cysk 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173526)
HIX0173526
HIT000676218_01 (
ENST00000563049
)
(TBC1 domain family member 3.)
genome : 36,285,545 - 36,294,437 (8,893)
query : 1 - 1,488 (1,488/1,488)
13 exons
identity = 0.995
5'(0.986;1.000;1.000;1.000;0.991;1.000;0.980;
1.000;1.000;1.000;1.000;0.987;0.993)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 13.5, nucl 9, cysk 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173526)
HIX0173526
HIT000617926_01 (
ENST00000518551
)
(TBC1 domain family member 3.)
genome : 36,285,777 - 36,294,915 (9,139)
query : 20 - 2,097 (2,078/2,097)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;0.991;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.991
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 13.5, nucl 11, E.R. 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173526)
HIX0173526
HIT000497883_01
(
AK303259
)
(TBC1 domain family member 3F.)
genome : 36,285,777 - 36,294,914 (9,138)
query : 20 - 2,096 (2,077/2,096)
12 exons
identity = 0.998
5'(1.000;0.996;1.000;0.991;1.000;1.000;1.000;
1.000;1.000;1.000;0.993;0.999)3'
coverage = 0.991
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, extr 6, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173526)
HIX0173526
HIT000042706_03
(
AK122833
)
(TBC1 domain family member 3F.)
genome : 36,286,047 - 36,294,914 (8,868)
query : 1 - 3,389 (3,389/3,389)
10 exons
identity = 0.996
5'(0.995;1.000;1.000;1.000;1.000;0.989;1.000;
1.000;0.993;0.999)3'
coverage = 1.000
InterPro :
IPR000195 : Rab-GTPase-TBC domain
GO :
0005097 : Molecular Function : Rab GTPase activator activity
0032313 : Biological Process : regulation of Rab GTPase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22.5, cyto_nucl 14.5, cyto 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173526)
HIX0173526
HIT000638469 (
ENST00000539424
)
(TBC1 domain family member 3F.)
genome : 36,286,047 - 36,294,914 (8,868)
query : 1 - 3,389 (3,389/3,389)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 13, nucl 5.5, E.R. 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173526)
HIX0212315
HIT000446611_09
(
DQ580080
)
(Non-protein coding transcript.)
genome : 36,286,812 - 36,286,840 (29)
query : 1 - 29 (29/30)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 0.967
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0212315)
HIX0212315
HIT000464315_09
(
DQ597784
)
Representative transcript
(Non-protein coding transcript.)
genome : 36,286,816 - 36,286,845 (30)
query : 1 - 30 (30/31)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 0.968
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0212315)
HIX0212392
HIT000436962_09
(
DQ570431
)
Representative transcript
(Non-protein coding transcript.)
genome : 36,287,430 - 36,287,458 (29)
query : 1 - 29 (29/30)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 0.967
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0212392)
HIX0173526
HIT000463994_06
(
DQ597463
)
(Non-protein coding transcript.)
genome : 36,287,678 - 36,287,707 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173526)
HIX0173859
HIT000442217_09
(
DQ575686
)
(Non-protein coding transcript.)
genome : 36,288,029 - 36,288,058 (30)
query : 1 - 30 (30/31)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 0.968
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173859)
HIX0173859
HIT000442216_09
(
DQ575685
)
(Non-protein coding transcript.)
genome : 36,288,029 - 36,288,058 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173859)
HIX0173859
HIT000442218_09
(
DQ575687
)
(Non-protein coding transcript.)
genome : 36,288,030 - 36,288,058 (29)
query : 1 - 29 (29/30)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 0.967
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173859)
HIX0173859
HIT000467537_08
(
DQ601006
)
(Non-protein coding transcript.)
genome : 36,288,057 - 36,288,087 (31)
query : 1 - 31 (31/31)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173859)
HIX0173859
HIT000454437_08
(
DQ587906
)
Representative transcript
(Non-protein coding transcript.)
genome : 36,288,075 - 36,288,106 (32)
query : 1 - 32 (32/32)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173859)
HIX0212297
HIT000443159_09
(
DQ576628
)
(Non-protein coding transcript.)
genome : 36,288,613 - 36,288,641 (29)
query : 1 - 29 (29/30)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 0.967
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0212297)
HIX0212297
HIT000444083_09
(
DQ577552
)
Representative transcript
(Non-protein coding transcript.)
genome : 36,288,613 - 36,288,643 (31)
query : 1 - 31 (31/31)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0212297)
HIX0212415
HIT000438802_08
(
DQ572271
)
Representative transcript
(Non-protein coding transcript.)
genome : 36,289,577 - 36,289,607 (31)
query : 1 - 31 (31/31)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0212415)
HIX0173876
HIT000455977_10
(
DQ589446
)
Representative transcript
(Non-protein coding transcript.)
genome : 36,290,119 - 36,290,149 (31)
query : 1 - 31 (31/31)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173876)
HIX0212288
HIT000441335_09
(
DQ574804
)
Representative transcript
(Non-protein coding transcript.)
genome : 36,290,380 - 36,290,409 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0212288)
HIX0212288
HIT000441336_09
(
DQ574805
)
(Non-protein coding transcript.)
genome : 36,290,380 - 36,290,409 (30)
query : 1 - 30 (30/30)
1 exon
identity = 0.967
3'(0.967)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0212288)
HIX0212402
HIT000437923_08
(
DQ571392
)
Representative transcript
(Non-protein coding transcript.)
genome : 36,290,388 - 36,290,418 (31)
query : 1 - 31 (31/31)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0212402)
HIX0212288
HIT000449757_08
(
DQ583226
)
(Non-protein coding transcript.)
genome : 36,290,392 - 36,290,420 (29)
query : 3 - 31 (29/31)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 0.935
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0212288)
HIX0212308
HIT000445191_09
(
DQ578660
)
Representative transcript
(Non-protein coding transcript.)
genome : 36,291,366 - 36,291,397 (32)
query : 1 - 32 (32/32)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0212308)
HIX0212308
HIT000445192_09
(
DQ578661
)
(Non-protein coding transcript.)
genome : 36,291,367 - 36,291,397 (31)
query : 1 - 31 (31/32)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 0.969
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0212308)
HIX0212426
HIT000459109_08
(
DQ592578
)
Representative transcript
(Non-protein coding transcript.)
genome : 36,292,978 - 36,293,008 (31)
query : 1 - 31 (31/31)
1 exon
identity = 0.968
3'(0.968)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0212426)
HIX0224365
HIT000680203_02 (
ENST00000567184
)
(14-3-3 domain containing protein.)
genome : 36,325,777 - 36,325,884 (108)
query : 1 - 108 (108/108)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 24.5, cyto_nucl 15.5, nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224365)
HIX0224365
HIT000698020_02 (
ENST00000586168
)
(14-3-3 domain containing protein.)
genome : 36,325,779 - 36,325,884 (106)
query : 1 - 106 (106/106)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 24.5, cyto_nucl 15, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224365)
HIX0173523
HIT000027527_04
(
AL832615
)
Representative transcript
(Hypothetical short protein.)
genome : 36,327,870 - 36,334,833 (6,964)
query : 1 - 4,467 (4,467/4,471)
3 exons
identity = 0.992
3'(0.996;0.961;1.000)5'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
plas 26.5, extr_plas 14.5, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173523)
HIX0173523
HIT000017497_03
(
AK092630
)
(Hypothetical short protein.)
genome : 36,332,086 - 36,335,586 (3,501)
query : 1 - 2,485 (2,485/2,485)
2 exons
identity = 0.998
3'(0.997;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, cyto_nucl 10.5, extr 8, nucl 4, extr_plas 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173523)
HIX0039140
HIT000486114_03 (
NM_001123391
)
(TBC1 domain family member 3; Prostate cancer gene 17 protein; Protein TRE17-alpha; Rab GTPase-activating protein PRC17;)
genome : 36,337,528 - 36,348,666 (11,139)
query : 1 - 2,305 (2,305/2,305)
14 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 12, nucl 8, cysk 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039140)
HIX0039140
HIT000098774_03
(
BC047739
)
(TBC1 domain family member 3.)
genome : 36,337,711 - 36,348,597 (10,887)
query : 1 - 2,469 (2,469/2,497)
15 exons
identity = 0.997
3'(0.995;0.993;0.997;1.000;1.000;1.000;0.980;
1.000;1.000;1.000;1.000;0.996;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, cyto_nucl 12, nucl 10.5, extr 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039140)
HIX0039140
HIT000264504_05
(
BC071680
)
Representative transcript
(TBC1 domain family member 3H;)
genome : 36,337,711 - 36,348,609 (10,899)
query : 1 - 2,065 (2,065/2,090)
14 exons
identity = 0.999
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
0.982;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000195 : Rab-GTPase-TBC domain
GO :
0005097 : Molecular Function : Rab GTPase activator activity
0032313 : Biological Process : regulation of Rab GTPase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 12, nucl 8, cysk 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039140)
Ortholog candidate ( ->
Evola
)
Pan
sp. (Chimpanzee) : ENSPTRT00000015910
HIX0039140
HIT000265700_03
(
BC078140
)
(TBC1 domain family member 3F.)
genome : 36,337,711 - 36,348,610 (10,900)
query : 1 - 1,900 (1,900/1,924)
12 exons
identity = 0.998
3'(0.998;1.000;1.000;1.000;1.000;1.000;0.981;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000195 : Rab-GTPase-TBC domain
GO :
0005097 : Molecular Function : Rab GTPase activator activity
0032313 : Biological Process : regulation of Rab GTPase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, cyto_nucl 14, nucl 9, cysk 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039140)
HIX0039140
HIT000210496_04 (
NM_032258
)
(TBC1 domain family member 3F;)
genome : 36,337,711 - 36,348,666 (10,956)
query : 1 - 2,122 (2,122/2,122)
14 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.991;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 12.5, nucl 7.5, cysk 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039140)
HIX0039140
HIT000308923_03 (
ENST00000354664
)
(TBC1 domain family member 3; Prostate cancer gene 17 protein; Protein TRE17-alpha; Rab GTPase-activating protein PRC17;)
genome : 36,337,711 - 36,348,666 (10,956)
query : 1 - 2,122 (2,122/2,122)
14 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 12, nucl 8, cysk 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039140)
HIX0039140
HIT000623369 (
ENST00000524102
)
(TBC1 domain family member 3.)
genome : 36,337,711 - 36,348,623 (10,913)
query : 1 - 2,302 (2,302/2,302)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, cyto_nucl 12, nucl 10.5, extr 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039140)
HIX0039140
HIT000676578_02 (
ENST00000563420
)
(TBC1 domain family member 3F.)
genome : 36,337,711 - 36,348,610 (10,900)
query : 1 - 1,900 (1,900/1,900)
12 exons
identity = 0.998
3'(0.998;1.000;1.000;1.000;1.000;1.000;0.981;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, cyto_nucl 14, nucl 9, cysk 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039140)
HIX0039140
HIT000616904 (
ENST00000517507
)
(TBC1 domain family member 3.)
genome : 36,337,711 - 36,348,597 (10,887)
query : 1 - 2,469 (2,469/2,469)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, cyto_nucl 12, nucl 10.5, extr 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039140)
HIX0039140
HIT000619933_02 (
ENST00000520599
)
(TBC1 domain family member 3.)
genome : 36,337,711 - 36,348,586 (10,876)
query : 1 - 2,505 (2,505/2,505)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13, cyto_nucl 13, cyto 11, cysk 3, extr 2,
mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039140)
HIX0039140
HIT000617926_02 (
ENST00000518551
)
(TBC1 domain family member 3.)
genome : 36,337,711 - 36,346,849 (9,139)
query : 20 - 2,097 (2,078/2,097)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.991
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 13.5, nucl 11, E.R. 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039140)
HIX0039140
HIT000131653_03 (
ENST00000339023
)
(TBC1 domain family member 3; Prostate cancer gene 17 protein; Protein TRE17-alpha; Rab GTPase-activating protein PRC17;)
genome : 36,337,712 - 36,348,610 (10,899)
query : 1 - 1,899 (1,899/1,899)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 13, nucl 7.5, cysk 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039140)
HIX0039140
HIT000081462_08
(
AF540953
)
(TBC1 domain family member 3; Prostate cancer gene 17 protein; Protein TRE17-alpha; Rab GTPase-activating protein PRC17;)
genome : 36,337,712 - 36,347,081 (9,370)
query : 1 - 1,964 (1,964/1,964)
13 exons
identity = 0.998
3'(0.995;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000195 : Rab-GTPase-TBC domain
GO :
0005097 : Molecular Function : Rab GTPase activator activity
0032313 : Biological Process : regulation of Rab GTPase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 12, nucl 8, cysk 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039140)
HIX0039140
HIT000497883_02
(
AK303259
)
(TBC1 domain family member 3F.)
genome : 36,337,712 - 36,346,849 (9,138)
query : 20 - 2,096 (2,077/2,096)
12 exons
identity = 0.998
3'(0.999;0.993;1.000;1.000;1.000;1.000;1.000;
1.000;0.981;1.000;0.996;1.000)5'
coverage = 0.991
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, extr 6, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039140)
HIX0039140
HIT000042706_04
(
AK122833
)
(TBC1 domain family member 3F.)
genome : 36,337,712 - 36,346,579 (8,868)
query : 1 - 3,389 (3,389/3,389)
10 exons
identity = 0.996
3'(0.999;0.993;1.000;1.000;0.989;1.000;1.000;
1.000;0.991;0.994)5'
coverage = 1.000
InterPro :
IPR000195 : Rab-GTPase-TBC domain
GO :
0005097 : Molecular Function : Rab GTPase activator activity
0032313 : Biological Process : regulation of Rab GTPase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22.5, cyto_nucl 14.5, cyto 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039140)
HIX0039140
HIT000618846 (
ENST00000519496
)
(TBC1 domain family member 3.)
genome : 36,337,712 - 36,346,579 (8,868)
query : 1 - 3,389 (3,389/3,389)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto_nucl 15, cyto 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039140)
HIX0039140
HIT000124995_03 (
ENST00000327454
)
(TBC1 domain family member 3F;)
genome : 36,337,714 - 36,348,655 (10,942)
query : 1 - 2,108 (2,108/2,108)
14 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.991;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 12.5, nucl 7.5, cysk 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039140)
HIX0039140
HIT000677320_02 (
ENST00000564188
)
(TBC1 domain family member 3F;)
genome : 36,337,714 - 36,348,655 (10,942)
query : 1 - 2,108 (2,108/2,108)
14 exons
identity = 0.998
3'(0.998;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.981;1.000;1.000;1.000;1.000;0.993)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 12.5, nucl 7.5, cysk 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039140)
HIX0039140
HIT000613402_02 (
ENST00000513862
)
(TBC1 domain family member 3F.)
genome : 36,337,714 - 36,348,586 (10,873)
query : 1 - 2,502 (2,502/2,502)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.991;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16, cyto_nucl 14, cyto 10, cysk 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039140)
HIX0039140
HIT000605551_02 (
ENST00000505415
)
(TBC1 domain family member 3F.)
genome : 36,337,714 - 36,347,835 (10,122)
query : 1 - 2,650 (2,650/2,650)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.991;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, cyto_nucl 15.5, nucl 8, cysk 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039140)
HIX0039140
HIT000682005_04 (
ENST00000569055
)
(TBC1 domain family member 3H;)
genome : 36,337,717 - 36,348,666 (10,950)
query : 1 - 2,116 (2,116/2,116)
14 exons
identity = 0.998
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
0.982;1.000;1.000;1.000;1.000;1.000;0.994)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 12, nucl 8, cysk 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039140)
HIX0039140
HIT000618882_02 (
ENST00000519532
)
(TBC1 domain family member 3.)
genome : 36,337,717 - 36,347,835 (10,119)
query : 1 - 2,647 (2,647/2,647)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, cyto_nucl 15.5, nucl 8, cysk 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039140)
HIX0039140
HIT000432195
(
AK313329
)
(TBC1 domain family member 3; Prostate cancer gene 17 protein; Protein TRE17-alpha; Rab GTPase-activating protein PRC17;)
genome : 36,338,026 - 36,348,649 (10,624)
query : 1 - 1,790 (1,790/1,790)
14 exons
identity = 0.997
3'(0.998;0.993;0.980;1.000;1.000;0.992;0.980;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000195 : Rab-GTPase-TBC domain
GO :
0005097 : Molecular Function : Rab GTPase activator activity
0032313 : Biological Process : regulation of Rab GTPase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 13, nucl 7.5, cysk 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039140)
HIX0039140
HIT000487400_02
(
AB449884
)
(TBC1 domain family member 3F;)
genome : 36,338,026 - 36,347,081 (9,056)
query : 1 - 1,650 (1,650/1,650)
13 exons
identity = 0.998
3'(1.000;0.993;0.990;1.000;1.000;1.000;0.980;
1.000;0.991;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000195 : Rab-GTPase-TBC domain
GO :
0005097 : Molecular Function : Rab GTPase activator activity
0032313 : Biological Process : regulation of Rab GTPase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 12.5, nucl 7.5, cysk 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039140)
HIX0039140
HIT000680835 (
ENST00000567839
)
(TBC1 domain family member 3.)
genome : 36,338,146 - 36,345,475 (7,330)
query : 1 - 1,369 (1,369/1,417)
11 exons
identity = 0.961
3'(0.991;0.974;1.000;1.000;0.979;0.992;0.878;
0.964;0.880;0.790;0.946)5'
coverage = 0.966
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 15.5, nucl 12.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039140)
HIX0039140
HIT000676218_02 (
ENST00000563049
)
(TBC1 domain family member 3.)
genome : 36,338,189 - 36,347,081 (8,893)
query : 1 - 1,488 (1,488/1,488)
13 exons
identity = 0.995
3'(0.993;0.987;1.000;1.000;1.000;1.000;0.980;
1.000;1.000;1.000;1.000;1.000;0.986)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 13.5, nucl 9, cysk 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039140)
HIX0212427
HIT000459109_09
(
DQ592578
)
Representative transcript
(Non-protein coding transcript.)
genome : 36,339,618 - 36,339,648 (31)
query : 1 - 31 (31/31)
1 exon
identity = 0.968
5'(0.968)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0212427)
HIX0212309
HIT000445191_10
(
DQ578660
)
Representative transcript
(Non-protein coding transcript.)
genome : 36,341,229 - 36,341,260 (32)
query : 1 - 32 (32/32)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0212309)
HIX0212309
HIT000445192_10
(
DQ578661
)
(Non-protein coding transcript.)
genome : 36,341,229 - 36,341,259 (31)
query : 1 - 31 (31/32)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 0.969
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0212309)
HIX0212289
HIT000449757_09
(
DQ583226
)
(Non-protein coding transcript.)
genome : 36,342,206 - 36,342,234 (29)
query : 3 - 31 (29/31)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 0.935
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0212289)
HIX0212403
HIT000437923_09
(
DQ571392
)
Representative transcript
(Non-protein coding transcript.)
genome : 36,342,208 - 36,342,238 (31)
query : 1 - 31 (31/31)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0212403)
HIX0212289
HIT000441335_10
(
DQ574804
)
Representative transcript
(Non-protein coding transcript.)
genome : 36,342,217 - 36,342,246 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0212289)
HIX0212289
HIT000441336_10
(
DQ574805
)
(Non-protein coding transcript.)
genome : 36,342,217 - 36,342,246 (30)
query : 1 - 30 (30/30)
1 exon
identity = 0.967
5'(0.967)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0212289)
HIX0212416
HIT000438802_09
(
DQ572271
)
Representative transcript
(Non-protein coding transcript.)
genome : 36,343,019 - 36,343,049 (31)
query : 1 - 31 (31/31)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0212416)
HIX0039140
HIT000703377_04 (
ENST00000591555
)
(TBC1 domain family member 3G.)
genome : 36,343,949 - 36,346,849 (2,901)
query : 20 - 566 (547/566)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.966
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, extr 6, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039140)
HIX0212298
HIT000444083_10
(
DQ577552
)
Representative transcript
(Non-protein coding transcript.)
genome : 36,343,983 - 36,344,013 (31)
query : 1 - 31 (31/31)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0212298)
HIX0212298
HIT000443159_10
(
DQ576628
)
(Non-protein coding transcript.)
genome : 36,343,985 - 36,344,013 (29)
query : 1 - 29 (29/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 0.967
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0212298)
HIX0039140
HIT000703056_05 (
ENST00000591233
)
(Ubiquitin carboxyl-terminal hydrolase 6.)
genome : 36,344,325 - 36,345,084 (760)
query : 1 - 317 (317/327)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 0.969
EC number :
EC 3.4.19.12
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 19, cyto 8.5, cyto_nucl 5.5, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039140)
HIX0039140
HIT000701282_05 (
ENST00000589443
)
(TBC1 domain family member 3G.)
genome : 36,344,331 - 36,348,538 (4,208)
query : 1 - 251 (251/251)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 10.5, mito 9, nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039140)
HIX0173860
HIT000454437_09
(
DQ587906
)
Representative transcript
(Non-protein coding transcript.)
genome : 36,344,520 - 36,344,551 (32)
query : 1 - 32 (32/32)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173860)
HIX0173860
HIT000467537_09
(
DQ601006
)
(Non-protein coding transcript.)
genome : 36,344,539 - 36,344,569 (31)
query : 1 - 31 (31/31)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173860)
HIX0173860
HIT000442217_10
(
DQ575686
)
(Non-protein coding transcript.)
genome : 36,344,568 - 36,344,597 (30)
query : 1 - 30 (30/31)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 0.968
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173860)
HIX0173860
HIT000442216_10
(
DQ575685
)
(Non-protein coding transcript.)
genome : 36,344,568 - 36,344,597 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173860)
HIX0173860
HIT000442218_10
(
DQ575687
)
(Non-protein coding transcript.)
genome : 36,344,568 - 36,344,596 (29)
query : 1 - 29 (29/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 0.967
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173860)
HIX0039140
HIT000463994_07
(
DQ597463
)
(Non-protein coding transcript.)
genome : 36,344,919 - 36,344,948 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039140)
HIX0212393
HIT000436962_10
(
DQ570431
)
Representative transcript
(Non-protein coding transcript.)
genome : 36,345,168 - 36,345,196 (29)
query : 1 - 29 (29/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 0.967
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0212393)
HIX0212316
HIT000464315_10
(
DQ597784
)
Representative transcript
(Non-protein coding transcript.)
genome : 36,345,781 - 36,345,810 (30)
query : 1 - 30 (30/31)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 0.968
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0212316)
HIX0212316
HIT000446611_10
(
DQ580080
)
(Non-protein coding transcript.)
genome : 36,345,786 - 36,345,814 (29)
query : 1 - 29 (29/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 0.967
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0212316)
HIX0039140
HIT000700430_03 (
ENST00000588590
)
(Hypothetical short protein.)
genome : 36,347,900 - 36,348,646 (747)
query : 1 - 533 (533/533)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039140)
HIX0039140
HIT000701488_06 (
ENST00000589650
)
(Hypothetical short protein.)
genome : 36,347,901 - 36,348,621 (721)
query : 1 - 578 (578/578)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039140)
HIX0224093
HIT000262760
(
BC067792
)
(Puromycin-sensitive aminopeptidase; PSA; EC=3.4.11.14; Cytosol alanyl aminopeptidase; AAP-S;)
genome : 36,351,796 - 36,413,178 (61,383)
query : 1 - 1,572 (1,572/1,588)
12 exons
identity = 0.996
3'(0.995;1.000;0.994;0.983;1.000;1.000;0.996;
1.000;1.000;1.000;1.000;0.993)5'
coverage = 0.999
EC number :
EC 3.4.11.14
InterPro :
IPR001930 : Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase
IPR014782 : Peptidase M1, membrane alanine aminopeptidase, N-terminal
GO :
0006508 : Biological Process : proteolysis
0008237 : Molecular Function : metallopeptidase activity
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 22.5, cyto_nucl 14.5, mito 4, nucl 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224093)
HIX0224093
HIT000619578 (
ENST00000520237
)
(Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase family protein.)
