bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0059826
HIT000364745 (
ENST00000383467
)
(Leucine rich repeat 4 containing protein.)
genome : 7,231,123 - 7,232,045 (923)
query : 1 - 923 (923/923)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11, extr 7, cyto 7, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0059826)
HIX0059826
HIT000485781 (
NM_001105581
)
(Leucine rich repeat 4 containing protein.)
genome : 7,231,137 - 7,232,042 (906)
query : 1 - 906 (906/906)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11, extr 7, cyto 7, mito 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0059826)
HIX0137181
HIT000474851 (
ENST00000391324
)
(Non-protein coding transcript.)
genome : 7,301,018 - 7,301,151 (134)
query : 1 - 134 (134/134)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0137181)
HIX0027374
HIT000127637 (
ENST00000332175
)
(Receptor-type tyrosine-protein phosphatase mu; Protein-tyrosine phosphatase mu; R-PTP-mu; EC=3.1.3.48; Precursor;)
genome : 7,566,780 - 8,406,859 (840,080)
query : 1 - 6,095 (6,095/6,095)
31 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 10, extr 7, pero 5.5, E.R. 5, cysk_plas 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027374)
HIX0027374
HIT000435967
(
BC151842
)
Representative transcript
(MAM domain containing protein.)
genome : 7,566,780 - 8,406,660 (839,881)
query : 1 - 5,947 (5,947/5,962)
32 exons
identity = 0.996
5'(0.988;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.846;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.992;0.988;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000242 : Protein-tyrosine phosphatase, receptor/non-receptor type
IPR000387 : Protein-tyrosine/Dual specificity phosphatase
IPR000998 : MAM domain
IPR003961 : Fibronectin type III
IPR013151 : Immunoglobulin
IPR016130 : Protein-tyrosine phosphatase, active site
IPR029021 : Protein-tyrosine phosphatase-like
GO :
0004725 : Molecular Function : protein tyrosine phosphatase activity
0005515 : Molecular Function : protein binding
0006470 : Biological Process : protein dephosphorylation
0016020 : Cellular Component : membrane
0016311 : Biological Process : dephosphorylation
0016791 : Molecular Function : phosphatase activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 10, extr 7, pero 5.5, E.R. 5, cysk_plas 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027374)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : BC079621
Gallus
sp. (Chicken) : BX931081
Pongo
sp. (Orangutan) : CR861211
Macaca
sp. (Macaque) : ENSMMUT00000001105
Oryzias
sp. (Medaka) : ENSORLT00000014116
Tetraodon
sp. (Tetraodon) : GSTENT00027690001
Takifugu
sp. (Fugu) : SINFRUT00000161208
Rattus
sp. (Rat) : U66567
Macaca
sp. (Macaque) : XM_001118594
Monodelphis
sp. (Opossum) : XM_001370031
Equus
sp. (Horse) : XM_001915042
Pan
sp. (Chimpanzee) : XM_512029
Canis
sp. (Dog) : XM_537326
Bos
sp. (Cow) : XM_616212
HIX0027374
HIT000692090 (
ENST00000580170
)
(Receptor-type tyrosine-protein phosphatase mu; Protein-tyrosine phosphatase mu; R-PTP-mu; EC=3.1.3.48; Precursor;)
genome : 7,566,780 - 8,406,666 (839,887)
query : 1 - 5,941 (5,941/5,941)
32 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.846;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 10, extr 7, pero 5.5, E.R. 5, cysk_plas 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027374)
HIX0027374
HIT000199720 (
NM_002845
)
(Receptor-type tyrosine-protein phosphatase mu; Protein-tyrosine phosphatase mu; R-PTP-mu; EC=3.1.3.48; Precursor;)
genome : 7,567,314 - 8,406,859 (839,546)
query : 1 - 5,561 (5,561/5,585)
31 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 10, extr 7, pero 5.5, E.R. 5, cysk_plas 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027374)
HIX0027374
HIT000485723 (
NM_001105244
)
(Receptor-type tyrosine-protein phosphatase mu; Protein-tyrosine phosphatase mu; R-PTP-mu; EC=3.1.3.48; Precursor;)
genome : 7,567,314 - 8,406,859 (839,546)
query : 1 - 5,600 (5,600/5,624)
32 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.846;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 10, extr 7, pero 5.5, E.R. 5, cysk_plas 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027374)
HIX0027374
HIT000498276
(
AK303652
)
(Receptor-type tyrosine-protein phosphatase mu; Protein-tyrosine phosphatase mu; R-PTP-mu; EC=3.1.3.48; Precursor;)
genome : 7,567,816 - 8,406,628 (838,813)
query : 1 - 2,652 (2,652/2,652)
17 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.997;1.000;1.000;0.990;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
InterPro :
IPR000998 : MAM domain
IPR003961 : Fibronectin type III
IPR013151 : Immunoglobulin
GO :
