bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0039831
HIT000096248
(
BC040589
)
Representative transcript
(Conserved hypothetical protein.)
genome : 1,509,125 - 1,873,585 (364,461)
query : 1 - 2,026 (2,026/2,056)
4 exons
identity = 0.979
5'(0.980;0.986;0.639;0.995)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 21, extr 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039831)
HIX0039831
HIT000695044 (
ENST00000583163
)
(Conserved hypothetical protein.)
genome : 1,509,184 - 1,647,098 (137,915)
query : 1 - 826 (826/826)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, cyto_nucl 4, nucl 2.5, cyto 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039831)
HIX0225538
HIT000692439 (
ENST00000580524
)
(Hypothetical short protein.)
genome : 1,655,178 - 1,779,956 (124,779)
query : 1 - 505 (505/505)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, cyto 6, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225538)
HIX0225629
HIT000695705 (
ENST00000583827
)
(Hypothetical short protein.)
genome : 1,780,330 - 1,782,065 (1,736)
query : 1 - 574 (574/574)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225629)
HIX0225353
HIT000696930 (
ENST00000585072
)
(Hypothetical short protein.)
genome : 1,883,525 - 1,906,651 (23,127)
query : 1 - 679 (679/679)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, mito 7, nucl 5, cyto_nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225353)
HIX0225353
HIT000696730 (
ENST00000584867
)
(Hypothetical short protein.)
genome : 1,883,705 - 2,240,847 (357,143)
query : 1 - 758 (758/758)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, mito 7, nucl 5, cyto_nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225353)
HIX0225599
HIT000694536 (
ENST00000582646
)
(Axin interactor, dorsalization-associated protein, N-terminal domain containing protein.)
genome : 1,927,728 - 1,929,095 (1,368)
query : 1 - 997 (997/997)
2 exons
identity = 0.998
3'(1.000;0.996)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto 11
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225599)
HIX0225353
HIT000691032 (
ENST00000579097
)
(Hypothetical short protein.)
genome : 2,034,680 - 2,239,880 (205,201)
query : 1 - 779 (779/779)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, cysk 4, nucl 3, cyto 3, cyto_nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225353)
HIX0225353
HIT000693984 (
ENST00000582086
)
(Hypothetical short protein.)
genome : 2,034,824 - 2,111,737 (76,914)
query : 1 - 584 (584/584)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, cysk 4, nucl 3, cyto 3, cyto_nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225353)
HIX0014296
HIT000008468
(
AK025194
)
Representative transcript
(Conserved hypothetical protein.)
genome : 2,517,269 - 2,519,259 (1,991)
query : 1 - 1,926 (1,926/1,957)
2 exons
identity = 0.992
3'(0.992;0.992)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, mito 5, cyto_pero 2.83333, mito_nucl 2.83333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0014296)
HIX0014297
HIT000056020
(
BX647373
)
(Methyltransferase-like protein 4.)
genome : 2,537,529 - 2,567,612 (30,084)
query : 1 - 5,188 (5,188/5,365)
7 exons
identity = 0.998
3'(0.997;1.000;1.000;0.994;0.999;1.000;0.999)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15, cyto 11, extr 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0014297)
HIX0014297
HIT000208906 (
NM_022840
)
(Methyltransferase-like protein 4; EC=2.1.1.-;)
genome : 2,537,524 - 2,571,489 (33,966)
query : 1 - 3,674 (3,674/3,691)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.1.1.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, cyto 12
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0014297)
HIX0014297
HIT000122229 (
ENST00000319888
)
(Methyltransferase-like protein 4.)
genome : 2,537,524 - 2,571,508 (33,985)
query : 1 - 3,601 (3,601/3,601)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16, cyto 13
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0014297)
HIX0014297
HIT000685649 (
ENST00000573134
)
(Methyltransferase-like protein 4.)
genome : 2,537,529 - 2,567,612 (30,084)
query : 1 - 5,190 (5,190/5,190)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15, cyto 11, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0014297)
HIX0014297
HIT000005858
(
AK022584
)
(Methyltransferase-like protein 4.)
genome : 2,537,530 - 2,554,691 (17,162)
query : 1 - 1,884 (1,884/1,884)
4 exons
identity = 0.998
3'(0.998;0.994;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR002052 : DNA methylase, N-6 adenine-specific, conserved site
IPR007757 : MT-A70-like
IPR029063 : S-adenosyl-L-methionine-dependent methyltransferase
GO :
0003676 : Molecular Function : nucleic acid binding
0006139 : Biological Process : nucleobase-containing compound metabolic process
0008168 : Molecular Function : methyltransferase activity
0032259 : Biological Process : methylation
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, cyto_nucl 16, cyto_plas 12.8333, extr 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0014297)
HIX0014297
HIT000688336 (
ENST00000576251
)
(Methyltransferase-like protein 4.)
genome : 2,537,530 - 2,554,691 (17,162)
query : 1 - 1,884 (1,884/1,884)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
plas 14.5, extr_plas 13.5, extr 11.5, mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0014297)
HIX0014297
HIT000009944
(
AK026670
)
(Methyltransferase-like protein 4.)
genome : 2,538,137 - 2,563,847 (25,711)
query : 1 - 1,875 (1,875/1,908)
7 exons
identity = 0.997
3'(0.996;1.000;1.000;0.994;1.000;1.000;0.981)5'
coverage = 1.000
InterPro :
IPR002052 : DNA methylase, N-6 adenine-specific, conserved site
IPR007757 : MT-A70-like
IPR029063 : S-adenosyl-L-methionine-dependent methyltransferase
GO :
0003676 : Molecular Function : nucleic acid binding
0006139 : Biological Process : nucleobase-containing compound metabolic process
0008168 : Molecular Function : methyltransferase activity
0032259 : Biological Process : methylation
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, cyto_nucl 17, nucl 10
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0014297)
HIX0014297
HIT000029026
(
AL834296
)
(Methyltransferase-like protein 4.)