genome : 36,351,796 - 36,413,269 (61,474)
query : 1 - 1,676 (1,676/1,676)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 31.5, cyto_mito 16.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224093)
HIX0224093
HIT000678138 (
ENST00000565045
)
(Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase family protein.)
genome : 36,351,796 - 36,413,269 (61,474)
query : 1 - 1,676 (1,676/1,676)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 31.5, cyto_mito 16.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224093)
HIX0224093
HIT000659715 (
NR_036750
)
(Peptidase M1, membrane alanine aminopeptidase, N-terminal domain containing protein.)
genome : 36,351,796 - 36,413,256 (61,461)
query : 1 - 1,652 (1,652/1,652)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 22.5, cyto_nucl 14.5, mito 4, nucl 3.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224093)
HIX0224093
HIT000619835 (
ENST00000520499
)
(Peptidase M1, membrane alanine aminopeptidase, N-terminal domain containing protein.)
genome : 36,351,796 - 36,413,178 (61,383)
query : 1 - 1,574 (1,574/1,574)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 22.5, cyto_nucl 14.5, mito 4, nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224093)
HIX0224093
HIT000679396 (
ENST00000566358
)
(Peptidase M1, membrane alanine aminopeptidase, N-terminal domain containing protein.)
genome : 36,351,796 - 36,413,178 (61,383)
query : 1 - 1,574 (1,574/1,574)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 22.5, cyto_nucl 14.5, mito 4, nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224093)
HIX0224093
HIT000045705_04
(
AK125832
)
Representative transcript
(Puromycin-sensitive aminopeptidase; PSA; EC=3.4.11.14; Cytosol alanyl aminopeptidase; AAP-S;)
genome : 36,351,803 - 36,421,858 (70,056)
query : 1 - 5,105 (5,105/5,105)
14 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;1.000;1.000;0.995;
0.997;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.4.11.14
InterPro :
IPR001930 : Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase
IPR014782 : Peptidase M1, membrane alanine aminopeptidase, N-terminal
GO :
0006508 : Biological Process : proteolysis
0008237 : Molecular Function : metallopeptidase activity
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 16.5, nucl 7.5, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224093)
HIX0224093
HIT000483716_03 (
ENST00000400815
)
(Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase family protein.)
genome : 36,351,803 - 36,421,858 (70,056)
query : 1 - 5,098 (5,098/5,098)
14 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, cyto_nucl 17, nucl 8, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224093)
HIX0224093
HIT000676874 (
ENST00000563731
)
(Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase family protein.)
genome : 36,351,803 - 36,421,858 (70,056)
query : 1 - 5,098 (5,098/5,098)
14 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, cyto_nucl 17, nucl 8, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224093)
HIX0224093
HIT000119372 (
ENST00000312412
)
(Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase family protein.)
genome : 36,351,803 - 36,413,159 (61,357)
query : 1 - 1,559 (1,559/1,559)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 31.5, cyto_mito 16.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224093)
HIX0224093
HIT000005158
(
AK021884
)
(Puromycin-sensitive aminopeptidase; PSA; EC=3.4.11.14; Cytosol alanyl aminopeptidase; AAP-S;)
genome : 36,351,803 - 36,358,000 (6,198)
query : 2 - 1,308 (1,307/1,308)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 0.999
EC number :
EC 3.4.11.14
InterPro :
IPR001930 : Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase
IPR014782 : Peptidase M1, membrane alanine aminopeptidase, N-terminal
GO :
0006508 : Biological Process : proteolysis
0008237 : Molecular Function : metallopeptidase activity
0008270 : Molecular Function : zinc ion binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 21, pero 4, lyso 3, cyto_pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224093)
HIX0224093
HIT000617391 (
ENST00000518004
)
(Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase family protein.)
genome : 36,351,936 - 36,421,841 (69,906)
query : 1 - 1,444 (1,444/1,444)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 22, extr 2, nucl 2, E.R. 2, pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224093)
HIX0224093
HIT000676002 (
ENST00000562825
)
(Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase family protein.)
genome : 36,351,936 - 36,421,841 (69,906)
query : 1 - 1,444 (1,444/1,444)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 22, extr 2, nucl 2, E.R. 2, pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224093)
HIX0224093
HIT000622373 (
ENST00000523089
)
(Peptidase M1, membrane alanine aminopeptidase, N-terminal domain containing protein.)
genome : 36,351,936 - 36,413,133 (61,198)
query : 1 - 1,292 (1,292/1,292)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 30.5, cyto_mito 17.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224093)
HIX0224093
HIT000678051 (
ENST00000564952
)
(Peptidase M1, membrane alanine aminopeptidase, N-terminal domain containing protein.)
genome : 36,351,936 - 36,413,133 (61,198)
query : 1 - 1,292 (1,292/1,292)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 30.5, cyto_mito 17.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224093)
HIX0224093
HIT000682876 (
ENST00000569955
)
(Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase family protein.)
genome : 36,351,936 - 36,398,275 (46,340)
query : 1 - 1,144 (1,144/1,144)
11 exons
identity = 0.997
3'(1.000;0.990;0.994;1.000;1.000;1.000;0.995;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 25, cyto_nucl 17, nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224093)
HIX0173680
HIT000015568_04
(
AK090701
)
Representative transcript
(Hypothetical protein.)
genome : 36,354,033 - 36,355,903 (1,871)
query : 1 - 1,849 (1,849/1,849)
1 exon
identity = 0.980
3'(0.980)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
plas 18, extr 6, mito 5.5, cyto_mito 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0173680)
HIX0224093
HIT000555944_02 (
ENST00000458010
)
(Hypothetical protein.)
genome : 36,411,461 - 36,413,059 (1,599)
query : 1 - 176 (176/176)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, cyto 3, nucl 2, mito 2, mito_nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224093)
HIX0013754
HIT000210581 (
NM_032351
)
(39S ribosomal protein L45, mitochondrial; L45mt; MRP-L45; Precursor;)
genome : 36,452,989 - 36,479,101 (26,113)
query : 1 - 1,705 (1,705/1,722)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 29
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013754)
HIX0013754
HIT000119412 (
ENST00000312513
)
(39S ribosomal protein L45, mitochondrial; L45mt; MRP-L45; Precursor;)
genome : 36,452,989 - 36,479,101 (26,113)
query : 1 - 1,705 (1,705/1,705)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013754)
HIX0013754
HIT000683101 (
ENST00000570192
)
(39S ribosomal protein L45, mitochondrial; L45mt; MRP-L45; Precursor;)
genome : 36,452,990 - 36,479,101 (26,112)
query : 1 - 1,704 (1,704/1,704)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013754)
HIX0013754
HIT000694426 (
ENST00000582535
)
(39S ribosomal protein L45, mitochondrial; L45mt; MRP-L45; Precursor;)
genome : 36,452,998 - 36,476,568 (23,571)
query : 1 - 630 (630/630)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 25, mito_nucl 13.8333, mito_pero 13.3333, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013754)
HIX0013754
HIT000488229
(
AK293605
)
(39S ribosomal protein L45, mitochondrial; L45mt; MRP-L45; Precursor;)
genome : 36,453,023 - 36,478,667 (25,645)
query : 1 - 1,237 (1,237/1,237)
8 exons
identity = 0.998
5'(0.995;1.000;1.000;1.000;0.980;1.000;1.000;
1.000)3'
coverage = 1.000
InterPro :
IPR007379 : Tim44-like domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 28, cyto 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013754)
HIX0013754
HIT000390172
(
BC130382
)
Representative transcript
(39S ribosomal protein L45, mitochondrial; L45mt; MRP-L45; Precursor;)
genome : 36,453,098 - 36,478,533 (25,436)
query : 1 - 1,028 (1,028/1,028)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
InterPro :
IPR007379 : Tim44-like domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 28, cyto 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013754)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK081922
Danio
sp. (Zebrafish) : BC050166
Bos
sp. (Cow) : BC102136
Gallus
sp. (Chicken) : BX931740
Tetraodon
sp. (Tetraodon) : CR678510
Equus
sp. (Horse) : ENSECAT00000000672
Oryzias
sp. (Medaka) : ENSORLT00000000132
Pongo
sp. (Orangutan) : ENSPPYT00000010354
Takifugu
sp. (Fugu) : SINFRUT00000159536
Rattus
sp. (Rat) : XM_001081368
Monodelphis
sp. (Opossum) : XM_001372079
Canis
sp. (Dog) : XM_845708
Pan
sp. (Chimpanzee) : XR_022393
HIX0013754
HIT000390174
(
BC130384
)
(39S ribosomal protein L45, mitochondrial; L45mt; MRP-L45; Precursor;)
genome : 36,453,098 - 36,478,533 (25,436)
query : 1 - 1,028 (1,028/1,028)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
InterPro :
IPR007379 : Tim44-like domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 28, cyto 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013754)
HIX0013754
HIT000249904
(
AK172741
)
(39S ribosomal protein L45, mitochondrial; L45mt; MRP-L45; Precursor;)
genome : 36,453,129 - 36,479,094 (25,966)
query : 1 - 1,558 (1,558/1,574)
8 exons
identity = 0.998
5'(1.000;1.000;1.000;0.990;1.000;1.000;1.000;
0.997)3'
coverage = 1.000
InterPro :
IPR007379 : Tim44-like domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 28, cyto 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013754)
HIX0013754
HIT000384161
(
AK225031
)
(39S ribosomal protein L45, mitochondrial; L45mt; MRP-L45; Precursor;)
genome : 36,453,129 - 36,478,634 (25,506)
query : 1 - 1,098 (1,098/1,098)
8 exons
identity = 0.999
5'(1.000;1.000;1.000;0.990;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
InterPro :
IPR007379 : Tim44-like domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 28, cyto 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013754)
HIX0013754
HIT000692672 (
ENST00000580762
)
(39S ribosomal protein L45, mitochondrial; L45mt; MRP-L45; Precursor;)
genome : 36,453,139 - 36,476,640 (23,502)
query : 1 - 782 (782/782)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 22, mito_nucl 14.8333, mito_pero 11.8333,
cyto_nucl 6.33333, nucl 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013754)
HIX0013754
HIT000338248
(
BC105297
)
(39S ribosomal protein L45, mitochondrial; L45mt; MRP-L45; Precursor;)
genome : 36,453,141 - 36,454,491 (1,351)
query : 1 - 152 (152/180)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 0.987
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 19, nucl 6.5, cyto_nucl 6.5, cyto 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013754)
HIX0013754
HIT000032692
(
BC006235
)
(39S ribosomal protein L45, mitochondrial; L45mt; MRP-L45; Precursor;)
genome : 36,453,151 - 36,479,101 (25,951)
query : 1 - 1,544 (1,544/1,561)
8 exons
identity = 0.999
5'(1.000;0.994;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
InterPro :
IPR007379 : Tim44-like domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 28, cyto 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013754)
HIX0013754
HIT000693718 (
ENST00000581817
)
(39S ribosomal protein L45, mitochondrial; L45mt; MRP-L45; Precursor;)
genome : 36,455,379 - 36,462,964 (7,586)
query : 1 - 521 (521/521)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 20, cyto 5.5, cyto_nucl 5, nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013754)
HIX0013754
HIT000691831 (
ENST00000579911
)
(39S ribosomal protein L45, mitochondrial; L45mt; MRP-L45; Precursor;)
genome : 36,462,500 - 36,478,775 (16,276)
query : 1 - 807 (807/807)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 26.5, cyto_nucl 15, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013754)
HIX0202555
HIT000696838 (
ENST00000584976
)
(Hypothetical short protein.)
genome : 36,481,413 - 36,484,386 (2,974)
query : 1 - 298 (298/298)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202555)
HIX0202555
HIT000134922 (
ENST00000342292
)
(Probable G-protein coupled receptor 179; Probable G-protein coupled receptor 158-like 1; GPR158-like; Precursor;)
genome : 36,481,493 - 36,499,693 (18,201)
query : 1 - 7,980 (7,980/7,980)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202555)
HIX0202555
HIT000255622
(
AY584611
)
Representative transcript
(Probable G-protein coupled receptor 179; Probable G-protein coupled receptor 158-like 1; GPR158-like; Precursor;)
genome : 36,481,493 - 36,499,693 (18,201)
query : 1 - 7,980 (7,980/7,980)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;0.996;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000742 : Epidermal growth factor-like domain
IPR017978 : GPCR, family 3, C-terminal
GO :
0004930 : Molecular Function : G-protein coupled receptor activity
0005515 : Molecular Function : protein binding
0007186 : Biological Process : G-protein coupled receptor signaling pathway
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202555)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK030625
Pongo
sp. (Orangutan) : ENSPPYT00000010352
Pan
sp. (Chimpanzee) : ENSPTRT00000016700
Rattus
sp. (Rat) : ENSRNOT00000055427
Macaca
sp. (Macaque) : XM_001081991
Bos
sp. (Cow) : XM_001254766
Monodelphis
sp. (Opossum) : XM_001372028
Equus
sp. (Horse) : XM_001501693
Canis
sp. (Dog) : XM_548160
HIX0202555
HIT000315866 (
NM_001004334
)
(Probable G-protein coupled receptor 179; Probable G-protein coupled receptor 158-like 1; GPR158-like; Precursor;)
genome : 36,481,493 - 36,499,693 (18,201)
query : 1 - 7,980 (7,980/7,980)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202555)
HIX0202555
HIT000682310 (
ENST00000569367
)
(Probable G-protein coupled receptor 179; Probable G-protein coupled receptor 158-like 1; GPR158-like; Precursor;)
genome : 36,481,493 - 36,499,693 (18,201)
query : 1 - 7,980 (7,980/7,980)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202555)
HIX0202555
HIT000675065 (
ENST00000561850
)
(Probable G-protein coupled receptor 179; Probable G-protein coupled receptor 158-like 1; GPR158-like; Precursor;)
genome : 36,495,007 - 36,499,730 (4,724)
query : 1 - 1,254 (1,254/1,254)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, pero 4, lyso 2, golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202555)
HIX0202555
HIT000597938 (
ENST00000494542
)
(Probable G-protein coupled receptor 179; Probable G-protein coupled receptor 158-like 1; GPR158-like; Precursor;)
genome : 36,495,218 - 36,499,730 (4,513)
query : 1 - 1,043 (1,043/1,043)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, pero 3, lyso 2, golg 2, mito_pero 2,
cyto_pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202555)
HIX0039020
pHIT000091221 ( pHIT000091221 )
(Suppressor of cytokine signaling 7.)
genome : 36,507,936 - 36,552,221 (44,286)
query : 1 - 1,647 (1,647/1,647)
8 exons
InterPro :
IPR000980 : SH2 domain
IPR001496 : SOCS protein, C-terminal
GO :
0005515 : Molecular Function : protein binding
0035556 : Biological Process : intracellular signal transduction
SOSUI :
SOLUBLE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039020)
CAGE tag :
H21BA38K2302
HIX0039020
HIT000317132 (
NM_014598
)
(Suppressor of cytokine signaling 7; SOCS-7; Nck, Ash and phospholipase C gamma-binding protein; Nck-associated protein 4; NAP-4;)
genome : 36,508,007 - 36,561,846 (53,840)
query : 1 - 7,978 (7,978/7,978)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22.5, cyto_nucl 15, cyto 6.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039020)
HIX0039020
HIT000127072 (
ENST00000331159
)
(Suppressor of cytokine signaling 7.)
genome : 36,508,111 - 36,555,901 (47,791)
query : 1 - 1,827 (1,827/1,827)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039020)
HIX0039020
HIT000679907 (
ENST00000566881
)
(Suppressor of cytokine signaling 7; SOCS-7; Nck, Ash and phospholipase C gamma-binding protein; Nck-associated protein 4; NAP-4;)
genome : 36,508,128 - 36,561,846 (53,719)
query : 1 - 7,857 (7,857/7,857)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22.5, cyto_nucl 15, cyto 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039020)
HIX0039020
HIT000689188 (
ENST00000577233
)
(Suppressor of cytokine signaling 7; SOCS-7; Nck, Ash and phospholipase C gamma-binding protein; Nck-associated protein 4; NAP-4;)
genome : 36,508,128 - 36,556,019 (47,892)
query : 1 - 2,030 (2,030/2,030)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22.5, cyto_nucl 15, cyto 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039020)
HIX0039020
HIT000388227
(
BC121030
)
(Suppressor of cytokine signaling 7.)
genome : 36,508,439 - 36,555,886 (47,448)
query : 16 - 2,061 (2,046/2,061)
9 exons
identity = 0.996
5'(0.994;1.000;1.000;1.000;1.000;1.000;0.984;
0.969;1.000)3'
coverage = 0.993
InterPro :
IPR000980 : SH2 domain
IPR028413 : Suppressor of cytokine signalling
IPR028423 : Suppressor of cytokine signalling 7
GO :
0005515 : Molecular Function : protein binding
0035556 : Biological Process : intracellular signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11.5, cyto_nucl 11.5, extr 10, cyto 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039020)
HIX0039020
HIT000696007 (
ENST00000584132
)
(Suppressor of cytokine signaling 7.)
genome : 36,508,434 - 36,555,886 (47,453)
query : 1 - 2,051 (2,051/2,051)
9 exons
identity = 0.997
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.984;
0.969;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11.5, cyto_nucl 11.5, extr 10, cyto 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039020)
HIX0039020
HIT000675832 (
ENST00000562647
)
(Suppressor of cytokine signaling 7.)
genome : 36,508,445 - 36,555,905 (47,461)
query : 1 - 2,059 (2,059/2,059)
9 exons
identity = 0.997
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.984;
0.969;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11.5, cyto_nucl 11.5, extr 10, cyto 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039020)
HIX0039020
HIT000388228
(
BC121031
)
(Suppressor of cytokine signaling 7.)
genome : 36,508,482 - 36,555,886 (47,405)
query : 5 - 1,448 (1,444/1,448)
9 exons
identity = 0.994
5'(0.984;1.000;1.000;1.000;1.000;1.000;1.000;
0.993;1.000)3'
coverage = 0.997
InterPro :
IPR000980 : SH2 domain
IPR001496 : SOCS protein, C-terminal
IPR028413 : Suppressor of cytokine signalling
IPR028423 : Suppressor of cytokine signalling 7
GO :
0005515 : Molecular Function : protein binding
0035556 : Biological Process : intracellular signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, cyto_nucl 13, cyto 9.5, extr 3, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039020)
HIX0039020
HIT000058049
(
AB005216
)
Representative transcript
(Suppressor of cytokine signaling 7.)
genome : 36,508,504 - 36,555,905 (47,402)
query : 9 - 1,547 (1,539/1,548)
10 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.987;0.993)3'
coverage = 0.994
InterPro :
IPR000980 : SH2 domain
IPR001496 : SOCS protein, C-terminal
IPR028413 : Suppressor of cytokine signalling
IPR028423 : Suppressor of cytokine signalling 7
GO :
0005515 : Molecular Function : protein binding
0035556 : Biological Process : intracellular signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25, cyto_nucl 16.5, cyto 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039020)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK147580
Danio
sp. (Zebrafish) : BC158199
Oryzias
sp. (Medaka) : EF544584
Macaca
sp. (Macaque) : ENSMMUT00000028895
Pongo
sp. (Orangutan) : ENSPPYT00000010351
Tetraodon
sp. (Tetraodon) : GSTENT00004774001
Tetraodon
sp. (Tetraodon) : GSTENT00011939001
Takifugu
sp. (Fugu) : SINFRUT00000161366
Monodelphis
sp. (Opossum) : XM_001366767
Equus
sp. (Horse) : XM_001917592
Rattus
sp. (Rat) : XM_213443
Gallus
sp. (Chicken) : XM_423895
Canis
sp. (Dog) : XM_548159
Bos
sp. (Cow) : XM_612207
Pan
sp. (Chimpanzee) : XR_024198
HIX0039020
HIT000677598 (
ENST00000564478
)
(Suppressor of cytokine signaling 7.)
genome : 36,508,503 - 36,555,886 (47,384)
query : 1 - 1,420 (1,420/1,420)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27.5, cyto_nucl 16.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039020)
HIX0039020
HIT000389961
(
BC128607
)
(Suppressor of cytokine signaling 7.)
genome : 36,508,560 - 36,555,886 (47,327)
query : 11 - 1,474 (1,464/1,474)
10 exons
identity = 0.998
5'(0.994;1.000;1.000;1.000;0.992;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 0.993
InterPro :
IPR000980 : SH2 domain
IPR001496 : SOCS protein, C-terminal
IPR028413 : Suppressor of cytokine signalling
IPR028423 : Suppressor of cytokine signalling 7
GO :
0005515 : Molecular Function : protein binding
0035556 : Biological Process : intracellular signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26.5, cyto_nucl 17, cyto 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039020)
HIX0039020
HIT000692571 (
ENST00000580660
)
(Suppressor of cytokine signaling 7.)
genome : 36,508,826 - 36,533,564 (24,739)
query : 1 - 480 (480/480)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 13.5, mito_nucl 13.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039020)
HIX0039020
HIT000680217 (
ENST00000567199
)
(Suppressor of cytokine signaling 7.)
genome : 36,508,840 - 36,533,564 (24,725)
query : 1 - 466 (466/466)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23.5, cyto_nucl 17, cyto 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039020)
HIX0039020
HIT000460165
(
DQ593634
)
(Non-protein coding transcript.)
genome : 36,522,247 - 36,522,277 (31)
query : 1 - 31 (31/31)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039020)
HIX0039020
HIT000019193
(
AK094338
)
(Conserved hypothetical protein.)
genome : 36,556,414 - 36,558,982 (2,569)
query : 1 - 2,569 (2,569/2,569)
1 exon
identity = 0.997
5'(0.997)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, mito 11, cyto 2.5, cyto_nucl 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039020)
HIX0039020
HIT000448078
(
DQ581547
)
(Non-protein coding transcript.)
genome : 36,556,554 - 36,556,583 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039020)
HIX0039020
HIT000462787
(
DQ596256
)
(Non-protein coding transcript.)
genome : 36,557,259 - 36,557,288 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039020)
HIX0039020
HIT000457506
(
DQ590975
)
(Non-protein coding transcript.)
genome : 36,557,271 - 36,557,299 (29)
query : 1 - 29 (29/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 0.967
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039020)
HIX0039020
HIT000457050
(
DQ590519
)
(Non-protein coding transcript.)
genome : 36,558,066 - 36,558,095 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039020)
HIX0039020
HIT000458626
(
DQ592095
)
(Non-protein coding transcript.)
genome : 36,559,874 - 36,559,903 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039020)
HIX0022865
HIT000529165 (
ENST00000431231
)
(Rho GTPase-activating protein 23; Rho-type GTPase-activating protein 23;)
genome : 36,584,662 - 36,668,628 (83,967)
query : 1 - 5,964 (5,964/5,964)
24 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 12, extr 6, cyto 5.5, lyso 3,
extr_plas 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022865)
HIX0022865
HIT000656553 (
NM_001199417
)
(Rho GTPase-activating protein 23; Rho-type GTPase-activating protein 23;)
genome : 36,584,720 - 36,668,628 (83,909)
query : 1 - 5,906 (5,906/5,913)
24 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.986;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 12, extr 6, cyto 5.5, lyso 3,
extr_plas 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022865)
HIX0022865
HIT000675878 (
ENST00000562697
)
(Rho GTPase-activating protein 23; Rho-type GTPase-activating protein 23;)
genome : 36,584,720 - 36,668,628 (83,909)
query : 1 - 5,929 (5,929/5,929)
25 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 11, extr 9, cyto 2.5, lyso 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022865)
HIX0022865
HIT000535602 (
ENST00000437668
)
(Rho GTPase-activating protein 23.)