0005515 : Molecular Function : protein binding
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
pero 20, plas 7, extr_plas 6, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027374)
HIX0027374
HIT000322208
(
X58288
)
(Receptor-type tyrosine-protein phosphatase mu; Protein-tyrosine phosphatase mu; R-PTP-mu; EC=3.1.3.48; Precursor;)
genome : 7,567,817 - 8,406,803 (838,987)
query : 1 - 4,998 (4,998/4,998)
31 exons
identity = 0.996
5'(0.973;1.000;0.993;1.000;1.000;1.000;1.000;
0.997;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.976;1.000;0.984)3'
coverage = 1.000
EC number :
EC 3.1.3.48
InterPro :
IPR000242 : Protein-tyrosine phosphatase, receptor/non-receptor type
IPR000387 : Protein-tyrosine/Dual specificity phosphatase
IPR000998 : MAM domain
IPR003961 : Fibronectin type III
IPR013151 : Immunoglobulin
IPR016130 : Protein-tyrosine phosphatase, active site
IPR029021 : Protein-tyrosine phosphatase-like
GO :
0004725 : Molecular Function : protein tyrosine phosphatase activity
0005515 : Molecular Function : protein binding
0006470 : Biological Process : protein dephosphorylation
0016020 : Cellular Component : membrane
0016311 : Biological Process : dephosphorylation
0016791 : Molecular Function : phosphatase activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr_plas 11, plas 10, extr 10, pero 6, E.R. 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027374)
HIX0027374
HIT000483058 (
ENST00000400060
)
(Receptor-type tyrosine-protein phosphatase mu; Protein-tyrosine phosphatase mu; R-PTP-mu; EC=3.1.3.48; Precursor;)
genome : 7,567,817 - 8,406,160 (838,344)
query : 1 - 4,401 (4,401/4,401)
33 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 11, extr 6, pero 5.5, cysk_plas 5.5, E.R. 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027374)
HIX0195616
pHIT000030734 ( pHIT000030734 )
Representative transcript
(Hypothetical protein.)
genome : 7,586,202 - 7,657,332 (71,131)
query : 1 - 1,215 (1,215/1,215)
6 exons
SOSUI :
SOLUBLE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0195616)
CAGE tag :
H15BA64E1103
HIX0027417
HIT000049167
(
AK129896
)
Representative transcript
(Conserved hypothetical protein.)
genome : 7,641,011 - 7,642,846 (1,836)
query : 1 - 1,836 (1,836/1,836)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 14, lyso 10, extr 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027417)
HIX0225357
HIT000691437 (
ENST00000579509
)
(Hypothetical protein.)
genome : 7,741,308 - 7,749,441 (8,134)
query : 1 - 1,057 (1,057/1,057)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, extr 12, cyto_nucl 10, nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225357)
HIX0225357
HIT000691261 (
ENST00000579332
)
(Hypothetical short protein.)
genome : 7,747,531 - 7,754,829 (7,299)
query : 1 - 821 (821/821)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11, cyto 10, extr 7, cyto_mito 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225357)
HIX0027374
HIT000053648
(
BC051651
)
(Receptor-type tyrosine-protein phosphatase mu; Protein-tyrosine phosphatase mu; R-PTP-mu; EC=3.1.3.48; Precursor;)
genome : 7,754,971 - 8,406,854 (651,884)
query : 1 - 5,292 (5,292/5,396)
31 exons
identity = 0.998
5'(1.000;1.000;0.996;1.000;1.000;1.000;1.000;
0.997;1.000;0.995;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.989;1.000;1.000;1.000;
1.000;0.994;1.000;1.000;1.000;1.000;1.000;
0.988;1.000;0.997)3'
coverage = 0.981
EC number :
EC 3.1.3.48
InterPro :
IPR000242 : Protein-tyrosine phosphatase, receptor/non-receptor type
IPR000387 : Protein-tyrosine/Dual specificity phosphatase
IPR000998 : MAM domain
IPR003961 : Fibronectin type III
IPR013151 : Immunoglobulin
IPR016130 : Protein-tyrosine phosphatase, active site
IPR029021 : Protein-tyrosine phosphatase-like
GO :
0004725 : Molecular Function : protein tyrosine phosphatase activity
0005515 : Molecular Function : protein binding
0006470 : Biological Process : protein dephosphorylation
0016020 : Cellular Component : membrane
0016311 : Biological Process : dephosphorylation
0016791 : Molecular Function : phosphatase activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 12.5, nucl 6.5, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027374)
HIX0027374
HIT000483054 (
ENST00000400053
)
(Receptor-type tyrosine-protein phosphatase mu; Protein-tyrosine phosphatase mu; R-PTP-mu; EC=3.1.3.48; Precursor;)
genome : 7,754,971 - 8,406,854 (651,884)
query : 1 - 5,292 (5,292/5,292)
31 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 12.5, nucl 6.5, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027374)
HIX0195792
pHIT000118080 ( pHIT000118080 )
Representative transcript
(Hypothetical protein.)