genome : 2,538,137 - 2,554,815 (16,679)
query : 1 - 1,600 (1,600/1,616)
6 exons
identity = 0.998
3'(0.997;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR002052 : DNA methylase, N-6 adenine-specific, conserved site
IPR007757 : MT-A70-like
IPR029063 : S-adenosyl-L-methionine-dependent methyltransferase
GO :
0003676 : Molecular Function : nucleic acid binding
0006139 : Biological Process : nucleobase-containing compound metabolic process
0008168 : Molecular Function : methyltransferase activity
0032259 : Biological Process : methylation
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 22, mito 5, pero 3, mito_nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0014297)
HIX0014297
HIT000686860 (
ENST00000574538
)
(Methyltransferase-like protein 4; EC=2.1.1.-;)
genome : 2,538,452 - 2,571,485 (33,034)
query : 1 - 2,742 (2,742/2,742)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.1.1.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, cyto 12
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0014297)
HIX0014297
HIT000500757
(
BC136766
)
Representative transcript
(Methyltransferase-like protein 4; EC=2.1.1.-;)
genome : 2,538,452 - 2,571,248 (32,797)
query : 1 - 2,506 (2,506/2,506)
9 exons
identity = 0.997
3'(0.996;1.000;1.000;0.994;1.000;1.000;1.000;
1.000;0.970)5'
coverage = 1.000
EC number :
EC 2.1.1.-
InterPro :
IPR002052 : DNA methylase, N-6 adenine-specific, conserved site
IPR007757 : MT-A70-like
IPR029063 : S-adenosyl-L-methionine-dependent methyltransferase
GO :
0003676 : Molecular Function : nucleic acid binding
0006139 : Biological Process : nucleobase-containing compound metabolic process
0008168 : Molecular Function : methyltransferase activity
0032259 : Biological Process : methylation
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, cyto 12
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0014297)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB046105
Mus
sp. (Mouse) : AK157268
Gallus
sp. (Chicken) : BX929408
Equus
sp. (Horse) : ENSECAT00000006464
Oryzias
sp. (Medaka) : ENSORLT00000014061
Pongo
sp. (Orangutan) : ENSPPYT00000010548
Tetraodon
sp. (Tetraodon) : GSTENT00031779001
Takifugu
sp. (Fugu) : SINFRUT00000142430
Rattus
sp. (Rat) : XM_001056749
Monodelphis
sp. (Opossum) : XM_001368669
Pan
sp. (Chimpanzee) : XM_523876
Canis
sp. (Dog) : XM_547656
Bos
sp. (Cow) : XM_599482
Danio
sp. (Zebrafish) : XM_684086
HIX0014297
HIT000500758
(
BC136767
)
(Methyltransferase-like protein 4; EC=2.1.1.-;)
genome : 2,538,452 - 2,571,248 (32,797)
query : 1 - 2,506 (2,506/2,506)
9 exons
identity = 0.997
3'(0.997;1.000;1.000;0.994;1.000;1.000;1.000;
0.999;0.970)5'
coverage = 1.000
EC number :
EC 2.1.1.-
InterPro :
IPR002052 : DNA methylase, N-6 adenine-specific, conserved site
IPR007757 : MT-A70-like
IPR029063 : S-adenosyl-L-methionine-dependent methyltransferase
GO :
0003676 : Molecular Function : nucleic acid binding
0006139 : Biological Process : nucleobase-containing compound metabolic process
0008168 : Molecular Function : methyltransferase activity
0032259 : Biological Process : methylation
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, cyto 12
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0014297)
HIX0014297
HIT000339843
(
BC111020
)
(Methyltransferase-like protein 4; EC=2.1.1.-;)
genome : 2,538,956 - 2,571,485 (32,530)
query : 1 - 2,238 (2,238/2,287)
9 exons
identity = 0.999
3'(0.995;1.000;1.000;0.994;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.1.1.-
InterPro :
IPR002052 : DNA methylase, N-6 adenine-specific, conserved site
IPR007757 : MT-A70-like
IPR029063 : S-adenosyl-L-methionine-dependent methyltransferase
GO :
0003676 : Molecular Function : nucleic acid binding
0006139 : Biological Process : nucleobase-containing compound metabolic process
0008168 : Molecular Function : methyltransferase activity
0032259 : Biological Process : methylation
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, cyto 12
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0014297)
HIX0014297
HIT000054155
(
BC056270
)
(Methyltransferase-like protein 4.)
genome : 2,538,956 - 2,566,858 (27,903)
query : 3 - 1,107 (1,105/1,135)
8 exons
identity = 0.997
3'(0.989;1.000;1.000;0.994;1.000;1.000;1.000;
1.000)5'
coverage = 0.998
InterPro :
IPR002052 : DNA methylase, N-6 adenine-specific, conserved site
IPR007757 : MT-A70-like
IPR029063 : S-adenosyl-L-methionine-dependent methyltransferase
GO :
0003676 : Molecular Function : nucleic acid binding
0006139 : Biological Process : nucleobase-containing compound metabolic process
0008168 : Molecular Function : methyltransferase activity
0032259 : Biological Process : methylation
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 14.5, nucl 8.5, mito 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0014297)
HIX0014297
HIT000422798
(
AK290001
)
(Methyltransferase-like protein 4; EC=2.1.1.-;)
genome : 2,538,965 - 2,571,423 (32,459)
query : 1 - 2,167 (2,167/2,167)
9 exons
identity = 0.994
3'(0.994;1.000;1.000;0.994;0.986;0.995;1.000;
0.999;0.975)5'
coverage = 1.000
EC number :
EC 2.1.1.-
InterPro :
IPR002052 : DNA methylase, N-6 adenine-specific, conserved site
IPR007757 : MT-A70-like
IPR029063 : S-adenosyl-L-methionine-dependent methyltransferase
GO :
0003676 : Molecular Function : nucleic acid binding
0006139 : Biological Process : nucleobase-containing compound metabolic process
0008168 : Molecular Function : methyltransferase activity
0032259 : Biological Process : methylation
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, cyto 12
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0014297)
HIX0014297
HIT000689123 (
ENST00000577166
)
(Methyltransferase-like protein 4.)
genome : 2,554,785 - 2,571,232 (16,448)
query : 1 - 544 (544/544)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, cyto_nucl 15.5, nucl 9, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0014297)
HIX0174286
HIT000557250 (
ENST00000459316
)
(Non-protein coding transcript.)
genome : 2,555,357 - 2,555,491 (135)
query : 1 - 135 (135/135)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0174286)
HIX0225615
HIT000695134 (
ENST00000583253
)
(Conserved hypothetical protein.)
genome : 2,561,171 - 2,562,219 (1,049)
query : 1 - 1,049 (1,049/1,049)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, mito 5.5, cyto_mito 5, cyto 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225615)
HIX0014297
HIT000686981 (
ENST00000574676
)
(Methyltransferase-like protein 4.)
genome : 2,567,006 - 2,571,470 (4,465)
query : 1 - 613 (613/613)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto_nucl 9, nucl 7.5, cyto 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0014297)
HIX0225511
HIT000691689 (
ENST00000579765
)
(Ubiquitin-conjugating enzyme/RWD-like domain containing protein.)