genome : 36,584,730 - 36,666,372 (81,643)
query : 1 - 3,663 (3,663/3,663)
25 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 11, extr 9, cyto 2.5, lyso 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022865)
HIX0017374
HIT000007396
(
AK024122
)
Representative transcript
(Conserved hypothetical protein.)
genome : 36,601,054 - 36,603,681 (2,628)
query : 1 - 2,484 (2,484/2,484)
2 exons
identity = 0.989
3'(0.992;0.967)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 12, extr 11, cyto 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017374)
HIX0224360
HIT000674770 (
ENST00000561550
)
(Conserved hypothetical protein.)
genome : 36,606,638 - 36,608,643 (2,006)
query : 1 - 702 (702/702)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto_nucl 7.66667, nucl 7, cyto 4,
cyto_pero 3.83333, mito_nucl 3.83333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224360)
HIX0224360
HIT000680957 (
ENST00000567965
)
(Conserved hypothetical protein.)
genome : 36,606,675 - 36,608,643 (1,969)
query : 1 - 665 (665/665)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto_nucl 7.66667, nucl 7, cyto 4,
cyto_pero 3.83333, mito_nucl 3.83333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224360)
HIX0224360
HIT000694851 (
ENST00000582968
)
(Hypothetical protein.)
genome : 36,606,832 - 36,608,688 (1,857)
query : 1 - 482 (482/482)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, nucl 10, cyto_nucl 8, cyto 4, golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224360)
HIX0224360
HIT000694803 (
ENST00000582919
)
(Conserved hypothetical protein.)
genome : 36,606,870 - 36,608,190 (1,321)
query : 1 - 419 (419/419)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15, cyto_nucl 13.5, extr 8, cyto 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224360)
HIX0224360
HIT000693822 (
ENST00000581922
)
(Hypothetical short protein.)
genome : 36,607,300 - 36,607,932 (633)
query : 1 - 401 (401/401)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, nucl 10, cyto_nucl 10, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224360)
HIX0224360
HIT000694539 (
ENST00000582649
)
(Hypothetical protein.)
genome : 36,607,405 - 36,608,147 (743)
query : 1 - 643 (643/643)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, cyto_nucl 10.5, nucl 9, cyto 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224360)
HIX0224360
HIT000691558 (
ENST00000579633
)
(Hypothetical protein.)
genome : 36,607,550 - 36,608,607 (1,058)
query : 1 - 468 (468/468)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, cyto 6, cyto_nucl 6, cyto_pero 5.33333,
mito 5, nucl 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224360)
HIX0022865
HIT000694301 (
ENST00000582409
)
(Non-protein coding transcript.)
genome : 36,609,934 - 36,614,440 (4,507)
query : 1 - 546 (546/546)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022865)
HIX0022865
HIT000541312 (
ENST00000443378
)
(Rho GTPase-activating protein 23.)
genome : 36,613,644 - 36,668,628 (54,985)
query : 1 - 6,276 (6,276/6,276)
24 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22.5, cyto_nucl 16, cyto 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022865)
HIX0022865
HIT000663137 (
ENST00000549246
)
(Rho GTPase-activating protein 23.)
genome : 36,613,644 - 36,622,513 (8,870)
query : 1 - 969 (969/969)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16.1667, cyto 14.5, cyto_plas 9.66667,
extr 7, nucl 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022865)
HIX0022865
HIT000678642 (
ENST00000565569
)
(Rho GTPase-activating protein 23.)
genome : 36,613,644 - 36,622,513 (8,870)
query : 1 - 969 (969/969)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16.1667, cyto 14.5, cyto_plas 9.66667,
extr 7, nucl 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022865)
HIX0022865
HIT000001216
(
AB040934
)
Representative transcript
(Rho GTPase-activating protein 23.)
genome : 36,623,152 - 36,666,372 (43,221)
query : 1 - 2,436 (2,436/2,436)
19 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.984;
1.000;1.000;1.000;1.000;0.986;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto 6, golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022865)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK173187
Danio
sp. (Zebrafish) : ENSDART00000091298
Monodelphis
sp. (Opossum) : ENSMODT00000016021
Pongo
sp. (Orangutan) : ENSPPYT00000010350
Tetraodon
sp. (Tetraodon) : GSTENT00010815001
Takifugu
sp. (Fugu) : SINFRUT00000167366
Rattus
sp. (Rat) : XM_001081375
Macaca
sp. (Macaque) : XM_001082710
Canis
sp. (Dog) : XM_548158
Bos
sp. (Cow) : XM_601322
HIX0022865
eHIT000007735 ( ESTsASS_17_928 )
(Non-protein coding transcript.)
genome : 36,623,236 - 36,666,372 (43,137)
query : 1 - 2,329 (2,329/2,329)
18 exons
ESTs assembly
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022865)
ESTs used for assembly :
CN429248,DN831435,BE701883,BF195181
BG290249,BF940728,BG060099,BI828364
BF940321,AA478253,BM544373,BF736312
BE812946,BQ723267,BM548592,CN429247
BM544090
HIX0022865
HIT000680046_02 (
ENST00000567025
)
(Rho GTPase-activating protein 23.)
genome : 36,625,116 - 36,625,853 (738)
query : 1 - 423 (423/423)
3 exons
identity = 0.962
5'(0.967;0.941;0.989)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17.5, cyto_nucl 15.5, cyto 8.5, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022865)
HIX0022865
HIT000674983_02 (
ENST00000561767
)
(Rho GTPase-activating protein 23.)
genome : 36,625,383 - 36,656,141 (30,759)
query : 216 - 2,211 (1,996/2,211)
17 exons
identity = 0.964
5'(0.956;0.982;0.931;0.986;0.962;0.913;0.984;
0.992;0.951;0.955;0.975;0.933;0.986;0.984;
1.000;0.952;0.981)3'
coverage = 0.903
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22.5, cyto_nucl 16.5, cyto 9.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022865)
HIX0022865
HIT000675951_02 (
ENST00000562773
)
(Rho GTPase-activating protein 23.)
genome : 36,625,259 - 36,654,752 (29,494)
query : 1 - 1,937 (1,937/1,937)
15 exons
identity = 0.965
5'(0.957;0.973;0.914;0.986;0.965;0.984;0.992;
0.967;0.942;0.962;0.959;0.989;0.968;0.976;
0.952)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20.5, cyto_nucl 17.5, nucl 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022865)
HIX0022865
HIT000681193_02 (
ENST00000568208
)
(Rho GTPase-activating protein 21; Rho GTPase-activating protein 10; Rho-type GTPase-activating protein 21;)
genome : 36,625,382 - 36,655,639 (30,258)
query : 1 - 1,670 (1,670/1,670)
10 exons
identity = 0.969
5'(0.943;0.981;0.988;0.980;0.967;0.936;0.978;
0.992;0.932;0.968)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 19, nucl 9.5, E.R._mito 9.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022865)
HIX0022865
HIT000095554
(
BC039190
)
(Rho GTPase-activating protein 23.)
genome : 36,625,454 - 36,666,372 (40,919)
query : 1 - 1,946 (1,946/1,946)
18 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;0.984;1.000;
1.000;1.000;1.000;0.986;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000198 : Rho GTPase-activating protein domain
IPR001849 : Pleckstrin homology domain
IPR008936 : Rho GTPase activation protein
GO :
0005622 : Cellular Component : intracellular
0007165 : Biological Process : signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23, cyto 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022865)
HIX0022865
HIT000662346_02 (
ENST00000548333
)
(Rho GTPase-activating protein 23.)
genome : 36,625,821 - 36,638,384 (12,564)
query : 1 - 769 (769/769)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27, plas 1, cyto 1, mito 1, cysk 1, golg 1,
cyto_mito 1, cysk_plas 1, cyto_plas 1, cyto_golg 1
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022865)
HIX0022865
HIT000677799_02 (
ENST00000564689
)
(Rho GTPase-activating protein 23.)
genome : 36,625,821 - 36,638,384 (12,564)
query : 1 - 769 (769/769)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27, plas 1, cyto 1, mito 1, cysk 1, golg 1,
cyto_mito 1, cysk_plas 1, cyto_plas 1, cyto_golg 1
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022865)
HIX0022865
HIT000693683_02 (
ENST00000581782
)
(Rho GTPase-activating protein 23.)
genome : 36,628,180 - 36,638,799 (10,620)
query : 1 - 488 (488/488)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, nucl 10, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022865)
HIX0022865
HIT000681545_02 (
ENST00000568570
)
(Rho GTPase-activating protein 23.)
genome : 36,633,818 - 36,646,384 (12,567)
query : 1 - 1,072 (1,072/1,072)
8 exons
identity = 0.972
5'(0.988;0.984;0.985;0.967;0.936;0.975;0.969;
0.952)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 28.5, mito_pero 15
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022865)
HIX0022865
HIT000682105_02 (
ENST00000569157
)
(Rho GTPase-activating protein 23.)
genome : 36,633,818 - 36,638,310 (4,493)
query : 1 - 439 (439/439)
5 exons
identity = 0.986
5'(0.977;1.000;0.984;0.985;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 14, nucl 10, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022865)
HIX0022865
HIT000690604_02 (
ENST00000578665
)
(Rho GTPase-activating protein 23.)
genome : 36,638,764 - 36,646,385 (7,622)
query : 1 - 438 (438/438)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, cyto_nucl 7.5, nucl 6, cyto 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022865)
HIX0224617
HIT000677034_02 (
ENST00000563896
)
(Hypothetical protein.)
genome : 36,640,155 - 36,640,956 (802)
query : 1 - 802 (802/802)
1 exon
identity = 0.960
3'(0.960)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14, extr 12, cyto_nucl 11, cyto 6, extr_plas 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224617)
HIX0022865
HIT000662669 (
ENST00000548703
)
(Rho GTPase-activating protein 23.)
genome : 36,646,702 - 36,666,296 (19,595)
query : 1 - 408 (408/408)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 14, cyto 6.5, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022865)
HIX0022865
HIT000676144 (
ENST00000562972
)
(Rho GTPase-activating protein 23.)
genome : 36,646,702 - 36,666,296 (19,595)
query : 1 - 408 (408/408)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 14, cyto 6.5, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022865)
HIX0022865
HIT000681934_02 (
ENST00000568978
)
(Rho GTPase-activating protein 23.)
genome : 36,646,726 - 36,647,985 (1,260)
query : 1 - 405 (405/405)
2 exons
identity = 0.978
5'(0.970;0.979)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23, cyto_nucl 15, nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022865)
HIX0022865
HIT000692933_02 (
ENST00000581023
)
(Rho GTPase-activating protein 23.)
genome : 36,646,726 - 36,647,985 (1,260)
query : 1 - 405 (405/405)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 24, cyto_nucl 16.5, nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022865)
HIX0022865
HIT000661323_03 (
ENST00000547158
)
(Rho GTPase-activating protein 23.)
genome : 36,654,035 - 36,657,366 (3,332)
query : 1 - 659 (659/659)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23, cyto_nucl 17, nucl 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022865)
HIX0022865
HIT000681575_03 (
ENST00000568601
)
(Rho GTPase-activating protein 23.)
genome : 36,654,035 - 36,657,366 (3,332)
query : 1 - 659 (659/659)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23, cyto_nucl 17, nucl 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022865)
HIX0022865
HIT000695581 (
ENST00000583703
)
(Rho GTPase-activating protein 23.)
genome : 36,656,575 - 36,666,354 (9,780)
query : 1 - 471 (471/471)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, extr 8, cyto 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022865)
HIX0021064
HIT000089957
(
BC019717
)
(Hypothetical protein.)
genome : 36,686,259 - 36,687,046 (788)
query : 1 - 788 (788/816)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, cyto_nucl 6.5, nucl 5.5, cyto 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021064)
HIX0021064
HIT000109385 (
ENST00000264659
)
(SRC kinase signaling inhibitor 1.)
genome : 36,686,251 - 36,762,183 (75,933)
query : 1 - 7,058 (7,058/7,058)
19 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.984)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25, cyto_nucl 16, cyto 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021064)
HIX0021064
HIT000683714 (
ENST00000570888
)
(SRC kinase signaling inhibitor 1.)
genome : 36,686,251 - 36,762,183 (75,933)
query : 1 - 7,058 (7,058/7,058)
19 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.984)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25, cyto_nucl 16, cyto 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021064)
HIX0021064
HIT000317593 (
NM_025248
)
(SRC kinase signaling inhibitor 1.)
genome : 36,686,259 - 36,762,183 (75,925)
query : 1 - 7,050 (7,050/7,050)
19 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.984)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25, cyto_nucl 16, cyto 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021064)
HIX0021064
HIT000242432
(
AB127405
)
Representative transcript
(SRC kinase signaling inhibitor 1.)
genome : 36,687,804 - 36,762,183 (74,380)
query : 1 - 4,111 (4,111/4,127)
20 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.995;1.000;1.000;0.984)5'
coverage = 1.000
InterPro :
IPR026727 : SRC kinase signalling inhibitor 1
GO :
0030334 : Biological Process : regulation of cell migration
0034446 : Biological Process : substrate adhesion-dependent cell spreading
0061001 : Biological Process : regulation of dendritic spine morphogenesis
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25, cyto_nucl 16, cyto 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021064)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB174630
Mus
sp. (Mouse) : AF040944
Rattus
sp. (Rat) : AF156981
Equus
sp. (Horse) : ENSECAT00000015252
Gallus
sp. (Chicken) : ENSGALT00000015804
Oryzias
sp. (Medaka) : ENSORLT00000005676
Oryzias
sp. (Medaka) : ENSORLT00000017653
Pongo
sp. (Orangutan) : ENSPPYT00000010349
Takifugu
sp. (Fugu) : SINFRUT00000138186
Monodelphis
sp. (Opossum) : XM_001371807
Danio
sp. (Zebrafish) : XM_689126
Canis
sp. (Dog) : XM_845657
Bos
sp. (Cow) : XM_869703
Pan
sp. (Chimpanzee) : XR_024153
HIX0021064
HIT000001400
(
AB051471
)
(SRC kinase signaling inhibitor 1.)
genome : 36,687,824 - 36,718,135 (30,312)
query : 1 - 3,996 (3,996/3,996)
13 exons
identity = 1.000
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 16, nucl 12, cyto_nucl 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021064)
HIX0021064
HIT000690861 (
ENST00000578925
)
(SRC kinase signaling inhibitor 1.)
genome : 36,688,679 - 36,762,095 (73,417)
query : 1 - 4,644 (4,644/4,644)
20 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.975)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22.5, cyto_nucl 15.5, cyto 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021064)
HIX0021064
HIT000693223 (
ENST00000581317
)
(SRC kinase signaling inhibitor 1.)
genome : 36,688,679 - 36,762,095 (73,417)
query : 1 - 4,644 (4,644/4,644)
20 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.975)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22.5, cyto_nucl 15.5, cyto 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021064)
HIX0021064
HIT000056704
(
BX648057
)
(Conserved hypothetical protein.)
genome : 36,697,516 - 36,704,817 (7,302)
query : 2 - 2,027 (2,026/2,030)
3 exons
identity = 0.992
3'(0.991;0.993;1.000)5'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, cyto_nucl 14.5, cyto 9, extr 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021064)
HIX0021064
HIT000641752 (
ENST00000542707
)
(SRC kinase signaling inhibitor 1.)
genome : 36,697,516 - 36,719,660 (22,145)
query : 1 - 4,635 (4,635/4,635)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 16, cyto 10.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021064)
HIX0021064
HIT000687648 (
ENST00000575448
)
(SRC kinase signaling inhibitor 1.)
genome : 36,697,516 - 36,719,660 (22,145)
query : 1 - 4,635 (4,635/4,635)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 16, cyto 10.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021064)
HIX0021064
HIT000481759 (
ENST00000398579
)
(SRC kinase signaling inhibitor 1.)
genome : 36,697,519 - 36,729,067 (31,549)
query : 1 - 5,225 (5,225/5,225)
19 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25.5, cyto_nucl 17.8333, cyto 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021064)
HIX0021064
HIT000686202 (
ENST00000573779
)
(SRC kinase signaling inhibitor 1.)
genome : 36,697,519 - 36,729,067 (31,549)
query : 1 - 5,225 (5,225/5,225)
19 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25.5, cyto_nucl 17.8333, cyto 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021064)
HIX0021064
HIT000046538
(
AK126665
)
(SRC kinase signaling inhibitor 1; SNAP-25-interacting protein; SNIP; p130Cas-associated protein; p140Cap;)
genome : 36,697,519 - 36,720,232 (22,714)
query : 2 - 5,205 (5,204/5,205)
15 exons
identity = 0.999
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.994;1.000;0.977;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR026727 : SRC kinase signalling inhibitor 1
GO :
0030334 : Biological Process : regulation of cell migration
0034446 : Biological Process : substrate adhesion-dependent cell spreading
0061001 : Biological Process : regulation of dendritic spine morphogenesis
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, cyto_nucl 12, cyto 9.5, mito 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021064)
HIX0021064
HIT000689149 (
ENST00000577193
)
(SRC kinase signaling inhibitor 1; SNAP-25-interacting protein; SNIP; p130Cas-associated protein; p140Cap;)
genome : 36,697,519 - 36,720,232 (22,714)
query : 1 - 5,204 (5,204/5,204)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, cyto_nucl 12, cyto 9.5, mito 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021064)
HIX0021064
HIT000695914 (
ENST00000584038
)
(SRC kinase signaling inhibitor 1; SNAP-25-interacting protein; SNIP; p130Cas-associated protein; p140Cap;)
genome : 36,697,519 - 36,720,232 (22,714)
query : 1 - 5,204 (5,204/5,204)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, cyto_nucl 12, cyto 9.5, mito 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021064)
HIX0021064
HIT000046549
(
AK126676
)
(SRC kinase signaling inhibitor 1.)
genome : 36,697,519 - 36,719,660 (22,142)
query : 1 - 4,632 (4,632/4,632)
15 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.999;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR026727 : SRC kinase signalling inhibitor 1
GO :
0030334 : Biological Process : regulation of cell migration
0034446 : Biological Process : substrate adhesion-dependent cell spreading
0061001 : Biological Process : regulation of dendritic spine morphogenesis
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 16, cyto 10.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021064)
HIX0021064
HIT000020952
(
AK096097
)
(SRC kinase signaling inhibitor 1.)
genome : 36,697,519 - 36,707,459 (9,941)
query : 1 - 2,500 (2,500/2,500)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;0.993;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR026727 : SRC kinase signalling inhibitor 1
GO :
0030334 : Biological Process : regulation of cell migration
0034446 : Biological Process : substrate adhesion-dependent cell spreading
0061001 : Biological Process : regulation of dendritic spine morphogenesis
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 23, cyto 5, cyto_nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021064)
HIX0021064
HIT000489651
(
AK295027
)
(SRC kinase signaling inhibitor 1.)
genome : 36,699,091 - 36,729,067 (29,977)
query : 1 - 3,653 (3,653/3,653)
19 exons
identity = 0.999
3'(0.996;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.999;
1.000;1.000;0.995;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR026727 : SRC kinase signalling inhibitor 1
GO :
0030334 : Biological Process : regulation of cell migration
0034446 : Biological Process : substrate adhesion-dependent cell spreading
0061001 : Biological Process : regulation of dendritic spine morphogenesis
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto_nucl 17.3333, cyto 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021064)
HIX0021064
HIT000689912 (
ENST00000577962
)
(SRC kinase signaling inhibitor 1; SNAP-25-interacting protein; SNIP; p130Cas-associated protein; p140Cap;)
genome : 36,701,446 - 36,704,937 (3,492)
query : 1 - 517 (517/517)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24, cyto_nucl 19, cyto 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021064)
HIX0021064
HIT000696359 (
ENST00000584491
)
(SRC kinase signaling inhibitor 1; SNAP-25-interacting protein; SNIP; p130Cas-associated protein; p140Cap;)
genome : 36,701,446 - 36,704,937 (3,492)
query : 1 - 517 (517/517)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24, cyto_nucl 19, cyto 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021064)
HIX0021064
HIT000691028 (
ENST00000579093
)
(Hypothetical protein.)
genome : 36,701,503 - 36,702,956 (1,454)
query : 1 - 453 (453/453)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 27, cyto 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021064)
HIX0021064
HIT000693559 (
ENST00000581656
)
(Hypothetical protein.)
genome : 36,701,503 - 36,702,956 (1,454)
query : 1 - 453 (453/453)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 27, cyto 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021064)
HIX0021064
HIT000041848
(
BC033233
)
(SRC kinase signaling inhibitor 1.)
genome : 36,707,917 - 36,715,709 (7,793)
query : 1 - 1,314 (1,314/1,332)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR026727 : SRC kinase signalling inhibitor 1
GO :
0030334 : Biological Process : regulation of cell migration
0034446 : Biological Process : substrate adhesion-dependent cell spreading
0061001 : Biological Process : regulation of dendritic spine morphogenesis
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23, cyto_nucl 17, nucl 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021064)
HIX0021064
HIT000690106 (
ENST00000578160
)
(SRC kinase signaling inhibitor 1.)
genome : 36,707,915 - 36,715,709 (7,795)
query : 1 - 1,316 (1,316/1,316)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23, cyto_nucl 17, nucl 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021064)
HIX0021064
HIT000693608 (
ENST00000581706
)
(SRC kinase signaling inhibitor 1.)
genome : 36,707,915 - 36,715,709 (7,795)
query : 1 - 1,316 (1,316/1,316)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23, cyto_nucl 17, nucl 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021064)
HIX0021064
HIT000091711
(
BC029278
)
(SRC kinase signaling inhibitor 1; SNAP-25-interacting protein; SNIP; p130Cas-associated protein; p140Cap;)
genome : 36,718,158 - 36,760,865 (42,708)
query : 1 - 1,431 (1,431/1,431)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR022782 : Actin interacting protein 3, C-terminal
IPR026727 : SRC kinase signalling inhibitor 1
GO :
0030334 : Biological Process : regulation of cell migration
0034446 : Biological Process : substrate adhesion-dependent cell spreading
0061001 : Biological Process : regulation of dendritic spine morphogenesis
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, cyto_nucl 10.5, mito 10, cyto 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021064)
HIX0021064
HIT000692312 (
ENST00000580397
)
(SRC kinase signaling inhibitor 1; SNAP-25-interacting protein; SNIP; p130Cas-associated protein; p140Cap;)
genome : 36,718,158 - 36,760,865 (42,708)
query : 1 - 1,431 (1,431/1,431)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, cyto_nucl 10.5, mito 10, cyto 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021064)
HIX0021064
HIT000696138 (
ENST00000584266
)
(SRC kinase signaling inhibitor 1; SNAP-25-interacting protein; SNIP; p130Cas-associated protein; p140Cap;)
genome : 36,718,158 - 36,760,865 (42,708)
query : 1 - 1,431 (1,431/1,431)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, cyto_nucl 10.5, mito 10, cyto 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021064)
HIX0027250
HIT000046598
(
AK126725
)
Representative transcript
(Conserved hypothetical protein.)
genome : 36,739,824 - 36,742,991 (3,168)
query : 1 - 3,168 (3,168/3,168)
1 exon
identity = 0.998
5'(0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, nucl 14
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027250)
HIX0224947
HIT000694956 (
ENST00000583075
)
(Hypothetical protein.)
genome : 36,757,302 - 36,758,954 (1,653)
query : 1 - 571 (571/571)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, cyto_nucl 13, nucl 9.5, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224947)
HIX0039237
HIT000559730 (
NM_001130677
)
(Protein of unknown function DUF4584 family protein.)
genome : 36,827,956 - 36,831,187 (3,232)
query : 1 - 3,232 (3,232/3,232)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 16, nucl 8, E.R._mito 8
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039237)
HIX0039237
HIT000124343 (
ENST00000325814
)
(Protein of unknown function DUF4584 family protein.)
genome : 36,827,961 - 36,831,187 (3,227)
query : 1 - 3,227 (3,227/3,227)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 16, nucl 8, E.R._mito 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039237)
HIX0039237
pHIT000029048 ( pHIT000029048 )
Representative transcript
(Conserved hypothetical protein.)