genome : 7,808,165 - 7,810,231 (2,067)
query : 1 - 309 (309/309)
3 exons
SOSUI :
SOLUBLE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0195792)
CAGE tag :
T18F0076144B
HIX0039811
HIT000090615
(
BC022425
)
Representative transcript
(Hypothetical short protein.)
genome : 7,814,116 - 7,815,701 (1,586)
query : 1 - 1,586 (1,586/1,618)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto 7.5, cyto_nucl 7.5, nucl 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039811)
HIX0039811
HIT000695912 (
ENST00000584036
)
(Conserved hypothetical protein.)
genome : 7,814,116 - 7,815,728 (1,613)
query : 1 - 1,613 (1,613/1,613)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto 7.5, cyto_nucl 7.5, nucl 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039811)
HIX0225527
HIT000692017 (
ENST00000580097
)
(Non-protein coding transcript.)
genome : 7,840,935 - 7,841,058 (124)
query : 1 - 124 (124/124)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225527)
HIX0020253
HIT000020780
(
AK095925
)
Representative transcript
(Conserved hypothetical protein.)
genome : 7,943,241 - 7,945,295 (2,055)
query : 1 - 2,055 (2,055/2,055)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14, nucl 6, plas 5.5, cyto 4, extr_plas 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020253)
HIX0027374
HIT000690852 (
ENST00000578916
)
(Receptor-type tyrosine-protein phosphatase mu; Protein-tyrosine phosphatase mu; R-PTP-mu; EC=3.1.3.48; Precursor;)
genome : 7,946,868 - 8,069,710 (122,843)
query : 1 - 604 (604/604)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23, cyto_nucl 13.5, cysk 4, nucl 2, lyso 2,
cysk_plas 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027374)
HIX0027374
HIT000489116
(
AK294492
)
(Receptor-type tyrosine-protein phosphatase mu isoform 1 precursor.)
genome : 7,946,929 - 8,406,499 (459,571)
query : 1 - 4,082 (4,082/4,082)
27 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.989;
1.000;1.000;1.000;1.000;0.994;1.000;1.000;
1.000;1.000;1.000;0.988;1.000;0.995)3'
coverage = 1.000
EC number :
EC 3.1.3.48
InterPro :
IPR000242 : Protein-tyrosine phosphatase, receptor/non-receptor type
IPR000387 : Protein-tyrosine/Dual specificity phosphatase
IPR003961 : Fibronectin type III
IPR016130 : Protein-tyrosine phosphatase, active site
IPR029021 : Protein-tyrosine phosphatase-like
GO :
0004725 : Molecular Function : protein tyrosine phosphatase activity
0005515 : Molecular Function : protein binding
0006470 : Biological Process : protein dephosphorylation
0016311 : Biological Process : dephosphorylation
0016791 : Molecular Function : phosphatase activity
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 12.5, cyto_nucl 11, nucl 8.5, E.R. 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027374)
HIX0027374
HIT000541947 (
ENST00000444013
)
(Receptor-type tyrosine-protein phosphatase mu; Protein-tyrosine phosphatase mu; R-PTP-mu; EC=3.1.3.48; Precursor;)
genome : 7,946,952 - 8,406,854 (459,903)
query : 1 - 4,414 (4,414/4,414)
27 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 12.5, cyto_nucl 11, nucl 8.5, E.R. 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027374)
HIX0014317
HIT000005332
(
AK022058
)
Representative transcript
(Conserved hypothetical protein.)