genome : 2,568,391 - 2,569,121 (731)
query : 1 - 429 (429/429)
2 exons
identity = 0.995
5'(1.000;0.994)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, extr 13, cyto_nucl 9.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225511)
HIX0027354
HIT000202724 (
NM_006101
)
(Kinetochore protein NDC80 homolog; Highly expressed in cancer protein; Kinetochore protein Hec1; HsHec1; Kinetochore-associated protein 2; Retinoblastoma-associated protein HEC;)
genome : 2,571,510 - 2,616,634 (45,125)
query : 1 - 2,172 (2,172/2,209)
17 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 15, cyto 6.5, cyto_nucl 6.5, nucl 5.5, pero 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027354)
HIX0027354
HIT000108039 (
ENST00000261597
)
(Kinetochore protein NDC80 homolog; Highly expressed in cancer protein; Kinetochore protein Hec1; HsHec1; Kinetochore-associated protein 2; Retinoblastoma-associated protein HEC;)
genome : 2,571,510 - 2,616,634 (45,125)
query : 1 - 2,172 (2,172/2,172)
17 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 15, cyto 6.5, cyto_nucl 6.5, nucl 5.5, pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027354)
HIX0027354
HIT000086495
(
BC005239
)
(Kinetochore protein NDC80 homolog.)
genome : 2,571,540 - 2,606,496 (34,957)
query : 1 - 1,699 (1,699/1,726)
14 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;0.994;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR005550 : Kinetochore protein Ndc80
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 12, mito 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027354)
HIX0027354
HIT000422193
(
AK289396
)
Representative transcript
(Kinetochore protein NDC80 homolog; Highly expressed in cancer protein; Kinetochore protein Hec1; HsHec1; Kinetochore-associated protein 2; Retinoblastoma-associated protein HEC;)
genome : 2,571,556 - 2,616,633 (45,078)
query : 1 - 2,125 (2,125/2,125)
17 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR005550 : Kinetochore protein Ndc80
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 15, cyto 6.5, cyto_nucl 6.5, nucl 5.5, pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027354)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB169360
Mus
sp. (Mouse) : AF326730
Gallus
sp. (Chicken) : AJ719646
Mus
sp. (Mouse) : AK132724
Danio
sp. (Zebrafish) : AY648762
Oryzias
sp. (Medaka) : ENSORLT00000006881
Pongo
sp. (Orangutan) : ENSPPYT00000010547
Rattus
sp. (Rat) : ENSRNOT00000018644
Tetraodon
sp. (Tetraodon) : GSTENT00029380001
Takifugu
sp. (Fugu) : SINFRUT00000132722
Pan
sp. (Chimpanzee) : XM_001146732
Monodelphis
sp. (Opossum) : XM_001363497
Equus
sp. (Horse) : XM_001492535
Canis
sp. (Dog) : XM_537313
Bos
sp. (Cow) : XM_582722
HIX0027354
HIT000432050
(
AK313184
)
(Kinetochore protein NDC80 homolog; Highly expressed in cancer protein; Kinetochore protein Hec1; HsHec1; Kinetochore-associated protein 2; Retinoblastoma-associated protein HEC;)
genome : 2,571,559 - 2,616,573 (45,015)
query : 2 - 2,063 (2,062/2,063)
17 exons
identity = 0.999
5'(1.000;0.991;1.000;1.000;0.994;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR005550 : Kinetochore protein Ndc80
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 15, cyto 6.5, cyto_nucl 6.5, nucl 5.5, pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027354)
HIX0027354
HIT000687708 (
ENST00000575515
)
(Kinetochore protein NDC80 homolog.)
genome : 2,571,564 - 2,577,868 (6,305)
query : 1 - 553 (553/553)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 10, mito 9, cyto 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027354)
HIX0027354
HIT000051441
(
BC035617
)
(Kinetochore protein NDC80 homolog; Highly expressed in cancer protein; Kinetochore protein Hec1; HsHec1; Kinetochore-associated protein 2; Retinoblastoma-associated protein HEC;)
genome : 2,571,579 - 2,616,634 (45,056)
query : 1 - 2,103 (2,103/2,140)
17 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR005550 : Kinetochore protein Ndc80
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 15, cyto 6.5, cyto_nucl 6.5, nucl 5.5, pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027354)
HIX0027354
HIT000050539
(
BC010171
)
(Kinetochore protein NDC80 homolog.)
genome : 2,571,582 - 2,589,290 (17,709)
query : 1 - 961 (961/978)
9 exons
identity = 0.999
5'(1.000;1.000;1.000;0.992;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR005550 : Kinetochore protein Ndc80
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto_nucl 17.5, cyto 15.5, nucl 14.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027354)
HIX0027354
HIT000062445
(
AF017790
)
(Kinetochore protein NDC80 homolog; Highly expressed in cancer protein; Kinetochore protein Hec1; HsHec1; Kinetochore-associated protein 2; Retinoblastoma-associated protein HEC;)
genome : 2,571,605 - 2,616,627 (45,023)
query : 18 - 2,087 (2,070/2,150)
17 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 0.992
InterPro :
IPR005550 : Kinetochore protein Ndc80
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 15, cyto 6.5, cyto_nucl 6.5, nucl 5.5, pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027354)
HIX0027354
HIT000688357 (
ENST00000576274
)
(Kinetochore protein NDC80 homolog.)
genome : 2,577,963 - 2,582,525 (4,563)
query : 16 - 722 (707/722)
3 exons
identity = 0.999
5'(0.994;1.000;1.000)3'
coverage = 0.979
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 22, extr_plas 14.5, extr 5, cyto 2, mito 2,
cyto_mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027354)
HIX0027354
HIT000686885 (
ENST00000574567
)
(Kinetochore protein NDC80 homolog.)
genome : 2,578,925 - 2,579,195 (271)
query : 19 - 289 (271/289)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 0.938
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 21, extr 7, pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027354)
HIX0174276
HIT000541409 (
ENST00000443475
)
(Conserved hypothetical protein.)
genome : 2,593,673 - 2,594,912 (1,240)
query : 1 - 909 (909/909)
2 exons
identity = 0.998
3'(0.991;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, cyto_nucl 13.5, extr 8, nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0174276)
HIX0027354
HIT000686478 (
ENST00000574096
)
(Kinetochore protein NDC80 homolog.)
genome : 2,610,780 - 2,615,313 (4,534)
query : 1 - 442 (442/442)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027354)
HIX0039807
HIT000089567
(
BC018088
)
Representative transcript
(Conserved hypothetical protein.)
genome : 2,652,169 - 2,653,185 (1,017)
query : 1 - 1,017 (1,017/1,033)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, nucl 14, cyto 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039807)
Ortholog candidate ( ->
Evola
)
Bos
sp. (Cow) : XM_871160
HIX0039807
HIT000658937 (
NR_033754
)
(Chromo shadow domain containing protein.)