genome : 36,829,609 - 36,830,748 (1,140)
query : 1 - 1,140 (1,140/1,140)
1 exon
InterPro :
IPR027971 : Protein of unknown function DUF4584
SOSUI :
SOLUBLE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039237)
CAGE tag :
H21BB69F2006
HIX0224471
HIT000693243 (
ENST00000581337
)
(Non-protein coding transcript.)
genome : 36,858,515 - 36,858,584 (70)
query : 1 - 70 (70/70)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224471)
HIX0224471
HIT000725950 (
NR_039887
)
(Non-protein coding transcript.)
genome : 36,858,515 - 36,858,584 (70)
query : 1 - 70 (70/70)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224471)
HIX0013758
HIT000017742
(
AK092875
)
Representative transcript
(Hypothetical protein.)
genome : 36,858,705 - 36,860,997 (2,293)
query : 1 - 2,293 (2,293/2,294)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, nucl 8, cyto 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013758)
HIX0013758
HIT000677035 (
ENST00000563897
)
(Hypothetical protein.)
genome : 36,858,705 - 36,861,000 (2,296)
query : 1 - 2,296 (2,296/2,296)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, nucl 8, cyto 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013758)
HIX0013758
HIT000695290 (
ENST00000583409
)
(Hypothetical short protein.)
genome : 36,859,733 - 36,862,514 (2,782)
query : 1 - 486 (486/486)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013758)
HIX0013759
HIT000261531
(
BC064612
)
(Protein AF-17.)
genome : 36,861,795 - 36,871,008 (9,214)
query : 11 - 2,723 (2,713/2,734)
9 exons
identity = 0.999
5'(0.995;1.000;1.000;1.000;0.990;1.000;1.000;
1.000;1.000)3'
coverage = 0.996
InterPro :
IPR001965 : Zinc finger, PHD-type
IPR011011 : Zinc finger, FYVE/PHD-type
IPR019786 : Zinc finger, PHD-type, conserved site
IPR019787 : Zinc finger, PHD-finger
GO :
0005515 : Molecular Function : protein binding
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto 6, extr 3, cyto_mito 3, cyto_plas 3,
cyto_golg 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013759)
HIX0013759
HIT000124310 (
ENST00000325718
)
(Protein AF-17; ALL1-fused gene from chromosome 17 protein;)
genome : 36,861,795 - 36,886,056 (24,262)
query : 1 - 7,578 (7,578/7,578)
20 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto_nucl 17, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013759)
HIX0013759
HIT000359417 (
ENST00000378137
)
(Protein AF-17.)
genome : 36,861,795 - 36,871,009 (9,215)
query : 1 - 2,714 (2,714/2,714)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto 6, extr 3, cyto_mito 3, cyto_plas 3,
cyto_golg 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013759)
HIX0013759
HIT000202585 (
NM_005937
)
(Protein AF-17; ALL1-fused gene from chromosome 17 protein;)
genome : 36,861,873 - 36,886,056 (24,184)
query : 1 - 7,500 (7,500/7,500)
20 exons
identity = 1.000
5'(0.992;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto_nucl 17, cyto 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013759)
HIX0013759
HIT000429303
(
AK310437
)
(Protein AF-17.)
genome : 36,861,873 - 36,872,588 (10,716)
query : 1 - 1,556 (1,556/1,556)
9 exons
identity = 0.999
5'(0.992;1.000;1.000;1.000;1.000;0.989;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001965 : Zinc finger, PHD-type
IPR011011 : Zinc finger, FYVE/PHD-type
IPR019786 : Zinc finger, PHD-type, conserved site
IPR019787 : Zinc finger, PHD-finger
GO :
0005515 : Molecular Function : protein binding
0008270 : Molecular Function : zinc ion binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 10, plas 6, nucl 4, E.R. 4, pero 4, mito 3,
cysk_plas 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013759)
HIX0013759
HIT000690882 (
ENST00000578946
)
(Protein AF-17; ALL1-fused gene from chromosome 17 protein;)
genome : 36,861,873 - 36,872,588 (10,716)
query : 1 - 1,556 (1,556/1,556)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 10, plas 6, nucl 4, E.R. 4, pero 4, mito 3,
cysk_plas 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013759)
HIX0013759
HIT000429301
(
AK310435
)
(Protein AF-17.)
genome : 36,861,873 - 36,872,396 (10,524)
query : 1 - 1,364 (1,364/1,364)
9 exons
identity = 0.999
5'(0.992;1.000;1.000;1.000;1.000;0.989;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001965 : Zinc finger, PHD-type
IPR011011 : Zinc finger, FYVE/PHD-type
IPR019786 : Zinc finger, PHD-type, conserved site
IPR019787 : Zinc finger, PHD-finger
GO :
0005515 : Molecular Function : protein binding
0008270 : Molecular Function : zinc ion binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 10, plas 6, nucl 4, E.R. 4, pero 4, mito 3,
cysk_plas 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013759)
HIX0013759
HIT000217812
(
U07932
)
(Protein AF-17; ALL1-fused gene from chromosome 17 protein;)
genome : 36,861,886 - 36,881,851 (19,966)
query : 1 - 3,282 (3,282/3,282)
20 exons
identity = 0.998
5'(0.991;1.000;1.000;1.000;0.981;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.989;1.000;1.000;0.997;1.000)3'
coverage = 1.000
InterPro :
IPR001965 : Zinc finger, PHD-type
IPR011011 : Zinc finger, FYVE/PHD-type
IPR019786 : Zinc finger, PHD-type, conserved site
IPR019787 : Zinc finger, PHD-finger
GO :
0005515 : Molecular Function : protein binding
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto_nucl 17, cyto 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013759)
HIX0013759
HIT000329568
(
AB209633
)
Representative transcript
(Protein AF-17.)
genome : 36,861,898 - 36,884,052 (22,155)
query : 1 - 5,471 (5,471/5,471)
20 exons
identity = 1.000
5'(0.990;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.995;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001965 : Zinc finger, PHD-type
IPR011011 : Zinc finger, FYVE/PHD-type
IPR019786 : Zinc finger, PHD-type, conserved site
IPR019787 : Zinc finger, PHD-finger
GO :
0005515 : Molecular Function : protein binding
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, cyto_nucl 17, cyto 12
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013759)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AY050217
Gallus
sp. (Chicken) : BX929825
Canis
sp. (Dog) : ENSCAFT00000026287
Equus
sp. (Horse) : ENSECAT00000012862
Oryzias
sp. (Medaka) : ENSORLT00000003372
Pongo
sp. (Orangutan) : ENSPPYT00000009941
Tetraodon
sp. (Tetraodon) : GSTENT00026398001
Takifugu
sp. (Fugu) : SINFRUT00000132894
Rattus
sp. (Rat) : XM_001081378
Macaca
sp. (Macaque) : XM_001083126
Monodelphis
sp. (Opossum) : XM_001371746
Pan
sp. (Chimpanzee) : XM_511438
Bos
sp. (Cow) : XM_581390
HIX0013759
HIT000691110 (
ENST00000579179
)
(Protein AF-17.)
genome : 36,862,892 - 36,864,052 (1,161)
query : 1 - 483 (483/483)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto_nucl 9.5, cyto 8, extr_plas 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013759)
HIX0013759
HIT000569402 (
ENST00000464666
)
(Protein AF-17.)
genome : 36,863,204 - 36,864,538 (1,335)
query : 1 - 657 (657/657)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, cyto 6, nucl 2, mito 2, mito_nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013759)
HIX0013759
HIT000571620 (
ENST00000466997
)
(Protein AF-17.)
genome : 36,865,333 - 36,871,930 (6,598)
query : 1 - 624 (624/624)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, mito_nucl 12.6667, cyto_nucl 9.33333,
mito 8.5, extr 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013759)
HIX0224834
HIT000691427 (
ENST00000579499
)
(Conserved hypothetical protein.)
genome : 36,871,581 - 36,876,525 (4,945)
query : 1 - 563 (563/563)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, nucl 8, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224834)
HIX0013759
HIT000033089
(
BC007237
)
(Protein AF-17.)
genome : 36,871,901 - 36,883,439 (11,539)
query : 1 - 3,833 (3,833/3,850)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, cyto_nucl 17, cyto 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013759)
HIX0013759
HIT000033496
(
BC007859
)
(Protein AF-17.)
genome : 36,873,677 - 36,877,408 (3,732)
query : 8 - 1,214 (1,207/1,232)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.994
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 22, nucl 3.5, cyto_nucl 2.5, extr 2, pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013759)
HIX0013759
HIT000575640 (
ENST00000471200
)
(Protein AF-17.)
genome : 36,873,677 - 36,877,409 (3,733)
query : 1 - 1,208 (1,208/1,208)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 22, nucl 3.5, cyto_nucl 2.5, extr 2, pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013759)
HIX0013759
HIT000531825 (
ENST00000433891
)
(Conserved hypothetical protein.)
genome : 36,873,763 - 36,874,520 (758)
query : 1 - 527 (527/527)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 11.5, cyto_mito 9.16667, cyto_nucl 8, nucl 7.5,
extr 5, cyto 5, cyto_pero 4.83333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013759)
HIX0013759
HIT000010407
(
AK027133
)
(Protein AF-17.)
genome : 36,874,134 - 36,883,441 (9,308)
query : 1 - 2,961 (2,961/2,989)
10 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.997;0.997;0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23, cyto_nucl 15, cyto 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013759)
HIX0013759
HIT000025126
(
AL133659
)
(Protein AF-17.)
genome : 36,874,836 - 36,883,441 (8,606)
query : 1 - 3,864 (3,864/3,895)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24, cyto 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013759)
HIX0013759
HIT000597973 (
ENST00000494578
)
(Protein AF-17.)
genome : 36,874,836 - 36,883,445 (8,610)
query : 1 - 3,868 (3,868/3,868)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24, cyto 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013759)
HIX0224413
HIT000689897 (
ENST00000577947
)
(Non-protein coding transcript.)
genome : 36,875,944 - 36,876,001 (58)
query : 1 - 58 (58/58)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224413)
HIX0224413
HIT000725942 (
NR_039879
)
(Non-protein coding transcript.)
genome : 36,875,944 - 36,876,001 (58)
query : 1 - 58 (58/58)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224413)
HIX0013759
HIT000056945
(
BX648298
)
(Protein AF-17.)
genome : 36,880,509 - 36,883,441 (2,933)
query : 1 - 2,936 (2,936/3,012)
1 exon
identity = 0.998
5'(0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14, cyto_nucl 12.5, cyto 9, extr 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013759)
HIX0013759
HIT000588121 (
ENST00000484263
)
(Protein AF-17.)
genome : 36,880,509 - 36,883,445 (2,937)
query : 1 - 2,937 (2,937/2,937)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 14, cyto 9.5, mito_nucl 9.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013759)
HIX0013759
HIT000694718_02 (
ENST00000582830
)
(Non-protein coding transcript.)
genome : 36,882,010 - 36,883,424 (1,415)
query : 1 - 395 (395/395)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013759)
HIX0013759
HIT000066140
(
AF075118
)
(Hypothetical short protein.)
genome : 36,882,816 - 36,883,437 (622)
query : 1 - 620 (620/620)
1 exon
identity = 0.997
5'(0.997)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto 11, nucl 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013759)
HIX0013759
HIT000027393
(
AL832481
)
(Conserved hypothetical protein.)
genome : 36,883,496 - 36,886,032 (2,537)
query : 1 - 2,486 (2,486/2,506)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 9, mito 9, cyto_nucl 8.83333, cyto 7, nucl 5.5,
cyto_pero 5.16667
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013759)
HIX0013760
HIT000017760
(
AK092893
)
Representative transcript
(Conserved hypothetical protein.)
genome : 36,883,630 - 36,886,052 (2,423)
query : 1 - 2,422 (2,422/2,422)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 27, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013760)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : ENSMMUT00000003755
Pongo
sp. (Orangutan) : ENSPPYT00000009940
Pan
sp. (Chimpanzee) : ENSPTRT00000020782
HIX0013760
HIT000254799
(
AY459295
)
(Conserved hypothetical protein.)
genome : 36,884,086 - 36,884,451 (366)
query : 1 - 366 (366/366)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 25, nucl 5, cyto_nucl 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013760)
HIX0013760
HIT000707170 (
ENST00000595377
)
(Conserved hypothetical protein.)
genome : 36,884,086 - 36,884,451 (366)
query : 1 - 366 (366/366)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 25, nucl 5, cyto_nucl 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013760)
HIX0013760
HIT000013672
(
AK057058
)
(Conserved hypothetical protein.)
genome : 36,884,228 - 36,886,048 (1,821)
query : 8 - 1,828 (1,821/1,828)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 0.996
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24, nucl 4.5, cyto_nucl 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013760)
HIX0202460
HIT000537594 (
ENST00000439660
)
(CDGSH iron-sulfur domain-containing protein 3, mitochondrial; MitoNEET-related protein 2; Miner2; Precursor;)
genome : 36,886,488 - 36,891,274 (4,787)
query : 1 - 2,074 (2,074/2,074)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17, extr 15
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202460)
HIX0202460
HIT000560386 (
NM_001136498
)
(CDGSH iron-sulfur domain-containing protein 3, mitochondrial; MitoNEET-related protein 2; Miner2; Precursor;)
genome : 36,886,510 - 36,891,858 (5,349)
query : 1 - 2,636 (2,636/2,636)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17, extr 15
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202460)
HIX0202460
HIT000021902
(
AK097047
)
Representative transcript
(CDGSH iron-sulfur domain-containing protein 3, mitochondrial precursor.)
genome : 36,886,612 - 36,891,297 (4,686)
query : 1 - 2,326 (2,326/2,327)
3 exons
identity = 1.000
5'(1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR006622 : Iron sulphur-containing domain, CDGSH-type, subfamily
IPR018967 : Iron sulphur-containing domain, CDGSH-type
GO :
0043231 : Cellular Component : intracellular membrane-bounded organelle
0051537 : Molecular Function : 2 iron, 2 sulfur cluster binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202460)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : BC056217
Tetraodon
sp. (Tetraodon) : CR718137
Oryzias
sp. (Medaka) : ENSORLT00000003379
Rattus
sp. (Rat) : ENSRNOT00000055405
Takifugu
sp. (Fugu) : SINFRUT00000132895
Monodelphis
sp. (Opossum) : XM_001371688
Equus
sp. (Horse) : XM_001917581
Canis
sp. (Dog) : XM_548156
Bos
sp. (Cow) : XM_870684
HIX0202460
HIT000690514 (
ENST00000578573
)
(CDGSH iron-sulfur domain-containing protein 3, mitochondrial precursor.)
genome : 36,886,612 - 36,891,297 (4,686)
query : 1 - 2,326 (2,326/2,326)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202460)
HIX0202460
HIT000260296
(
BC062294
)
(CDGSH iron-sulfur domain-containing protein 3, mitochondrial precursor.)
genome : 36,886,762 - 36,889,945 (3,184)
query : 1 - 824 (824/843)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR006622 : Iron sulphur-containing domain, CDGSH-type, subfamily
IPR018967 : Iron sulphur-containing domain, CDGSH-type
GO :
0043231 : Cellular Component : intracellular membrane-bounded organelle
0051537 : Molecular Function : 2 iron, 2 sulfur cluster binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202460)
HIX0202460
HIT000693570 (
ENST00000581668
)
(CDGSH iron-sulfur domain-containing protein 3, mitochondrial; Melanoma nuclear protein 13; Precursor;)
genome : 36,887,360 - 36,889,968 (2,609)
query : 1 - 773 (773/773)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, mito 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202460)
HIX0202460
HIT000023263
(
AK098433
)
(CDGSH iron-sulfur domain-containing protein 3, mitochondrial precursor.)
genome : 36,887,606 - 36,890,780 (3,175)
query : 1 - 1,339 (1,339/1,339)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
InterPro :
IPR006622 : Iron sulphur-containing domain, CDGSH-type, subfamily
IPR018967 : Iron sulphur-containing domain, CDGSH-type
GO :
0043231 : Cellular Component : intracellular membrane-bounded organelle
0051537 : Molecular Function : 2 iron, 2 sulfur cluster binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, cyto 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202460)
HIX0013762
HIT000203661 (
NM_007144
)
(Polycomb group RING finger protein 2; DNA-binding protein Mel-18; RING finger protein 110; Zinc finger protein 144;)
genome : 36,890,150 - 36,904,558 (14,409)
query : 1 - 2,604 (2,604/2,622)
11 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;0.965;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31.5, cyto_nucl 16.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013762)
HIX0013762
HIT000314117 (
ENST00000360797
)
(Polycomb group RING finger protein 2; DNA-binding protein Mel-18; RING finger protein 110; Zinc finger protein 144;)
genome : 36,890,150 - 36,904,558 (14,409)
query : 1 - 2,604 (2,604/2,604)
11 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;0.965;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31.5, cyto_nucl 16.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013762)
HIX0013762
HIT000692740 (
ENST00000580830
)
(Polycomb group RING finger protein 2; DNA-binding protein Mel-18; RING finger protein 110; Zinc finger protein 144;)
genome : 36,890,151 - 36,906,070 (15,920)
query : 1 - 3,062 (3,062/3,062)
12 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;0.965;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31.5, cyto_nucl 16.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013762)
HIX0013762
HIT000690429 (
ENST00000578487
)
(Polycomb group RING finger protein 2; DNA-binding protein Mel-18; RING finger protein 110; Zinc finger protein 144;)
genome : 36,890,153 - 36,891,849 (1,697)
query : 1 - 459 (459/459)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 25, nucl 2.5, cyto_nucl 2, golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013762)
HIX0013762
HIT000100527
(
D13969
)
(Polycomb group RING finger protein 2; DNA-binding protein Mel-18; RING finger protein 110; Zinc finger protein 144;)
genome : 36,890,533 - 36,902,881 (12,349)
query : 1 - 2,180 (2,180/2,227)
10 exons
identity = 0.995
3'(0.997;1.000;1.000;0.982;0.965;1.000;1.000;
1.000;0.993;1.000)5'
coverage = 0.979
InterPro :
IPR017907 : Zinc finger, RING-type, conserved site
IPR018957 : Zinc finger, C3HC4 RING-type
GO :
0046872 : Molecular Function : metal ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31.5, cyto_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013762)
HIX0013762
HIT000693251 (
ENST00000581345
)
(Polycomb group RING finger protein 2; DNA-binding protein Mel-18; RING finger protein 110; Zinc finger protein 144;)
genome : 36,890,533 - 36,902,881 (12,349)
query : 1 - 2,179 (2,179/2,179)
10 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;0.965;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31.5, cyto_nucl 16.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013762)
HIX0013762
HIT000056076
(
BX647429
)
Representative transcript
(Polycomb group RING finger protein 2; DNA-binding protein Mel-18; RING finger protein 110; Zinc finger protein 144;)
genome : 36,891,327 - 36,906,070 (14,744)
query : 1 - 1,886 (1,886/2,035)
12 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;0.965;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR017907 : Zinc finger, RING-type, conserved site
IPR018957 : Zinc finger, C3HC4 RING-type
GO :
0046872 : Molecular Function : metal ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31.5, cyto_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013762)
Ortholog candidate ( ->
Evola
)
Danio
sp. (Zebrafish) : BC053151
Mus
sp. (Mouse) : D90085
Equus
sp. (Horse) : ENSECAT00000007854
Gallus
sp. (Chicken) : ENSGALT00000040184
Oryzias
sp. (Medaka) : ENSORLT00000003434
Pongo
sp. (Orangutan) : ENSPPYT00000009939
Tetraodon
sp. (Tetraodon) : GSTENT00026396001
Takifugu
sp. (Fugu) : SINFRUT00000132896
Rattus
sp. (Rat) : XM_001081335
Macaca
sp. (Macaque) : XM_001083817
Monodelphis
sp. (Opossum) : XM_001366707
Canis
sp. (Dog) : XM_548155
Bos
sp. (Cow) : XM_869372
HIX0013762
HIT000032037
(
BC004858
)
(Polycomb group RING finger protein 2; DNA-binding protein Mel-18; RING finger protein 110; Zinc finger protein 144;)
genome : 36,891,313 - 36,896,669 (5,357)
query : 1 - 1,212 (1,212/1,229)
9 exons
identity = 0.997
3'(1.000;1.000;1.000;1.000;0.965;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
InterPro :
IPR017907 : Zinc finger, RING-type, conserved site
IPR018957 : Zinc finger, C3HC4 RING-type
GO :
0046872 : Molecular Function : metal ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31.5, cyto_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013762)
HIX0013762
HIT000691803 (
ENST00000579882
)
(Polycomb group RING finger protein 2; DNA-binding protein Mel-18; RING finger protein 110; Zinc finger protein 144;)
genome : 36,891,297 - 36,904,631 (13,335)
query : 1 - 1,534 (1,534/1,534)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29, cyto_nucl 16
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013762)
HIX0013762
HIT000039790
(
BC024255
)
(Polycomb group RING finger protein 2; DNA-binding protein Mel-18; RING finger protein 110; Zinc finger protein 144;)
genome : 36,891,327 - 36,904,554 (13,228)
query : 1 - 1,423 (1,423/1,453)
11 exons
identity = 0.997
3'(1.000;1.000;1.000;1.000;0.965;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR017907 : Zinc finger, RING-type, conserved site
IPR018957 : Zinc finger, C3HC4 RING-type
GO :
0046872 : Molecular Function : metal ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31.5, cyto_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013762)
HIX0013762
HIT000696958 (
ENST00000585100
)
(Polycomb group RING finger protein 2; DNA-binding protein Mel-18; RING finger protein 110; Zinc finger protein 144;)
genome : 36,891,362 - 36,904,437 (13,076)
query : 1 - 1,499 (1,499/1,499)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29, cyto_nucl 16
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013762)
HIX0013762
HIT000690055 (
ENST00000578109
)
(Polycomb group RING finger protein 2; DNA-binding protein Mel-18; RING finger protein 110; Zinc finger protein 144;)
genome : 36,891,365 - 36,904,606 (13,242)
query : 1 - 1,196 (1,196/1,196)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14.5, cyto_nucl 11.5, extr 9, cyto 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013762)
HIX0013763
pHIT000029059 ( pHIT000029059 )
(Proteasome subunit beta type-3; EC=3.4.25.1; Proteasome chain 13; Proteasome component C10-II; Proteasome theta chain;)
genome : 36,904,012 - 36,920,420 (16,409)
query : 1 - 774 (774/774)
6 exons
EC number :
EC 3.4.25.1
InterPro :
IPR001353 : Proteasome, subunit alpha/beta
IPR016050 : Proteasome beta-type subunit, conserved site
IPR023333 : Proteasome B-type subunit
IPR029055 : Nucleophile aminohydrolases, N-terminal
GO :
0004175 : Molecular Function : endopeptidase activity
0004298 : Molecular Function : threonine-type endopeptidase activity
0005839 : Cellular Component : proteasome core complex
0051603 : Biological Process : proteolysis involved in cellular protein catabolic process
SOSUI :
SOLUBLE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013763)
CAGE tag :
H08BA08M1506
HIX0013763
pHIT000029064 ( pHIT000029064 )
(Proteasome subunit beta type-3; EC=3.4.25.1; Proteasome chain 13; Proteasome component C10-II; Proteasome theta chain;)
genome : 36,904,012 - 36,920,420 (16,409)
query : 1 - 1,068 (1,068/1,068)
6 exons
EC number :
EC 3.4.25.1
InterPro :
IPR001353 : Proteasome, subunit alpha/beta
IPR016050 : Proteasome beta-type subunit, conserved site
IPR023333 : Proteasome B-type subunit
IPR029055 : Nucleophile aminohydrolases, N-terminal
GO :
0004175 : Molecular Function : endopeptidase activity
0004298 : Molecular Function : threonine-type endopeptidase activity
0005839 : Cellular Component : proteasome core complex
0051603 : Biological Process : proteolysis involved in cellular protein catabolic process
SOSUI :
SOLUBLE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013763)
CAGE tag :
H08BA12L1303
HIX0224326
HIT000488900
(
AK294276
)
Representative transcript
(Conserved hypothetical protein.)