genome : 8,014,415 - 8,017,580 (3,166)
query : 1 - 3,170 (3,170/3,170)
1 exon
identity = 0.997
5'(0.997)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, nucl 4, cyto 4, mito 4, cyto_nucl 4,
cyto_mito 4, mito_nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0014317)
HIX0027374
HIT000690540 (
ENST00000578600
)
(Receptor-type tyrosine-protein phosphatase mu; Protein-tyrosine phosphatase mu; R-PTP-mu; EC=3.1.3.48; Precursor;)
genome : 8,017,790 - 8,069,957 (52,168)
query : 1 - 578 (578/578)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto 13, cyto_nucl 11, nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027374)
HIX0027374
HIT000690512 (
ENST00000578571
)
(Receptor-type tyrosine-protein phosphatase kappa isoform b precursor.)
genome : 8,017,821 - 8,113,630 (95,810)
query : 1 - 1,106 (1,106/1,106)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 17, nucl 16, cyto 14
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027374)
HIX0027374
HIT000690636 (
ENST00000578698
)
(Receptor-type tyrosine-protein phosphatase mu; Protein-tyrosine phosphatase mu; R-PTP-mu; EC=3.1.3.48; Precursor;)
genome : 8,049,362 - 8,076,562 (27,201)
query : 1 - 486 (486/486)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21, cyto_nucl 18, nucl 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027374)
HIX0027374
HIT000695170 (
ENST00000583289
)
(Receptor-type tyrosine-protein phosphatase mu; Protein-tyrosine phosphatase mu; R-PTP-mu; EC=3.1.3.48; Precursor;)
genome : 8,085,700 - 8,143,776 (58,077)
query : 1 - 792 (792/792)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 9.5, cyto_mito 9.5, cyto 9, mito_pero 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027374)
HIX0027374
HIT000689422 (
ENST00000577468
)
(Receptor-type tyrosine-protein phosphatase mu isoform 1 precursor.)
genome : 8,113,569 - 8,296,453 (182,885)
query : 1 - 701 (701/701)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 12, pero 8, plas 5.5, nucl 5, extr_plas 4,
mito_pero 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027374)
HIX0027374
HIT000096211
(
BC040543
)
(Receptor-type tyrosine-protein phosphatase mu; Protein-tyrosine phosphatase mu; R-PTP-mu; EC=3.1.3.48; Precursor;)
genome : 8,121,850 - 8,406,664 (284,815)
query : 1 - 4,639 (4,639/4,654)
17 exons
identity = 0.999
5'(0.998;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.999;1.000;1.000;1.000;
0.988;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
InterPro :
IPR000242 : Protein-tyrosine phosphatase, receptor/non-receptor type
IPR000387 : Protein-tyrosine/Dual specificity phosphatase
IPR016130 : Protein-tyrosine phosphatase, active site
IPR029021 : Protein-tyrosine phosphatase-like
GO :
0004725 : Molecular Function : protein tyrosine phosphatase activity
0006470 : Biological Process : protein dephosphorylation
0016311 : Biological Process : dephosphorylation
0016791 : Molecular Function : phosphatase activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, extr 10, nucl 4, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027374)
HIX0027374
HIT000689777 (
ENST00000577827
)
(Receptor-type tyrosine-protein phosphatase mu; Protein-tyrosine phosphatase mu; R-PTP-mu; EC=3.1.3.48; Precursor;)
genome : 8,121,850 - 8,406,664 (284,815)
query : 1 - 4,640 (4,640/4,640)
17 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, extr 10, nucl 4, mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027374)
HIX0014318
HIT000018036
(
AK093169
)
Representative transcript
(Conserved hypothetical protein.)
genome : 8,192,897 - 8,195,399 (2,503)
query : 1 - 2,505 (2,505/2,505)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, cyto 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0014318)
HIX0014319
HIT000009679
(
AK026405
)
Representative transcript
(Conserved hypothetical protein.)
genome : 8,198,326 - 8,200,720 (2,395)
query : 1 - 2,396 (2,396/2,412)
1 exon
identity = 0.997
5'(0.997)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0014319)
HIX0014319
HIT000009773
(
AK026499
)
(Conserved hypothetical protein.)
genome : 8,198,330 - 8,200,720 (2,391)
query : 1 - 2,491 (2,491/2,507)
1 exon
identity = 0.957
5'(0.957)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0014319)
HIX0027374
HIT000690039 (
ENST00000578093
)
(Receptor-type tyrosine-protein phosphatase mu; Protein-tyrosine phosphatase mu; R-PTP-mu; EC=3.1.3.48; Precursor;)
genome : 8,244,055 - 8,251,819 (7,765)
query : 1 - 464 (464/464)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 13.5, extr 8, cyto 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027374)
HIX0027374
HIT000692748 (
ENST00000580838
)
(Receptor-type tyrosine-protein phosphatase mu; Protein-tyrosine phosphatase mu; R-PTP-mu; EC=3.1.3.48; Precursor;)
genome : 8,247,872 - 8,270,445 (22,574)
query : 1 - 676 (676/676)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14, cyto_nucl 13, cyto 8, extr 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027374)
HIX0019960
HIT000007729
(
AK024455
)
Representative transcript
(Conserved hypothetical protein.)