genome : 2,652,169 - 2,655,394 (3,226)
query : 1 - 1,429 (1,429/1,429)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto 14
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039807)
HIX0039807
HIT000691572 (
ENST00000579647
)
(Chromo shadow domain containing protein.)
genome : 2,652,169 - 2,655,394 (3,226)
query : 1 - 1,429 (1,429/1,429)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto 14
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039807)
HIX0039807
HIT000695246 (
ENST00000583365
)
(Chromo shadow domain containing protein.)
genome : 2,652,724 - 2,653,258 (535)
query : 1 - 535 (535/535)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto 14
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039807)
HIX0039807
HIT000708882 (
ENST00000597101
)
(Non-protein coding transcript.)
genome : 2,653,094 - 2,653,183 (90)
query : 1 - 90 (90/90)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039807)
HIX0014298
HIT000122592 (
ENST00000320876
)
(Structural maintenance of chromosomes flexible hinge domain-containing protein 1; SMC hinge domain-containing protein 1;)
genome : 2,655,737 - 2,805,015 (149,279)
query : 1 - 8,821 (8,821/8,821)
48 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, cyto_nucl 15.8333, nucl 14.5,
cyto_mito 8.83333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0014298)
HIX0014298
eHIT000008359 ( ESTsASS_18_213 )
(Non-protein coding transcript.)
genome : 2,655,737 - 2,697,868 (42,132)
query : 1 - 1,509 (1,509/1,509)
10 exons
ESTs assembly
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0014298)
ESTs used for assembly :
EH354954,AA336927,AA336502,CN365983
AI904014,AI904018,DW440792,BU623449
DR005791
HIX0014298
HIT000486195 (
NM_015295
)
(Structural maintenance of chromosomes flexible hinge domain-containing protein 1; SMC hinge domain-containing protein 1;)
genome : 2,655,886 - 2,805,015 (149,130)
query : 1 - 8,672 (8,672/8,672)
48 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, cyto_nucl 15.8333, nucl 14.5,
cyto_mito 8.83333
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0014298)
HIX0014298
HIT000108040 (
ENST00000261598
)
(Structural maintenance of chromosomes flexible hinge domain-containing protein 1; SMC hinge domain-containing protein 1;)
genome : 2,655,886 - 2,784,877 (128,992)
query : 1 - 5,943 (5,943/5,943)
46 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, cyto_nucl 15.3333, nucl 13.5,
cyto_mito 8.83333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0014298)
HIX0014298
HIT000086579
(
BC006008
)
(Structural maintenance of chromosomes flexible hinge domain-containing protein 1; SMC hinge domain-containing protein 1;)
genome : 2,655,886 - 2,688,695 (32,810)
query : 1 - 1,012 (1,012/1,040)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR003594 : Histidine kinase-like ATPase, C-terminal domain
GO :
0005524 : Molecular Function : ATP binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto 6, extr 3, cyto_mito 3, cyto_pero 3,
cyto_golg 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0014298)
HIX0225622
HIT000695427 (
ENST00000583546
)
(Conserved hypothetical protein.)
genome : 2,688,562 - 2,832,921 (144,360)
query : 1 - 690 (690/690)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto 8, cyto_nucl 8, nucl 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225622)
HIX0014298
HIT000693133 (
ENST00000581226
)
(Structural maintenance of chromosomes flexible hinge domain-containing protein 1;)
genome : 2,688,639 - 2,697,214 (8,576)
query : 1 - 459 (459/459)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, extr 6, nucl 3, pero 3, extr_plas 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0014298)
HIX0014298
HIT000697087 (
ENST00000585229
)
(Structural maintenance of chromosomes flexible hinge domain-containing protein 1; SMC hinge domain-containing protein 1;)
genome : 2,700,775 - 2,702,290 (1,516)
query : 1 - 555 (555/555)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 16, cyto_plas 12.1667, nucl 5,
extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0014298)
HIX0014298
HIT000306223
(
CR627458
)
Representative transcript
(Structural maintenance of chromosomes flexible hinge domain-containing protein 1; SMC hinge domain-containing protein 1;)
genome : 2,700,857 - 2,802,925 (102,069)
query : 1 - 4,948 (4,948/4,968)
38 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.986;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.994;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.993;
0.994;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 17, mito 5, pero 4, plas 3, E.R._mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0014298)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : BC076627
Gallus
sp. (Chicken) : BX950644
Monodelphis
sp. (Opossum) : ENSMODT00000027304
Oryzias
sp. (Medaka) : ENSORLT00000014124
Pongo
sp. (Orangutan) : ENSPPYT00000010545
Rattus
sp. (Rat) : XM_001056555
Equus
sp. (Horse) : XM_001915826
Pan
sp. (Chimpanzee) : XM_512045
Canis
sp. (Dog) : XM_547657
HIX0014298
HIT000689830 (
ENST00000577880
)
(Structural maintenance of chromosomes flexible hinge domain-containing protein 1; SMC hinge domain-containing protein 1;)
genome : 2,700,857 - 2,802,927 (102,071)
query : 1 - 4,951 (4,951/4,951)
38 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 18.5, cyto 17.5, nucl 14.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0014298)
HIX0014298
HIT000689255 (
ENST00000577300
)
(Structural maintenance of chromosomes flexible hinge domain-containing protein 1; SMC hinge domain-containing protein 1;)
genome : 2,703,692 - 2,706,560 (2,869)
query : 1 - 506 (506/506)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 16.1667, cyto_plas 10.8333,
nucl 7.5, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0014298)
HIX0014298
HIT000046197
(
AK126324
)
(Structural maintenance of chromosomes flexible hinge domain-containing protein 1; SMC hinge domain-containing protein 1;)
genome : 2,706,441 - 2,802,926 (96,486)
query : 1 - 4,143 (4,143/4,143)
32 exons
identity = 0.999
5'(1.000;0.988;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.992;1.000;
1.000;1.000;0.994;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.992;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17, cyto_nucl 6, extr 5, nucl 4.5, cyto 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0014298)
HIX0014298
HIT000696760 (
ENST00000584897
)
(Structural maintenance of chromosomes flexible hinge domain-containing protein 1; SMC hinge domain-containing protein 1;)
genome : 2,706,441 - 2,802,926 (96,486)
query : 1 - 4,143 (4,143/4,143)
32 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23.5, cyto_nucl 16, nucl 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0014298)
HIX0014298
HIT000693613 (
ENST00000581711
)
(Structural maintenance of chromosomes flexible hinge domain-containing protein 1; SMC hinge domain-containing protein 1;)
genome : 2,707,442 - 2,722,548 (15,107)
query : 1 - 546 (546/546)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 24, mito 3, E.R. 2, cyto_mito 2, mito_pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0014298)
HIX0014298
HIT000693289 (
ENST00000581383
)
(Structural maintenance of chromosomes flexible hinge domain-containing protein 1; SMC hinge domain-containing protein 1;)
genome : 2,724,900 - 2,727,161 (2,262)
query : 1 - 806 (806/806)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, cyto_nucl 11, extr 9, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0014298)
HIX0014298
HIT000693534 (
ENST00000581631
)
(Structural maintenance of chromosomes flexible hinge domain-containing protein 1; SMC hinge domain-containing protein 1;)
genome : 2,728,412 - 2,739,463 (11,052)
query : 1 - 729 (729/729)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 9.5, mito 9, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0014298)
HIX0014298
HIT000000375
(
AB014550
)
(Structural maintenance of chromosomes flexible hinge domain-containing protein 1; SMC hinge domain-containing protein 1;)
genome : 2,739,474 - 2,805,009 (65,536)
query : 1 - 5,003 (5,003/5,003)
22 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21.5, cyto_nucl 15.5, nucl 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0014298)
HIX0014298
HIT000024259
(
AL080138
)
(Structural maintenance of chromosomes flexible hinge domain-containing protein 1; SMC hinge domain-containing protein 1;)
genome : 2,747,551 - 2,803,606 (56,056)
query : 2 - 3,245 (3,244/3,278)
19 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.993;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR010935 : SMCs flexible hinge
GO :
0005515 : Molecular Function : protein binding
0005524 : Molecular Function : ATP binding
0005694 : Cellular Component : chromosome
0051276 : Biological Process : chromosome organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, cyto_nucl 16, nucl 11
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0014298)
HIX0014298
HIT000695322 (
ENST00000583441
)
(Conserved hypothetical protein.)