genome : 36,905,613 - 36,906,969 (1,357)
query : 1 - 1,357 (1,357/1,357)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, cyto_nucl 13.5, extr 7, cyto 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224326)
HIX0224326
HIT000638068 (
ENST00000539023
)
(Conserved hypothetical protein.)
genome : 36,905,613 - 36,906,969 (1,357)
query : 1 - 1,357 (1,357/1,357)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, cyto_nucl 13.5, extr 7, cyto 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224326)
HIX0013763
HIT000103890 (
ENST00000225426
)
(Proteasome subunit beta type-3; EC=3.4.25.1; Proteasome chain 13; Proteasome component C10-II; Proteasome theta chain;)
genome : 36,908,989 - 36,920,484 (11,496)
query : 1 - 773 (773/773)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.4.25.1
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 22, cyto_nucl 14.5, extr 3, nucl 3, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013763)
HIX0013763
HIT000691023 (
ENST00000579088
)
(Proteasome subunit beta type-3; EC=3.4.25.1; Proteasome chain 13; Proteasome component C10-II; Proteasome theta chain;)
genome : 36,909,000 - 36,916,833 (7,834)
query : 1 - 510 (510/510)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.4.25.1
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, cyto_nucl 13.5, extr 8, nucl 4, extr_plas 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013763)
HIX0013763
HIT000199670 (
NM_002795
)
(Proteasome subunit beta type-3; EC=3.4.25.1; Proteasome chain 13; Proteasome component C10-II; Proteasome theta chain;)
genome : 36,909,002 - 36,920,478 (11,477)
query : 1 - 754 (754/784)
6 exons
identity = 0.999
5'(0.988;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.4.25.1
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 22, cyto_nucl 14.5, extr 3, nucl 3, mito 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013763)
HIX0013763
HIT000036078
(
BC013008
)
Representative transcript
(Proteasome subunit beta type-3; EC=3.4.25.1; Proteasome chain 13; Proteasome component C10-II; Proteasome theta chain;)
genome : 36,909,003 - 36,920,478 (11,476)
query : 1 - 753 (753/783)
6 exons
identity = 0.999
5'(0.988;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.991
EC number :
EC 3.4.25.1
InterPro :
IPR001353 : Proteasome, subunit alpha/beta
IPR016050 : Proteasome beta-type subunit, conserved site
IPR023333 : Proteasome B-type subunit
IPR029055 : Nucleophile aminohydrolases, N-terminal
GO :
0004175 : Molecular Function : endopeptidase activity
0004298 : Molecular Function : threonine-type endopeptidase activity
0005839 : Cellular Component : proteasome core complex
0051603 : Biological Process : proteolysis involved in cellular protein catabolic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 22, cyto_nucl 14.5, extr 3, nucl 3, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013763)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK153162
Danio
sp. (Zebrafish) : BC049010
Bos
sp. (Cow) : BC151435
Gallus
sp. (Chicken) : BX930671
Rattus
sp. (Rat) : D21800
Canis
sp. (Dog) : ENSCAFT00000026270
Pongo
sp. (Orangutan) : ENSPPYT00000009938
Tetraodon
sp. (Tetraodon) : GSTENT00026394001
Takifugu
sp. (Fugu) : SINFRUT00000132901
Macaca
sp. (Macaque) : XM_001084269
Monodelphis
sp. (Opossum) : XM_001371596
Equus
sp. (Horse) : XM_001501568
Pan
sp. (Chimpanzee) : XM_511441
HIX0013763
HIT000696528 (
ENST00000584662
)
(Proteasome subunit beta type-3; EC=3.4.25.1; Proteasome chain 13; Proteasome component C10-II; Proteasome theta chain;)
genome : 36,909,017 - 36,920,478 (11,462)
query : 1 - 662 (662/662)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.4.25.1
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 26, cyto_nucl 17, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013763)
HIX0013763
HIT000691653 (
ENST00000579729
)
(Proteasome subunit beta type-3; EC=3.4.25.1; Proteasome chain 13; Proteasome component C10-II; Proteasome theta chain;)
genome : 36,909,026 - 36,920,478 (11,453)
query : 1 - 552 (552/552)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.4.25.1
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21, cyto_nucl 14.5, extr 5, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013763)
HIX0013763
HIT000101162
(
D26598
)
(Proteasome subunit beta type-3; EC=3.4.25.1; Proteasome chain 13; Proteasome component C10-II; Proteasome theta chain;)
genome : 36,909,402 - 36,920,477 (11,076)
query : 20 - 692 (673/692)
5 exons
identity = 0.999
5'(0.995;1.000;1.000;1.000;1.000)3'
coverage = 0.973
EC number :
EC 3.4.25.1
InterPro :
IPR001353 : Proteasome, subunit alpha/beta
IPR016050 : Proteasome beta-type subunit, conserved site
IPR023333 : Proteasome B-type subunit
IPR029055 : Nucleophile aminohydrolases, N-terminal
GO :
0004175 : Molecular Function : endopeptidase activity
0004298 : Molecular Function : threonine-type endopeptidase activity
0005839 : Cellular Component : proteasome core complex
0051603 : Biological Process : proteolysis involved in cellular protein catabolic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 22, cyto_nucl 14.5, extr 3, nucl 3, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013763)
HIX0013763
HIT000693294 (
ENST00000581388
)
(Proteasome subunit beta type-3; EC=3.4.25.1; Proteasome chain 13; Proteasome component C10-II; Proteasome theta chain;)
genome : 36,916,638 - 36,920,478 (3,841)
query : 1 - 426 (426/426)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.4.25.1
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, cyto 6, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013763)
HIX0013763
HIT000695751 (
ENST00000583873
)
(Proteasome subunit beta type-3; EC=3.4.25.1; Proteasome chain 13; Proteasome component C10-II; Proteasome theta chain;)
genome : 36,918,304 - 36,920,478 (2,175)
query : 1 - 562 (562/562)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.4.25.1
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13.5, cyto 12, nucl 9, extr 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013763)
HIX0013764
HIT000335159
(
BC094858
)
(Hypothetical short protein.)
genome : 36,921,944 - 36,923,431 (1,488)
query : 1 - 1,488 (1,488/1,506)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, mito 10
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013764)
HIX0013764
HIT000265120
(
BC073896
)
(Hypothetical short protein.)
genome : 36,921,944 - 36,923,390 (1,447)
query : 1 - 1,447 (1,447/1,462)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, mito 10
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013764)
HIX0013764
HIT000110471 (
ENST00000269554
)
(Phosphatidylinositol 5-phosphate 4-kinase type-2 beta; EC=2.7.1.149; 1-phosphatidylinositol 5-phosphate 4-kinase 2-beta; Diphosphoinositide kinase 2-beta; Phosphatidylinositol 5-phosphate 4-kinase type II beta; PI(5)P 4-kinase type II beta; PIP4KII-beta; PtdIns(5)P-4-kinase isoform 2-beta;)
genome : 36,921,942 - 36,956,158 (34,217)
query : 1 - 5,734 (5,734/5,734)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.7.1.149
KEGG pathway :
00562 : Inositol phosphate metabolism (39)
04070 : Phosphatidylinositol signaling system (23)
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24.5, mito_pero 13, nucl 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013764)
HIX0013764
HIT000200377 (
NM_003559
)
(Phosphatidylinositol 5-phosphate 4-kinase type-2 beta; EC=2.7.1.149; 1-phosphatidylinositol 5-phosphate 4-kinase 2-beta; Diphosphoinositide kinase 2-beta; Phosphatidylinositol 5-phosphate 4-kinase type II beta; PI(5)P 4-kinase type II beta; PIP4KII-beta; PtdIns(5)P-4-kinase isoform 2-beta;)
genome : 36,921,944 - 36,956,158 (34,215)
query : 1 - 5,732 (5,732/5,732)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.7.1.149
KEGG pathway :
00562 : Inositol phosphate metabolism (39)
04070 : Phosphatidylinositol signaling system (23)
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24.5, mito_pero 13, nucl 5.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013764)
HIX0013764
HIT000221928
(
U85245
)
Representative transcript
(Phosphatidylinositol 5-phosphate 4-kinase type-2 beta; EC=2.7.1.149; 1-phosphatidylinositol 5-phosphate 4-kinase 2-beta; Diphosphoinositide kinase 2-beta; Phosphatidylinositol 5-phosphate 4-kinase type II beta; PI(5)P 4-kinase type II beta; PIP4KII-beta; PtdIns(5)P-4-kinase isoform 2-beta;)
genome : 36,923,936 - 36,956,158 (32,223)
query : 1 - 3,735 (3,735/3,743)
10 exons
identity = 0.993
3'(0.989;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.998)5'
coverage = 0.998
EC number :
EC 2.7.1.68
,
EC 2.7.1.149
KEGG pathway :
00562 : Inositol phosphate metabolism (39)
01100 : Metabolic pathways (1346)
04070 : Phosphatidylinositol signaling system (23)
InterPro :
IPR002498 : Phosphatidylinositol-4-phosphate 5-kinase, core
IPR016034 : Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup
IPR023610 : Phosphatidylinositol-4-phosphate 5-kinase
IPR027483 : Phosphatidylinositol-4-phosphate 5-kinase, C-terminal
IPR027484 : Phosphatidylinositol-4-phosphate 5-kinase, N-terminal domain
GO :
0016307 : Molecular Function : phosphatidylinositol phosphate kinase activity
0046488 : Biological Process : phosphatidylinositol metabolic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24.5, mito_pero 13, nucl 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013764)
Ortholog candidate ( ->
Evola
)
Rattus
sp. (Rat) : AF033355
Mus
sp. (Mouse) : AK170392
Macaca
sp. (Macaque) : DQ147964
Gallus
sp. (Chicken) : ENSGALT00000002452
Monodelphis
sp. (Opossum) : ENSMODT00000016084
Oryzias
sp. (Medaka) : ENSORLT00000020817
Pongo
sp. (Orangutan) : ENSPPYT00000009937
Danio
sp. (Zebrafish) : NM_001128702
Takifugu
sp. (Fugu) : SINFRUT00000132899
Pan
sp. (Chimpanzee) : XM_001172830
Equus
sp. (Horse) : XM_001501544
Canis
sp. (Dog) : XM_548154
Bos
sp. (Cow) : XM_585665
HIX0013764
HIT000426035
(
AK307169
)
(Hypothetical protein.)
genome : 36,924,254 - 36,925,693 (1,440)
query : 1 - 1,440 (1,440/1,440)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 28, plas 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013764)
HIX0212420
HIT000444478
(
DQ577947
)
Representative transcript
(Non-protein coding transcript.)
genome : 36,924,863 - 36,924,893 (31)
query : 1 - 31 (31/31)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0212420)
HIX0013764
HIT000266575
(
BT019614
)
(Phosphatidylinositol 5-phosphate 4-kinase type-2 beta; EC=2.7.1.149; 1-phosphatidylinositol 5-phosphate 4-kinase 2-beta; Diphosphoinositide kinase 2-beta; Phosphatidylinositol 5-phosphate 4-kinase type II beta; PI(5)P 4-kinase type II beta; PIP4KII-beta; PtdIns(5)P-4-kinase isoform 2-beta;)
genome : 36,925,944 - 36,955,677 (29,734)
query : 1 - 1,251 (1,251/1,251)
10 exons
identity = 0.999
3'(1.000;1.000;1.000;0.991;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.7.1.149
KEGG pathway :
00562 : Inositol phosphate metabolism (39)
04070 : Phosphatidylinositol signaling system (23)
InterPro :
IPR002498 : Phosphatidylinositol-4-phosphate 5-kinase, core
IPR016034 : Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup
IPR023610 : Phosphatidylinositol-4-phosphate 5-kinase
IPR027483 : Phosphatidylinositol-4-phosphate 5-kinase, C-terminal
IPR027484 : Phosphatidylinositol-4-phosphate 5-kinase, N-terminal domain
GO :
0016307 : Molecular Function : phosphatidylinositol phosphate kinase activity
0046488 : Biological Process : phosphatidylinositol metabolic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24.5, mito_pero 13, nucl 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013764)
HIX0013764
HIT000695159 (
ENST00000583278
)
(Phosphatidylinositol 5-phosphate 4-kinase type-2 beta; EC=2.7.1.149; 1-phosphatidylinositol 5-phosphate 4-kinase 2-beta; Diphosphoinositide kinase 2-beta; Phosphatidylinositol 5-phosphate 4-kinase type II beta; PI(5)P 4-kinase type II beta; PIP4KII-beta; PtdIns(5)P-4-kinase isoform 2-beta;)
genome : 36,927,427 - 36,936,183 (8,757)
query : 1 - 478 (478/478)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.7.1.149
KEGG pathway :
00562 : Inositol phosphate metabolism (39)
04070 : Phosphatidylinositol signaling system (23)
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 21, mito 4.5, E.R._mito 3.5, pero 2.5,
cyto_pero 2.5, cyto 1.5, E.R. 1.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013764)
HIX0013764
HIT000040260
(
BC027459
)
(Phosphatidylinositol 5-phosphate 4-kinase type-2 beta; EC=2.7.1.149; 1-phosphatidylinositol 5-phosphate 4-kinase 2-beta; Diphosphoinositide kinase 2-beta; Phosphatidylinositol 5-phosphate 4-kinase type II beta; PI(5)P 4-kinase type II beta; PIP4KII-beta; PtdIns(5)P-4-kinase isoform 2-beta;)
genome : 36,932,246 - 36,955,775 (23,530)
query : 1 - 1,019 (1,019/1,103)
9 exons
identity = 0.998
3'(1.000;0.929;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.7.1.149
KEGG pathway :
00562 : Inositol phosphate metabolism (39)
04070 : Phosphatidylinositol signaling system (23)
InterPro :
IPR002498 : Phosphatidylinositol-4-phosphate 5-kinase, core
IPR023610 : Phosphatidylinositol-4-phosphate 5-kinase
IPR027483 : Phosphatidylinositol-4-phosphate 5-kinase, C-terminal
IPR027484 : Phosphatidylinositol-4-phosphate 5-kinase, N-terminal domain
GO :
0016307 : Molecular Function : phosphatidylinositol phosphate kinase activity
0046488 : Biological Process : phosphatidylinositol metabolic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013764)
HIX0013764
HIT000119080 (
ENST00000311500
)
(Phosphatidylinositol 5-phosphate 4-kinase type-2 beta; EC=2.7.1.149; 1-phosphatidylinositol 5-phosphate 4-kinase 2-beta; Diphosphoinositide kinase 2-beta; Phosphatidylinositol 5-phosphate 4-kinase type II beta; PI(5)P 4-kinase type II beta; PIP4KII-beta; PtdIns(5)P-4-kinase isoform 2-beta;)
genome : 36,932,857 - 36,955,775 (22,919)
query : 1 - 927 (927/927)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
EC number :
EC 2.7.1.149
KEGG pathway :
00562 : Inositol phosphate metabolism (39)
04070 : Phosphatidylinositol signaling system (23)
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013764)
HIX0013764
HIT000693005 (
ENST00000581097
)
(Phosphatidylinositol 5-phosphate 4-kinase type-2 beta; EC=2.7.1.149; 1-phosphatidylinositol 5-phosphate 4-kinase 2-beta; Diphosphoinositide kinase 2-beta; Phosphatidylinositol 5-phosphate 4-kinase type II beta; PI(5)P 4-kinase type II beta; PIP4KII-beta; PtdIns(5)P-4-kinase isoform 2-beta;)
genome : 36,936,806 - 36,956,379 (19,574)
query : 1 - 547 (547/547)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.7.1.149
KEGG pathway :
00562 : Inositol phosphate metabolism (39)
04070 : Phosphatidylinositol signaling system (23)
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, cyto 8, mito 7, extr_plas 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013764)
HIX0013765
HIT000019952
(
AK095097
)
Representative transcript
(Conserved hypothetical protein.)
genome : 36,952,425 - 36,954,624 (2,200)
query : 1 - 2,200 (2,200/2,200)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 21, cyto_nucl 5.33333, nucl 4.5, cyto 3,
cyto_pero 3, mito_nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013765)
HIX0202403
HIT000206619 (
NM_017748
)
(Pre-mRNA-splicing factor CWC25 homolog; Coiled-coil domain-containing protein 49; Spliceosome-associated protein homolog CWC25;)
genome : 36,956,687 - 36,981,603 (24,917)
query : 1 - 3,103 (3,103/3,112)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 0.997
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25.5, cyto_nucl 17.5, cyto 4.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202403)
HIX0202403
HIT000727576 (
NR_073428
)
(Pre-mRNA-splicing factor CWC25 homolog; Coiled-coil domain-containing protein 49; Spliceosome-associated protein homolog CWC25;)
genome : 36,956,687 - 36,981,603 (24,917)
query : 1 - 3,220 (3,220/3,229)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 0.997
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16, cyto 9, extr 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202403)
HIX0202403
HIT000306399
(
CR749362
)
(Pre-mRNA-splicing factor CWC25 homolog; Coiled-coil domain-containing protein 49; Spliceosome-associated protein homolog CWC25;)
genome : 36,956,704 - 36,981,574 (24,871)
query : 1 - 2,267 (2,267/2,285)
6 exons
identity = 0.994
3'(0.997;1.000;0.990;0.833;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29.5, cyto_nucl 15.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202403)
HIX0202403
HIT000384503
(
AK225373
)
(Pre-mRNA-splicing factor CWC25 homolog; Coiled-coil domain-containing protein 49; Spliceosome-associated protein homolog CWC25;)
genome : 36,957,356 - 36,981,574 (24,219)
query : 1 - 2,404 (2,404/2,422)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.996;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR019339 : CBF1-interacting co-repressor CIR, N-terminal domain
IPR022209 : Pre-mRNA splicing factor
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25.5, cyto_nucl 17.5, cyto 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202403)
HIX0202403
HIT000103891 (
ENST00000225428
)
(Pre-mRNA-splicing factor CWC25 homolog; Coiled-coil domain-containing protein 49; Spliceosome-associated protein homolog CWC25;)
genome : 36,957,356 - 36,981,734 (24,379)
query : 1 - 2,565 (2,565/2,581)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25.5, cyto_nucl 17.5, cyto 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202403)
HIX0202403
HIT000034007
(
BC008833
)
Representative transcript
(Pre-mRNA-splicing factor CWC25 homolog; Coiled-coil domain-containing protein 49; Spliceosome-associated protein homolog CWC25;)
genome : 36,957,446 - 36,981,589 (24,144)
query : 1 - 2,330 (2,330/2,347)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR019339 : CBF1-interacting co-repressor CIR, N-terminal domain
IPR022209 : Pre-mRNA splicing factor
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25.5, cyto_nucl 17.5, cyto 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202403)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK004983
Danio
sp. (Zebrafish) : AY648753
Gallus
sp. (Chicken) : BX933115
Bos
sp. (Cow) : ENSBTAT00000034838
Equus
sp. (Horse) : ENSECAT00000020398
Pongo
sp. (Orangutan) : ENSPPYT00000009936
Tetraodon
sp. (Tetraodon) : GSTENT00026393001
Takifugu
sp. (Fugu) : SINFRUT00000166252
Rattus
sp. (Rat) : XM_001081381
Macaca
sp. (Macaque) : XM_001084106
Monodelphis
sp. (Opossum) : XM_001366651
Pan
sp. (Chimpanzee) : XM_511442
Canis
sp. (Dog) : XM_537657
HIX0202403
HIT000002773
(
AK000298
)
(Pre-mRNA-splicing factor CWC25 homolog; Coiled-coil domain-containing protein 49; Spliceosome-associated protein homolog CWC25;)
genome : 36,957,732 - 36,981,553 (23,822)
query : 1 - 2,005 (2,005/2,024)
10 exons
identity = 0.998
3'(0.995;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25.5, cyto_nucl 17.5, cyto 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202403)
HIX0202403
HIT000490739
(
AK296115
)
(Pre-mRNA-splicing factor CWC25 homolog; Coiled-coil domain-containing protein 49; Spliceosome-associated protein homolog CWC25;)
genome : 36,957,978 - 36,981,568 (23,591)
query : 1 - 1,894 (1,894/1,894)
11 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR019339 : CBF1-interacting co-repressor CIR, N-terminal domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16, cyto 9, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202403)
HIX0202403
HIT000635172 (
ENST00000536127
)
(Pre-mRNA-splicing factor CWC25 homolog; Coiled-coil domain-containing protein 49; Spliceosome-associated protein homolog CWC25;)
genome : 36,957,978 - 36,981,568 (23,591)
query : 1 - 1,894 (1,894/1,894)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16, cyto 9, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202403)
HIX0202403
HIT000697156 (
ENST00000585298
)
(Pre-mRNA-splicing factor CWC25 homolog; Coiled-coil domain-containing protein 49; Spliceosome-associated protein homolog CWC25;)
genome : 36,957,978 - 36,981,568 (23,591)
query : 1 - 1,894 (1,894/1,894)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16, cyto 9, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202403)
HIX0202403
HIT000499690
(
AK316077
)
(Pre-mRNA-splicing factor CWC25 homolog; Coiled-coil domain-containing protein 49; Spliceosome-associated protein homolog CWC25;)
genome : 36,959,068 - 36,971,988 (12,921)
query : 2 - 1,161 (1,160/1,161)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 0.999
InterPro :
IPR022209 : Pre-mRNA splicing factor
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202403)
HIX0202403
HIT000690842 (
ENST00000578906
)
(Pre-mRNA-splicing factor CWC25 homolog; Coiled-coil domain-containing protein 49; Spliceosome-associated protein homolog CWC25;)
genome : 36,959,068 - 36,971,988 (12,921)
query : 1 - 1,160 (1,160/1,160)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202403)
HIX0202403
HIT000695884 (
ENST00000584007
)
(Pre-mRNA-splicing factor CWC25 homolog; Coiled-coil domain-containing protein 49; Spliceosome-associated protein homolog CWC25;)
genome : 36,959,093 - 36,966,849 (7,757)
query : 8 - 658 (651/658)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.989
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11.5, extr 11, cyto_nucl 10, cyto 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202403)
HIX0202403
HIT000693001 (
ENST00000581092
)
(Pre-mRNA-splicing factor CWC25 homolog; Coiled-coil domain-containing protein 49; Spliceosome-associated protein homolog CWC25;)
genome : 36,962,756 - 36,966,061 (3,306)
query : 1 - 581 (581/581)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16, mito 16, mito_nucl 16
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202403)
HIX0202403
HIT000497607
(
AK302983
)
(Pre-mRNA-splicing factor CWC25 homolog; Coiled-coil domain-containing protein 49; Spliceosome-associated protein homolog CWC25;)
genome : 36,963,053 - 36,981,608 (18,556)
query : 1 - 1,127 (1,127/1,127)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR019339 : CBF1-interacting co-repressor CIR, N-terminal domain
IPR022209 : Pre-mRNA splicing factor
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202403)
HIX0202403
HIT000694603 (
ENST00000582713
)
(Pre-mRNA-splicing factor CWC25 homolog; Coiled-coil domain-containing protein 49; Spliceosome-associated protein homolog CWC25;)
genome : 36,963,053 - 36,981,608 (18,556)
query : 1 - 1,127 (1,127/1,127)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202403)
HIX0202403
HIT000695316 (
ENST00000583435
)
(Pre-mRNA-splicing factor CWC25 homolog; Coiled-coil domain-containing protein 49; Spliceosome-associated protein homolog CWC25;)
genome : 36,966,607 - 36,981,559 (14,953)
query : 1 - 976 (976/976)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16, cyto 9, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202403)
HIX0202403
HIT000086212
(
BC003085
)
(Pre-mRNA-splicing factor CWC25 homolog; Coiled-coil domain-containing protein 49; Spliceosome-associated protein homolog CWC25;)
genome : 36,966,815 - 36,981,456 (14,642)
query : 1 - 552 (552/587)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR019339 : CBF1-interacting co-repressor CIR, N-terminal domain
IPR022209 : Pre-mRNA splicing factor
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 15, cyto 13.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202403)
HIX0224494
HIT000695913 (
ENST00000584037
)
(Non-protein coding transcript.)