genome : 8,349,955 - 8,354,210 (4,256)
query : 1 - 4,255 (4,255/4,255)
1 exon
identity = 0.996
3'(0.996)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto 7, nucl 6, extr_plas 6, cyto_pero 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019960)
HIX0174287
HIT000562598 (
NR_024419
)
(Hypothetical protein.)
genome : 8,360,818 - 8,367,032 (6,215)
query : 1 - 616 (616/616)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto_nucl 9.16667, nucl 7.5, cyto 7.5,
cyto_pero 5.5, mito_nucl 5.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0174287)
HIX0174287
HIT000692406 (
ENST00000580491
)
(Hypothetical protein.)
genome : 8,360,818 - 8,367,032 (6,215)
query : 1 - 616 (616/616)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto_nucl 9.16667, nucl 7.5, cyto 7.5,
cyto_pero 5.5, mito_nucl 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0174287)
HIX0027374
HIT000695034 (
ENST00000583153
)
(Receptor-type tyrosine-protein phosphatase U; R-PTP-U; EC=3.1.3.48; Pancreatic carcinoma phosphatase 2; PCP-2; Protein-tyrosine phosphatase J; PTP-J; hPTP-J; Protein-tyrosine phosphatase pi; PTP pi; Protein-tyrosine phosphatase receptor omicron; PTP-RO; Receptor-type protein-tyrosine phosphatase psi; R-PTP-psi; Precursor;)
genome : 8,370,931 - 8,379,311 (8,381)
query : 1 - 713 (713/713)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.1.3.48
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto 10.5, cyto_nucl 9, nucl 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027374)
HIX0027374
HIT000692859 (
ENST00000580949
)
(Hypothetical short protein.)
genome : 8,399,699 - 8,406,662 (6,964)
query : 1 - 687 (687/687)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, nucl 4.5, mito 3, cyto_nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027374)
HIX0027403
HIT000047295
(
AK127422
)
Representative transcript
(Conserved hypothetical protein.)
genome : 8,402,845 - 8,405,159 (2,315)
query : 1 - 2,315 (2,315/2,315)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 13, extr 11, cyto 4.5, cyto_nucl 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027403)
HIX0027403
HIT000690833 (
ENST00000578897
)
(Conserved hypothetical protein.)
genome : 8,402,845 - 8,405,159 (2,315)
query : 1 - 2,315 (2,315/2,315)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 13, extr 11, cyto 4.5, cyto_nucl 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027403)
HIX0039786
HIT000243002
(
AF403226
)
Representative transcript
(Non-protein coding transcript.)
genome : 8,406,759 - 8,406,951 (193)
query : 1 - 193 (193/193)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039786)
HIX0039786
HIT000691729 (
ENST00000579805
)
(Non-protein coding transcript.)
genome : 8,406,759 - 8,406,951 (193)
query : 1 - 193 (193/193)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039786)
HIX0225488
HIT000690944 (
ENST00000579008
)
(WD40-repeat-containing domain containing protein.)
genome : 8,412,127 - 8,414,302 (2,176)
query : 1 - 2,176 (2,176/2,176)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, cyto 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225488)
HIX0174256
HIT000514046 (
ENST00000416112
)
(CABIT domain containing protein.)
genome : 8,486,995 - 8,513,847 (26,853)
query : 1 - 1,586 (1,586/1,586)
3 exons
identity = 0.997
5'(0.956;0.996;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, cyto 11, cyto_nucl 8.33333, cyto_pero 8,
pero 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0174256)
HIX0174253
HIT000696598 (
ENST00000584733
)
(Aldo/keto reductase subgroup family protein.)
genome : 8,545,633 - 8,546,815 (1,183)
query : 1 - 839 (839/839)
2 exons
identity = 0.995
5'(1.000;0.989)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, cyto 9.5, cyto_nucl 6, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0174253)
HIX0174253
HIT000509815 (
ENST00000411881
)
(Aldo/keto reductase family protein.)