genome : 2,752,486 - 2,753,127 (642)
query : 16 - 657 (642/657)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 0.977
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, mito 8, cyto 7, nucl 2, golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0014298)
HIX0014298
HIT000695225 (
ENST00000583344
)
(Structural maintenance of chromosomes flexible hinge domain-containing protein 1; SMC hinge domain-containing protein 1;)
genome : 2,760,399 - 2,769,805 (9,407)
query : 1 - 738 (738/738)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 22.5, cyto_nucl 15.5, nucl 3.5, E.R._mito 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0014298)
HIX0014298
HIT000008920
(
AK025646
)
(Structural maintenance of chromosomes flexible hinge domain-containing protein 1; SMC hinge domain-containing protein 1;)
genome : 2,771,583 - 2,803,604 (32,022)
query : 1 - 2,058 (2,058/2,099)
9 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.996)3'
coverage = 0.999
InterPro :
IPR010935 : SMCs flexible hinge
GO :
0005515 : Molecular Function : protein binding
0005524 : Molecular Function : ATP binding
0005694 : Cellular Component : chromosome
0051276 : Biological Process : chromosome organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, nucl 11
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0014298)
HIX0014298
HIT000051505
(
BC035774
)
(Structural maintenance of chromosomes flexible hinge domain-containing protein 1; SMC hinge domain-containing protein 1;)
genome : 2,772,290 - 2,803,606 (31,317)
query : 12 - 1,992 (1,981/2,040)
8 exons
identity = 0.998
5'(1.000;0.995;1.000;1.000;1.000;1.000;1.000;
0.998)3'
coverage = 0.994
InterPro :
IPR010935 : SMCs flexible hinge
GO :
0005515 : Molecular Function : protein binding
0005524 : Molecular Function : ATP binding
0005694 : Cellular Component : chromosome
0051276 : Biological Process : chromosome organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, nucl 11
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0014298)
HIX0039802
HIT000086410
(
BC004890
)
Representative transcript
(Conserved hypothetical protein.)
genome : 2,778,280 - 2,780,237 (1,958)
query : 11 - 1,968 (1,958/1,996)
1 exon
identity = 0.998
5'(0.998)3'
coverage = 0.995
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039802)
HIX0014298
HIT000695678 (
ENST00000583800
)
(Structural maintenance of chromosomes flexible hinge domain-containing protein 1; SMC hinge domain-containing protein 1;)
genome : 2,796,403 - 2,801,261 (4,859)
query : 8 - 865 (858/865)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 0.992
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, extr 12
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0014298)
HIX0021047
HIT000106644 (
ENST00000254528
)
(EMILIN-2; Elastin microfibril interface-located protein 2; Elastin microfibril interfacer 2; Protein FOAP-10; Precursor;)
genome : 2,847,028 - 2,915,991 (68,964)
query : 1 - 5,910 (5,910/5,910)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 12, mito 8, lyso 6, extr_plas 6, cyto_mito 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021047)
HIX0021047
HIT000075770
(
AF270513
)
(EMILIN-2; Elastin microfibril interface-located protein 2; Elastin microfibril interfacer 2; Protein FOAP-10; Precursor;)
genome : 2,847,028 - 2,914,090 (67,063)
query : 1 - 4,009 (4,009/4,009)
8 exons
identity = 0.999
5'(0.993;1.000;0.994;0.999;1.000;1.000;0.992;
1.000)3'
coverage = 1.000
InterPro :
IPR001073 : Complement C1q protein
IPR008983 : Tumour necrosis factor-like domain
IPR011489 : EMI domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 12, mito 8, lyso 6, extr_plas 6, cyto_mito 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021047)
HIX0021047
HIT000210367 (
NM_032048
)
(EMILIN-2; Elastin microfibril interface-located protein 2; Elastin microfibril interfacer 2; Protein FOAP-10; Precursor;)
genome : 2,847,028 - 2,914,090 (67,063)
query : 1 - 4,009 (4,009/4,009)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 12, mito 8, lyso 6, extr_plas 6, cyto_mito 5.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021047)
HIX0021047
HIT000092588
(
BC032231
)
(EMILIN-2 precursor.)