genome : 36,982,091 - 36,982,145 (55)
query : 1 - 55 (55/55)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224494)
HIX0224494
HIT000725943 (
NR_039880
)
(Non-protein coding transcript.)
genome : 36,982,091 - 36,982,145 (55)
query : 1 - 55 (55/55)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224494)
HIX0202561
HIT000481756 (
ENST00000398575
)
(Protein of unknown function DUF4542 family protein.)
genome : 36,991,341 - 36,997,708 (6,368)
query : 1 - 632 (632/632)
3 exons
identity = 0.994
3'(1.000;0.962;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 12.5, cyto 11, nucl 8, extr 7, mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202561)
HIX0202561
HIT000398053 (
NM_001080465
)
(Protein of unknown function DUF4542 family protein.)
genome : 36,991,341 - 36,997,642 (6,302)
query : 1 - 566 (566/566)
3 exons
identity = 0.993
3'(1.000;0.962;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 12.5, cyto 11, nucl 8, extr 7, mito 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202561)
HIX0013767
HIT000477748 (
ENST00000394333
)
(60S ribosomal protein L23; 60S ribosomal protein L17;)
genome : 37,004,118 - 37,009,988 (5,871)
query : 1 - 444 (444/444)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14, extr 9, cyto 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013767)
HIX0013767
HIT000477747 (
ENST00000394332
)
(60S ribosomal protein L23; 60S ribosomal protein L17;)
genome : 37,004,118 - 37,009,975 (5,858)
query : 1 - 625 (625/625)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, mito 12.5, E.R._mito 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013767)
HIX0013767
HIT000583117 (
ENST00000479035
)
(60S ribosomal protein L23; 60S ribosomal protein L17;)
genome : 37,004,120 - 37,010,096 (5,977)
query : 1 - 2,821 (2,821/2,821)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, mito 12.5, E.R._mito 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013767)
HIX0013767
HIT000042110
(
BC034378
)
(60S ribosomal protein L23; 60S ribosomal protein L17;)
genome : 37,006,338 - 37,009,360 (3,023)
query : 17 - 2,748 (2,732/2,796)
2 exons
identity = 0.997
3'(0.997;1.000)5'
coverage = 0.994
InterPro :
IPR000218 : Ribosomal protein L14b/L23e
IPR023571 : Ribosomal protein L14 domain
GO :
0003735 : Molecular Function : structural constituent of ribosome
0005840 : Cellular Component : ribosome
0006412 : Biological Process : translation
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 21.5, mito_nucl 11.5, cyto 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013767)
HIX0013767
HIT000197985 (
NM_000978
)
(60S ribosomal protein L23; 60S ribosomal protein L17;)
genome : 37,006,321 - 37,010,053 (3,733)
query : 1 - 577 (577/594)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, mito 12.5, E.R._mito 7
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013767)
HIX0013767
HIT000337801
(
BC104651
)
Representative transcript
(60S ribosomal protein L23; 60S ribosomal protein L17;)
genome : 37,006,341 - 37,010,053 (3,713)
query : 5 - 561 (557/590)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.993
InterPro :
IPR000218 : Ribosomal protein L14b/L23e
IPR019972 : Ribosomal protein L14 conserved site
IPR023571 : Ribosomal protein L14 domain
GO :
0003735 : Molecular Function : structural constituent of ribosome
0005840 : Cellular Component : ribosome
0006412 : Biological Process : translation
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, mito 12.5, E.R._mito 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013767)
Ortholog candidate ( ->
Evola
)
Canis
sp. (Dog) : AJ388521
Mus
sp. (Mouse) : AK150671
Danio
sp. (Zebrafish) : BC049038
Bos
sp. (Cow) : BC102556
Gallus
sp. (Chicken) : BX933858
Tetraodon
sp. (Tetraodon) : CR710320
Pongo
sp. (Orangutan) : CR857424
Equus
sp. (Horse) : ENSECAT00000014920
Takifugu
sp. (Fugu) : SINFRUT00000152919
Rattus
sp. (Rat) : X58200
Macaca
sp. (Macaque) : XM_001084985
Monodelphis
sp. (Opossum) : XM_001366553
Pan
sp. (Chimpanzee) : XM_511444
HIX0013767
HIT000260607
(
BC062716
)
(60S ribosomal protein L23; 60S ribosomal protein L17;)
genome : 37,006,352 - 37,009,988 (3,637)
query : 8 - 488 (481/523)
5 exons
identity = 0.994
3'(0.983;0.991;1.000;1.000;1.000)5'
coverage = 0.974
InterPro :
IPR000218 : Ribosomal protein L14b/L23e
IPR019972 : Ribosomal protein L14 conserved site
IPR023571 : Ribosomal protein L14 domain
GO :
0003735 : Molecular Function : structural constituent of ribosome
0005840 : Cellular Component : ribosome
0006412 : Biological Process : translation
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, mito 12.5, E.R._mito 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013767)
HIX0013767
HIT000008023
(
AK024749
)
(60S ribosomal protein L23; 60S ribosomal protein L17;)
genome : 37,006,341 - 37,009,989 (3,649)
query : 1 - 492 (492/511)
5 exons
identity = 0.994
3'(0.984;1.000;0.992;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000218 : Ribosomal protein L14b/L23e
IPR019972 : Ribosomal protein L14 conserved site
IPR023571 : Ribosomal protein L14 domain
GO :
0003735 : Molecular Function : structural constituent of ribosome
0005840 : Cellular Component : ribosome
0006412 : Biological Process : translation
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, mito 12.5, E.R._mito 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013767)
HIX0013767
HIT000086241
(
BC003518
)
(60S ribosomal protein L23; 60S ribosomal protein L17;)
genome : 37,006,341 - 37,009,355 (3,015)
query : 1 - 451 (451/469)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000218 : Ribosomal protein L14b/L23e
IPR019972 : Ribosomal protein L14 conserved site
IPR023571 : Ribosomal protein L14 domain
GO :
0003735 : Molecular Function : structural constituent of ribosome
0005840 : Cellular Component : ribosome
0006412 : Biological Process : translation
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, mito 8.5, E.R._mito 5, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013767)
HIX0013767
HIT000034810
(
BC010114
)
(60S ribosomal protein L23; 60S ribosomal protein L17;)
genome : 37,006,341 - 37,009,997 (3,657)
query : 10 - 507 (498/524)
5 exons
identity = 0.988
3'(0.984;1.000;1.000;1.000;0.915)5'
coverage = 0.982
InterPro :
IPR000218 : Ribosomal protein L14b/L23e
IPR019972 : Ribosomal protein L14 conserved site
IPR023571 : Ribosomal protein L14 domain
GO :
0003735 : Molecular Function : structural constituent of ribosome
0005840 : Cellular Component : ribosome
0006412 : Biological Process : translation
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, mito 12.5, E.R._mito 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013767)
HIX0013767
HIT000696774 (
ENST00000584912
)
(60S ribosomal protein L23; 60S ribosomal protein L17;)
genome : 37,006,334 - 37,009,993 (3,660)
query : 1 - 2,779 (2,779/2,779)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 21.5, mito_nucl 11.5, cyto 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013767)
HIX0013767
HIT000105575 (
ENST00000245857
)
(60S ribosomal protein L23; 60S ribosomal protein L17;)
genome : 37,006,334 - 37,009,681 (3,348)
query : 1 - 588 (588/588)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, mito 12.5, E.R._mito 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013767)
HIX0013767
HIT000321996
(
X55954
)
(60S ribosomal protein L23; 60S ribosomal protein L17;)
genome : 37,006,339 - 37,009,975 (3,637)
query : 1 - 479 (479/479)
5 exons
identity = 0.996
3'(0.984;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000218 : Ribosomal protein L14b/L23e
IPR019972 : Ribosomal protein L14 conserved site
IPR023571 : Ribosomal protein L14 domain
GO :
0003735 : Molecular Function : structural constituent of ribosome
0005840 : Cellular Component : ribosome
0006412 : Biological Process : translation
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, mito 12.5, E.R._mito 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013767)
HIX0013767
HIT000696451 (
ENST00000584583
)
(60S ribosomal protein L23; 60S ribosomal protein L17;)
genome : 37,006,339 - 37,006,914 (576)
query : 1 - 429 (429/429)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18, mito_pero 10.3333, E.R._mito 9.83333, extr 8,
cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013767)
HIX0013767
HIT000321799
(
X52839
)
(60S ribosomal protein L23; 60S ribosomal protein L17;)
genome : 37,006,342 - 37,009,988 (3,647)
query : 1 - 490 (490/490)
5 exons
identity = 0.986
3'(0.976;1.000;1.000;1.000;0.895)5'
coverage = 1.000
InterPro :
IPR000218 : Ribosomal protein L14b/L23e
IPR019972 : Ribosomal protein L14 conserved site
IPR023571 : Ribosomal protein L14 domain
GO :
0003735 : Molecular Function : structural constituent of ribosome
0005840 : Cellular Component : ribosome
0006412 : Biological Process : translation
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, mito 12.5, E.R._mito 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013767)
HIX0013767
HIT000338422
(
BC106061
)
(60S ribosomal protein L23; 60S ribosomal protein L17;)
genome : 37,006,367 - 37,009,991 (3,625)
query : 43 - 511 (469/525)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.918
InterPro :
IPR000218 : Ribosomal protein L14b/L23e
IPR019972 : Ribosomal protein L14 conserved site
IPR023571 : Ribosomal protein L14 domain
GO :
0003735 : Molecular Function : structural constituent of ribosome
0005840 : Cellular Component : ribosome
0006412 : Biological Process : translation
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, mito 12.5, E.R._mito 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013767)
HIX0013767
HIT000689361 (
ENST00000577407
)
(60S ribosomal protein L23; 60S ribosomal protein L17;)
genome : 37,006,367 - 37,009,990 (3,624)
query : 1 - 615 (615/615)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, mito 11.5, E.R._mito 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013767)
HIX0013767
HIT000575112 (
ENST00000470646
)
(60S ribosomal protein L23; 60S ribosomal protein L17;)
genome : 37,006,675 - 37,009,677 (3,003)
query : 1 - 333 (333/333)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013767)
HIX0013767
HIT000359376 (
ENST00000378096
)
(60S ribosomal protein L23; 60S ribosomal protein L17;)
genome : 37,006,692 - 37,009,882 (3,191)
query : 1 - 392 (392/392)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14, cyto 10, mito_nucl 8.5, extr 5, cyto_pero 5,
cyto_golg 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013767)
HIX0013767
HIT000008474
(
AK025200
)
(60S ribosomal protein L23; 60S ribosomal protein L17;)
genome : 37,006,936 - 37,009,976 (3,041)
query : 17 - 2,176 (2,160/2,192)
3 exons
identity = 0.999
3'(0.999;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000218 : Ribosomal protein L14b/L23e
IPR023571 : Ribosomal protein L14 domain
GO :
0003735 : Molecular Function : structural constituent of ribosome
0005840 : Cellular Component : ribosome
0006412 : Biological Process : translation
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 21.5, mito_nucl 11.5, cyto 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013767)
HIX0013767
HIT000689710 (
ENST00000577760
)
(60S ribosomal protein L23; 60S ribosomal protein L17;)
genome : 37,006,937 - 37,010,017 (3,081)
query : 1 - 3,081 (3,081/3,081)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013767)
HIX0013767
HIT000020143
(
AK095288
)
(60S ribosomal protein L23; 60S ribosomal protein L17;)
genome : 37,006,937 - 37,009,983 (3,047)
query : 13 - 3,059 (3,047/3,059)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 21, nucl 6, cyto 2, E.R. 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013767)
HIX0013767
HIT000616293 (
ENST00000516890
)
(Non-protein coding transcript.)
genome : 37,007,777 - 37,007,912 (136)
query : 1 - 136 (136/136)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013767)
HIX0013767
HIT000695932 (
ENST00000584056
)
(60S ribosomal protein L23; 60S ribosomal protein L17;)
genome : 37,008,851 - 37,009,991 (1,141)
query : 1 - 549 (549/549)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 25, mito 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013767)
HIX0013767
HIT000367029 (
NR_002576
)
(Non-protein coding transcript.)
genome : 37,009,116 - 37,009,248 (133)
query : 1 - 133 (133/133)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013767)
HIX0013767
HIT000382982
(
AJ609436
)
(Non-protein coding transcript.)
genome : 37,009,116 - 37,009,248 (133)
query : 1 - 133 (133/133)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013767)
HIX0013767
HIT000344052 (
ENST00000362423
)
(Non-protein coding transcript.)
genome : 37,009,116 - 37,009,247 (132)
query : 1 - 132 (132/132)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013767)
HIX0013767
HIT000101178
(
D28349
)
(Non-protein coding transcript.)
genome : 37,009,958 - 37,009,992 (35)
query : 1 - 35 (35/35)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013767)
HIX0212456
HIT000566864 (
ENST00000462007
)
(Ribosomal protein S10 domain containing protein.)
genome : 37,011,567 - 37,011,923 (357)
query : 1 - 357 (357/357)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17, cyto_nucl 9.5, cyto 9, nucl 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0212456)
HIX0224328
HIT000490716
(
AK296092
)
Representative transcript
(Zinc finger, LIM-type domain containing protein.)
genome : 37,026,314 - 37,055,453 (29,140)
query : 1 - 1,167 (1,167/1,167)
4 exons
identity = 0.999
5'(1.000;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR000900 : Nebulin repeat
IPR001781 : Zinc finger, LIM-type
GO :
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224328)
HIX0224328
HIT000695981 (
ENST00000584106
)
(Zinc finger, LIM-type domain containing protein.)
genome : 37,026,314 - 37,055,453 (29,140)
query : 1 - 1,167 (1,167/1,167)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224328)
HIX0224880
HIT000692993 (
ENST00000581083
)
(Conserved hypothetical protein.)
genome : 37,059,957 - 37,060,853 (897)
query : 1 - 437 (437/437)
2 exons
identity = 0.991
3'(1.000;0.980)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, cyto_nucl 7, nucl 6, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224880)
HIX0039533
HIT000691057 (
ENST00000579123
)
(PDZ and LIM domain protein 5 isoform i.)
genome : 37,070,650 - 37,073,090 (2,441)
query : 1 - 1,874 (1,874/1,874)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, mito 9, cyto_nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039533)
HIX0039533
HIT000252297
(
AY358253
)
Representative transcript
(Hypothetical protein.)
genome : 37,071,515 - 37,072,418 (904)
query : 1 - 904 (904/905)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, mito 9, cyto_nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039533)
HIX0224852
HIT000692041 (
ENST00000580121
)
(Hypothetical short protein.)
genome : 37,075,054 - 37,078,022 (2,969)
query : 1 - 456 (456/456)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 17, nucl 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224852)
HIX0224148
HIT000020813
(
AK095958
)
Representative transcript
(Hypothetical protein.)
genome : 37,075,165 - 37,077,754 (2,590)
query : 1 - 2,607 (2,607/2,607)
1 exon
identity = 0.992
5'(0.992)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16, nucl 14.5, cyto 10.5, extr 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224148)
HIX0224148
HIT000086803
(
BC007367
)
(Hypothetical short protein.)
genome : 37,077,399 - 37,078,023 (625)
query : 1 - 625 (625/643)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, nucl 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224148)
HIX0013770
HIT000660417 (
NR_038847
)
(Conserved hypothetical protein.)
genome : 37,081,421 - 37,085,637 (4,217)
query : 1 - 3,692 (3,692/3,708)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24, extr 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013770)
HIX0013770
HIT000695076 (
ENST00000583195
)
(Conserved hypothetical protein.)
genome : 37,081,421 - 37,084,310 (2,890)
query : 1 - 2,365 (2,365/2,365)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto_nucl 11.5, nucl 10, cyto 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013770)
HIX0013770
HIT000087344
(
BC009632
)
(Conserved hypothetical protein.)
genome : 37,081,421 - 37,082,919 (1,499)
query : 1 - 974 (974/991)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto_nucl 11.5, nucl 10, cyto 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013770)
HIX0013770
HIT000097144
(
BC042124
)
(Conserved hypothetical protein.)
genome : 37,081,804 - 37,082,919 (1,116)
query : 1 - 591 (591/606)
2 exons
identity = 0.998
5'(0.997;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15, nucl 14.5, cyto 8.5, extr 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013770)
HIX0013770
HIT000015802
(
AK090935
)
Representative transcript
(Conserved hypothetical protein.)
genome : 37,081,825 - 37,084,310 (2,486)
query : 1 - 1,961 (1,961/1,961)
2 exons
identity = 0.999
5'(0.997;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14.5, extr 11, cyto_nucl 11, cyto 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013770)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK080808
Pongo
sp. (Orangutan) : CR858362
HIX0039142
HIT000316600 (
NM_001008777
)
(F-box only protein 47;)
genome : 37,092,685 - 37,123,655 (30,971)
query : 1 - 2,302 (2,302/2,302)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18.5, cyto_mito 12.3333, nucl 7.5,
cyto_nucl 6.83333, cyto 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039142)
HIX0039142
HIT000359359 (
ENST00000378079
)
(F-box only protein 47;)
genome : 37,092,685 - 37,123,655 (30,971)
query : 1 - 2,302 (2,302/2,302)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18.5, cyto_mito 12.3333, nucl 7.5,
cyto_nucl 6.83333, cyto 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039142)
HIX0039142
HIT000257289
(
AY700575
)
Representative transcript
(F-box only protein 47;)
genome : 37,092,718 - 37,123,655 (30,938)
query : 1 - 2,269 (2,269/2,269)
11 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;0.994;1.000;1.000;
1.000;1.000;1.000;0.989)5'
coverage = 1.000
InterPro :
IPR001810 : F-box domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18.5, cyto_mito 12.3333, nucl 7.5,
cyto_nucl 6.83333, cyto 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039142)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK013672
Bos
sp. (Cow) : BC134684
Canis
sp. (Dog) : ENSCAFT00000038060
Equus
sp. (Horse) : ENSECAT00000015382
Oryzias
sp. (Medaka) : ENSORLT00000019494
Pongo
sp. (Orangutan) : ENSPPYT00000009931
Pan
sp. (Chimpanzee) : ENSPTRT00000059793
Tetraodon
sp. (Tetraodon) : GSTENT00007469001
Takifugu
sp. (Fugu) : SINFRUT00000182621
Macaca
sp. (Macaque) : XM_001085225
Gallus
sp. (Chicken) : XM_001235077
Monodelphis
sp. (Opossum) : XM_001371403
HIX0039142
HIT000501620
(
BC140879
)
(F-box only protein 47;)
genome : 37,093,126 - 37,123,625 (30,500)
query : 1 - 1,831 (1,831/1,831)
11 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000;0.994;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001810 : F-box domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18.5, cyto_mito 12.3333, nucl 7.5,
cyto_nucl 6.83333, cyto 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039142)
HIX0039142
HIT000501621
(
BC140880
)
(F-box only protein 47;)
genome : 37,093,126 - 37,123,625 (30,500)
query : 1 - 1,831 (1,831/1,831)
11 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000;0.994;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001810 : F-box domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18.5, cyto_mito 12.3333, nucl 7.5,
cyto_nucl 6.83333, cyto 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039142)
HIX0224850
HIT000692004 (
ENST00000580084
)
(Non-protein coding transcript.)
genome : 37,152,576 - 37,152,877 (302)
query : 1 - 302 (302/302)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224850)
HIX0224408
HIT000695042 (
ENST00000583161
)
(Hypothetical short protein.)
genome : 37,159,501 - 37,169,285 (9,785)
query : 1 - 636 (636/636)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 26, cyto 3.5, cyto_nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224408)
HIX0224408
HIT000689571 (
ENST00000577621
)
(Hypothetical short protein.)
genome : 37,165,545 - 37,169,284 (3,740)
query : 1 - 510 (510/510)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, mito 9, cyto 4.5, cyto_nucl 4.5,
E.R._mito 4.5, mito_pero 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224408)
HIX0224923
HIT000694409 (
ENST00000582518
)
(Hypothetical short protein.)
genome : 37,182,968 - 37,183,363 (396)
query : 1 - 294 (294/294)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr_plas 8.5, plas 8, extr 7, cyto 7, mito 6.5,
mito_pero 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224923)
HIX0027240
HIT000691188 (
ENST00000579258
)
(Leucine-rich repeat-containing protein 37A3; Precursor;)
genome : 37,183,530 - 37,201,600 (18,071)
query : 1 - 3,717 (3,717/3,717)
12 exons
identity = 0.995
5'(1.000;0.995;0.995;0.996;0.998;0.986;1.000;
1.000;1.000;0.925;0.962;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027240)
HIX0027240
HIT000045687
(
AK125814
)
Representative transcript
(Leucine-rich repeat-containing protein 37A/B like family protein.)
genome : 37,186,159 - 37,209,458 (23,300)
query : 1 - 3,579 (3,579/3,579)
5 exons
identity = 0.999
5'(0.999;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR015753 : Leucine-rich repeat-containing protein 37A/B like
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 24, cyto 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027240)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK029868
Pongo
sp. (Orangutan) : ENSPPYT00000009930
Rattus
sp. (Rat) : XM_220928
Canis
sp. (Dog) : XM_847956
Macaca
sp. (Macaque) : XR_010108
Pan
sp. (Chimpanzee) : XR_025451
HIX0027240
HIT000523835 (
ENST00000425901
)
(Leucine-rich repeat-containing protein 37B precursor.)
genome : 37,186,159 - 37,209,458 (23,300)
query : 1 - 3,580 (3,580/3,580)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 24, cyto 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027240)
HIX0027240
HIT000658936 (
NR_033753
)
(Leucine-rich repeat-containing protein 37B precursor.)
genome : 37,186,159 - 37,209,458 (23,300)
query : 1 - 3,580 (3,580/3,580)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 24, cyto 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027240)
HIX0027240
HIT000339996
(
BC111725
)
(Leucine-rich repeat-containing protein 37B precursor.)
genome : 37,186,431 - 37,209,364 (22,934)
query : 1 - 3,212 (3,212/3,212)
5 exons
identity = 0.998
5'(0.997;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR015753 : Leucine-rich repeat-containing protein 37A/B like
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 24, cyto 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027240)
HIX0027240
HIT000439200_04
(
DQ572669
)
(Non-protein coding transcript.)
genome : 37,188,070 - 37,188,099 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027240)
HIX0212433
HIT000460756_05
(
DQ594225
)
Representative transcript
(Non-protein coding transcript.)
genome : 37,189,167 - 37,189,197 (31)
query : 1 - 31 (31/31)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0212433)
HIX0224994
HIT000696271 (
ENST00000584401
)
(Conserved hypothetical protein.)
genome : 37,190,179 - 37,190,295 (117)
query : 1 - 117 (117/117)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224994)
HIX0018330
HIT000019970
(
AK095115
)
(Conserved hypothetical protein.)
genome : 37,213,272 - 37,237,704 (24,433)
query : 1 - 2,305 (2,305/2,305)
5 exons
identity = 0.999
5'(1.000;1.000;1.000;0.989;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, nucl 3, mito 3, mito_nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018330)
HIX0018330
HIT000659642 (
NR_036551
)
(Conserved hypothetical protein.)
genome : 37,213,272 - 37,237,704 (24,433)
query : 1 - 2,305 (2,305/2,305)
5 exons
identity = 0.999
5'(1.000;1.000;1.000;0.989;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, nucl 3, mito 3, mito_nucl 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018330)
HIX0018330
HIT000695328 (
ENST00000583447
)
(Conserved hypothetical protein.)