genome : 8,545,638 - 8,546,003 (366)
query : 1 - 366 (366/366)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, cyto 7, mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0174253)
HIX0202672
HIT000264429
(
BC071600
)
(Ras-related protein Rab-12;)
genome : 8,609,435 - 8,614,502 (5,068)
query : 1 - 5,071 (5,071/5,087)
1 exon
identity = 0.998
5'(0.998)3'
coverage = 1.000
InterPro :
IPR001806 : Small GTPase superfamily
GO :
0005525 : Molecular Function : GTP binding
0007264 : Biological Process : small GTPase mediated signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13, extr 9, cyto 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202672)
HIX0202672
HIT000335961
(
BC098407
)
(Ras-related protein Rab-12;)
genome : 8,609,435 - 8,614,502 (5,068)
query : 1 - 5,071 (5,071/5,087)
1 exon
identity = 0.998
5'(0.998)3'
coverage = 1.000
InterPro :
IPR001806 : Small GTPase superfamily
GO :
0005525 : Molecular Function : GTP binding
0007264 : Biological Process : small GTPase mediated signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13, extr 9, cyto 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202672)
HIX0202672
HIT000365829 (
NM_001025300
)
(Ras-related protein Rab-12;)
genome : 8,609,443 - 8,639,380 (29,938)
query : 1 - 2,138 (2,138/2,138)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, cyto_nucl 13, mito 5, nucl 4, extr 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202672)
HIX0202672
HIT000126039 (
ENST00000329286
)
(Ras-related protein Rab-12;)
genome : 8,609,443 - 8,639,379 (29,937)
query : 1 - 2,137 (2,137/2,137)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, cyto_nucl 13, mito 5, nucl 4, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202672)
HIX0202672
HIT000099160
(
BC050338
)
Representative transcript
(Ras-related protein Rab-12;)
genome : 8,609,443 - 8,638,955 (29,513)
query : 1 - 1,711 (1,711/1,806)
6 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;0.981;1.000)3'
coverage = 1.000
InterPro :
IPR001806 : Small GTPase superfamily
IPR003579 : Small GTPase superfamily, Rab type
IPR005225 : Small GTP-binding protein domain
GO :
0005525 : Molecular Function : GTP binding
0007264 : Biological Process : small GTPase mediated signal transduction
0015031 : Biological Process : protein transport
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, cyto_nucl 13, mito 5, nucl 4, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202672)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB172696
Mus
sp. (Mouse) : AB232607
Danio
sp. (Zebrafish) : BC142846
Gallus
sp. (Chicken) : CR353886
Tetraodon
sp. (Tetraodon) : CR675762
Bos
sp. (Cow) : ENSBTAT00000013671
Oryzias
sp. (Medaka) : ENSORLT00000004874
Pongo
sp. (Orangutan) : ENSPPYT00000010517
Rattus
sp. (Rat) : ENSRNOT00000026177
Takifugu
sp. (Fugu) : SINFRUT00000156036
Pan
sp. (Chimpanzee) : XM_001140752
Monodelphis
sp. (Opossum) : XM_001364739
Equus
sp. (Horse) : XM_001487895
Canis
sp. (Dog) : XM_537327
HIX0202672
HIT000047697
(
AK127824
)
(Ras-related protein Rab-12;)
genome : 8,624,932 - 8,639,379 (14,448)
query : 121 - 1,737 (1,617/1,737)
5 exons
identity = 0.990
5'(0.985;1.000;0.989;1.000;0.988)3'
coverage = 0.931
InterPro :
IPR001806 : Small GTPase superfamily
IPR003579 : Small GTPase superfamily, Rab type
IPR005225 : Small GTP-binding protein domain
GO :
0005525 : Molecular Function : GTP binding
0007264 : Biological Process : small GTPase mediated signal transduction
0015031 : Biological Process : protein transport
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12, mito 11, cyto_nucl 8.5, extr 4, nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202672)
HIX0014320
HIT000005037
(
AK021763
)
Representative transcript
(Conserved hypothetical protein.)
genome : 8,628,930 - 8,632,280 (3,351)
query : 1 - 2,090 (2,090/2,090)
2 exons
identity = 1.000
5'(1.000;0.984)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 14, extr 8, nucl 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0014320)
HIX0202672
HIT000692897 (
ENST00000580987
)
(Ras-related protein Rab-12; Fragment;)
genome : 8,632,857 - 8,635,565 (2,709)
query : 1 - 504 (504/504)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, cyto_nucl 15.5, cyto_plas 11.8333, nucl 5.5,
mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202672)
HIX0225535
HIT000692185 (
ENST00000580267
)
(Conserved hypothetical protein.)
genome : 8,635,177 - 8,636,345 (1,169)
query : 1 - 780 (780/780)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, mito 7.5, mito_pero 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225535)
HIX0225513
HIT000691696 (
ENST00000579772
)
(Conserved hypothetical protein.)
genome : 8,688,020 - 8,688,408 (389)
query : 1 - 389 (389/389)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, extr 10
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225513)
HIX0225497
HIT000691297 (
ENST00000579368
)
(Hypothetical protein.)
genome : 8,695,854 - 8,707,619 (11,766)
query : 1 - 818 (818/818)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14, extr 13, cyto 3.5, cyto_nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225497)
HIX0019589
HIT000317225_01 (
NM_015210
)
(Protein SOGA family protein.)
genome : 8,717,369 - 8,832,775 (115,407)
query : 1 - 6,092 (6,092/6,092)
17 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17.5, cyto_nucl 14.6667, cyto 8.5, cyto_golg 8,
golg 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019589)
HIX0019589
HIT000621449 (
ENST00000522146
)
(Conserved hypothetical protein.)
genome : 8,717,374 - 8,777,975 (60,602)
query : 1 - 580 (580/580)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 24, nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019589)
HIX0019589
HIT000622406 (
ENST00000523122
)
(Conserved hypothetical protein.)
genome : 8,717,757 - 8,718,590 (834)
query : 1 - 373 (373/373)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, cyto_nucl 12, nucl 10.5, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019589)
HIX0014321
HIT000019291
(
AK094436
)
Representative transcript
(Hypothetical protein.)
genome : 8,765,374 - 8,767,754 (2,381)
query : 1 - 2,381 (2,381/2,381)
1 exon
identity = 0.998
3'(0.998)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14, cyto_nucl 13.8333, extr 9, cyto 7.5,
cyto_pero 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0014321)
HIX0019589
HIT000015558
(
AK090691
)
(Protein SOGA2; Coiled-coil domain-containing protein 165;)
genome : 8,782,086 - 8,911,650 (129,565)
query : 2 - 3,514 (3,513/3,517)
9 exons
identity = 0.974
5'(0.998;0.997;1.000;1.000;1.000;1.000)3'
coverage = 0.999
InterPro :
IPR027881 : Protein SOGA
GO :
0005615 : Cellular Component : extracellular space
0010506 : Biological Process : regulation of autophagy
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019589)
HIX0019589
HIT000619831 (
ENST00000520495
)
(Protein SOGA family protein.)
genome : 8,782,086 - 8,810,000 (27,915)
query : 1 - 3,286 (3,286/3,286)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27, cyto 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019589)
HIX0019589
HIT000623081 (
ENST00000523811
)
(Conserved hypothetical protein.)
genome : 8,784,539 - 8,785,858 (1,320)
query : 1 - 474 (474/474)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 7, pero 5, extr_plas 5, plas 4.5, extr 4.5,
mito_pero 4.5, cyto_golg 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019589)
HIX0019589
HIT000426696
(
AK307830
)
(Conserved hypothetical protein.)
genome : 8,784,656 - 8,787,301 (2,646)
query : 2 - 1,557 (1,556/1,557)
2 exons
identity = 0.997
5'(1.000;0.996)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14, nucl 12, cyto 12, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019589)
HIX0019589
HIT000616951 (
ENST00000517554
)
(Conserved hypothetical protein.)
genome : 8,784,656 - 8,787,301 (2,646)
query : 1 - 1,554 (1,554/1,554)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto_nucl 11.5, cyto 9.5, nucl 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019589)
HIX0019589
HIT000620340 (
ENST00000521018
)
(Conserved hypothetical protein.)
genome : 8,784,672 - 8,787,342 (2,671)
query : 1 - 577 (577/577)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15, nucl 14.5, cyto 10.5, extr 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019589)
HIX0019589
HIT000052424
(
BC040542
)
Representative transcript
(Protein SOGA2; Coiled-coil domain-containing protein 165;)
genome : 8,789,672 - 8,832,776 (43,105)
query : 1 - 3,963 (3,963/3,978)
10 exons
identity = 0.999
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR027882 : Domain of unknown function DUF4482
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19.5, cyto_nucl 16.5, cyto 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019589)
HIX0019589
HIT000618185 (
ENST00000518815
)
(Domain of unknown function DUF4482 domain containing protein.)
genome : 8,789,672 - 8,832,776 (43,105)
query : 1 - 3,963 (3,963/3,963)
10 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19.5, cyto_nucl 16.5, cyto 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019589)
HIX0225810
HIT000117316 (
ENST00000306329
)
(Protein SOGA2; Coiled-coil domain-containing protein 165;)
genome : 8,705,659 - 8,828,944 (123,286)
query : 1 - 5,718 (5,718/5,718)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24.5, cyto_nucl 16.8333, cyto 6, cyto_golg 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225810)
HIX0225810
HIT000000527
(
AB018345
)
(Protein SOGA2.)
genome : 8,707,409 - 8,832,775 (125,367)
query : 1 - 6,009 (6,009/6,009)
15 exons
identity = 0.999
5'(1.000;1.000;0.994;1.000;0.998;1.000;1.000;
0.995)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto_nucl 14.6667, cyto 8, cyto_golg 7.66667
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225810)
HIX0225810
HIT000616967 (
ENST00000517570
)
(Protein SOGA2.)
genome : 8,707,409 - 8,832,775 (125,367)
query : 1 - 6,009 (6,009/6,009)
15 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, cyto_nucl 14.1667, cyto 8, cyto_golg 7.66667,
golg 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225810)
HIX0225810
HIT000313331 (
ENST00000359865
)
(Protein SOGA2.)
genome : 8,717,369 - 8,832,776 (115,408)
query : 1 - 6,093 (6,093/6,093)
17 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17.5, cyto_nucl 14.6667, cyto 8.5, cyto_golg 8,
golg 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225810)
HIX0225810
HIT000117295 (
ENST00000306285
)
(Protein SOGA2.)
genome : 8,717,369 - 8,832,775 (115,407)
query : 1 - 6,065 (6,065/6,065)
17 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19.5, cyto_nucl 15.1667, cyto 7.5, cyto_golg 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225810)
HIX0225810
HIT000483051 (
ENST00000400050
)
(Protein SOGA2.)
genome : 8,717,369 - 8,832,775 (115,407)
query : 1 - 5,969 (5,969/5,969)
16 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, cyto_nucl 14.1667, cyto 8, cyto_golg 7.66667,
golg 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225810)
HIX0225810
HIT000249816
(
AK131528
)
Representative transcript
(Protein SOGA2.)
genome : 8,717,369 - 8,832,074 (114,706)
query : 1 - 5,391 (5,391/5,392)
17 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;0.998;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR027881 : Protein SOGA
IPR027882 : Domain of unknown function DUF4482
GO :
0005615 : Cellular Component : extracellular space
0010506 : Biological Process : regulation of autophagy
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17.5, cyto_nucl 14.6667, cyto 8.5, cyto_golg 8,
golg 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225810)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK147631
Gallus
sp. (Chicken) : CR524285
Macaca
sp. (Macaque) : ENSMMUT00000022121
Monodelphis
sp. (Opossum) : ENSMODT00000027283
Oryzias
sp. (Medaka) : ENSORLT00000004893
Pongo
sp. (Orangutan) : ENSPPYT00000010516
Rattus
sp. (Rat) : ENSRNOT00000033832
Takifugu
sp. (Fugu) : SINFRUT00000156030
Pan
sp. (Chimpanzee) : XM_001140422
Equus
sp. (Horse) : XM_001488953
Canis
sp. (Dog) : XM_547667
Bos
sp. (Cow) : XM_581047
HIX0195616
pHIT000030734 ( pHIT000030734 )
Representative transcript
(Hypothetical protein.)
genome : 7,586,202 - 7,657,332 (71,131)
query : 1 - 1,215 (1,215/1,215)
6 exons
SOSUI :
SOLUBLE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0195616)
CAGE tag :
H08BA03O0106,H08BA53A0802,H08BA53C0708
H10BA12I1605,H15BA64E1103
HIX0195792
pHIT000118080 ( pHIT000118080 )
Representative transcript
(Hypothetical protein.)
genome : 7,808,165 - 7,810,231 (2,067)
query : 1 - 309 (309/309)
3 exons
SOSUI :
SOLUBLE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0195792)
CAGE tag :
T18F0076144B
AP005062.2
7200001-7205359 F +
NCBI
AP005270.2
7205360-7376872 F +
NCBI
AP001095.5
7376873-7513905 F +
NCBI
AP001091.5
7513906-7709959 F +
NCBI
AP000897.6
7709960-7829314 F +
NCBI
AP005118.2
7829315-7956899 F +
NCBI
AP005900.1
7956900-8122062 F +
NCBI
AC006566.2
8122063-8223973 F -
NCBI
AP005227.3
8223974-8315978 F +
NCBI
AP001094.6
8315979-8472855 F +
NCBI
AP001793.5
8472856-8654909 F +
NCBI
AP000864.4
8654910-8800000 F +
NCBI