genome : 2,847,041 - 2,914,064 (67,024)
query : 1 - 1,656 (1,656/1,686)
5 exons
identity = 0.987
5'(1.000;1.000;0.983;0.906;0.998)3'
coverage = 1.000
InterPro :
IPR001073 : Complement C1q protein
IPR008983 : Tumour necrosis factor-like domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 10, nucl 9.5, cyto_nucl 8, cyto 5.5, extr 5,
E.R._mito 5, mito_pero 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021047)
HIX0021047
HIT000500555
(
BC136541
)
Representative transcript
(EMILIN-2; Elastin microfibril interface-located protein 2; Elastin microfibril interfacer 2; Protein FOAP-10; Precursor;)
genome : 2,847,074 - 2,914,001 (66,928)
query : 1 - 3,874 (3,874/3,874)
8 exons
identity = 0.999
5'(1.000;1.000;0.994;1.000;0.997;1.000;1.000;
0.997)3'
coverage = 1.000
InterPro :
IPR001073 : Complement C1q protein
IPR008983 : Tumour necrosis factor-like domain
IPR011489 : EMI domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 12, mito 8, lyso 6, extr_plas 6, cyto_mito 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021047)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK171303
Canis
sp. (Dog) : ENSCAFT00000029258
Macaca
sp. (Macaque) : ENSMMUT00000024678
Monodelphis
sp. (Opossum) : ENSMODT00000027302
Oryzias
sp. (Medaka) : ENSORLT00000014145
Oryzias
sp. (Medaka) : ENSORLT00000022360
Pongo
sp. (Orangutan) : ENSPPYT00000010543
Pan
sp. (Chimpanzee) : ENSPTRT00000018065
Tetraodon
sp. (Tetraodon) : GSTENT00031781001
Tetraodon
sp. (Tetraodon) : GSTENT00034517001
Takifugu
sp. (Fugu) : SINFRUT00000142450
Takifugu
sp. (Fugu) : SINFRUT00000165369
Equus
sp. (Horse) : XM_001915828
Rattus
sp. (Rat) : XM_237520
Gallus
sp. (Chicken) : XM_419145
Bos
sp. (Cow) : XM_592120
Danio
sp. (Zebrafish) : XM_681997
Danio
sp. (Zebrafish) : XM_694010
HIX0021047
HIT000015386
(
AK090519
)
(EMILIN-2 precursor.)
genome : 2,891,872 - 2,914,073 (22,202)
query : 1 - 2,087 (2,087/2,087)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001073 : Complement C1q protein
IPR008983 : Tumour necrosis factor-like domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, nucl 11, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021047)
HIX0021047
HIT000117846 (
ENST00000308080
)
(EMILIN-2; Basilin; Elastin microfibril interface-located protein 2; Elastin microfibril interfacer 2; Precursor;)
genome : 2,906,213 - 2,914,039 (7,827)
query : 1 - 1,544 (1,544/1,544)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 23, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021047)
HIX0021047
HIT000695654 (
ENST00000583776
)
(EMILIN-2 precursor.)
genome : 2,906,567 - 2,913,160 (6,594)
query : 1 - 775 (775/775)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 11, mito 6, cyto 4.5, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021047)
HIX0021047
HIT000058864
(
AB026706
)
(EMILIN-2 precursor.)
genome : 2,906,957 - 2,914,084 (7,128)
query : 1 - 1,309 (1,309/1,328)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001073 : Complement C1q protein
IPR008983 : Tumour necrosis factor-like domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 17, nucl 14.5, cyto 14.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021047)
HIX0021047
HIT000456623
(
DQ590092
)
(Non-protein coding transcript.)
genome : 2,909,782 - 2,909,813 (32)
query : 1 - 32 (32/32)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021047)
HIX0021047
HIT000024754
(
AL117592
)
(Conserved hypothetical protein.)
genome : 2,913,884 - 2,915,991 (2,108)
query : 1 - 2,106 (2,106/2,124)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 0.992
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, extr 11, cyto 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021047)
HIX0014299
HIT000436039
(
BC152448
)
Representative transcript
(Phosphatidate phosphatase LPIN2; EC=3.1.3.4; Lipin-2;)
genome : 2,916,999 - 3,011,945 (94,947)
query : 1 - 6,220 (6,220/6,252)
20 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.1.3.4
KEGG pathway :
00561 : Glycerolipid metabolism (35)
00564 : Glycerophospholipid metabolism (49)
00565 : Ether lipid metabolism (23)
00600 : Sphingolipid metabolism (25)
01100 : Metabolic pathways (1346)
InterPro :
IPR007651 : Lipin, N-terminal
IPR013209 : LNS2, Lipin/Ned1/Smp2
IPR023214 : HAD-like domain
IPR026744 : Phosphatidate phosphatase LPIN2
GO :
0003713 : Molecular Function : transcription coactivator activity
0006629 : Biological Process : lipid metabolic process
0008195 : Molecular Function : phosphatidate phosphatase activity
0045944 : Biological Process : positive regulation of transcription from RNA polymerase II promoter
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto_nucl 15, extr 2, cyto 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0014299)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB172904
Mus
sp. (Mouse) : AF286723
Gallus
sp. (Chicken) : AJ720722
Monodelphis
sp. (Opossum) : ENSMODT00000036969
Oryzias
sp. (Medaka) : ENSORLT00000014180
Oryzias
sp. (Medaka) : ENSORLT00000022358
Pongo
sp. (Orangutan) : ENSPPYT00000010544
Rattus
sp. (Rat) : ENSRNOT00000020476
Tetraodon
sp. (Tetraodon) : GSTENT00031782001
Tetraodon
sp. (Tetraodon) : GSTENT00034515001
Takifugu
sp. (Fugu) : SINFRUT00000134836
Takifugu
sp. (Fugu) : SINFRUT00000142452
Pan
sp. (Chimpanzee) : XM_512044
Bos
sp. (Cow) : XM_592307
Canis
sp. (Dog) : XM_844398
Equus
sp. (Horse) : XR_044526
HIX0014299
HIT000204968 (
NM_014646
)
(Phosphatidate phosphatase LPIN2; EC=3.1.3.4; Lipin-2;)
genome : 2,916,993 - 3,011,945 (94,953)
query : 1 - 6,228 (6,228/6,245)
20 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.1.3.4
KEGG pathway :
00561 : Glycerolipid metabolism (35)
00564 : Glycerophospholipid metabolism (49)
00565 : Ether lipid metabolism (23)
00600 : Sphingolipid metabolism (25)
01100 : Metabolic pathways (1346)
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto_nucl 15, extr 2, cyto 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0014299)
HIX0014299
HIT000108038 (
ENST00000261596
)
(Phosphatidate phosphatase LPIN2; EC=3.1.3.4; Lipin-2;)
genome : 2,916,992 - 3,011,945 (94,954)
query : 1 - 6,229 (6,229/6,229)
20 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.1.3.4
KEGG pathway :
00561 : Glycerolipid metabolism (35)
00564 : Glycerophospholipid metabolism (49)
00565 : Ether lipid metabolism (23)
00600 : Sphingolipid metabolism (25)
01100 : Metabolic pathways (1346)
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto_nucl 15, extr 2, cyto 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0014299)
HIX0014299
HIT000042382
(
D87436
)
(Phosphatidate phosphatase LPIN2; EC=3.1.3.4; Lipin-2;)
genome : 2,917,000 - 3,011,945 (94,946)
query : 1 - 6,219 (6,219/6,219)
20 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.1.3.4
KEGG pathway :
00561 : Glycerolipid metabolism (35)
00564 : Glycerophospholipid metabolism (49)
00565 : Ether lipid metabolism (23)
00600 : Sphingolipid metabolism (25)
01100 : Metabolic pathways (1346)
InterPro :
IPR007651 : Lipin, N-terminal
IPR013209 : LNS2, Lipin/Ned1/Smp2
IPR023214 : HAD-like domain
IPR026744 : Phosphatidate phosphatase LPIN2
GO :
0003713 : Molecular Function : transcription coactivator activity
0006629 : Biological Process : lipid metabolic process
0008195 : Molecular Function : phosphatidate phosphatase activity
0045944 : Biological Process : positive regulation of transcription from RNA polymerase II promoter
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto_nucl 15, extr 2, cyto 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0014299)
HIX0136881
HIT000436785
(
DQ570254
)
Representative transcript
(Non-protein coding transcript.)
genome : 2,917,946 - 2,917,977 (32)
query : 1 - 32 (32/32)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0136881)
HIX0014299
HIT000696165 (
ENST00000584294
)
(Phosphatidate phosphatase LPIN2; EC=3.1.3.4; Lipin-2;)
genome : 2,940,603 - 3,013,313 (72,711)
query : 1 - 936 (936/936)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.1.3.4
KEGG pathway :
00561 : Glycerolipid metabolism (35)
00564 : Glycerophospholipid metabolism (49)
00565 : Ether lipid metabolism (23)
00600 : Sphingolipid metabolism (25)
01100 : Metabolic pathways (1346)
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17.5, cyto_nucl 12.5, extr 7, cyto 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0014299)
HIX0039852
HIT000562858 (
NR_026659
)
(HSP20-like chaperone domain containing protein.)
genome : 2,943,210 - 2,946,621 (3,412)
query : 1 - 3,412 (3,412/3,412)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15, nucl 13.5, cyto 11.5, mito 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039852)
HIX0039852
HIT000555133_02 (
ENST00000457199
)
(Cysteine and histidine-rich domain-containing protein 1; CHORD domain-containing protein 1; CHORD-containing protein 1; CHP-1; Protein morgana;)
genome : 2,944,250 - 2,946,621 (2,372)
query : 18 - 1,996 (1,979/2,003)
3 exons
identity = 0.951
3'(0.988;0.950;0.946)5'
coverage = 0.988
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, extr 11, cyto_nucl 10, nucl 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039852)
HIX0039852
HIT000694737_02 (
ENST00000582850
)
(HSP20-like chaperone domain containing protein.)
genome : 2,945,548 - 2,946,532 (985)
query : 1 - 985 (985/985)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15, nucl 13.5, cyto 11.5, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039852)
HIX0039852
HIT000264612
(
BC071793
)
Representative transcript
(Cysteine and histidine-rich domain-containing protein 1 isoform a.)
genome : 2,945,628 - 2,946,888 (1,261)
query : 1 - 1,261 (1,261/1,290)
1 exon
identity = 0.998
3'(0.998)5'
coverage = 1.000
InterPro :
IPR007051 : Cysteine/histidine-rich domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, nucl 9, cyto_nucl 8.5, extr_plas 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039852)
Ortholog candidate ( ->
Evola
)
Equus
sp. (Horse) : ENSECAT00000009555
Takifugu
sp. (Fugu) : SINFRUT00000175723
Pan
sp. (Chimpanzee) : XR_020768
HIX0039852
HIT000693047 (
ENST00000581139
)
(Cysteine and histidine-rich domain-containing protein 1 isoform b.)
genome : 2,945,625 - 2,946,888 (1,264)
query : 1 - 1,264 (1,264/1,264)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15, nucl 13.5, cyto 11.5, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039852)
HIX0225365
HIT000693391 (
ENST00000581488
)
(Hypothetical short protein.)
genome : 2,948,236 - 2,950,676 (2,441)
query : 1 - 573 (573/573)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, nucl 2, cyto 2, cyto_nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225365)
HIX0225365
HIT000696300 (
ENST00000584431
)
(Conserved hypothetical protein.)
genome : 2,948,339 - 2,960,754 (12,416)
query : 1 - 673 (673/673)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, nucl 2, cyto 2, cyto_nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225365)
HIX0014299
HIT000696777 (
ENST00000584915
)
(Phosphatidate phosphatase LPIN2; EC=3.1.3.4; Lipin-2;)
genome : 2,954,514 - 2,982,871 (28,358)
query : 1 - 491 (491/491)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 3.1.3.4
KEGG pathway :
00561 : Glycerolipid metabolism (35)
00564 : Glycerophospholipid metabolism (49)
00565 : Ether lipid metabolism (23)
00600 : Sphingolipid metabolism (25)
01100 : Metabolic pathways (1346)
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 24, nucl 4, extr 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0014299)
HIX0225598
HIT000694482 (
ENST00000582591
)
(Conserved hypothetical protein.)
genome : 2,967,016 - 2,985,408 (18,393)
query : 1 - 568 (568/568)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225598)
HIX0014299
HIT000693471 (
ENST00000581568
)
(Conserved hypothetical protein.)
genome : 2,972,358 - 2,982,807 (10,450)
query : 1 - 278 (278/278)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, cyto_nucl 10.5, cyto 9, nucl 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0014299)
HIX0225636
HIT000695869 (
ENST00000583992
)
(Conserved hypothetical protein.)
genome : 2,990,650 - 2,991,076 (427)
query : 1 - 427 (427/427)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto_nucl 8.33333, nucl 7.5, cyto 6,
cyto_pero 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225636)
HIX0212718
HIT000615852 (
ENST00000516449
)
(Non-protein coding transcript.)
genome : 3,025,432 - 3,025,564 (133)
query : 1 - 133 (133/133)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0212718)
HIX0027360
HIT000322959
(
X69090
)
(Myomesin-1; 190 kDa connectin-associated protein; 190 kDa titin-associated protein; Myomesin family member 1;)
genome : 3,066,805 - 3,193,952 (127,148)
query : 4 - 4,924 (4,921/4,949)
35 exons
identity = 0.992
3'(0.985;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.999
InterPro :
IPR003598 : Immunoglobulin subtype 2
IPR003961 : Fibronectin type III
IPR013098 : Immunoglobulin I-set
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 15.5, nucl 10
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027360)
HIX0027360
HIT000200598 (
NM_003803
)
(Myomesin-1; 190 kDa connectin-associated protein; 190 kDa titin-associated protein; Myomesin family member 1;)
genome : 3,066,805 - 3,220,106 (153,302)
query : 1 - 5,847 (5,847/5,848)
38 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, cyto 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027360)
HIX0027360
HIT000398372 (
NM_019856
)
(Myomesin-1; 190 kDa connectin-associated protein; 190 kDa titin-associated protein; Myomesin family member 1;)
genome : 3,066,805 - 3,220,106 (153,302)
query : 1 - 5,559 (5,559/5,560)
37 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, cyto 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027360)
HIX0027360
HIT000310439 (
ENST00000356443
)
(Myomesin-1; 190 kDa connectin-associated protein; 190 kDa titin-associated protein; Myomesin family member 1;)
genome : 3,066,805 - 3,220,106 (153,302)
query : 1 - 5,847 (5,847/5,847)
38 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027360)
HIX0027360
HIT000483527 (
ENST00000400569
)
(Myomesin-1; 190 kDa connectin-associated protein; 190 kDa titin-associated protein; Myomesin family member 1;)
genome : 3,066,805 - 3,220,106 (153,302)
query : 1 - 5,847 (5,847/5,847)
38 exons
identity = 1.000
3'(1.000;1.000;0.957;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027360)
HIX0027360
HIT000045195
(
AK125322
)
(Myomesin-1; 190 kDa connectin-associated protein; 190 kDa titin-associated protein; Myomesin family member 1;)
genome : 3,066,817 - 3,220,106 (153,290)
query : 1 - 5,835 (5,835/5,835)
38 exons
identity = 0.998
3'(0.997;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003598 : Immunoglobulin subtype 2
IPR003961 : Fibronectin type III
IPR013098 : Immunoglobulin I-set
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027360)
HIX0027360
HIT000249282
(
AJ621424
)
Representative transcript
(Myomesin-1; 190 kDa connectin-associated protein; 190 kDa titin-associated protein; Myomesin family member 1;)
genome : 3,066,817 - 3,220,106 (153,290)
query : 1 - 5,835 (5,835/5,835)
38 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003598 : Immunoglobulin subtype 2
IPR003961 : Fibronectin type III
IPR013098 : Immunoglobulin I-set
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027360)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AJ012072
Monodelphis
sp. (Opossum) : ENSMODT00000027300
Oryzias
sp. (Medaka) : ENSORLT00000014277
Pongo
sp. (Orangutan) : ENSPPYT00000010542
Takifugu
sp. (Fugu) : SINFRUT00000134845
Takifugu
sp. (Fugu) : SINFRUT00000142455
Gallus
sp. (Chicken) : U58204
Equus
sp. (Horse) : XM_001493880
Danio
sp. (Zebrafish) : XM_001919324
Pan
sp. (Chimpanzee) : XM_512042
Canis
sp. (Dog) : XM_537314
Bos
sp. (Cow) : XM_618609
Macaca
sp. (Macaque) : XR_010160
HIX0027360
HIT000108043 (
ENST00000261606
)
(Myomesin-1; 190 kDa connectin-associated protein; 190 kDa titin-associated protein; Myomesin family member 1;)
genome : 3,066,951 - 3,219,847 (152,897)
query : 1 - 5,154 (5,154/5,154)
37 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027360)
HIX0027360
HIT000387397
(
BC116183
)
(Myomesin-1; 190 kDa connectin-associated protein; 190 kDa titin-associated protein; Myomesin family member 1;)
genome : 3,066,951 - 3,219,847 (152,897)
query : 1 - 5,154 (5,154/5,154)
37 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003598 : Immunoglobulin subtype 2
IPR003961 : Fibronectin type III
IPR013098 : Immunoglobulin I-set
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, cyto 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027360)
HIX0027360
HIT000387398
(
BC116184
)
(Myomesin-1; 190 kDa connectin-associated protein; 190 kDa titin-associated protein; Myomesin family member 1;)
genome : 3,066,951 - 3,219,847 (152,897)
query : 1 - 5,152 (5,152/5,152)
37 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.993)5'
coverage = 1.000
InterPro :
IPR003598 : Immunoglobulin subtype 2
IPR003961 : Fibronectin type III
IPR013098 : Immunoglobulin I-set
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, cyto 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027360)
HIX0027360
HIT000693705 (
ENST00000581804
)
(Myomesin-1; 190 kDa connectin-associated protein; 190 kDa titin-associated protein; Myomesin family member 1;)
genome : 3,067,263 - 3,075,649 (8,387)
query : 1 - 545 (545/545)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 16, extr 11, cyto 2.5, cyto_nucl 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027360)
HIX0014300
HIT000004701
(
AK021427
)
Representative transcript
(Conserved hypothetical protein.)
genome : 3,072,996 - 3,074,525 (1,530)
query : 1 - 1,530 (1,530/1,530)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 20, cyto 7.5, cyto_nucl 6.5, nucl 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0014300)
HIX0027360
HIT000692985 (
ENST00000581075
)
(Myomesin-1; 190 kDa connectin-associated protein; 190 kDa titin-associated protein; Myomesin family member 1;)
genome : 3,075,736 - 3,090,764 (15,029)
query : 1 - 684 (684/684)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, extr 10, cyto_mito 10
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027360)
HIX0014298
eHIT000008359 ( ESTsASS_18_213 )
(Non-protein coding transcript.)
genome : 2,655,737 - 2,697,868 (42,132)
query : 1 - 1,509 (1,509/1,509)
10 exons
ESTs assembly
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0014298)
ESTs used for assembly :
EH354954,AA336927,AA336502,CN365983
AI904014,AI904018,DW440792,BU623449
DR005791
AC008109.6
1500001-1615962 F -
NCBI
AC019183.3
1615963-1744182 F +
NCBI
AP005057.2
1744183-1831887 F +
NCBI
AP005481.2
1831888-1884838 F +
NCBI
AP005262.3
1884839-1995945 F +
NCBI
AP000945.5
1995946-2210026 F +
NCBI
AP000940.8
2210027-2300816 F +
NCBI
AP005230.2
2300817-2471875 F +
NCBI
AP005136.2
2471876-2599091 F +
NCBI
AP005061.3
2599092-2675807 F +
NCBI
AP001011.6
2675808-2847568 F +
NCBI
AP000919.6
2847569-3003154 F +
NCBI
AP005431.3
3003155-3100000 F +
NCBI