genome : 37,213,272 - 37,237,704 (24,433)
query : 1 - 2,305 (2,305/2,305)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, nucl 3, mito 3, mito_nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018330)
HIX0018330
HIT000044093
(
AK124220
)
Representative transcript
(Plexin domain-containing protein 1 precursor.)
genome : 37,213,305 - 37,269,590 (56,286)
query : 1 - 2,010 (2,010/2,010)
6 exons
identity = 0.994
5'(0.972;1.000;1.000;1.000;0.979;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 8, nucl 7, extr 5, pero 5, plas 4, cyto_mito 4,
cyto_golg 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018330)
Ortholog candidate ( ->
Evola
)
Pongo
sp. (Orangutan) : ENSPPYT00000009927
Pan
sp. (Chimpanzee) : ENSPTRT00000016641
HIX0018330
HIT000690366 (
ENST00000578423
)
(Plexin domain-containing protein 1 precursor.)
genome : 37,213,305 - 37,268,492 (55,188)
query : 1 - 1,726 (1,726/1,726)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 9.5, cyto 7, pero 7, cyto_pero 7, extr_plas 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018330)
HIX0018330
HIT000696454 (
ENST00000584586
)
(RAD52 motif-containing protein 1 isoform 7.)
genome : 37,213,317 - 37,214,289 (973)
query : 1 - 279 (279/279)
2 exons
identity = 0.996
5'(1.000;0.994)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, nucl 10, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018330)
HIX0018330
HIT000264853
(
BC072408
)
(Conserved hypothetical protein.)
genome : 37,213,319 - 37,248,212 (34,894)
query : 1 - 2,281 (2,281/2,296)
6 exons
identity = 0.993
5'(1.000;1.000;0.992;0.981;0.992;0.993)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, nucl 3, mito 3, mito_nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018330)
HIX0224545
HIT000065693
(
AF070526
)
Representative transcript
(Hypothetical protein.)
genome : 37,219,566 - 37,221,507 (1,942)
query : 1 - 1,942 (1,942/1,962)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 27, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224545)
HIX0224167
HIT000028429
(
AL833517
)
Representative transcript
(Plexin repeat containing protein.)
genome : 37,221,667 - 37,243,890 (22,224)
query : 1 - 2,868 (2,868/2,883)
7 exons
identity = 0.998
3'(1.000;0.995;1.000;1.000;1.000;1.000;0.968)5'
coverage = 1.000
InterPro :
IPR002165 : Plexin
IPR016201 : Plexin-like fold
GO :
0004872 : Molecular Function : receptor activity
0007275 : Biological Process : multicellular organismal development
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15, plas 9, mito 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224167)
HIX0224167
HIT000690222 (
ENST00000578277
)
(Conserved hypothetical protein.)
genome : 37,224,175 - 37,226,724 (2,550)
query : 1 - 654 (654/654)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 15, extr 5, plas 4, nucl 4, mito 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224167)
HIX0224167
HIT000693923 (
ENST00000582025
)
(Conserved hypothetical protein.)
genome : 37,226,234 - 37,235,523 (9,290)
query : 1 - 339 (339/339)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, nucl 9, cyto_nucl 7, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224167)
HIX0224167
HIT000691346 (
ENST00000579417
)
(Conserved hypothetical protein.)
genome : 37,228,267 - 37,234,261 (5,995)
query : 1 - 568 (568/568)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto_nucl 11.5, nucl 11, cyto 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224167)
HIX0224167
HIT000691208 (
ENST00000579279
)
(Plexin-like fold repeat containing protein.)
genome : 37,234,202 - 37,263,740 (29,539)
query : 1 - 547 (547/547)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16, cyto_nucl 13.5, extr 9, cyto 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224167)
HIX0018330
HIT000508557 (
ENST00000410562
)
(Non-protein coding transcript.)
genome : 37,237,318 - 37,237,440 (123)
query : 1 - 123 (123/123)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018330)
HIX0224167
HIT000542369 (
ENST00000444435
)
(Conserved hypothetical protein.)
genome : 37,253,121 - 37,263,721 (10,601)
query : 1 - 268 (268/268)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 8.5, cyto_nucl 8.5, extr 8, nucl 7.5, cysk 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224167)
HIX0224167
HIT000689788 (
ENST00000577838
)
(Conserved hypothetical protein.)
genome : 37,263,660 - 37,268,430 (4,771)
query : 1 - 544 (544/544)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 11.5, extr 11, nucl 10.5, cyto 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224167)
HIX0224167
HIT000513097 (
ENST00000415163
)
(Conserved hypothetical protein.)
genome : 37,264,376 - 37,308,824 (44,449)
query : 1 - 619 (619/619)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16, nucl 15, cyto 13
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224167)
HIX0224167
HIT000691121 (
ENST00000579190
)
(Conserved hypothetical protein.)
genome : 37,264,455 - 37,310,647 (46,193)
query : 1 - 565 (565/565)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 20.5, nucl 16, cyto 15
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224167)
HIX0224167
HIT000692578 (
ENST00000580667
)
(Conserved hypothetical protein.)
genome : 37,264,968 - 37,309,303 (44,336)
query : 1 - 565 (565/565)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 15, cyto 11.5, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224167)
HIX0224167
HIT000689891 (
ENST00000577941
)
(Conserved hypothetical protein.)
genome : 37,265,501 - 37,309,286 (43,786)
query : 1 - 558 (558/558)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 12.5, nucl 6.5, mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224167)
HIX0018330
HIT000689282 (
ENST00000577328
)
(Hypothetical short protein.)
genome : 37,268,268 - 37,269,443 (1,176)
query : 1 - 366 (366/366)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, extr 13
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018330)
HIX0224167
HIT000695166 (
ENST00000583285
)
(Conserved hypothetical protein.)
genome : 37,283,192 - 37,309,303 (26,112)
query : 1 - 528 (528/528)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 14, cyto 8.5, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224167)
HIX0013772
HIT000542489 (
ENST00000444555
)
(ADP-ribosylation factor-like protein 5C; ADP-ribosylation factor-like protein 12;)
genome : 37,313,147 - 37,323,318 (10,172)
query : 1 - 880 (880/880)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 11, cyto 10.5, extr 9, nucl 6.5, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013772)
HIX0013772
HIT000560918 (
NM_001143968
)
(ADP-ribosylation factor-like protein 5C; ADP-ribosylation factor-like protein 12;)
genome : 37,313,147 - 37,322,414 (9,268)
query : 1 - 941 (941/941)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 11, cyto 10.5, extr 9, nucl 6.5, mito 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013772)
HIX0013772
HIT000110477 (
ENST00000269586
)
(ADP-ribosylation factor-like protein 5C; ADP-ribosylation factor-like protein 12;)
genome : 37,313,147 - 37,322,013 (8,867)
query : 1 - 540 (540/540)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 11, cyto 10.5, extr 9, nucl 6.5, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013772)
HIX0013772
HIT000690848 (
ENST00000578912
)
(ADP-ribosylation factor-like protein 5C; ADP-ribosylation factor-like protein 12;)
genome : 37,316,451 - 37,318,987 (2,537)
query : 1 - 524 (524/524)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 25, cyto 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013772)
HIX0013772
HIT000429572
(
AK310706
)
Representative transcript
(ADP-ribosylation factor-like protein 5C; ADP-ribosylation factor-like protein 12;)
genome : 37,319,806 - 37,323,318 (3,513)
query : 1 - 1,181 (1,181/1,181)
5 exons
identity = 0.990
3'(0.986;1.000;0.993;1.000;0.992)5'
coverage = 1.000
InterPro :
IPR006689 : Small GTPase superfamily, ARF/SAR type
GO :
0005525 : Molecular Function : GTP binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, cyto_nucl 9.5, cyto 8.5, nucl 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013772)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : BC065791
Danio
sp. (Zebrafish) : BC075927
Gallus
sp. (Chicken) : CR385805
Bos
sp. (Cow) : ENSBTAT00000002636
Equus
sp. (Horse) : ENSECAT00000009323
Rattus
sp. (Rat) : ENSRNOT00000037318
HIX0013772
HIT000695004 (
ENST00000583123
)
(ADP-ribosylation factor-like protein 5C; ADP-ribosylation factor-like protein 12;)
genome : 37,320,332 - 37,323,318 (2,987)
query : 1 - 658 (658/658)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, cyto_nucl 9.5, cyto 8.5, nucl 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013772)
HIX0013772
HIT000693162 (
ENST00000581255
)
(ADP-ribosylation factor-like protein 5C; ADP-ribosylation factor-like protein 12;)
genome : 37,321,228 - 37,322,414 (1,187)
query : 1 - 612 (612/612)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 9.83333, mito 9, cyto 8.5, extr 7, nucl 7,
cyto_plas 5.33333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013772)
HIX0013772
HIT000693457 (
ENST00000581554
)
(Conserved hypothetical protein.)
genome : 37,321,326 - 37,324,102 (2,777)
query : 1 - 2,777 (2,777/2,777)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, nucl 9.5, cyto_nucl 8, extr_plas 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013772)
HIX0013772
HIT000018582
(
AK093715
)
(Conserved hypothetical protein.)
genome : 37,321,326 - 37,323,737 (2,412)
query : 1 - 2,412 (2,412/2,412)
1 exon
identity = 0.998
3'(0.998)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, nucl 9.5, cyto_nucl 8, extr_plas 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013772)
HIX0224827
HIT000691186 (
ENST00000579256
)
(Conserved hypothetical protein.)
genome : 37,329,543 - 37,333,756 (4,214)
query : 1 - 573 (573/573)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, nucl 8, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0224827)
HIX0027114
HIT000051904
(
BC037311
)
(Voltage-dependent L-type calcium channel subunit beta-1; CAB1; Calcium channel voltage-dependent subunit beta 1;)
genome : 37,329,709 - 37,353,890 (24,182)
query : 4 - 3,679 (3,676/3,697)
14 exons
identity = 0.999
3'(1.000;1.000;0.990;1.000;0.991;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.998
InterPro :
IPR000584 : Voltage-dependent calcium channel, L-type, beta subunit
IPR001452 : SH3 domain
IPR005443 : Voltage-dependent calcium channel, L-type, beta-1 subunit
IPR008145 : Guanylate kinase/L-type calcium channel beta subunit
GO :
0005245 : Molecular Function : voltage-gated calcium channel activity
0005515 : Molecular Function : protein binding
0005891 : Cellular Component : voltage-gated calcium channel complex
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 15.5, nucl 14.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027114)
HIX0027114
HIT000196820
(
M92303
)
(Voltage-dependent L-type calcium channel subunit beta-1; CAB1; Calcium channel voltage-dependent subunit beta 1;)
genome : 37,329,706 - 37,353,901 (24,196)
query : 1 - 3,658 (3,658/3,658)
14 exons
identity = 0.987
3'(0.982;0.979;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.983)5'
coverage = 1.000
InterPro :
IPR000584 : Voltage-dependent calcium channel, L-type, beta subunit
IPR001452 : SH3 domain
IPR005443 : Voltage-dependent calcium channel, L-type, beta-1 subunit
IPR008145 : Guanylate kinase/L-type calcium channel beta subunit
GO :
0005245 : Molecular Function : voltage-gated calcium channel activity
0005515 : Molecular Function : protein binding
0005891 : Cellular Component : voltage-gated calcium channel complex
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 15.5, nucl 13.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027114)
HIX0027114
HIT000197741 (
NM_000723
)
(Voltage-dependent L-type calcium channel subunit beta-1; CAB1; Calcium channel voltage-dependent subunit beta 1;)
genome : 37,329,709 - 37,353,956 (24,248)
query : 1 - 3,742 (3,742/3,742)
14 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 15.5, nucl 13.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027114)
HIX0027114
HIT000477719 (
ENST00000394303
)
(Voltage-dependent L-type calcium channel subunit beta-1; CAB1; Calcium channel voltage-dependent subunit beta 1;)
genome : 37,329,709 - 37,353,956 (24,248)
query : 1 - 3,742 (3,742/3,742)
14 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 15.5, nucl 13.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027114)
HIX0027114
HIT000329111
(
AB209176
)
(Voltage-dependent L-type calcium channel subunit beta-1; CAB1; Calcium channel voltage-dependent subunit beta 1;)
genome : 37,330,054 - 37,350,136 (20,083)
query : 1 - 5,308 (5,308/5,308)
12 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.998)5'
coverage = 1.000
InterPro :
IPR000584 : Voltage-dependent calcium channel, L-type, beta subunit
IPR001452 : SH3 domain
IPR005443 : Voltage-dependent calcium channel, L-type, beta-1 subunit
IPR008145 : Guanylate kinase/L-type calcium channel beta subunit
GO :
0005245 : Molecular Function : voltage-gated calcium channel activity
0005515 : Molecular Function : protein binding
0005891 : Cellular Component : voltage-gated calcium channel complex
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, cyto_nucl 15, nucl 13
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027114)
HIX0027114
HIT000638383 (
ENST00000539338
)
(Voltage-dependent L-type calcium channel subunit beta-1; CAB1; Calcium channel voltage-dependent subunit beta 1;)
genome : 37,330,054 - 37,350,136 (20,083)
query : 1 - 5,308 (5,308/5,308)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, cyto_nucl 15, nucl 13
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027114)
HIX0027114
HIT000047156
(
AK127283
)
(Voltage-dependent L-type calcium channel subunit beta-1; CAB1; Calcium channel voltage-dependent subunit beta 1;)
genome : 37,330,059 - 37,348,903 (18,845)
query : 2 - 4,071 (4,070/4,071)
12 exons
identity = 0.999
3'(1.000;0.995;1.000;0.993;1.000;1.000;1.000;
1.000;1.000;1.000;0.992;1.000)5'
coverage = 1.000
InterPro :
IPR000584 : Voltage-dependent calcium channel, L-type, beta subunit
IPR001452 : SH3 domain
IPR005443 : Voltage-dependent calcium channel, L-type, beta-1 subunit
IPR008145 : Guanylate kinase/L-type calcium channel beta subunit
GO :
0005245 : Molecular Function : voltage-gated calcium channel activity
0005515 : Molecular Function : protein binding
0005891 : Cellular Component : voltage-gated calcium channel complex
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, cyto_nucl 15, nucl 13
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027114)
HIX0027114
HIT000059708
(
AB054985
)
Representative transcript
(Voltage-dependent L-type calcium channel subunit beta-1; CAB1; Calcium channel voltage-dependent subunit beta 1;)
genome : 37,330,081 - 37,353,893 (23,813)
query : 17 - 3,322 (3,306/3,330)
14 exons
identity = 0.998
3'(0.997;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.995
InterPro :
IPR000584 : Voltage-dependent calcium channel, L-type, beta subunit
IPR001452 : SH3 domain
IPR005443 : Voltage-dependent calcium channel, L-type, beta-1 subunit
IPR008145 : Guanylate kinase/L-type calcium channel beta subunit
GO :
0005245 : Molecular Function : voltage-gated calcium channel activity
0005515 : Molecular Function : protein binding
0005891 : Cellular Component : voltage-gated calcium channel complex
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 15.5, nucl 13.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027114)
Ortholog candidate ( ->
Evola
)
Bos
sp. (Cow) : AF174415
Mus
sp. (Mouse) : AY094173
Danio
sp. (Zebrafish) : DQ198172
Canis
sp. (Dog) : ENSCAFT00000026167
Equus
sp. (Horse) : ENSECAT00000002147
Monodelphis
sp. (Opossum) : ENSMODT00000016164
Oryzias
sp. (Medaka) : ENSORLT00000003735
Oryzias
sp. (Medaka) : ENSORLT00000008198
Pongo
sp. (Orangutan) : ENSPPYT00000009925
Tetraodon
sp. (Tetraodon) : GSTENT00004325001
Takifugu
sp. (Fugu) : SINFRUT00000161754
Rattus
sp. (Rat) : X61394
Macaca
sp. (Macaque) : XM_001086857
Pan
sp. (Chimpanzee) : XM_511449
HIX0027114
HIT000422526
(
AK289729
)
(Voltage-dependent L-type calcium channel subunit beta-1; CAB1; Calcium channel voltage-dependent subunit beta 1;)
genome : 37,331,312 - 37,353,922 (22,611)
query : 1 - 2,105 (2,105/2,105)
14 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000584 : Voltage-dependent calcium channel, L-type, beta subunit
IPR001452 : SH3 domain
IPR005443 : Voltage-dependent calcium channel, L-type, beta-1 subunit
IPR008145 : Guanylate kinase/L-type calcium channel beta subunit
GO :
0005245 : Molecular Function : voltage-gated calcium channel activity
0005515 : Molecular Function : protein binding
0005891 : Cellular Component : voltage-gated calcium channel complex
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 15.5, nucl 13.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027114)
HIX0027114
HIT000492267
(
AK297643
)
(Voltage-dependent L-type calcium channel subunit beta-1; CAB1; Calcium channel voltage-dependent subunit beta 1;)
genome : 37,331,411 - 37,353,955 (22,545)
query : 1 - 1,302 (1,302/1,302)
12 exons
identity = 0.994
3'(0.989;0.942;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.992;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000584 : Voltage-dependent calcium channel, L-type, beta subunit
IPR001452 : SH3 domain
IPR005443 : Voltage-dependent calcium channel, L-type, beta-1 subunit
IPR008145 : Guanylate kinase/L-type calcium channel beta subunit
GO :
0005245 : Molecular Function : voltage-gated calcium channel activity
0005515 : Molecular Function : protein binding
0005891 : Cellular Component : voltage-gated calcium channel complex
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, cyto_nucl 12.5, nucl 11.5, mito 3, pero 3,
mito_pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027114)
HIX0027114
HIT000431251
(
AK312385
)
(Voltage-dependent L-type calcium channel subunit beta-1; CAB1; Calcium channel voltage-dependent subunit beta 1;)
genome : 37,331,446 - 37,353,955 (22,510)
query : 1 - 2,004 (2,004/2,004)
14 exons
identity = 0.999
3'(1.000;1.000;0.990;0.993;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000584 : Voltage-dependent calcium channel, L-type, beta subunit
IPR001452 : SH3 domain
IPR005443 : Voltage-dependent calcium channel, L-type, beta-1 subunit
IPR008145 : Guanylate kinase/L-type calcium channel beta subunit
GO :
0005245 : Molecular Function : voltage-gated calcium channel activity
0005515 : Molecular Function : protein binding
0005891 : Cellular Component : voltage-gated calcium channel complex
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 15.5, nucl 14.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027114)
HIX0027114
HIT000319675 (
NM_199247
)
(Voltage-dependent L-type calcium channel subunit beta-1 isoform 2.)
genome : 37,333,389 - 37,353,956 (20,568)
query : 1 - 1,889 (1,889/1,905)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16.5, nucl 16, cyto 15
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027114)
HIX0027114
HIT000319676 (
NM_199248
)
(Voltage-dependent L-type calcium channel subunit beta-1 isoform 3.)
genome : 37,333,389 - 37,353,956 (20,568)
query : 1 - 1,754 (1,754/1,770)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16, nucl 15, cyto 15
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027114)
HIX0027114
HIT000196819
(
M92302
)
(Voltage-dependent L-type calcium channel subunit beta-1 isoform 3.)
genome : 37,333,389 - 37,353,901 (20,513)
query : 1 - 1,695 (1,695/1,711)
13 exons
identity = 0.995
3'(0.990;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.983)5'
coverage = 1.000
InterPro :
IPR000584 : Voltage-dependent calcium channel, L-type, beta subunit
IPR001452 : SH3 domain
IPR005443 : Voltage-dependent calcium channel, L-type, beta-1 subunit
IPR008145 : Guanylate kinase/L-type calcium channel beta subunit
GO :
0005245 : Molecular Function : voltage-gated calcium channel activity
0005515 : Molecular Function : protein binding
0005891 : Cellular Component : voltage-gated calcium channel complex
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16, nucl 15, cyto 15
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027114)
HIX0027114
HIT000136770 (
ENST00000344140
)
(Voltage-dependent L-type calcium channel subunit beta-1 isoform 2.)
genome : 37,333,389 - 37,353,956 (20,568)
query : 1 - 1,889 (1,889/1,889)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16.5, nucl 16, cyto 15
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027114)
HIX0027114
HIT000477726 (
ENST00000394310
)
(Voltage-dependent L-type calcium channel subunit beta-1 isoform 3.)
genome : 37,333,389 - 37,353,955 (20,567)
query : 1 - 1,753 (1,753/1,753)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16, nucl 15, cyto 15
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027114)
HIX0027114
HIT000191699
(
L06111
)
(Voltage-dependent L-type calcium channel subunit beta-1 isoform 3.)
genome : 37,333,389 - 37,353,748 (20,360)
query : 1 - 1,543 (1,543/1,543)
13 exons
identity = 0.997
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.977;0.964)5'
coverage = 1.000
InterPro :
IPR000584 : Voltage-dependent calcium channel, L-type, beta subunit
IPR001452 : SH3 domain
IPR005443 : Voltage-dependent calcium channel, L-type, beta-1 subunit
IPR008145 : Guanylate kinase/L-type calcium channel beta subunit
GO :
0005245 : Molecular Function : voltage-gated calcium channel activity
0005515 : Molecular Function : protein binding
0005891 : Cellular Component : voltage-gated calcium channel complex
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16.5, cyto 16, nucl 15
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027114)
HIX0027114
HIT000191700
(
L06112
)
(Voltage-dependent L-type calcium channel subunit beta-1 isoform 2.)
genome : 37,333,389 - 37,353,748 (20,360)
query : 1 - 1,678 (1,678/1,678)
13 exons
identity = 0.997
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.977;0.964)5'
coverage = 1.000
InterPro :
IPR000584 : Voltage-dependent calcium channel, L-type, beta subunit
IPR001452 : SH3 domain
IPR005443 : Voltage-dependent calcium channel, L-type, beta-1 subunit
IPR008145 : Guanylate kinase/L-type calcium channel beta subunit
GO :
0005245 : Molecular Function : voltage-gated calcium channel activity
0005515 : Molecular Function : protein binding
0005891 : Cellular Component : voltage-gated calcium channel complex
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16.5, cyto 16, nucl 15
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027114)
HIX0027114
HIT000196372
(
M76560
)
(Voltage-dependent L-type calcium channel subunit beta-1 isoform 3.)
genome : 37,333,389 - 37,353,748 (20,360)
query : 1 - 1,546 (1,546/1,546)
13 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.976)5'
coverage = 1.000
InterPro :
IPR000584 : Voltage-dependent calcium channel, L-type, beta subunit
IPR001452 : SH3 domain
IPR005443 : Voltage-dependent calcium channel, L-type, beta-1 subunit
IPR008145 : Guanylate kinase/L-type calcium channel beta subunit
GO :
0005245 : Molecular Function : voltage-gated calcium channel activity
0005515 : Molecular Function : protein binding
0005891 : Cellular Component : voltage-gated calcium channel complex
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13, cyto 11, mito 4, pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027114)
HIX0027114
HIT000196818
(
M92301
)
(Voltage-dependent L-type calcium channel subunit beta-1 isoform 2.)
genome : 37,333,390 - 37,353,901 (20,512)
query : 1 - 1,829 (1,829/1,829)
13 exons
identity = 0.996
3'(0.990;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.983)5'
coverage = 1.000
InterPro :
IPR000584 : Voltage-dependent calcium channel, L-type, beta subunit
IPR001452 : SH3 domain
IPR005443 : Voltage-dependent calcium channel, L-type, beta-1 subunit
IPR008145 : Guanylate kinase/L-type calcium channel beta subunit
GO :
0005245 : Molecular Function : voltage-gated calcium channel activity
0005515 : Molecular Function : protein binding
0005891 : Cellular Component : voltage-gated calcium channel complex
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16.5, nucl 16, cyto 15
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027114)
HIX0027114
HIT000495290
(
AK300666
)
(Voltage-dependent L-type calcium channel subunit beta-1 isoform 3.)
genome : 37,333,390 - 37,349,750 (16,361)
query : 1 - 1,417 (1,417/1,417)
11 exons
identity = 0.990
3'(1.000;1.000;1.000;1.000;1.000;1.000;0.870;
1.000;1.000;1.000;0.980)5'
coverage = 1.000
InterPro :
IPR000584 : Voltage-dependent calcium channel, L-type, beta subunit
IPR001452 : SH3 domain
IPR005443 : Voltage-dependent calcium channel, L-type, beta-1 subunit
IPR008145 : Guanylate kinase/L-type calcium channel beta subunit
GO :
0005245 : Molecular Function : voltage-gated calcium channel activity
0005515 : Molecular Function : protein binding
0005891 : Cellular Component : voltage-gated calcium channel complex
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto_nucl 17, cyto 11
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027114)
HIX0027114
HIT000694435 (
ENST00000582544
)
(Voltage-dependent L-type calcium channel subunit beta-1; CAB1; Calcium channel voltage-dependent subunit beta 1;)
genome : 37,333,670 - 37,334,523 (854)
query : 1 - 406 (406/406)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14.5, cyto_nucl 12, extr 9, cyto 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027114)
HIX0027114
HIT000689532 (
ENST00000577582
)
(Voltage-dependent L-type calcium channel subunit beta-1; CAB1; Calcium channel voltage-dependent subunit beta 1;)
genome : 37,340,578 - 37,343,692 (3,115)
query : 1 - 563 (563/563)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, cyto 6.5, cyto_nucl 5, nucl 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027114)
HIX0027114
HIT000254337
(
AY393857
)
(Voltage-dependent L-type calcium channel subunit beta-1; CAB1; Calcium channel voltage-dependent subunit beta 1;)
genome : 37,341,095 - 37,353,748 (12,654)
query : 1 - 651 (651/651)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000584 : Voltage-dependent calcium channel, L-type, beta subunit
IPR001452 : SH3 domain
IPR005443 : Voltage-dependent calcium channel, L-type, beta-1 subunit
GO :
0005245 : Molecular Function : voltage-gated calcium channel activity
0005515 : Molecular Function : protein binding
0005891 : Cellular Component : voltage-gated calcium channel complex
0070588 : Biological Process : calcium ion transmembrane transport
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 11.5, cyto 5.5, extr 4, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027114)
HIX0027114
HIT000635658 (
ENST00000536613
)
(Voltage-dependent L-type calcium channel subunit beta-1 isoform 2.)
genome : 37,342,676 - 37,349,746 (7,071)
query : 1 - 575 (575/575)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14.5, cyto_nucl 14.5, cyto 9.5, extr 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027114)
HIX0027114
HIT000694763 (
ENST00000582877
)
(Voltage-dependent L-type calcium channel subunit beta-1; CAB1; Calcium channel voltage-dependent subunit beta 1;)
genome : 37,342,795 - 37,351,324 (8,530)
query : 1 - 599 (599/599)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 27, lyso 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027114)
HIX0027114
HIT000596205 (
ENST00000492737
)
(Voltage-dependent L-type calcium channel subunit beta-1; CAB1; Calcium channel voltage-dependent subunit beta 1;)
genome : 37,342,795 - 37,350,077 (7,283)
query : 1 - 588 (588/588)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, nucl 11, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027114)
HIX0027114
HIT000694306 (
ENST00000582414
)
(Hypothetical short protein.)
genome : 37,347,868 - 37,349,746 (1,879)
query : 1 - 525 (525/525)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027114)
HIX0027114
HIT000689876 (
ENST00000577926
)
(Conserved hypothetical protein.)
genome : 37,348,277 - 37,351,522 (3,246)
query : 1 - 427 (427/427)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, mito 12, cyto 1.5, cyto_pero 1.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027114)
HIX0013773
HIT000335238
(
BC095445
)
Representative transcript
(60S ribosomal protein L19;)
genome : 37,356,536 - 37,360,974 (4,439)
query : 1 - 726 (726/829)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000196 : Ribosomal protein L19/L19e domain
IPR015972 : Ribosomal protein L19/L19e, domain 1
IPR015974 : Ribosomal protein L19/L19e, domain 3
IPR023638 : Ribosomal protein L19/L19e conserved site
GO :
0003735 : Molecular Function : structural constituent of ribosome
0005622 : Cellular Component : intracellular
0005840 : Cellular Component : ribosome
0006412 : Biological Process : translation
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 27, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013773)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB174128
Canis
sp. (Dog) : AJ388522
Gallus
sp. (Chicken) : AJ720076
Mus
sp. (Mouse) : AK010440
Danio
sp. (Zebrafish) : AY648758
Bos
sp. (Cow) : ENSBTAT00000002666
Oryzias
sp. (Medaka) : ENSORLT00000003756
Rattus
sp. (Rat) : J02650
Takifugu
sp. (Fugu) : SINFRUT00000161763
Monodelphis
sp. (Opossum) : XM_001371233
Pan
sp. (Chimpanzee) : XM_511450
HIX0013773
HIT000197988 (
NM_000981
)
(60S ribosomal protein L19;)
genome : 37,356,536 - 37,360,980 (4,445)
query : 1 - 732 (732/748)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 27, mito 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013773)
HIX0013773
HIT000103892 (
ENST00000225430
)
(60S ribosomal protein L19;)
genome : 37,356,536 - 37,360,980 (4,445)
query : 1 - 732 (732/732)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 27, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013773)
HIX0013773
HIT000430724
(
AK311858
)
(60S ribosomal protein L19;)
genome : 37,356,568 - 37,360,901 (4,334)
query : 1 - 621 (621/621)
6 exons
identity = 0.998
5'(0.971;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000196 : Ribosomal protein L19/L19e domain
IPR015972 : Ribosomal protein L19/L19e, domain 1
IPR015974 : Ribosomal protein L19/L19e, domain 3
IPR023638 : Ribosomal protein L19/L19e conserved site
GO :
0003735 : Molecular Function : structural constituent of ribosome
0005622 : Cellular Component : intracellular
0005840 : Cellular Component : ribosome
0006412 : Biological Process : translation
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 27, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013773)
HIX0013773
HIT000050233
(
AK130962
)
(60S ribosomal protein L19;)
genome : 37,356,571 - 37,360,980 (4,410)
query : 3 - 699 (697/699)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.997
InterPro :
IPR000196 : Ribosomal protein L19/L19e domain
IPR015972 : Ribosomal protein L19/L19e, domain 1
IPR015974 : Ribosomal protein L19/L19e, domain 3
IPR023638 : Ribosomal protein L19/L19e conserved site
GO :
0003735 : Molecular Function : structural constituent of ribosome
0005622 : Cellular Component : intracellular
0005840 : Cellular Component : ribosome
0006412 : Biological Process : translation
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 27, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013773)
HIX0013773
HIT000691303_02 (
ENST00000579374
)
(60S ribosomal protein L19;)
genome : 37,356,569 - 37,360,980 (4,412)
query : 1 - 690 (690/690)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 27, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013773)
HIX0013773
HIT000262206
(
BC066315
)
(60S ribosomal protein L19;)
genome : 37,356,570 - 37,360,980 (4,411)
query : 1 - 698 (698/714)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.999
InterPro :
IPR000196 : Ribosomal protein L19/L19e domain
IPR015972 : Ribosomal protein L19/L19e, domain 1
IPR015974 : Ribosomal protein L19/L19e, domain 3
IPR023638 : Ribosomal protein L19/L19e conserved site
GO :
0003735 : Molecular Function : structural constituent of ribosome
0005622 : Cellular Component : intracellular
0005840 : Cellular Component : ribosome
0006412 : Biological Process : translation
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 27, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013773)
HIX0013773
HIT000322600
(
X63527
)
(60S ribosomal protein L19;)
genome : 37,356,571 - 37,360,980 (4,410)
query : 2 - 698 (697/698)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.999
InterPro :
IPR000196 : Ribosomal protein L19/L19e domain
IPR015972 : Ribosomal protein L19/L19e, domain 1
IPR015974 : Ribosomal protein L19/L19e, domain 3
IPR023638 : Ribosomal protein L19/L19e conserved site
GO :
0003735 : Molecular Function : structural constituent of ribosome
0005622 : Cellular Component : intracellular
0005840 : Cellular Component : ribosome
0006412 : Biological Process : translation
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 27, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013773)
HIX0013773
HIT000692249 (
ENST00000580333
)
(60S ribosomal protein L19;)
genome : 37,356,570 - 37,359,006 (2,437)
query : 1 - 577 (577/577)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_mito 9.33333, extr 9, cyto 9, mito 9,
cyto_nucl 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013773)
HIX0013773
HIT000059733_04
(
AB055766
)
(Non-protein coding transcript.)
genome : 37,356,570 - 37,356,602 (33)
query : 1 - 33 (33/34)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 0.971
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013773)
HIX0013773
HIT000260600
(
BC062709
)
(60S ribosomal protein L19;)
genome : 37,356,574 - 37,360,971 (4,398)
query : 4 - 688 (685/719)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.993
InterPro :
IPR000196 : Ribosomal protein L19/L19e domain
IPR015972 : Ribosomal protein L19/L19e, domain 1
IPR015974 : Ribosomal protein L19/L19e, domain 3
IPR023638 : Ribosomal protein L19/L19e conserved site
GO :
0003735 : Molecular Function : structural constituent of ribosome
0005622 : Cellular Component : intracellular
0005840 : Cellular Component : ribosome
0006412 : Biological Process : translation
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 27, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013773)
HIX0013773
HIT000054250
(
BX537435
)
(60S ribosomal protein L19;)
genome : 37,356,574 - 37,360,980 (4,407)
query : 3 - 697 (695/816)
6 exons
identity = 0.999
5'(0.967;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.996
InterPro :
IPR000196 : Ribosomal protein L19/L19e domain
IPR015972 : Ribosomal protein L19/L19e, domain 1
IPR015974 : Ribosomal protein L19/L19e, domain 3
IPR023638 : Ribosomal protein L19/L19e conserved site
GO :
0003735 : Molecular Function : structural constituent of ribosome
0005622 : Cellular Component : intracellular
0005840 : Cellular Component : ribosome
0006412 : Biological Process : translation
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 27, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013773)
HIX0013773
HIT000330862
(
AK223082
)
(60S ribosomal protein L19;)
genome : 37,356,574 - 37,360,980 (4,407)
query : 1 - 694 (694/739)
6 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;0.995)3'
coverage = 0.999
InterPro :
IPR000196 : Ribosomal protein L19/L19e domain
IPR015972 : Ribosomal protein L19/L19e, domain 1
IPR015974 : Ribosomal protein L19/L19e, domain 3
IPR023638 : Ribosomal protein L19/L19e conserved site
GO :
0003735 : Molecular Function : structural constituent of ribosome
0005622 : Cellular Component : intracellular
0005840 : Cellular Component : ribosome
0006412 : Biological Process : translation
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 27, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013773)
HIX0013773
HIT000691190 (
ENST00000579260
)
(60S ribosomal protein L19;)
genome : 37,356,595 - 37,360,964 (4,370)
query : 1 - 1,051 (1,051/1,051)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 27, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013773)
HIX0013773
HIT000694089 (
ENST00000582193
)
(60S ribosomal protein L19;)
genome : 37,356,598 - 37,360,973 (4,376)
query : 1 - 792 (792/792)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 27, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013773)
HIX0013773
HIT000697057 (
ENST00000585199
)
(60S ribosomal protein L19;)
genome : 37,357,385 - 37,359,332 (1,948)
query : 1 - 402 (402/402)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 11.5, nucl 7.5, extr 4, plas 3,
mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013773)
HIX0013773
HIT000029712
(
BC000530
)
(60S ribosomal protein L19;)
genome : 37,357,464 - 37,360,980 (3,517)
query : 16 - 682 (667/706)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.977
InterPro :
IPR000196 : Ribosomal protein L19/L19e domain
IPR015972 : Ribosomal protein L19/L19e, domain 1
IPR015974 : Ribosomal protein L19/L19e, domain 3
IPR023638 : Ribosomal protein L19/L19e conserved site
GO :
0003735 : Molecular Function : structural constituent of ribosome
0005622 : Cellular Component : intracellular
0005840 : Cellular Component : ribosome
0006412 : Biological Process : translation
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 27, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013773)
HIX0013773
HIT000215835
(
S56985
)
(60S ribosomal protein L19;)
genome : 37,357,464 - 37,360,975 (3,512)
query : 15 - 676 (662/690)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.959
InterPro :
IPR000196 : Ribosomal protein L19/L19e domain
IPR015972 : Ribosomal protein L19/L19e, domain 1
IPR015974 : Ribosomal protein L19/L19e, domain 3
IPR023638 : Ribosomal protein L19/L19e conserved site
GO :
0003735 : Molecular Function : structural constituent of ribosome
0005622 : Cellular Component : intracellular
0005840 : Cellular Component : ribosome
0006412 : Biological Process : translation
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 27, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013773)
HIX0013773
HIT000036083
(
BC013016
)
(60S ribosomal protein L19;)
genome : 37,357,464 - 37,360,980 (3,517)
query : 13 - 679 (667/711)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.981
InterPro :
IPR000196 : Ribosomal protein L19/L19e domain
IPR015972 : Ribosomal protein L19/L19e, domain 1
IPR015974 : Ribosomal protein L19/L19e, domain 3
IPR023638 : Ribosomal protein L19/L19e conserved site
GO :
0003735 : Molecular Function : structural constituent of ribosome
0005622 : Cellular Component : intracellular
0005840 : Cellular Component : ribosome
0006412 : Biological Process : translation
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 27, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013773)
HIX0013773
HIT000582087_02 (
ENST00000477964
)
(60S ribosomal protein L19;)
genome : 37,357,464 - 37,360,901 (3,438)
query : 4 - 591 (588/591)
5 exons
identity = 0.973
5'(0.963;0.976;0.967;0.991;0.968)3'
coverage = 0.995
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, cyto_nucl 12.5, cyto 10.5, mito 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013773)
HIX0013773
HIT000084841
(
AY157980
)
(60S ribosomal protein L19;)
genome : 37,357,517 - 37,360,888 (3,372)
query : 1 - 522 (522/522)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000196 : Ribosomal protein L19/L19e domain
IPR015972 : Ribosomal protein L19/L19e, domain 1
IPR015974 : Ribosomal protein L19/L19e, domain 3
GO :
0003735 : Molecular Function : structural constituent of ribosome
0005622 : Cellular Component : intracellular
0005840 : Cellular Component : ribosome
0006412 : Biological Process : translation
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23, nucl 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013773)
HIX0013773
HIT000689691 (
ENST00000577741
)
(60S ribosomal protein L19;)
genome : 37,358,295 - 37,360,901 (2,607)
query : 1 - 1,303 (1,303/1,303)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18.5, cyto_nucl 13.5, cyto 7.5, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013773)
HIX0013773
HIT000689709 (
ENST00000577759
)
(60S ribosomal protein L19;)
genome : 37,360,417 - 37,360,980 (564)
query : 1 - 564 (564/564)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18, mito_nucl 15.5, nucl 11
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013773)
HIX0013774
HIT000023822
(
AL049460
)
(Hypothetical short protein.)
genome : 37,366,789 - 37,367,334 (546)
query : 1 - 547 (547/609)
1 exon
identity = 0.998
3'(0.998)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, cyto_nucl 8.5, nucl 7, cyto 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013774)
HIX0013774
HIT000319578 (
NM_198993
)
(SH3 and cysteine-rich domain-containing protein 2.)
genome : 37,366,789 - 37,382,040 (15,252)
query : 1 - 3,277 (3,277/3,293)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16.5, nucl 15.5, cyto 12.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013774)
HIX0013774
HIT000249212
(
AJ608762
)
Representative transcript
(SH3 and cysteine-rich domain-containing protein 2.)
genome : 37,366,789 - 37,381,974 (15,186)
query : 1 - 3,210 (3,210/3,226)
11 exons
identity = 0.999
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.994)5'
coverage = 1.000
InterPro :
IPR001452 : SH3 domain
IPR002219 : Protein kinase C-like, phorbol ester/diacylglycerol-binding domain
GO :
0005515 : Molecular Function : protein binding
0035556 : Biological Process : intracellular signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16.5, nucl 15.5, cyto 12.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013774)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK144433
Equus
sp. (Horse) : ENSECAT00000026268
Oryzias
sp. (Medaka) : ENSORLT00000004346
Oryzias
sp. (Medaka) : ENSORLT00000010375
Tetraodon
sp. (Tetraodon) : GSTENT00022057001
Takifugu
sp. (Fugu) : SINFRUT00000157658
Takifugu
sp. (Fugu) : SINFRUT00000160933
Rattus
sp. (Rat) : XM_001081348
Macaca
sp. (Macaque) : XM_001085654
Danio
sp. (Zebrafish) : XM_001344434
Monodelphis
sp. (Opossum) : XM_001366502
Canis
sp. (Dog) : XM_548149
Bos
sp. (Cow) : XM_616588
Pan
sp. (Chimpanzee) : XR_022360
HIX0013774
HIT000128359 (
ENST00000333461
)
(SH3 and cysteine-rich domain-containing protein 2.)
genome : 37,366,789 - 37,382,125 (15,337)
query : 1 - 3,362 (3,362/3,362)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16.5, nucl 15.5, cyto 12.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013774)
HIX0013774
HIT000339336
(
BC109231
)
(SH3 and cysteine-rich domain-containing protein 2.)
genome : 37,367,494 - 37,381,921 (14,428)
query : 1 - 2,248 (2,248/2,248)
11 exons
identity = 0.998
3'(0.997;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, cyto_nucl 11, nucl 10.5, cyto 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013774)
HIX0013774
HIT000696369 (
ENST00000584501
)
(SH3 and cysteine-rich domain-containing protein 2.)
genome : 37,367,494 - 37,381,921 (14,428)
query : 1 - 2,251 (2,251/2,251)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, cyto_nucl 11, nucl 10.5, cyto 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013774)
HIX0013774
HIT000249788
(
AK131500
)
(SH3 and cysteine-rich domain-containing protein 2.)
genome : 37,367,556 - 37,382,040 (14,485)
query : 1 - 2,510 (2,510/2,510)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.997)5'
coverage = 1.000
InterPro :
IPR001452 : SH3 domain
IPR002219 : Protein kinase C-like, phorbol ester/diacylglycerol-binding domain
GO :
0005515 : Molecular Function : protein binding
0035556 : Biological Process : intracellular signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16.5, nucl 15.5, cyto 12.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013774)
HIX0013774
HIT000564000
(
AM903073
)
(SH3 and cysteine-rich domain-containing protein 2.)
genome : 37,368,543 - 37,381,759 (13,217)
query : 1 - 1,242 (1,242/1,242)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001452 : SH3 domain
IPR002219 : Protein kinase C-like, phorbol ester/diacylglycerol-binding domain
GO :
0005515 : Molecular Function : protein binding
0035556 : Biological Process : intracellular signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16.5, nucl 15.5, cyto 12.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0013774)
HIX0194936
pHIT000116996 ( pHIT000116996 )
Representative transcript
(Conserved hypothetical protein.)
genome : 37,394,116 - 37,410,731 (16,616)
query : 1 - 621 (621/621)
8 exons
InterPro :
IPR007604 : CP2 transcription factor
SOSUI :
SOLUBLE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0194936)
CAGE tag :
T17F020F91F0
HIX0194936
pHIT000029082 ( pHIT000029082 )
(Conserved hypothetical protein.)
genome : 37,394,116 - 37,403,876 (9,761)
query : 1 - 765 (765/765)
8 exons
InterPro :
IPR007604 : CP2 transcription factor
SOSUI :
SOLUBLE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0194936)
CAGE tag :
H21BA19I0604
HIX0194936
pHIT000090443 ( pHIT000090443 )
(Conserved hypothetical protein.)
genome : 37,394,116 - 37,403,876 (9,761)
query : 1 - 669 (669/669)
7 exons
SOSUI :
SOLUBLE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0194936)
CAGE tag :
H21BA19I0604
HIX0194936
HIT000691329 (
ENST00000579400
)
(CP2 transcription factor domain containing protein.)
genome : 37,394,719 - 37,401,920 (7,202)
query : 1 - 975 (975/975)
11 exons
identity = 0.991
5'(1.000;1.000;1.000;0.981;1.000;1.000;1.000;
1.000;0.927;0.962;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto_nucl 15, cyto 7, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0194936)
HIX0194936
HIT000692182 (
ENST00000580264
)
(Sterile alpha motif/pointed domain containing protein.)
genome : 37,400,216 - 37,407,071 (6,856)
query : 1 - 633 (633/633)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, cyto_nucl 8, nucl 7, cyto 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0194936)
HIX0023108
HIT000024785
(
AL117623
)
(Hypothetical protein.)
genome : 37,408,897 - 37,410,340 (1,444)
query : 1 - 1,443 (1,443/1,462)
1 exon
identity = 0.996
3'(0.996)5'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, mito 8, cyto 6, extr_plas 6, mito_nucl 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023108)
HIX0023108
HIT000210962 (
NM_032875
)
(F-box/LRR-repeat protein 20; F-box and leucine-rich repeat protein 20; F-box/LRR-repeat protein 2-like;)
genome : 37,408,897 - 37,557,909 (149,013)
query : 1 - 10,381 (10,381/10,381)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, mito 5, nucl 4, extr 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023108)
HIX0023108
HIT000655483 (
NM_001184906
)
(F-box/LRR-repeat protein 20; F-box and leucine-rich repeat protein 20; F-box/LRR-repeat protein 2-like;)
genome : 37,408,897 - 37,557,909 (149,013)
query : 1 - 10,285 (10,285/10,285)
14 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, mito 6, extr 3, nucl 3, E.R._mito 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023108)
HIX0023108
HIT000696944 (
ENST00000585086
)
(Conserved hypothetical protein.)
genome : 37,408,897 - 37,410,550 (1,654)
query : 1 - 1,654 (1,654/1,654)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, mito 8, cyto 6, extr_plas 6, mito_nucl 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023108)
HIX0023108
HIT000097049
(
BC042012
)
(Conserved hypothetical protein.)
genome : 37,408,917 - 37,410,550 (1,634)
query : 1 - 1,634 (1,634/1,649)
1 exon
identity = 0.995
3'(0.995)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, mito 8, cyto 6, extr_plas 6, mito_nucl 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023108)
HIX0023108
HIT000007964
(
AK024690
)
(Conserved hypothetical protein.)
genome : 37,413,257 - 37,414,917 (1,661)
query : 1 - 1,661 (1,661/1,692)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, mito 6, nucl 2, cyto 2, cyto_nucl 2, golg 2,
cyto_golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023108)
HIX0023108
HIT000424641
(
AK291844
)
(F-box/LRR-repeat protein 20; F-box and leucine-rich repeat protein 20; F-box/LRR-repeat protein 2-like;)
genome : 37,415,384 - 37,557,909 (142,526)
query : 12 - 1,750 (1,739/1,750)
16 exons
identity = 0.997
3'(0.994;1.000;0.991;1.000;1.000;1.000;0.992;
1.000;1.000;1.000;1.000;1.000;0.987;1.000;
0.984;1.000)5'
coverage = 0.994
InterPro :
IPR001810 : F-box domain
IPR006553 : Leucine-rich repeat, cysteine-containing subtype
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, mito 6, nucl 4, mito_pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023108)
HIX0023108
HIT000695491 (
ENST00000583610
)
(F-box/LRR-repeat protein 20; F-box and leucine-rich repeat protein 20; F-box/LRR-repeat protein 2-like;)
genome : 37,415,384 - 37,557,909 (142,526)
query : 1 - 1,739 (1,739/1,739)
16 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, mito 5, nucl 4, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment