bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0015210
HIT000204244 (
NM_013256
)
(Zinc finger protein 180; HHZ168;)
genome : 44,979,860 - 45,004,574 (24,715)
query : 1 - 3,120 (3,120/3,140)
5 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015210)
HIX0015210
HIT000099462
(
BC051903
)
Representative transcript
(Zinc finger protein 180.)
genome : 44,979,860 - 45,004,547 (24,688)
query : 1 - 3,266 (3,266/3,285)
7 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001909 : Krueppel-associated box
GO :
0003676 : Molecular Function : nucleic acid binding
0005622 : Cellular Component : intracellular
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30, cyto_nucl 17
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015210)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK144892
Bos
sp. (Cow) : BT026551
Pongo
sp. (Orangutan) : CR859274
Monodelphis
sp. (Opossum) : ENSMODT00000026496
Rattus
sp. (Rat) : U41164
Macaca
sp. (Macaque) : XM_001109160
Equus
sp. (Horse) : XM_001500220
Pan
sp. (Chimpanzee) : XM_512734
HIX0015210
HIT000103525 (
ENST00000221327
)
(Zinc finger protein 180; HHZ168;)
genome : 44,979,854 - 45,004,574 (24,721)
query : 1 - 3,126 (3,126/3,126)
5 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015210)
HIX0015210
HIT000042561
(
AK122688
)
(Zinc finger protein 180.)
genome : 44,979,854 - 45,004,572 (24,719)
query : 1 - 3,049 (3,049/3,049)
4 exons
identity = 0.998
3'(0.989;1.000)5'
coverage = 1.000
InterPro :
IPR001909 : Krueppel-associated box
GO :
0003676 : Molecular Function : nucleic acid binding
0005622 : Cellular Component : intracellular
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015210)
HIX0015210
HIT000475451 (
ENST00000391956
)
(Zinc finger protein 180; HHZ168;)
genome : 44,979,854 - 45,004,572 (24,719)
query : 1 - 3,049 (3,049/3,049)
4 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015210)
HIX0015210
HIT000701923 (
ENST00000590088
)
(Zinc finger protein 84.)
genome : 44,979,856 - 45,004,576 (24,721)
query : 1 - 3,131 (3,131/3,131)
5 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27.5, cyto_nucl 16.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015210)
HIX0015210
HIT000703916 (
ENST00000592095
)
(Zinc finger protein 180.)
genome : 44,979,856 - 45,004,547 (24,692)
query : 1 - 3,270 (3,270/3,270)
7 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30, cyto_nucl 17
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015210)
HIX0015210
HIT000073295
(
AF192913
)
(Zinc finger protein 180; HHZ168;)
genome : 44,979,861 - 45,004,555 (24,695)
query : 1 - 3,100 (3,100/3,101)
5 exons
identity = 0.996
3'(0.989;0.981)5'
coverage = 1.000
InterPro :
IPR001909 : Krueppel-associated box
GO :
0003676 : Molecular Function : nucleic acid binding
0005622 : Cellular Component : intracellular
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015210)
HIX0015210
HIT000704347 (
ENST00000592529
)
(Zinc finger protein 180.)
genome : 44,979,861 - 45,004,575 (24,715)
query : 1 - 3,048 (3,048/3,048)
5 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31.5, cyto_nucl 16.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015210)
HIX0015210
HIT000007321
(
AK024047
)
(Zinc finger protein 180.)
genome : 44,979,861 - 45,004,572 (24,712)
query : 1 - 3,046 (3,046/3,046)
5 exons
identity = 0.999
3'(1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001909 : Krueppel-associated box
GO :
0003676 : Molecular Function : nucleic acid binding
0005622 : Cellular Component : intracellular
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31.5, cyto_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015210)
HIX0015210
HIT000386720
(
BC113015
)
(Zinc finger protein 84.)
genome : 44,980,293 - 45,004,483 (24,191)
query : 1 - 2,601 (2,601/2,601)
5 exons
identity = 1.000
3'(1.000;0.996)5'
coverage = 1.000
InterPro :
IPR001909 : Krueppel-associated box
GO :
0003676 : Molecular Function : nucleic acid binding
0005622 : Cellular Component : intracellular
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27.5, cyto_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015210)
HIX0015210
HIT000093170
(
BC033642
)
(Zinc finger protein 84.)
genome : 44,980,503 - 45,004,553 (24,051)
query : 10 - 2,470 (2,461/2,485)
5 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 0.996
InterPro :
IPR001909 : Krueppel-associated box
GO :
0003676 : Molecular Function : nucleic acid binding
0005622 : Cellular Component : intracellular
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27.5, cyto_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015210)
HIX0015210
HIT000434059
(
AK315193
)
(Zinc finger protein 180; HHZ168;)
genome : 44,980,619 - 45,004,574 (23,956)
query : 1 - 2,361 (2,361/2,361)
5 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001909 : Krueppel-associated box
GO :
0003676 : Molecular Function : nucleic acid binding
0005622 : Cellular Component : intracellular
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015210)
HIX0015210
HIT000698483 (
ENST00000586637
)
(Zinc finger protein 180.)
genome : 44,982,007 - 45,004,574 (22,568)
query : 1 - 1,023 (1,023/1,023)
6 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, extr 10, cyto_nucl 9.5, cysk 5,
extr_plas 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015210)
HIX0015210
HIT000702888 (
ENST00000591064
)
(Zinc finger protein 180.)
genome : 44,982,066 - 45,004,574 (22,509)
query : 1 - 837 (837/837)
5 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 14.5, nucl 6, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015210)
HIX0015210
HIT000698892 (
ENST00000587047
)
(Zinc finger protein 180.)
genome : 44,982,321 - 45,004,562 (22,242)
query : 1 - 525 (525/525)
4 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18, extr 9, E.R._mito 9, mito_nucl 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015210)
HIX0015210
HIT000697370 (
ENST00000585514
)
(Zinc finger protein 180.)
genome : 44,983,627 - 45,004,574 (20,948)
query : 1 - 564 (564/564)
4 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 21, extr 5, cyto 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015210)
HIX0015210
HIT000702197 (
ENST00000590366
)
(Zinc finger protein 180.)
genome : 45,000,609 - 45,004,575 (3,967)
query : 1 - 538 (538/538)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, mito 10, cyto_nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015210)
HIX0015210
HIT000703960 (
ENST00000592140
)
(Zinc finger protein 180.)
genome : 45,000,609 - 45,004,571 (3,963)
query : 1 - 533 (533/533)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, nucl 8, cyto_nucl 7, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015210)
HIX0040059
HIT000252174
(
AY358129
)
Representative transcript
(Carcinoembryonic antigen-related cell adhesion molecule 20 isoform 4L precursor.)
genome : 45,005,729 - 45,033,811 (28,083)
query : 1 - 2,119 (2,119/2,119)
12 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;0.989;0.992;1.000;
0.996;1.000;0.996;1.000;0.997)5'
coverage = 1.000
InterPro :
IPR003598 : Immunoglobulin subtype 2
IPR013098 : Immunoglobulin I-set
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 8.5, extr_plas 8.5, extr 7.5, E.R. 4.5, cyto 4,
E.R._mito 3.33333, cyto_pero 3.33333, pero 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0040059)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK033581
Bos
sp. (Cow) : BT026551
Canis
sp. (Dog) : ENSCAFT00000036986
Pan
sp. (Chimpanzee) : ENSPTRT00000020660
Rattus
sp. (Rat) : ENSRNOT00000026060
Macaca
sp. (Macaque) : XM_001103562
HIX0040059
HIT000552687 (
ENST00000454753
)
(Carcinoembryonic antigen-related cell adhesion molecule 20 isoform 5L precursor.)
genome : 45,005,729 - 45,033,811 (28,083)
query : 1 - 2,120 (2,120/2,120)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 9.5, extr_plas 8.5, extr 6.5, E.R. 6.5, pero 4.5,
E.R._mito 4.33333, mito_pero 3.33333, cyto_pero 3.33333,
E.R._golg 3.33333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0040059)
HIX0040059
HIT000484262
(
EU008600
)
(Carcinoembryonic antigen-related cell adhesion molecule 20 isoform 4L precursor.)
genome : 45,010,211 - 45,033,548 (23,338)
query : 1 - 1,809 (1,809/1,809)
12 exons
identity = 0.996
3'(1.000;1.000;1.000;0.984;0.989;0.983;0.993;
1.000;1.000;1.000;1.000;0.985)5'
coverage = 1.000
InterPro :
IPR003598 : Immunoglobulin subtype 2
IPR013098 : Immunoglobulin I-set
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 9.5, extr_plas 9, extr 7.5, E.R. 4.5, cyto 4,
E.R._mito 3.33333, nucl 2, lyso 2, cyto_golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0040059)
HIX0040059
HIT000484263
(
EU008601
)
(Carcinoembryonic antigen-related cell adhesion molecule 20 isoform 4S precursor.)
genome : 45,010,211 - 45,033,548 (23,338)
query : 1 - 1,494 (1,494/1,494)
10 exons
identity = 0.997
3'(1.000;1.000;1.000;0.989;0.992;1.000;1.000;
1.000;0.993;0.985)5'
coverage = 1.000
InterPro :
IPR003598 : Immunoglobulin subtype 2
IPR013098 : Immunoglobulin I-set
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 25, extr 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0040059)
HIX0040059
HIT000484264
(
EU008602
)
(Carcinoembryonic antigen-related cell adhesion molecule 20 isoform 4L precursor.)
genome : 45,010,211 - 45,033,548 (23,338)
query : 1 - 1,530 (1,530/1,530)
11 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;0.989;0.992;1.000;
1.000;1.000;1.000;0.985)5'
coverage = 1.000
InterPro :
IPR003598 : Immunoglobulin subtype 2
IPR013098 : Immunoglobulin I-set
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 24, extr 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0040059)
HIX0040059
HIT000484265
(
EU008603
)
(Carcinoembryonic antigen-related cell adhesion molecule 20 isoform 4S precursor.)
genome : 45,010,211 - 45,033,548 (23,338)
query : 1 - 1,773 (1,773/1,773)
11 exons
identity = 0.998
3'(1.000;1.000;1.000;0.989;0.992;0.996;1.000;
1.000;1.000;1.000;0.985)5'
coverage = 1.000
InterPro :
IPR003598 : Immunoglobulin subtype 2
IPR013098 : Immunoglobulin I-set
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 8.5, extr_plas 8.5, extr 7.5, E.R. 4.5, cyto 4,
E.R._mito 3.33333, cyto_pero 3.33333, pero 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0040059)
HIX0040059
HIT000485648 (
NM_001102597
)
(Carcinoembryonic antigen-related cell adhesion molecule 20 isoform 5S precursor.)
genome : 45,010,211 - 45,033,548 (23,338)
query : 1 - 1,809 (1,809/1,809)
12 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;0.989;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 9.5, extr_plas 9, extr 7.5, E.R. 4.5, cyto 4,
E.R._mito 3.33333, nucl 2, lyso 2, cyto_golg 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0040059)
HIX0040059
HIT000485649 (
NM_001102598
)
(Carcinoembryonic antigen-related cell adhesion molecule 20 isoform 4S precursor.)
genome : 45,010,211 - 45,033,548 (23,338)
query : 1 - 1,494 (1,494/1,494)
10 exons
identity = 0.999
3'(1.000;1.000;1.000;0.989;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 24, extr 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0040059)
HIX0040059
HIT000485650 (
NM_001102599
)
(Carcinoembryonic antigen-related cell adhesion molecule 20 isoform 4L precursor.)
genome : 45,010,211 - 45,033,548 (23,338)
query : 1 - 1,530 (1,530/1,530)
11 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;0.989;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 22, extr 8
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0040059)
HIX0040059
HIT000485651 (
NM_001102600
)
(Carcinoembryonic antigen-related cell adhesion molecule 20 isoform 5S precursor.)
genome : 45,010,211 - 45,033,548 (23,338)
query : 1 - 1,773 (1,773/1,773)
11 exons
identity = 0.999
3'(1.000;1.000;1.000;0.989;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 10.5, extr_plas 9.5, extr 7.5, E.R. 4.5,
E.R._mito 3.33333, cyto 3, nucl 2, lyso 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0040059)
HIX0040059
HIT000510145 (
ENST00000412211
)
(Carcinoembryonic antigen-related cell adhesion molecule 20 isoform 5S precursor.)
genome : 45,010,211 - 45,033,548 (23,338)
query : 1 - 1,773 (1,773/1,773)
11 exons
identity = 0.999
3'(1.000;1.000;1.000;0.989;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 10.5, extr_plas 9.5, extr 7.5, E.R. 4.5,
E.R._mito 3.33333, cyto 3, nucl 2, lyso 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0040059)
HIX0040059
HIT000512572 (
ENST00000414638
)
(Carcinoembryonic antigen-related cell adhesion molecule 20 isoform 5S precursor.)
genome : 45,010,211 - 45,033,548 (23,338)
query : 1 - 1,774 (1,774/1,774)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 9.5, extr_plas 8.5, extr 6.5, E.R. 6.5, pero 4.5,
E.R._mito 4.33333, mito_pero 3.33333, cyto_pero 3.33333,
E.R._golg 3.33333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0040059)
HIX0040059
HIT000519366 (
ENST00000421432
)
(Carcinoembryonic antigen-related cell adhesion molecule 20 isoform 4S precursor.)
genome : 45,010,211 - 45,033,548 (23,338)
query : 1 - 1,495 (1,495/1,495)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 9.5, extr_plas 8, E.R. 6, extr 5.5,
E.R._mito 5.33333, pero 4.5, mito_pero 4.16667, mito 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0040059)
HIX0040059
HIT000522837 (
ENST00000424903
)
(Carcinoembryonic antigen-related cell adhesion molecule 20 isoform 4L precursor.)
genome : 45,010,211 - 45,033,548 (23,338)
query : 1 - 1,530 (1,530/1,530)
11 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;0.989;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 22, extr 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0040059)
HIX0040059
HIT000529672 (
ENST00000431738
)
(Carcinoembryonic antigen-related cell adhesion molecule 20 isoform 5S precursor.)
genome : 45,010,211 - 45,033,548 (23,338)
query : 1 - 1,810 (1,810/1,810)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 9.5, extr_plas 8.5, extr 6.5, E.R. 6.5, pero 4.5,
E.R._mito 4.33333, mito_pero 3.33333, cyto_pero 3.33333,
E.R._golg 3.33333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0040059)
HIX0040059
HIT000543143 (
ENST00000445209
)
(Carcinoembryonic antigen-related cell adhesion molecule 20 isoform 5S precursor.)
genome : 45,010,211 - 45,033,548 (23,338)
query : 1 - 1,809 (1,809/1,809)
12 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;0.989;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 9.5, extr_plas 9, extr 7.5, E.R. 4.5, cyto 4,
E.R._mito 3.33333, nucl 2, lyso 2, cyto_golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0040059)
HIX0040059
HIT000546284 (
ENST00000448350
)
(Carcinoembryonic antigen-related cell adhesion molecule 20 isoform 4L precursor.)
genome : 45,010,211 - 45,033,548 (23,338)
query : 1 - 1,531 (1,531/1,531)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 9.5, extr_plas 8, E.R. 6, extr 5.5,
E.R._mito 5.33333, pero 4.5, mito_pero 4.16667, mito 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0040059)
HIX0040059
HIT000121104 (
ENST00000316962
)
(Carcinoembryonic antigen-related cell adhesion molecule 20 isoform 4S precursor.)
genome : 45,015,068 - 45,033,811 (18,744)
query : 1 - 2,034 (2,034/2,034)
11 exons
identity = 0.999
3'(0.986;1.000;1.000;0.989;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 8.5, extr_plas 8.5, extr 7.5, E.R. 4.5, cyto 4,
E.R._mito 3.33333, cyto_pero 3.33333, pero 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0040059)
HIX0226312
HIT000700550 (
ENST00000588710
)
(Non-protein coding transcript.)
genome : 45,040,251 - 45,040,599 (349)
query : 1 - 241 (241/241)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0226312)
HIX0202863
HIT000043723
(
AK123850
)
(Immunoglobulin subtype 2 domain containing protein.)
genome : 45,041,045 - 45,060,150 (19,106)
query : 1 - 3,015 (3,015/3,015)
8 exons
identity = 0.998
3'(0.997;1.000;1.000;1.000;0.996;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR003598 : Immunoglobulin subtype 2
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto_nucl 17, cyto 9, extr 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202863)
HIX0202863
HIT000544562 (
ENST00000446628
)
(Immunoglobulin subtype 2 domain containing protein.)
genome : 45,041,045 - 45,060,150 (19,106)
query : 1 - 3,016 (3,016/3,016)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto_nucl 17, cyto 9, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202863)
HIX0202863
HIT000563619 (
NR_027754
)
(Immunoglobulin subtype 2 domain containing protein.)
genome : 45,041,045 - 45,060,150 (19,106)
query : 1 - 3,016 (3,016/3,016)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto_nucl 17, cyto 9, extr 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202863)
HIX0202863
HIT000497621
(
AK302997
)
Representative transcript
(Immunoglobulin subtype 2 domain containing protein.)
genome : 45,043,153 - 45,124,119 (80,967)
query : 1 - 1,389 (1,389/1,392)
8 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;0.996;1.000;1.000;
1.000)5'
coverage = 0.998
InterPro :
IPR003598 : Immunoglobulin subtype 2
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, nucl 6, cyto 6, cyto_nucl 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202863)
Ortholog candidate ( ->
Evola
)
Monodelphis
sp. (Opossum) : ENSMODT00000033535
HIX0202863
HIT000552992 (
ENST00000455058
)
(Immunoglobulin subtype 2 domain containing protein.)
genome : 45,046,785 - 45,052,485 (5,701)
query : 1 - 1,021 (1,021/1,021)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18.5, cyto_nucl 17.5, cyto 9.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202863)
HIX0202863
HIT000553389 (
ENST00000455455
)
(Conserved hypothetical protein.)
genome : 45,050,647 - 45,124,119 (73,473)
query : 1 - 545 (545/545)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 11, extr 7, cyto 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202863)
HIX0202981
HIT000539748 (
ENST00000441814
)
(Non-protein coding transcript.)
genome : 45,073,550 - 45,073,810 (261)
query : 1 - 261 (261/261)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202981)
HIX0115628
HIT000657224 (
NM_001205280
)
(Immunoglobulin superfamily member 23.)
genome : 45,116,940 - 45,140,081 (23,142)
query : 1 - 989 (989/1,001)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 9, nucl 6.5, cyto_nucl 6.5, plas 6, cyto 5.5,
E.R. 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0115628)
HIX0115628
HIT000504327 (
ENST00000402988
)
(Immunoglobulin superfamily member 23.)
genome : 45,116,940 - 45,140,081 (23,142)
query : 1 - 989 (989/989)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 9, nucl 6.5, cyto_nucl 6.5, plas 6, cyto 5.5,
E.R. 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0115628)
HIX0115628
eHIT000009596 ( ESTsASS_19_1029 )
(Non-protein coding transcript.)
genome : 45,116,940 - 45,140,081 (23,142)
query : 1 - 989 (989/989)
5 exons
ESTs assembly
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0115628)
ESTs used for assembly :
BX112065,CF272629,N45347,BG197674
HIX0115628
HIT000704325 (
ENST00000592507
)
(Immunoglobulin superfamily member 23.)
genome : 45,117,092 - 45,127,074 (9,983)
query : 1 - 285 (285/285)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14, nucl 10, cyto_nucl 8, cyto 4, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0115628)
HIX0115628
HIT000526179 (
ENST00000428245
)
(Immunoglobulin superfamily member 23.)
genome : 45,117,240 - 45,139,754 (22,515)
query : 1 - 704 (704/704)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24, plas 3, extr 2, cyto_plas 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0115628)
HIX0115628
HIT000389546
(
BC127928
)
Representative transcript
(Immunoglobulin superfamily member 23.)
genome : 45,127,043 - 45,138,792 (11,750)
query : 1 - 473 (473/473)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0115628)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK088927
Rattus
sp. (Rat) : ENSRNOT00000026006
Macaca
sp. (Macaque) : XM_001103899
Bos
sp. (Cow) : XM_001256584
Pan
sp. (Chimpanzee) : XM_512735
Canis
sp. (Dog) : XM_850092
HIX0115628
HIT000389547
(
BC127929
)
(Immunoglobulin superfamily member 23.)
genome : 45,127,043 - 45,138,792 (11,750)
query : 1 - 473 (473/473)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0115628)
HIX0115628
HIT000539323 (
ENST00000441389
)
(Immunoglobulin superfamily member 23.)
genome : 45,127,043 - 45,138,792 (11,750)
query : 1 - 473 (473/473)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0115628)
HIX0226021
HIT000702623 (
ENST00000590796
)
(Hypothetical protein.)
genome : 45,135,500 - 45,221,903 (86,404)
query : 1 - 829 (829/829)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23, mito 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0226021)
HIX0015211
HIT000137586 (
ENST00000344956
)
(Poliovirus receptor isoform gamma precursor.)
genome : 45,147,098 - 45,169,429 (22,332)
query : 1 - 5,745 (5,745/5,745)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 24, lyso 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015211)
HIX0015211
HIT000203100 (
NM_006505
)
(Poliovirus receptor; Nectin-like protein 5; NECL-5; AltName: CD_antigen=CD155; Precursor;)
genome : 45,147,098 - 45,169,429 (22,332)
query : 1 - 5,904 (5,904/5,904)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 16.5, extr_plas 10.5, E.R. 4, lyso 4, extr 3.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015211)
HIX0015211
HIT000560190 (
NM_001135768
)
(Poliovirus receptor; Nectin-like protein 5; NECL-5; AltName: CD_antigen=CD155; Precursor;)
genome : 45,147,098 - 45,169,429 (22,332)
query : 1 - 5,769 (5,769/5,769)
7 exons
identity = 0.997
5'(1.000;1.000;1.000;1.000;1.000;0.750;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 24, lyso 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015211)
HIX0015211
HIT000560191 (
NM_001135769
)
(Poliovirus receptor isoform gamma precursor.)
genome : 45,147,098 - 45,169,429 (22,332)
query : 1 - 5,745 (5,745/5,745)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 24, lyso 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015211)
HIX0015211
HIT000523624 (
ENST00000425690
)
(Poliovirus receptor; Nectin-like protein 5; NECL-5; AltName: CD_antigen=CD155; Precursor;)
genome : 45,147,098 - 45,166,850 (19,753)
query : 1 - 3,325 (3,325/3,325)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 16.5, extr_plas 10.5, E.R. 4, lyso 4, extr 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015211)
HIX0015211
HIT000560192 (
NM_001135770
)
(Poliovirus receptor isoform beta precursor.)
genome : 45,147,098 - 45,162,362 (15,265)
query : 1 - 1,643 (1,643/1,643)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 19.5, extr_plas 12, extr 3.5, pero 3, lyso 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015211)
HIX0015211
HIT000423743
(
AK290946
)
(Poliovirus receptor; Nectin-like protein 5; NECL-5; AltName: CD_antigen=CD155; Precursor;)
genome : 45,147,184 - 45,165,266 (18,083)
query : 1 - 1,655 (1,655/1,655)
8 exons
identity = 0.998
5'(0.997;0.997;1.000;1.000;1.000;0.994;1.000;
1.000)3'
coverage = 1.000
InterPro :
IPR013151 : Immunoglobulin
IPR013162 : CD80-like, immunoglobulin C2-set
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 15.5, extr_plas 11.5, extr 6.5, lyso 4, pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015211)
HIX0015211
HIT000504353 (
ENST00000403059
)
(Poliovirus receptor; Nectin-like protein 5; NECL-5; AltName: CD_antigen=CD155; Precursor;)
genome : 45,147,210 - 45,166,850 (19,641)
query : 1 - 3,078 (3,078/3,078)
7 exons
identity = 0.995
5'(1.000;1.000;1.000;1.000;1.000;0.750;0.999)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 24, lyso 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015211)
HIX0015211
HIT000494973
(
AK300349
)
(Poliovirus receptor; Nectin-like protein 5; NECL-5; AltName: CD_antigen=CD155; Precursor;)
genome : 45,147,210 - 45,165,269 (18,060)
query : 1 - 1,497 (1,497/1,497)
7 exons
identity = 0.989
5'(1.000;1.000;1.000;1.000;1.000;0.750;0.992)3'
coverage = 1.000
InterPro :
IPR013151 : Immunoglobulin
IPR013162 : CD80-like, immunoglobulin C2-set
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 24, lyso 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015211)
HIX0015211
HIT000102609 (
ENST00000187830
)
(Poliovirus receptor-related protein 2; Herpes virus entry mediator B; Herpesvirus entry mediator B; HveB; Nectin-2; AltName: CD_antigen=CD112; Precursor;)
genome : 45,147,214 - 45,166,850 (19,637)
query : 1 - 3,132 (3,132/3,132)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 9, plas 5, nucl 5, mito 5, extr_plas 5,
cyto_pero 5, mito_nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015211)
HIX0015211
HIT000019032
(
AK094177
)
(Poliovirus receptor-related protein 2; Herpes virus entry mediator B; Herpesvirus entry mediator B; HveB; Nectin-2; AltName: CD_antigen=CD112; Precursor;)
genome : 45,147,214 - 45,166,849 (19,636)
query : 1 - 3,131 (3,131/3,131)
8 exons
identity = 0.999
5'(1.000;1.000;0.997;1.000;1.000;0.994;1.000;
0.999)3'
coverage = 1.000
InterPro :
IPR013151 : Immunoglobulin
IPR013162 : CD80-like, immunoglobulin C2-set
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 9, plas 5, nucl 5, mito 5, extr_plas 5,
cyto_pero 5, mito_nucl 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015211)
HIX0015211
HIT000037177
(
BC015542
)
(Poliovirus receptor; Nectin-like protein 5; NECL-5; AltName: CD_antigen=CD155; Precursor;)
genome : 45,147,226 - 45,166,850 (19,625)
query : 1 - 3,197 (3,197/3,215)
8 exons
identity = 0.999
5'(0.996;1.000;1.000;1.000;1.000;0.994;1.000;
0.999)3'
coverage = 1.000
InterPro :
IPR013151 : Immunoglobulin
IPR013162 : CD80-like, immunoglobulin C2-set
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 17.5, extr_plas 11, lyso 4, extr 3.5, golg 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015211)
HIX0015211
HIT000194931
(
M24407
)
Representative transcript
(Poliovirus receptor; Nectin-like protein 5; NECL-5; AltName: CD_antigen=CD155; Precursor;)
genome : 45,147,397 - 45,165,078 (17,682)
query : 1 - 1,254 (1,254/1,254)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
InterPro :
IPR013151 : Immunoglobulin
IPR013162 : CD80-like, immunoglobulin C2-set
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 16.5, extr_plas 10.5, E.R. 4, lyso 4, extr 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015211)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : DQ851092
Monodelphis
sp. (Opossum) : ENSMODT00000026557
Pongo
sp. (Orangutan) : ENSPPYT00000011731
Rattus
sp. (Rat) : L12025
Takifugu
sp. (Fugu) : SINFRUT00000167230
Pan
sp. (Chimpanzee) : XM_001161582
Equus
sp. (Horse) : XM_001916958
Canis
sp. (Dog) : XM_533645
Bos
sp. (Cow) : XM_605244
Danio
sp. (Zebrafish) : XM_684217
HIX0015211
HIT000505596 (
ENST00000406449
)
(Poliovirus receptor isoform beta precursor.)
genome : 45,147,397 - 45,162,362 (14,966)
query : 1 - 1,344 (1,344/1,344)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 19.5, extr_plas 12, extr 3.5, pero 3, lyso 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015211)
HIX0015211
HIT000194930
(
M24406
)
(Poliovirus receptor isoform delta precursor.)
genome : 45,147,397 - 45,162,197 (14,801)
query : 1 - 1,179 (1,179/1,179)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR013151 : Immunoglobulin
IPR013162 : CD80-like, immunoglobulin C2-set
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 19.5, extr_plas 12, extr 3.5, pero 3, lyso 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015211)
HIX0015211
HIT000699627 (
ENST00000587785
)
(Poliovirus receptor isoform gamma precursor.)
genome : 45,153,313 - 45,165,147 (11,835)
query : 1 - 356 (356/356)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, nucl 5, cyto_nucl 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015211)
HIX0226740
HIT000725819 (
NR_039756
)
(Non-protein coding transcript.)
genome : 45,156,956 - 45,157,002 (47)
query : 1 - 47 (47/47)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0226740)
HIX0015211
HIT000703868 (
ENST00000592047
)
(Poliovirus receptor; Nectin-like protein 5; NECL-5; AltName: CD_antigen=CD155; Precursor;)
genome : 45,161,097 - 45,165,453 (4,357)
query : 1 - 561 (561/561)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 16, extr 7, cyto_nucl 6, cyto 5, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015211)
HIX0015211
HIT000009223
(
AK025949
)
(Conserved hypothetical protein.)
genome : 45,165,317 - 45,166,850 (1,534)
query : 1 - 1,534 (1,534/1,551)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, nucl 7, cyto 7, cyto_nucl 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015211)
HIX0015211
HIT000703801 (
ENST00000591979
)
(Conserved hypothetical protein.)
genome : 45,165,545 - 45,175,980 (10,436)
query : 1 - 608 (608/608)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14, extr 9, cyto_nucl 5.66667, nucl 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015211)
HIX0015211
HIT000023642
(
AK098812
)
(Conserved hypothetical protein.)
genome : 45,167,398 - 45,169,426 (2,029)
query : 1 - 2,027 (2,027/2,027)
1 exon
identity = 0.996
5'(0.996)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto_nucl 16.5, cyto 12
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015211)
HIX0015211
HIT000266038
(
BC083499
)
(Conserved hypothetical protein.)
genome : 45,174,724 - 45,187,626 (12,903)
query : 1 - 2,244 (2,244/2,265)
8 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015211)
HIX0015211
HIT000559382 (
NM_001127893
)
(Conserved hypothetical protein.)
genome : 45,174,724 - 45,187,626 (12,903)
query : 1 - 2,244 (2,244/2,265)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, mito 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015211)
HIX0015211
HIT000317398 (
NM_020219
)
(Carcinoembryonic antigen-related cell adhesion molecule 19; Carcinoembryonic antigen-like 1; Precursor;)
genome : 45,174,724 - 45,187,626 (12,903)
query : 1 - 2,247 (2,247/2,262)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 12, extr 8, plas 4, E.R. 3, cyto_plas 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015211)
HIX0015211
HIT000312430 (
ENST00000358777
)
(Conserved hypothetical protein.)
genome : 45,174,724 - 45,187,631 (12,908)
query : 1 - 2,249 (2,249/2,249)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015211)
HIX0015211
HIT000504564 (
ENST00000403660
)
(Carcinoembryonic antigen-related cell adhesion molecule 19; Carcinoembryonic antigen-like 1; Precursor;)
genome : 45,174,994 - 45,187,631 (12,638)
query : 1 - 1,982 (1,982/1,982)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 12, extr 8, plas 4, E.R. 3, cyto_plas 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015211)
HIX0015211
HIT000252438
(
AY358394
)
(Carcinoembryonic antigen-related cell adhesion molecule 19; Carcinoembryonic antigen-like 1; Precursor;)
genome : 45,174,994 - 45,187,510 (12,517)
query : 1 - 1,861 (1,861/1,863)
8 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.999)3'
coverage = 0.999
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 12, extr 8, plas 4, E.R. 3, cyto_plas 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015211)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK079290
Bos
sp. (Cow) : BC120416
Canis
sp. (Dog) : ENSCAFT00000007500
Monodelphis
sp. (Opossum) : ENSMODT00000026556
Pongo
sp. (Orangutan) : ENSPPYT00000011732
Macaca
sp. (Macaque) : XM_001104152
Equus
sp. (Horse) : XM_001500247
Pan
sp. (Chimpanzee) : XR_024745
HIX0015211
HIT000424385
(
AK291588
)
(Carcinoembryonic antigen-related cell adhesion molecule 19; Carcinoembryonic antigen-like 1; Precursor;)
genome : 45,175,023 - 45,186,903 (11,881)
query : 1 - 1,222 (1,222/1,222)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 12, extr 8, plas 4, E.R. 3, cyto_plas 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015211)
HIX0015211
HIT000010431
(
AK027157
)
(Carcinoembryonic antigen-related cell adhesion molecule 19 isoform 1 precursor.)
genome : 45,175,750 - 45,187,626 (11,877)
query : 1 - 1,961 (1,961/1,978)
8 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.996)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, cyto_nucl 7, nucl 5.5, cyto 5.5, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015211)
HIX0015211
HIT000584302 (
ENST00000480278
)
(Carcinoembryonic antigen-related cell adhesion molecule 19 isoform 2 precursor.)
genome : 45,175,750 - 45,187,627 (11,878)
query : 1 - 1,962 (1,962/1,962)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, cyto_nucl 7, nucl 5.5, cyto 5.5, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015211)
HIX0015211
HIT000564609 (
ENST00000459648
)
(Carcinoembryonic antigen-related cell adhesion molecule 19 isoform 1 precursor.)
genome : 45,180,857 - 45,187,631 (6,775)
query : 1 - 3,278 (3,278/3,278)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, mito 5, nucl 2, pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015211)
HIX0015211
HIT000048107
(
AK128234
)
(Carcinoembryonic antigen-related cell adhesion molecule 19 isoform 1 precursor.)
genome : 45,180,857 - 45,187,628 (6,772)
query : 1 - 3,273 (3,273/3,273)
4 exons
identity = 0.997
5'(0.998;1.000;1.000;0.997)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, mito 5, nucl 2, pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015211)
HIX0015211
HIT000026407
(
AL390165
)
(Hypothetical short protein.)
genome : 45,186,997 - 45,187,626 (630)
query : 1 - 630 (630/645)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18.5, cyto_nucl 13, extr 7, cyto 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015211)
HIX0059960
HIT000366403 (
NM_001039213
)
(Carcinoembryonic antigen-related cell adhesion molecule 16; Carcinoembryonic antigen-like 2; Precursor;)
genome : 45,202,421 - 45,213,986 (11,566)
query : 1 - 1,692 (1,692/1,692)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18.5, extr_plas 12, plas 4.5, cyto 3, nucl 2,
pero 2, lyso 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0059960)
HIX0059960
HIT000699175 (
ENST00000587331
)
(Carcinoembryonic antigen-related cell adhesion molecule 16; Carcinoembryonic antigen-like 2; Precursor;)
genome : 45,202,421 - 45,213,986 (11,566)
query : 1 - 1,701 (1,701/1,701)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18.5, extr_plas 12, plas 4.5, cyto 3, nucl 2,
pero 2, lyso 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0059960)
HIX0059960
HIT000503012
(
BC144608
)
Representative transcript
(Carcinoembryonic antigen-related cell adhesion molecule 16; Carcinoembryonic antigen-like 2; Precursor;)
genome : 45,202,421 - 45,213,907 (11,487)
query : 1 - 1,613 (1,613/1,613)
7 exons
identity = 0.999
5'(0.982;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR003598 : Immunoglobulin subtype 2
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18.5, extr_plas 12, plas 4.5, cyto 3, nucl 2,
pero 2, lyso 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0059960)
Ortholog candidate ( ->
Evola
)
Bos
sp. (Cow) : BC120416
Tetraodon
sp. (Tetraodon) : CR643698
Pongo
sp. (Orangutan) : ENSPPYT00000011733
Rattus
sp. (Rat) : ENSRNOT00000025913
Mus
sp. (Mouse) : NM_001033419
Takifugu
sp. (Fugu) : SINFRUT00000144002
Macaca
sp. (Macaque) : XM_001104311
Monodelphis
sp. (Opossum) : XM_001375050
Equus
sp. (Horse) : XM_001500247
Canis
sp. (Dog) : XM_541572
Pan
sp. (Chimpanzee) : XR_024752
HIX0059960
HIT000505178 (
ENST00000405314
)
(Carcinoembryonic antigen-related cell adhesion molecule 16; Carcinoembryonic antigen-like 2; Precursor;)
genome : 45,204,630 - 45,213,986 (9,357)
query : 1 - 1,583 (1,583/1,583)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18.5, extr_plas 12, plas 4.5, cyto 3, nucl 2,
pero 2, lyso 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0059960)
HIX0059960
HIT000484274
(
EU021223
)
(Carcinoembryonic antigen-related cell adhesion molecule 16; Carcinoembryonic antigen-like 2; Precursor;)
genome : 45,204,727 - 45,211,459 (6,733)
query : 1 - 1,267 (1,267/1,278)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.991
InterPro :
IPR003598 : Immunoglobulin subtype 2
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18.5, extr_plas 12, plas 4.5, cyto 3, nucl 2,
pero 2, lyso 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0059960)
HIX0226021
HIT000703135 (
ENST00000591312
)
(Hypothetical short protein.)
genome : 45,218,833 - 45,221,957 (3,125)
query : 1 - 752 (752/752)
2 exons
identity = 0.996
3'(1.000;0.987)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0226021)
HIX0226021
HIT000698021 (
ENST00000586169
)
(Hypothetical short protein.)
genome : 45,219,377 - 45,222,031 (2,655)
query : 1 - 379 (379/379)
2 exons
identity = 0.995
3'(1.000;0.994)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, nucl 9.5, cyto_nucl 9.5, cyto 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0226021)
HIX0212957
HIT000615794 (
ENST00000516391
)
(Non-protein coding transcript.)
genome : 45,229,248 - 45,229,322 (75)
query : 1 - 75 (75/75)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0212957)
HIX0040117
HIT000490804
(
AK296180
)
(B-cell lymphoma 3 protein; BCL-3; Proto-oncogene BCL3;)
genome : 45,250,962 - 45,262,743 (11,782)
query : 1 - 1,714 (1,714/1,714)
8 exons
identity = 0.999
5'(0.998;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
InterPro :
IPR002110 : Ankyrin repeat
IPR020683 : Ankyrin repeat-containing domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 9, nucl 7, plas 5.5, mito_nucl 5.5, mito 4,
pero 4, extr_plas 4, mito_pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0040117)
HIX0040117
HIT000504523 (
ENST00000403534
)
(B-cell lymphoma 3 protein; BCL-3; Proto-oncogene BCL3;)
genome : 45,250,962 - 45,262,743 (11,782)
query : 1 - 1,714 (1,714/1,714)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 9, nucl 7, plas 5.5, mito_nucl 5.5, mito 4,
pero 4, extr_plas 4, mito_pero 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0040117)
HIX0040117
HIT000591099 (
ENST00000487394
)
(B-cell lymphoma 3 protein; BCL-3; Proto-oncogene BCL3;)
genome : 45,251,093 - 45,252,261 (1,169)
query : 1 - 603 (603/603)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18.5, cyto_mito 12.1667, cyto_nucl 8.83333,
nucl 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0040117)
HIX0040117
HIT000102480 (
ENST00000164227
)
(B-cell lymphoma 3 protein; BCL-3; Proto-oncogene BCL3;)
genome : 45,251,804 - 45,263,301 (11,498)
query : 1 - 2,038 (2,038/2,038)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
pero 9, nucl 8, cyto 6.5, plas 5, cyto_mito 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0040117)
HIX0040117
HIT000201889 (
NM_005178
)
(B-cell lymphoma 3 protein; BCL-3; Proto-oncogene BCL3;)
genome : 45,251,978 - 45,263,301 (11,324)
query : 1 - 1,864 (1,864/1,864)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
pero 9, nucl 8, cyto 6.5, plas 5, cyto_mito 4.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0040117)
HIX0040117
HIT000261698
(
BC064993
)
Representative transcript
(B-cell lymphoma 3 protein; BCL-3; Proto-oncogene BCL3;)
genome : 45,251,980 - 45,263,301 (11,322)
query : 1 - 1,862 (1,862/1,879)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR002110 : Ankyrin repeat
IPR020683 : Ankyrin repeat-containing domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
pero 9, nucl 8, cyto 6.5, plas 5, cyto_mito 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0040117)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK155016
Equus
sp. (Horse) : ENSECAT00000010727
Monodelphis
sp. (Opossum) : ENSMODT00000026552
Pongo
sp. (Orangutan) : ENSPPYT00000011734
Rattus
sp. (Rat) : ENSRNOT00000025913
Macaca
sp. (Macaque) : XM_001109319
Bos
sp. (Cow) : XM_610447
Danio
sp. (Zebrafish) : XM_688922
Canis
sp. (Dog) : XM_850082
Pan
sp. (Chimpanzee) : XR_021808
Equus
sp. (Horse) : XR_044611
HIX0040117
HIT000195441
(
M31732
)
(B-cell lymphoma 3 protein; BCL-3; Proto-oncogene BCL3;)
genome : 45,252,031 - 45,263,300 (11,270)
query : 1 - 1,813 (1,813/1,813)
9 exons
identity = 0.993
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.979)3'
coverage = 1.000
InterPro :
IPR002110 : Ankyrin repeat
IPR020683 : Ankyrin repeat-containing domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
pero 9, nucl 8, cyto 6.5, plas 5, cyto_mito 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0040117)
HIX0040117
HIT000542421 (
ENST00000444487
)
(B-cell lymphoma 3 protein; BCL-3; Proto-oncogene BCL3;)
genome : 45,254,578 - 45,262,720 (8,143)
query : 1 - 923 (923/923)
8 exons
identity = 0.994
5'(1.000;1.000;1.000;1.000;1.000;0.991;0.966;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 9, cyto 9, cyto_nucl 9, pero 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0040117)
HIX0040117
HIT000428319
(
AK309453
)
(B-cell lymphoma 3 protein; BCL-3; Proto-oncogene BCL3;)
genome : 45,258,406 - 45,263,022 (4,617)
query : 1 - 1,428 (1,428/1,428)
8 exons
identity = 0.997
5'(1.000;0.991;1.000;1.000;1.000;1.000;1.000;
0.991)3'
coverage = 1.000
InterPro :
IPR002110 : Ankyrin repeat
IPR020683 : Ankyrin repeat-containing domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
pero 8.5, mito_pero 7.5, extr 5.5, cyto 5, mito 5,
E.R._mito 4.83333, extr_plas 4.5, nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0040117)
HIX0040117
HIT000577799 (
ENST00000473468
)
(B-cell lymphoma 3 protein; BCL-3; Proto-oncogene BCL3;)
genome : 45,258,406 - 45,260,425 (2,020)
query : 1 - 587 (587/587)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito_pero 7.66667, mito 7, extr 6, pero 6,
E.R._mito 5.16667, nucl 5, cyto 5, cyto_nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0040117)
HIX0040117
HIT000569073 (
ENST00000464319
)
(B-cell lymphoma 3 protein; BCL-3; Proto-oncogene BCL3;)
genome : 45,259,402 - 45,260,621 (1,220)
query : 1 - 439 (439/439)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 22, plas 4, cyto 2, cysk_plas 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0040117)
HIX0040117
HIT000578596 (
ENST00000474300
)
(B-cell lymphoma 3 protein; BCL-3; Proto-oncogene BCL3;)
genome : 45,260,846 - 45,263,082 (2,237)
query : 1 - 819 (819/819)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 16, cyto 10.5, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0040117)
HIX0040117
HIT000581961 (
ENST00000477832
)
(B-cell lymphoma 3 protein; BCL-3; Proto-oncogene BCL3;)
genome : 45,260,914 - 45,261,820 (907)
query : 1 - 385 (385/385)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, mito 9, cyto 4.5, cyto_nucl 4.5,
E.R._mito 4.5, mito_pero 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0040117)
HIX0040117
HIT000577804 (
ENST00000473473
)
(B-cell lymphoma 3 protein; BCL-3; Proto-oncogene BCL3;)
genome : 45,261,785 - 45,262,815 (1,031)
query : 1 - 445 (445/445)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, cyto_nucl 5.5, nucl 4, mito 4, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0040117)
HIX0212961
HIT000616621 (
ENST00000517218
)
(Hypothetical short protein.)
genome : 45,268,207 - 45,268,357 (151)
query : 1 - 151 (151/151)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0212961)
HIX0174538
HIT000523065 (
ENST00000425131
)
(Conserved hypothetical protein.)
genome : 45,268,405 - 45,268,721 (317)
query : 1 - 317 (317/317)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17, cyto 6.5, cyto_nucl 5.16667,
cyto_pero 4.83333, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0174538)
HIX0202847
HIT000203924 (
NM_012116
)
(Signal transduction protein CBL-C; RING finger protein 57; SH3-binding protein CBL-3; SH3-binding protein CBL-C;)
genome : 45,281,126 - 45,303,903 (22,778)
query : 1 - 1,591 (1,591/1,591)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30.5, cyto_nucl 16.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202847)
HIX0202847
HIT000559786 (
NM_001130852
)
(Signal transduction protein CBL-C; RING finger protein 57; SH3-binding protein CBL-3; SH3-binding protein CBL-C;)
genome : 45,281,126 - 45,303,903 (22,778)
query : 1 - 1,453 (1,453/1,453)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30.5, cyto_nucl 16.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202847)
HIX0202847
HIT000070109
(
AF117646
)
Representative transcript
(Signal transduction protein CBL-C; RING finger protein 57; SH3-binding protein CBL-3; SH3-binding protein CBL-C;)
genome : 45,281,126 - 45,303,896 (22,771)
query : 1 - 1,584 (1,584/1,584)
11 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.993;1.000;1.000;0.989)3'
coverage = 1.000
InterPro :
IPR000980 : SH2 domain
IPR003153 : Adaptor protein Cbl, N-terminal helical
IPR011992 : EF-hand domain pair
IPR014741 : Adaptor protein Cbl, EF hand-like
IPR014742 : Adaptor protein Cbl, SH2-like
IPR017907 : Zinc finger, RING-type, conserved site
IPR024159 : Adaptor protein Cbl, PTB domain
IPR024162 : Adaptor protein Cbl
GO :
0001784 : Molecular Function : phosphotyrosine binding
0004842 : Molecular Function : ubiquitin-protein transferase activity
0004871 : Molecular Function : signal transducer activity
0005509 : Molecular Function : calcium ion binding
0005515 : Molecular Function : protein binding
0005634 : Cellular Component : nucleus
0007166 : Biological Process : cell surface receptor signaling pathway
0023051 : Biological Process : regulation of signaling
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30.5, cyto_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202847)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK010228
Rattus
sp. (Rat) : BC105776
Bos
sp. (Cow) : BC149567
Tetraodon
sp. (Tetraodon) : CR731407
Equus
sp. (Horse) : ENSECAT00000019176
Oryzias
sp. (Medaka) : ENSORLT00000018206
Pongo
sp. (Orangutan) : ENSPPYT00000011735
Takifugu
sp. (Fugu) : SINFRUT00000156955
Macaca
sp. (Macaque) : XM_001109370
Monodelphis
sp. (Opossum) : XM_001375131
Canis
sp. (Dog) : XM_850078
Pan
sp. (Chimpanzee) : XR_023834
HIX0202847
HIT000070110
(
AF117647
)
(Signal transduction protein CBL-C; RING finger protein 57; SH3-binding protein CBL-3; SH3-binding protein CBL-C;)
genome : 45,281,126 - 45,303,896 (22,771)
query : 1 - 1,446 (1,446/1,446)
10 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.993;
1.000;1.000;0.989)3'
coverage = 1.000
InterPro :
IPR000980 : SH2 domain
IPR003153 : Adaptor protein Cbl, N-terminal helical
IPR011992 : EF-hand domain pair
IPR014741 : Adaptor protein Cbl, EF hand-like
IPR014742 : Adaptor protein Cbl, SH2-like
IPR017907 : Zinc finger, RING-type, conserved site
IPR024159 : Adaptor protein Cbl, PTB domain
IPR024162 : Adaptor protein Cbl
GO :
0001784 : Molecular Function : phosphotyrosine binding
0004842 : Molecular Function : ubiquitin-protein transferase activity
0004871 : Molecular Function : signal transducer activity
0005509 : Molecular Function : calcium ion binding
0005515 : Molecular Function : protein binding
0005634 : Cellular Component : nucleus
0007166 : Biological Process : cell surface receptor signaling pathway
0023051 : Biological Process : regulation of signaling
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30.5, cyto_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202847)
HIX0202847
HIT000110551 (
ENST00000270279
)
(Signal transduction protein CBL-C; RING finger protein 57; SH3-binding protein CBL-3; SH3-binding protein CBL-C;)
genome : 45,281,126 - 45,303,891 (22,766)
query : 1 - 1,579 (1,579/1,579)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30.5, cyto_nucl 16.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202847)
HIX0202847
HIT000134135 (
ENST00000341505
)
(Signal transduction protein CBL-C; RING finger protein 57; SH3-binding protein CBL-3; SH3-binding protein CBL-C;)
genome : 45,281,126 - 45,303,891 (22,766)
query : 1 - 1,441 (1,441/1,441)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30.5, cyto_nucl 16.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202847)
HIX0202847
HIT000058937
(
AB028645
)
(Signal transduction protein CBL-C; RING finger protein 57; SH3-binding protein CBL-3; SH3-binding protein CBL-C;)
genome : 45,281,148 - 45,303,891 (22,744)
query : 1 - 1,557 (1,557/1,575)
11 exons
identity = 0.998
5'(1.000;1.000;1.000;0.984;1.000;1.000;1.000;
0.993;1.000;1.000;1.000)3'
coverage = 0.999
InterPro :
IPR000980 : SH2 domain
IPR003153 : Adaptor protein Cbl, N-terminal helical
IPR011992 : EF-hand domain pair
IPR014741 : Adaptor protein Cbl, EF hand-like
IPR014742 : Adaptor protein Cbl, SH2-like
IPR017907 : Zinc finger, RING-type, conserved site
IPR024159 : Adaptor protein Cbl, PTB domain
IPR024162 : Adaptor protein Cbl
GO :
0001784 : Molecular Function : phosphotyrosine binding
0004842 : Molecular Function : ubiquitin-protein transferase activity
0004871 : Molecular Function : signal transducer activity
0005509 : Molecular Function : calcium ion binding
0005515 : Molecular Function : protein binding
0005634 : Cellular Component : nucleus
0007166 : Biological Process : cell surface receptor signaling pathway
0023051 : Biological Process : regulation of signaling
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30.5, cyto_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202847)
HIX0202847
HIT000040645
(
BC028915
)
(Signal transduction protein CBL-C; RING finger protein 57; SH3-binding protein CBL-3; SH3-binding protein CBL-C;)
genome : 45,281,168 - 45,303,891 (22,724)
query : 1 - 1,537 (1,537/1,564)
11 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.993;1.000;1.000;1.000)3'
coverage = 0.999
InterPro :
IPR000980 : SH2 domain
IPR003153 : Adaptor protein Cbl, N-terminal helical
IPR011992 : EF-hand domain pair
IPR014741 : Adaptor protein Cbl, EF hand-like
IPR014742 : Adaptor protein Cbl, SH2-like
IPR017907 : Zinc finger, RING-type, conserved site
IPR024159 : Adaptor protein Cbl, PTB domain
IPR024162 : Adaptor protein Cbl
GO :
0001784 : Molecular Function : phosphotyrosine binding
0004842 : Molecular Function : ubiquitin-protein transferase activity
0004871 : Molecular Function : signal transducer activity
0005509 : Molecular Function : calcium ion binding
0005515 : Molecular Function : protein binding
0005634 : Cellular Component : nucleus
0007166 : Biological Process : cell surface receptor signaling pathway
0023051 : Biological Process : regulation of signaling
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30.5, cyto_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202847)
HIX0202889
HIT000202261 (
NM_005581
)
(Basal cell adhesion molecule; Auberger B antigen; B-CAM cell surface glycoprotein; F8/G253 antigen; Lutheran antigen; Lutheran blood group glycoprotein; AltName: CD_antigen=CD239; Precursor;)
genome : 45,312,316 - 45,324,678 (12,363)
query : 1 - 2,453 (2,453/2,470)
15 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 11.5, extr_plas 8.5, plas 4.5, mito_pero 4.5,
E.R. 4, pero 4, mito 3, nucl 2, cyto 2, cyto_nucl 2,
E.R._golg 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202889)
HIX0202889
HIT000365226 (
NM_001013257
)
(Basal cell adhesion molecule; Auberger B antigen; B-CAM cell surface glycoprotein; F8/G253 antigen; Lutheran antigen; Lutheran blood group glycoprotein; AltName: CD_antigen=CD239; Precursor;)
genome : 45,312,316 - 45,324,678 (12,363)
query : 1 - 3,431 (3,431/3,448)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 11.5, extr_plas 8.5, plas 4.5, mito_pero 4.5,
E.R. 4, pero 4, mito 3, nucl 2, cyto 2, cyto_nucl 2,
E.R._golg 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202889)
HIX0202889
HIT000701489 (
ENST00000589651
)
(Basal cell adhesion molecule; Auberger B antigen; B-CAM cell surface glycoprotein; F8/G253 antigen; Lutheran antigen; Lutheran blood group glycoprotein; AltName: CD_antigen=CD239; Precursor;)
genome : 45,312,328 - 45,323,852 (11,525)
query : 1 - 2,686 (2,686/2,686)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 11.5, extr_plas 8.5, plas 4.5, mito_pero 4.5,
E.R. 4, pero 4, mito 3, nucl 2, cyto 2, cyto_nucl 2,
E.R._golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202889)
HIX0202889
HIT000475450 (
ENST00000391955
)
(Basal cell adhesion molecule; Auberger B antigen; B-CAM cell surface glycoprotein; F8/G253 antigen; Lutheran antigen; Lutheran blood group glycoprotein; AltName: CD_antigen=CD239; Precursor;)
genome : 45,312,338 - 45,323,610 (11,273)
query : 1 - 2,434 (2,434/2,434)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 11.5, extr_plas 8.5, plas 4.5, mito_pero 4.5,
E.R. 4, pero 4, mito 3, nucl 2, cyto 2, cyto_nucl 2,
E.R._golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202889)
HIX0202889
HIT000110547 (
ENST00000270233
)
(Basal cell adhesion molecule; Auberger B antigen; B-CAM cell surface glycoprotein; F8/G253 antigen; Lutheran antigen; Lutheran blood group glycoprotein; AltName: CD_antigen=CD239; Precursor;)
genome : 45,312,360 - 45,324,671 (12,312)
query : 1 - 2,402 (2,402/2,402)
15 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 11.5, extr_plas 8.5, plas 4.5, mito_pero 4.5,
E.R. 4, pero 4, mito 3, nucl 2, cyto 2, cyto_nucl 2,
E.R._golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202889)
HIX0202889
HIT000323954
(
X83425
)
(Basal cell adhesion molecule; Auberger B antigen; B-CAM cell surface glycoprotein; F8/G253 antigen; Lutheran antigen; Lutheran blood group glycoprotein; AltName: CD_antigen=CD239; Precursor;)
genome : 45,312,360 - 45,324,671 (12,312)
query : 1 - 2,402 (2,402/2,402)
15 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.993;1.000;1.000;
1.000)3'
coverage = 1.000
InterPro :
IPR003598 : Immunoglobulin subtype 2
IPR013162 : CD80-like, immunoglobulin C2-set
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 11.5, extr_plas 8.5, plas 4.5, mito_pero 4.5,
E.R. 4, pero 4, mito 3, nucl 2, cyto 2, cyto_nucl 2,
E.R._golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202889)
HIX0202889
HIT000094590
(
BC036745
)
(Basal cell adhesion molecule; Auberger B antigen; B-CAM cell surface glycoprotein; F8/G253 antigen; Lutheran antigen; Lutheran blood group glycoprotein; AltName: CD_antigen=CD239; Precursor;)
genome : 45,312,365 - 45,324,675 (12,311)
query : 1 - 1,703 (1,703/1,760)
12 exons
identity = 0.999
5'(1.000;1.000;0.996;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.996)3'
coverage = 1.000
InterPro :
IPR003598 : Immunoglobulin subtype 2
IPR013162 : CD80-like, immunoglobulin C2-set
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, cyto 5.5, nucl 5, lyso 4, cyto_pero 3.5,
mito_nucl 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202889)
HIX0202889
HIT000700143 (
ENST00000588303
)
(Basal cell adhesion molecule; Auberger B antigen; B-CAM cell surface glycoprotein; F8/G253 antigen; Lutheran antigen; Lutheran blood group glycoprotein; AltName: CD_antigen=CD239; Precursor;)
genome : 45,312,372 - 45,315,303 (2,932)
query : 1 - 914 (914/914)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 27, nucl 2, cyto 2, cyto_nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202889)
HIX0202889
HIT000323788
(
X80026
)
(Basal cell adhesion molecule; Auberger B antigen; B-CAM cell surface glycoprotein; F8/G253 antigen; Lutheran antigen; Lutheran blood group glycoprotein; AltName: CD_antigen=CD239; Precursor;)
genome : 45,312,376 - 45,323,610 (11,235)
query : 1 - 2,396 (2,396/2,396)
13 exons
identity = 0.997
5'(1.000;1.000;1.000;1.000;1.000;0.984;1.000;
0.987;1.000;1.000;1.000;0.993;0.999)3'
coverage = 1.000
InterPro :
IPR003598 : Immunoglobulin subtype 2
IPR013162 : CD80-like, immunoglobulin C2-set
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 12.5, extr_plas 9.5, plas 5.5, pero 4.5,
mito_pero 4, mito 2.5, nucl 2, cyto 2, E.R. 2, cyto_nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202889)
HIX0202889
HIT000053461
(
BC050450
)
Representative transcript
(Basal cell adhesion molecule; Auberger B antigen; B-CAM cell surface glycoprotein; F8/G253 antigen; Lutheran antigen; Lutheran blood group glycoprotein; AltName: CD_antigen=CD239; Precursor;)
genome : 45,312,377 - 45,324,672 (12,296)
query : 1 - 2,386 (2,386/2,479)
15 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.998)3'
coverage = 1.000
InterPro :
IPR003598 : Immunoglobulin subtype 2
IPR013162 : CD80-like, immunoglobulin C2-set
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 11.5, extr_plas 8.5, plas 4.5, mito_pero 4.5,
E.R. 4, pero 4, mito 3, nucl 2, cyto 2, cyto_nucl 2,
E.R._golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202889)
Ortholog candidate ( ->
Evola
)
Bos
sp. (Cow) : AF270512
Mus
sp. (Mouse) : BC004826
Rattus
sp. (Rat) : BC072479
Pongo
sp. (Orangutan) : ENSPPYT00000011736
Pan
sp. (Chimpanzee) : XM_001161955
Equus
sp. (Horse) : XM_001500295
Canis
sp. (Dog) : XM_541571
Macaca
sp. (Macaque) : XR_013004
HIX0202889
HIT000703342 (
ENST00000591520
)
(Basal cell adhesion molecule; Auberger B antigen; B-CAM cell surface glycoprotein; F8/G253 antigen; Lutheran antigen; Lutheran blood group glycoprotein; AltName: CD_antigen=CD239; Precursor;)
genome : 45,312,378 - 45,317,561 (5,184)
query : 1 - 878 (878/878)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, mito 8, extr_plas 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202889)
HIX0202889
HIT000714814
(
HE572749
)
(Basal cell adhesion molecule; Auberger B antigen; B-CAM cell surface glycoprotein; F8/G253 antigen; Lutheran antigen; Lutheran blood group glycoprotein; AltName: CD_antigen=CD239; Precursor;)
genome : 45,312,382 - 45,324,079 (11,698)
query : 1 - 1,881 (1,881/1,887)
14 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.994;1.000;1.000;1.000;0.993;1.000;1.000)3'
coverage = 0.997
InterPro :
IPR003598 : Immunoglobulin subtype 2
IPR013162 : CD80-like, immunoglobulin C2-set
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 11.5, extr_plas 8.5, plas 4.5, mito_pero 4.5,
E.R. 4, pero 4, mito 3, nucl 2, cyto 2, cyto_nucl 2,
E.R._golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202889)
HIX0202889
HIT000700443 (
ENST00000588603
)
(Basal cell adhesion molecule; Auberger B antigen; B-CAM cell surface glycoprotein; F8/G253 antigen; Lutheran antigen; Lutheran blood group glycoprotein; AltName: CD_antigen=CD239; Precursor;)
genome : 45,312,387 - 45,316,210 (3,824)
query : 1 - 904 (904/904)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202889)
HIX0202889
HIT000701943 (
ENST00000590108
)
(Basal cell adhesion molecule; Auberger B antigen; B-CAM cell surface glycoprotein; F8/G253 antigen; Lutheran antigen; Lutheran blood group glycoprotein; AltName: CD_antigen=CD239; Precursor;)
genome : 45,316,405 - 45,316,924 (520)
query : 1 - 429 (429/429)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, cyto 7, cyto_nucl 5.33333, cyto_pero 4.33333,
nucl 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202889)
HIX0202889
HIT000702031 (
ENST00000590196
)
(Basal cell adhesion molecule; Auberger B antigen; B-CAM cell surface glycoprotein; F8/G253 antigen; Lutheran antigen; Lutheran blood group glycoprotein; AltName: CD_antigen=CD239; Precursor;)
genome : 45,316,695 - 45,322,059 (5,365)
query : 1 - 518 (518/518)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 11, cyto_nucl 8.16667, nucl 8, cyto 6, mito 6,
cyto_pero 4.66667
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202889)
HIX0202889
HIT000332679
(
AY927517
)
(Conserved hypothetical protein.)
genome : 45,316,774 - 45,317,388 (615)
query : 2 - 486 (485/486)
2 exons
identity = 0.990
5'(0.992;0.989)3'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, nucl 7, cyto_nucl 6.5, cyto 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202889)
HIX0202889
HIT000701396 (
ENST00000589558
)
(Basal cell adhesion molecule; Auberger B antigen; B-CAM cell surface glycoprotein; F8/G253 antigen; Lutheran antigen; Lutheran blood group glycoprotein; AltName: CD_antigen=CD239; Precursor;)
genome : 45,321,788 - 45,322,501 (714)
query : 1 - 611 (611/611)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, nucl 9, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202889)
HIX0202889
HIT000700554 (
ENST00000588714
)
(Basal cell adhesion molecule; B-CAM cell surface glycoprotein; Lutheran antigen; AltName: CD_antigen=CD239; Precursor;)
genome : 45,322,504 - 45,323,317 (814)
query : 1 - 723 (723/723)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202889)
HIX0202889
HIT000702452 (
ENST00000590624
)
(Conserved hypothetical protein.)
genome : 45,323,590 - 45,324,673 (1,084)
query : 1 - 991 (991/991)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 13, cyto_nucl 7.5, cyto 7, extr 6, nucl 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202889)
HIX0202889
HIT000389780
(
BC128254
)
(Basal cell adhesion molecule; Auberger B antigen; B-CAM cell surface glycoprotein; F8/G253 antigen; Lutheran antigen; Lutheran blood group glycoprotein; AltName: CD_antigen=CD239; Precursor;)
genome : 45,323,998 - 45,324,352 (355)
query : 12 - 273 (262/285)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 0.919
SOSUI :
This sequence is too short.
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202889)
HIX0202813
HIT000397646 (
NM_001042724
)
(Poliovirus receptor-related protein 2; Herpes virus entry mediator B; Herpesvirus entry mediator B; HveB; Nectin-2; AltName: CD_antigen=CD112; Precursor;)
genome : 45,349,393 - 45,392,485 (43,093)
query : 1 - 2,856 (2,856/2,869)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.984;
1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 11, lyso 10, golg 7, E.R. 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202813)
HIX0202813
HIT000199731 (
NM_002856
)
(Poliovirus receptor-related protein 2 isoform alpha precursor.)
genome : 45,349,393 - 45,382,198 (32,806)
query : 1 - 2,151 (2,151/2,166)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 12, golg 8, lyso 7, E.R._golg 7, E.R. 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202813)
HIX0202813
HIT000106305 (
ENST00000252485
)
(Poliovirus receptor-related protein 2 isoform alpha precursor.)
genome : 45,349,432 - 45,382,198 (32,767)
query : 1 - 2,112 (2,112/2,112)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 12, golg 8, lyso 7, E.R._golg 7, E.R. 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202813)
HIX0202813
HIT000424127
(
AK291330
)
(Poliovirus receptor-related protein 2 isoform alpha precursor.)
genome : 45,349,567 - 45,382,059 (32,493)
query : 1 - 1,838 (1,838/1,838)
6 exons
identity = 0.999
5'(1.000;1.000;0.997;1.000;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR013151 : Immunoglobulin
IPR013162 : CD80-like, immunoglobulin C2-set
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 12, golg 8, lyso 7, E.R._golg 7, E.R. 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202813)
HIX0202813
HIT000031420
(
BC003091
)
(Poliovirus receptor-related protein 2 isoform alpha precursor.)
genome : 45,349,585 - 45,382,190 (32,606)
query : 1 - 1,951 (1,951/1,968)
6 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR013151 : Immunoglobulin
IPR013162 : CD80-like, immunoglobulin C2-set
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 12, golg 8, lyso 7, E.R._golg 7, E.R. 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202813)
HIX0202813
HIT000064804
(
AF058448
)
(Poliovirus receptor-related protein 2 isoform alpha precursor.)
genome : 45,349,634 - 45,382,195 (32,562)
query : 1 - 1,907 (1,907/1,928)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR013151 : Immunoglobulin
IPR013162 : CD80-like, immunoglobulin C2-set
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 12, golg 8, lyso 7, E.R._golg 7, E.R. 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202813)
HIX0202813
HIT000106304 (
ENST00000252483
)
(Poliovirus receptor-related protein 2; Herpes virus entry mediator B; Herpesvirus entry mediator B; HveB; Nectin-2; AltName: CD_antigen=CD112; Precursor;)
genome : 45,349,783 - 45,392,485 (42,703)
query : 1 - 2,466 (2,466/2,466)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 11, lyso 10, golg 7, E.R. 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202813)
HIX0202813
HIT000323791
(
X80038
)
Representative transcript
(Poliovirus receptor-related protein 2; Herpes virus entry mediator B; Herpesvirus entry mediator B; HveB; Nectin-2; AltName: CD_antigen=CD112; Precursor;)
genome : 45,349,783 - 45,391,633 (41,851)
query : 1 - 1,614 (1,614/1,614)
9 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.984;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR013162 : CD80-like, immunoglobulin C2-set
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 11, lyso 10, golg 7, E.R. 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202813)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : BC059941
Rattus
sp. (Rat) : BC090075
Bos
sp. (Cow) : BC118434
Danio
sp. (Zebrafish) : CU638762
Macaca
sp. (Macaque) : DQ851093
Monodelphis
sp. (Opossum) : ENSMODT00000026557
Pongo
sp. (Orangutan) : ENSPPYT00000011737
Tetraodon
sp. (Tetraodon) : GSTENT00015290001
Takifugu
sp. (Fugu) : SINFRUT00000167230
Equus
sp. (Horse) : XM_001502277
Gallus
sp. (Chicken) : XM_417892
Pan
sp. (Chimpanzee) : XM_512741
Danio
sp. (Zebrafish) : XM_684217
Canis
sp. (Dog) : XM_847558
HIX0202813
HIT000267668
(
CR456818
)
(Poliovirus receptor-related protein 2 isoform alpha precursor.)
genome : 45,349,783 - 45,381,873 (32,091)
query : 1 - 1,436 (1,436/1,440)
6 exons
identity = 0.999
5'(1.000;1.000;0.997;1.000;1.000;1.000)3'
coverage = 0.997
InterPro :
IPR013151 : Immunoglobulin
IPR013162 : CD80-like, immunoglobulin C2-set
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 12, golg 8, lyso 7, E.R._golg 7, E.R. 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202813)
HIX0202813
HIT000703403 (
ENST00000591581
)
(Poliovirus receptor-related protein 2 isoform alpha precursor.)
genome : 45,375,110 - 45,382,195 (7,086)
query : 1 - 950 (950/950)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14, cyto 14, cyto_nucl 14
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202813)
HIX0202813
HIT000699230 (
ENST00000587386
)
(Poliovirus receptor-related protein 2 isoform alpha precursor.)
genome : 45,377,199 - 45,377,946 (748)
query : 1 - 452 (452/452)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto_nucl 15, extr 7, cyto 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202813)
HIX0202813
HIT000697457 (
ENST00000585601
)
(Poliovirus receptor-related protein 2 isoform alpha precursor.)
genome : 45,377,636 - 45,382,195 (4,560)
query : 1 - 650 (650/650)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, cyto 7.5, cyto_nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202813)
HIX0226220
HIT000697266 (
ENST00000585408
)
(Conserved hypothetical protein.)
genome : 45,385,284 - 45,394,133 (8,850)
query : 1 - 426 (426/426)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, mito 7, nucl 2.5, cyto_nucl 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0226220)
HIX0202813
HIT000703839_02 (
ENST00000592018
)
(Hypothetical protein.)
genome : 45,385,595 - 45,392,151 (6,557)
query : 1 - 812 (812/812)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 28, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202813)
HIX0202813
HIT000567341_02 (
ENST00000462510
)
(Hypothetical protein.)
genome : 45,389,195 - 45,391,633 (2,439)
query : 1 - 417 (417/417)
3 exons
identity = 0.964
5'(0.905;0.954;0.981)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 10, cyto_nucl 8.83333, nucl 8.5, mito 7, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202813)
HIX0040271
HIT000088670
(
BC015426
)
Representative transcript
(Conserved hypothetical protein.)
genome : 45,389,552 - 45,390,909 (1,358)
query : 1 - 1,358 (1,358/1,373)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23.5, cyto_nucl 15.5, cyto 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0040271)
HIX0015214
HIT000701092 (
ENST00000589253
)
(Non-protein coding transcript.)
genome : 45,393,826 - 45,394,782 (957)
query : 1 - 207 (207/207)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015214)
HIX0015214
HIT000202735 (
NM_006114
)
(Mitochondrial import receptor subunit TOM40 homolog; Protein Haymaker; Translocase of outer membrane 40 kDa subunit homolog; p38.5;)
genome : 45,394,477 - 45,406,946 (12,470)
query : 1 - 1,707 (1,707/1,724)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 10, cyto 8, mito_nucl 8, extr 7, cyto_mito 7
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015214)
HIX0015214
HIT000559517 (
NM_001128916
)
(Mitochondrial import receptor subunit TOM40 homolog; Protein Haymaker; Translocase of outer membrane 40 kDa subunit homolog; p38.5;)
genome : 45,394,477 - 45,406,946 (12,470)
query : 1 - 1,710 (1,710/1,727)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 10, cyto 8, mito_nucl 8, extr 7, cyto_mito 7
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015214)
HIX0015214
HIT000559518 (
NM_001128917
)
(Mitochondrial import receptor subunit TOM40 homolog; Protein Haymaker; Translocase of outer membrane 40 kDa subunit homolog; p38.5;)
genome : 45,394,477 - 45,406,946 (12,470)
query : 1 - 1,802 (1,802/1,819)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 10, cyto 8, mito_nucl 8, extr 7, cyto_mito 7
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015214)
HIX0015214
HIT000106307 (
ENST00000252487
)
(Mitochondrial import receptor subunit TOM40 homolog; Protein Haymaker; Translocase of outer membrane 40 kDa subunit homolog; p38.5;)
genome : 45,394,477 - 45,406,946 (12,470)
query : 1 - 1,707 (1,707/1,707)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 10, cyto 8, mito_nucl 8, extr 7, cyto_mito 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015214)
HIX0015214
HIT000505305 (
ENST00000405636
)
(Mitochondrial import receptor subunit TOM40 homolog; Protein Haymaker; Translocase of outer membrane 40 kDa subunit homolog; p38.5;)
genome : 45,394,477 - 45,406,935 (12,459)
query : 1 - 1,699 (1,699/1,699)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 10, cyto 8, mito_nucl 8, extr 7, cyto_mito 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015214)
HIX0015214
HIT000053160
(
BC047528
)
(Mitochondrial import receptor subunit TOM40 homolog.)
genome : 45,394,488 - 45,406,936 (12,449)
query : 3 - 3,410 (3,408/3,424)
9 exons
identity = 0.993
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.990)3'
coverage = 0.999
InterPro :
IPR023614 : Porin domain
IPR027246 : Eukaryotic porin/Tom40
GO :
0005741 : Cellular Component : mitochondrial outer membrane
0055085 : Biological Process : transmembrane transport
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12, extr 8, cyto 8, mito_nucl 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015214)
HIX0015214
HIT000704252 (
ENST00000592434
)
(Mitochondrial import receptor subunit TOM40 homolog.)
genome : 45,394,488 - 45,406,943 (12,456)
query : 1 - 3,415 (3,415/3,415)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12, extr 8, cyto 8, mito_nucl 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015214)
HIX0015214
HIT000524611 (
ENST00000426677
)
(Mitochondrial import receptor subunit TOM40 homolog; Protein Haymaker; Translocase of outer membrane 40 kDa subunit homolog; p38.5;)
genome : 45,394,493 - 45,406,885 (12,393)
query : 1 - 1,725 (1,725/1,725)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 10, cyto 8, mito_nucl 8, extr 7, cyto_mito 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015214)
HIX0015214
HIT000063723
(
AF043250
)
Representative transcript
(Mitochondrial import receptor subunit TOM40 homolog; Protein Haymaker; Translocase of outer membrane 40 kDa subunit homolog; p38.5;)
genome : 45,394,494 - 45,406,936 (12,443)
query : 1 - 1,681 (1,681/1,700)
10 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR023614 : Porin domain
IPR027246 : Eukaryotic porin/Tom40
GO :
0005741 : Cellular Component : mitochondrial outer membrane
0055085 : Biological Process : transmembrane transport
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 10, cyto 8, mito_nucl 8, extr 7, cyto_mito 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015214)
Ortholog candidate ( ->
Evola
)
Rattus
sp. (Rat) : AB162855
Mus
sp. (Mouse) : AK164570
Danio
sp. (Zebrafish) : BC053295
Danio
sp. (Zebrafish) : BC067589
Bos
sp. (Cow) : BC116105
Tetraodon
sp. (Tetraodon) : CR728838
Tetraodon
sp. (Tetraodon) : CR728939
Equus
sp. (Horse) : ENSECAT00000014954
Oryzias
sp. (Medaka) : ENSORLT00000007385
Oryzias
sp. (Medaka) : ENSORLT00000017122
Pongo
sp. (Orangutan) : ENSPPYT00000029337
Pan
sp. (Chimpanzee) : ENSPTRT00000020678
Takifugu
sp. (Fugu) : SINFRUT00000153039
Takifugu
sp. (Fugu) : SINFRUT00000181196
Macaca
sp. (Macaque) : XM_001109661
Monodelphis
sp. (Opossum) : XM_001365508
Canis
sp. (Dog) : XM_847540
HIX0015214
HIT000701487_02 (
ENST00000589649
)
(Mitochondrial import receptor subunit TOM40 homolog.)
genome : 45,394,494 - 45,397,324 (2,831)
query : 1 - 731 (731/731)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, nucl 11.5, cyto_nucl 11.5, cyto 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015214)
HIX0015214
HIT000030644
(
BC001779
)
(Mitochondrial import receptor subunit TOM40 homolog; Protein Haymaker; Translocase of outer membrane 40 kDa subunit homolog; p38.5;)
genome : 45,394,526 - 45,406,899 (12,374)
query : 1 - 1,707 (1,707/1,724)
9 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.998)3'
coverage = 1.000
InterPro :
IPR023614 : Porin domain
IPR027246 : Eukaryotic porin/Tom40
GO :
0005741 : Cellular Component : mitochondrial outer membrane
0055085 : Biological Process : transmembrane transport
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 10, cyto 8, mito_nucl 8, extr 7, cyto_mito 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015214)
HIX0015214
HIT000035683
(
BC012134
)
(Mitochondrial import receptor subunit TOM40 homolog; Protein Haymaker; Translocase of outer membrane 40 kDa subunit homolog; p38.5;)
genome : 45,394,526 - 45,406,899 (12,374)
query : 1 - 1,614 (1,614/1,631)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR023614 : Porin domain
IPR027246 : Eukaryotic porin/Tom40
GO :
0005741 : Cellular Component : mitochondrial outer membrane
0055085 : Biological Process : transmembrane transport
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 10, cyto 8, mito_nucl 8, extr 7, cyto_mito 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015214)
HIX0015214
HIT000032819
(
BC006413
)
(Mitochondrial import receptor subunit TOM40 homolog; Protein Haymaker; Translocase of outer membrane 40 kDa subunit homolog; p38.5;)
genome : 45,394,545 - 45,406,920 (12,376)
query : 1 - 1,617 (1,617/1,634)
10 exons
identity = 0.999
5'(1.000;0.996;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR023614 : Porin domain
IPR027246 : Eukaryotic porin/Tom40
GO :
0005741 : Cellular Component : mitochondrial outer membrane
0055085 : Biological Process : transmembrane transport
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 10, cyto 8, extr 7, mito_nucl 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015214)
HIX0015214
HIT000037888
(
BC017224
)
(Mitochondrial import receptor subunit TOM40 homolog; Protein Haymaker; Translocase of outer membrane 40 kDa subunit homolog; p38.5;)
genome : 45,394,574 - 45,406,946 (12,373)
query : 1 - 1,705 (1,705/1,722)
9 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;0.991;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR023614 : Porin domain
IPR027246 : Eukaryotic porin/Tom40
GO :
0005741 : Cellular Component : mitochondrial outer membrane
0055085 : Biological Process : transmembrane transport
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 10, cyto 8, mito_nucl 8, extr 7, cyto_mito 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015214)
HIX0015214
HIT000077165
(
AF316402
)
(Mitochondrial import receptor subunit TOM40 homolog; Protein Haymaker; Translocase of outer membrane 40 kDa subunit homolog; p38.5;)
genome : 45,394,663 - 45,406,892 (12,230)
query : 1 - 1,563 (1,563/1,563)
9 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.998)3'
coverage = 1.000
InterPro :
IPR023614 : Porin domain
IPR027246 : Eukaryotic porin/Tom40
GO :
0005741 : Cellular Component : mitochondrial outer membrane
0055085 : Biological Process : transmembrane transport
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 10, cyto 8, mito_nucl 8, extr 7, cyto_mito 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015214)
HIX0015214
HIT000664260_02 (
ENST00000550526
)
(Mitochondrial import receptor subunit TOM40 homolog.)
genome : 45,394,720 - 45,406,424 (11,705)
query : 14 - 1,045 (1,032/1,045)
9 exons
identity = 0.951
5'(0.916;0.971;0.968;0.971;0.972;0.935;0.987;
0.951;0.949)3'
coverage = 0.988
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, mito 12, cyto_nucl 11.5, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015214)
HIX0015214
HIT000077164
(
AF316401
)
(Mitochondrial import receptor subunit TOM40 homolog.)
genome : 45,394,812 - 45,406,739 (11,928)
query : 1 - 1,261 (1,261/1,261)
9 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.987;
0.990;0.998)3'
coverage = 1.000
InterPro :
IPR023614 : Porin domain
IPR027246 : Eukaryotic porin/Tom40
GO :
0005741 : Cellular Component : mitochondrial outer membrane
0055085 : Biological Process : transmembrane transport
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 11.3333, nucl 11, cyto 9.5, mito 7,
cyto_pero 6.66667
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015214)
HIX0015214
HIT000077162
(
AF316398
)
(Mitochondrial import receptor subunit TOM40 homolog.)
genome : 45,395,676 - 45,406,313 (10,638)
query : 1 - 673 (673/673)
8 exons
identity = 0.996
5'(1.000;1.000;1.000;1.000;0.992;1.000;0.981;
1.000)3'
coverage = 1.000
InterPro :
IPR023614 : Porin domain
IPR027246 : Eukaryotic porin/Tom40
GO :
0005741 : Cellular Component : mitochondrial outer membrane
0055085 : Biological Process : transmembrane transport
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14, cyto 11, cyto_nucl 9, nucl 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015214)
HIX0015214
HIT000077163
(
AF316399
)
(Mitochondrial import receptor subunit TOM40 homolog.)
genome : 45,396,088 - 45,406,935 (10,848)
query : 6 - 1,262 (1,257/1,303)
7 exons
identity = 0.979
5'(0.990;1.000;1.000;0.992;1.000;0.990;0.963)3'
coverage = 0.994
InterPro :
IPR023614 : Porin domain
IPR027246 : Eukaryotic porin/Tom40
GO :
0005741 : Cellular Component : mitochondrial outer membrane
0055085 : Biological Process : transmembrane transport
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 15, nucl 8.5, extr 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015214)
HIX0015214
HIT000703862 (
ENST00000592041
)
(Mitochondrial import receptor subunit TOM40 homolog.)
genome : 45,397,086 - 45,406,389 (9,304)
query : 1 - 707 (707/707)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 12, cyto 11, cyto_nucl 10.5, nucl 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015214)
HIX0015216
HIT000106306 (
ENST00000252486
)
(Apolipoprotein E; Apo-E; Precursor;)
genome : 45,409,011 - 45,412,650 (3,640)
query : 1 - 1,208 (1,208/1,208)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 25, mito 3, E.R. 2, lyso 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015216)
HIX0015216
HIT000197093 (
NM_000041
)
(Apolipoprotein E; Apo-E; Precursor;)
genome : 45,409,039 - 45,412,650 (3,612)
query : 1 - 1,180 (1,180/1,223)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 25, mito 3, E.R. 2, lyso 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015216)
HIX0015216
HIT000544930 (
ENST00000446996
)
(Apolipoprotein E; Apo-E; Precursor;)
genome : 45,409,048 - 45,412,201 (3,154)
query : 1 - 737 (737/737)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 27, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015216)
HIX0015216
HIT000433764
(
AK314898
)
(Apolipoprotein E; Apo-E; Precursor;)
genome : 45,409,053 - 45,412,507 (3,455)
query : 1 - 1,023 (1,023/1,023)
4 exons
identity = 0.999
5'(1.000;0.985;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000074 : Apolipoprotein A/E
GO :
0005576 : Cellular Component : extracellular region
0006869 : Biological Process : lipid transport
0008289 : Molecular Function : lipid binding
0042157 : Biological Process : lipoprotein metabolic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 25, mito 3, E.R. 2, lyso 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015216)
HIX0015216
HIT000427412
(
AK308546
)
(Conserved hypothetical protein.)
genome : 45,409,053 - 45,410,583 (1,531)
query : 1 - 771 (771/771)
2 exons
identity = 0.996
5'(1.000;0.996)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 13, nucl 9, cyto_nucl 7.66667, mito_pero 7.66667,
cyto_pero 4.16667
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015216)
HIX0015216
HIT000589424 (
ENST00000485628
)
(Conserved hypothetical protein.)
genome : 45,409,053 - 45,410,583 (1,531)
query : 1 - 771 (771/771)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015216)
HIX0015216
HIT000194163
(
M12529
)
(Apolipoprotein E; Apo-E; Precursor;)
genome : 45,409,061 - 45,412,649 (3,589)
query : 1 - 1,157 (1,157/1,157)
4 exons
identity = 0.995
5'(1.000;1.000;0.990;0.995)3'
coverage = 1.000
InterPro :
IPR000074 : Apolipoprotein A/E
GO :
0005576 : Cellular Component : extracellular region
0006869 : Biological Process : lipid transport
0008289 : Molecular Function : lipid binding
0042157 : Biological Process : lipoprotein metabolic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 25, mito 3, E.R. 2, lyso 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015216)
HIX0015216
HIT000191348
(
K00396
)
(Apolipoprotein E; Apo-E; Precursor;)
genome : 45,409,064 - 45,412,649 (3,586)
query : 3 - 1,156 (1,154/1,156)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 0.998
InterPro :
IPR000074 : Apolipoprotein A/E
GO :
0005576 : Cellular Component : extracellular region
0006869 : Biological Process : lipid transport
0008289 : Molecular Function : lipid binding
0042157 : Biological Process : lipoprotein metabolic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 25, mito 3, E.R. 2, lyso 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015216)
HIX0015216
HIT000532086 (
ENST00000434152
)
(Apolipoprotein E; Apo-E; Precursor;)
genome : 45,409,069 - 45,412,282 (3,214)
query : 1 - 864 (864/864)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15, cyto 13, nucl 11, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015216)
HIX0015216
HIT000031595
(
BC003557
)
(Apolipoprotein E; Apo-E; Precursor;)
genome : 45,409,077 - 45,412,650 (3,574)
query : 1 - 1,142 (1,142/1,186)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000074 : Apolipoprotein A/E
GO :
0005576 : Cellular Component : extracellular region
0006869 : Biological Process : lipid transport
0008289 : Molecular Function : lipid binding
0042157 : Biological Process : lipoprotein metabolic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 25, mito 3, E.R. 2, lyso 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015216)
HIX0015216
HIT000523652 (
ENST00000425718
)
(Apolipoprotein E; Apo-E; Precursor;)
genome : 45,409,617 - 45,412,211 (2,595)
query : 1 - 923 (923/923)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 28, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015216)
HIX0015216
HIT000327970
(
Z70760
)
(Apolipoprotein E; Apo-E; Precursor;)
genome : 45,409,858 - 45,411,210 (1,353)
query : 14 - 274 (261/275)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 0.949
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015216)
HIX0015216
HIT000320855
(
X00199
)
(Apolipoprotein E; Apo-E; Precursor;)
genome : 45,411,163 - 45,412,270 (1,108)
query : 1 - 528 (528/528)
2 exons
identity = 0.996
5'(0.979;0.998)3'
coverage = 1.000
InterPro :
IPR000074 : Apolipoprotein A/E
GO :
0005576 : Cellular Component : extracellular region
0006869 : Biological Process : lipid transport
0008289 : Molecular Function : lipid binding
0042157 : Biological Process : lipoprotein metabolic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto_nucl 9, nucl 7.5, cyto 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015216)
HIX0015216
HIT000245954
(
AJ249921
)
(Conserved hypothetical protein.)
genome : 45,412,632 - 45,418,225 (5,594)
query : 1 - 5,575 (5,575/5,575)
1 exon
identity = 0.991
5'(0.991)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015216)
HIX0015216
HIT000700590 (
ENST00000588750
)
(Apolipoprotein C-I; Apo-CIB; ApoC-IB; Apolipoprotein C1; Contains: Truncated apolipoprotein C-I; Apo-CIB'; ApoC-IB'; Precursor;)
genome : 45,417,504 - 45,422,599 (5,096)
query : 1 - 689 (689/689)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015216)
HIX0015216
HIT000076907
(
AF308154
)
(Non-protein coding transcript.)
genome : 45,417,577 - 45,418,151 (575)
query : 1 - 255 (255/255)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015216)
HIX0015216
HIT000054109
(
BC055093
)
Representative transcript
(Apolipoprotein C-I; Apo-CIB; ApoC-IB; Apolipoprotein C1; Contains: Truncated apolipoprotein C-I; Apo-CIB'; ApoC-IB'; Precursor;)
genome : 45,417,579 - 45,422,597 (5,019)
query : 2 - 613 (612/640)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.995
InterPro :
IPR006781 : Apolipoprotein C-I
GO :
0005576 : Cellular Component : extracellular region
0042157 : Biological Process : lipoprotein metabolic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015216)
Ortholog candidate ( ->
Evola
)
Rattus
sp. (Rat) : AY327505
Mus
sp. (Mouse) : BC035445
Pongo
sp. (Orangutan) : ENSPPYT00000011739
Macaca
sp. (Macaque) : XM_001104559
Pan
sp. (Chimpanzee) : XM_001148061
Monodelphis
sp. (Opossum) : XM_001375202
Canis
sp. (Dog) : XM_533643
HIX0015216
HIT000385101
(
AK225971
)
(Apolipoprotein C-I; Apo-CIB; ApoC-IB; Apolipoprotein C1; Contains: Truncated apolipoprotein C-I; Apo-CIB'; ApoC-IB'; Precursor;)
genome : 45,417,582 - 45,422,603 (5,022)
query : 1 - 553 (553/586)
4 exons
identity = 0.996
5'(1.000;0.987;1.000;0.994)3'
coverage = 0.944
InterPro :
IPR006781 : Apolipoprotein C-I
GO :
0005576 : Cellular Component : extracellular region
0042157 : Biological Process : lipoprotein metabolic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015216)
HIX0015216
HIT000700642 (
ENST00000588802
)
(Apolipoprotein C-I; Apo-CIB; ApoC-IB; Apolipoprotein C1; Contains: Truncated apolipoprotein C-I; Apo-CIB'; ApoC-IB'; Precursor;)
genome : 45,417,582 - 45,422,603 (5,022)
query : 1 - 553 (553/553)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015216)
HIX0015216
HIT000704353 (
ENST00000592535
)
(Apolipoprotein C-I; Apo-CIB; ApoC-IB; Apolipoprotein C1; Contains: Truncated apolipoprotein C-I; Apo-CIB'; ApoC-IB'; Precursor;)
genome : 45,417,812 - 45,422,466 (4,655)
query : 1 - 430 (430/430)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015216)
HIX0015216
HIT000198585 (
NM_001645
)
(Apolipoprotein C-I; Apo-CIB; ApoC-IB; Apolipoprotein C1; Contains: Truncated apolipoprotein C-I; Apo-CIB'; ApoC-IB'; Precursor;)
genome : 45,417,921 - 45,422,606 (4,686)
query : 1 - 461 (461/464)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 0.994
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015216)
HIX0015216
HIT000106310 (
ENST00000252491
)
(Apolipoprotein C-I; Apo-CIB; ApoC-IB; Apolipoprotein C1; Contains: Truncated apolipoprotein C-I; Apo-CIB'; ApoC-IB'; Precursor;)
genome : 45,417,921 - 45,422,606 (4,686)
query : 1 - 461 (461/461)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015216)
HIX0015216
HIT000430902
(
AK312036
)
(Apolipoprotein C-I; Apo-CIB; ApoC-IB; Apolipoprotein C1; Contains: Truncated apolipoprotein C-I; Apo-CIB'; ApoC-IB'; Precursor;)
genome : 45,417,935 - 45,422,487 (4,553)
query : 5 - 332 (328/332)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 0.988
InterPro :
IPR006781 : Apolipoprotein C-I
GO :
0005576 : Cellular Component : extracellular region
0042157 : Biological Process : lipoprotein metabolic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015216)
HIX0015216
HIT000704703 (
ENST00000592885
)
(Apolipoprotein C-I; Apo-CIB; ApoC-IB; Apolipoprotein C1; Contains: Truncated apolipoprotein C-I; Apo-CIB'; ApoC-IB'; Precursor;)
genome : 45,417,960 - 45,422,601 (4,642)
query : 1 - 562 (562/562)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015216)
HIX0015216
HIT000701619 (
ENST00000589781
)
(Conserved hypothetical protein.)
genome : 45,417,967 - 45,422,600 (4,634)
query : 1 - 273 (273/273)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015216)
HIX0015216
HIT000700918 (
ENST00000589078
)
(Apolipoprotein C-I; Apo-CIB; ApoC-IB; Apolipoprotein C1; Contains: Truncated apolipoprotein C-I; Apo-CIB'; ApoC-IB'; Precursor;)
genome : 45,418,097 - 45,419,549 (1,453)
query : 1 - 213 (213/213)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015216)
HIX0015216
HIT000703996 (
ENST00000592176
)
(Apolipoprotein C-I; Apo-CIB; ApoC-IB; Apolipoprotein C1; Contains: Truncated apolipoprotein C-I; Apo-CIB'; ApoC-IB'; Precursor;)
genome : 45,418,126 - 45,422,606 (4,481)
query : 1 - 514 (514/514)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, nucl 6, extr 4, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015216)
HIX0015216
HIT000698484 (
ENST00000586638
)
(Apolipoprotein C-I; Apo-CIB; ApoC-IB; Apolipoprotein C1; Contains: Truncated apolipoprotein C-I; Apo-CIB'; ApoC-IB'; Precursor;)
genome : 45,418,126 - 45,422,603 (4,478)
query : 1 - 425 (425/425)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015216)
HIX0015216
HIT000702167 (
ENST00000590334
)
(Apolipoprotein C-I; Apo-CIB; ApoC-IB; Apolipoprotein C1; Contains: Truncated apolipoprotein C-I; Apo-CIB'; ApoC-IB'; Precursor;)
genome : 45,418,126 - 45,422,599 (4,474)
query : 1 - 508 (508/508)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015216)
HIX0015216
HIT000034513
(
BC009698
)
(Apolipoprotein C-I; Apo-CIB; ApoC-IB; Apolipoprotein C1; Contains: Truncated apolipoprotein C-I; Apo-CIB'; ApoC-IB'; Precursor;)
genome : 45,418,127 - 45,422,600 (4,474)
query : 1 - 387 (387/402)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR006781 : Apolipoprotein C-I
GO :
0005576 : Cellular Component : extracellular region
0042157 : Biological Process : lipoprotein metabolic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015216)
HIX0015216
HIT000100062
(
BT007142
)
(Apolipoprotein C-I; Apo-CIB; ApoC-IB; Apolipoprotein C1; Contains: Truncated apolipoprotein C-I; Apo-CIB'; ApoC-IB'; Precursor;)
genome : 45,418,149 - 45,422,485 (4,337)
query : 1 - 250 (250/252)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 0.992
InterPro :
IPR006781 : Apolipoprotein C-I
GO :
0005576 : Cellular Component : extracellular region
0042157 : Biological Process : lipoprotein metabolic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015216)
HIX0015216
HIT000267757
(
CR456907
)
(Apolipoprotein C-I; Apo-CIB; ApoC-IB; Apolipoprotein C1; Contains: Truncated apolipoprotein C-I; Apo-CIB'; ApoC-IB'; Precursor;)
genome : 45,418,149 - 45,422,483 (4,335)
query : 1 - 248 (248/252)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 0.984
InterPro :
IPR006781 : Apolipoprotein C-I
GO :
0005576 : Cellular Component : extracellular region
0042157 : Biological Process : lipoprotein metabolic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015216)
HIX0015216
HIT000195134
(
M27359
)
(Apolipoprotein C-I; Apo-CIB; ApoC-IB; Apolipoprotein C1; Contains: Truncated apolipoprotein C-I; Apo-CIB'; ApoC-IB'; Precursor;)
genome : 45,419,434 - 45,422,493 (3,060)
query : 4 - 216 (213/216)
2 exons
identity = 0.986
5'(0.980;1.000)3'
coverage = 0.986
InterPro :
IPR006781 : Apolipoprotein C-I
GO :
0005576 : Cellular Component : extracellular region
0042157 : Biological Process : lipoprotein metabolic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 11, extr 9, nucl 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015216)
HIX0137948
HIT000657820 (
NR_028412
)
(Apolipoprotein C-I, acidic form; Apo-CIA; ApoC-IA; Apolipoprotein C1A; Contains: Truncated apolipoprotein C-I, acidic form; Apo-CIA'; ApoC-IA'; Precursor;)
genome : 45,430,060 - 45,434,643 (4,584)
query : 1 - 939 (939/939)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20.5, cyto_nucl 12, extr 9
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0137948)
HIX0137948
HIT000657821 (
NR_028413
)
(Apolipoprotein C-I, acidic form; Apo-CIA; ApoC-IA; Apolipoprotein C1A; Contains: Truncated apolipoprotein C-I, acidic form; Apo-CIA'; ApoC-IA'; Precursor;)
genome : 45,430,060 - 45,434,643 (4,584)
query : 1 - 754 (754/754)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20.5, cyto_nucl 12, extr 9
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0137948)
HIX0137948
HIT000657822 (
NR_028414
)
(Apolipoprotein C-I, acidic form; Apo-CIA; ApoC-IA; Apolipoprotein C1A; Contains: Truncated apolipoprotein C-I, acidic form; Apo-CIA'; ApoC-IA'; Precursor;)
genome : 45,430,060 - 45,434,643 (4,584)
query : 1 - 631 (631/631)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20.5, cyto_nucl 12, extr 9
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0137948)
HIX0137948
HIT000469070
(
EF553526
)
Representative transcript
(Apolipoprotein C-I, acidic form; Apo-CIA; ApoC-IA; Apolipoprotein C1A; Contains: Truncated apolipoprotein C-I, acidic form; Apo-CIA'; ApoC-IA'; Precursor;)
genome : 45,430,061 - 45,434,282 (4,222)
query : 2 - 393 (392/407)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 0.997
InterPro :
IPR006781 : Apolipoprotein C-I
GO :
0005576 : Cellular Component : extracellular region
0042157 : Biological Process : lipoprotein metabolic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 14, nucl 8.5, extr 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0137948)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : BC035445
Pongo
sp. (Orangutan) : ENSPPYT00000011739
Pan
sp. (Chimpanzee) : XM_001148136
Canis
sp. (Dog) : XM_533643
HIX0137948
HIT000607943 (
ENST00000507983
)
(Apolipoprotein C-I, acidic form; Apo-CIA; ApoC-IA; Apolipoprotein C1A; Contains: Truncated apolipoprotein C-I, acidic form; Apo-CIA'; ApoC-IA'; Precursor;)
genome : 45,430,061 - 45,434,643 (4,583)
query : 1 - 630 (630/630)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20.5, cyto_nucl 12, extr 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0137948)
HIX0137948
HIT000687385 (
ENST00000575148
)
(Apolipoprotein C-I, acidic form; Apo-CIA; ApoC-IA; Apolipoprotein C1A; Contains: Truncated apolipoprotein C-I, acidic form; Apo-CIA'; ApoC-IA'; Precursor;)
genome : 45,430,061 - 45,434,450 (4,390)
query : 1 - 560 (560/560)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20.5, cyto_nucl 12, extr 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0137948)
HIX0137948
HIT000700921 (
ENST00000589081
)
(Conserved hypothetical protein.)
genome : 45,430,210 - 45,434,447 (4,238)
query : 8 - 279 (272/279)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 0.975
SOSUI :
MEMBRANE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0137948)
HIX0137948
HIT000686884 (
ENST00000574565
)
(Apolipoprotein C-I, acidic form; Apo-CIA; ApoC-IA; Apolipoprotein C1A; Contains: Truncated apolipoprotein C-I, acidic form; Apo-CIA'; ApoC-IA'; Precursor;)
genome : 45,430,210 - 45,434,585 (4,376)
query : 1 - 731 (731/731)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20.5, cyto_nucl 12, extr 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0137948)
HIX0137948
HIT000684211 (
ENST00000571466
)
(Apolipoprotein C-I, acidic form; Apo-CIA; ApoC-IA; Apolipoprotein C1A; Contains: Truncated apolipoprotein C-I, acidic form; Apo-CIA'; ApoC-IA'; Precursor;)
genome : 45,430,233 - 45,434,315 (4,083)
query : 1 - 253 (253/253)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20.5, cyto_nucl 12, extr 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0137948)
HIX0225891
HIT000198586 (
NM_001646
)
(Apolipoprotein C-IV family protein.)
genome : 45,445,495 - 45,448,753 (3,259)
query : 1 - 615 (615/622)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 0.989
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 30
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225891)
HIX0225891
HIT000704772 (
ENST00000592954
)
(Apolipoprotein C-IV family protein.)
genome : 45,445,495 - 45,448,753 (3,259)
query : 1 - 615 (615/615)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225891)
HIX0225891
HIT000534805 (
ENST00000436871
)
(Apolipoprotein C-IV family protein.)
genome : 45,445,495 - 45,448,751 (3,257)
query : 1 - 613 (613/613)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225891)
HIX0225891
HIT000038918
(
BC020723
)
Representative transcript
(Apolipoprotein C-IV family protein.)
genome : 45,445,531 - 45,448,751 (3,221)
query : 1 - 577 (577/609)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 0.995
InterPro :
IPR028120 : Apolipoprotein C-IV
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225891)
HIX0225891
HIT000703422 (
ENST00000591600
)
(Apolipoprotein C-IV family protein.)
genome : 45,445,531 - 45,448,273 (2,743)
query : 1 - 348 (348/348)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225891)
HIX0225891
HIT000468768
(
EF371378
)
(Apolipoprotein C-IV family protein.)
genome : 45,445,535 - 45,448,562 (3,028)
query : 1 - 384 (384/384)
3 exons
identity = 0.995
5'(1.000;0.993;0.994)3'
coverage = 1.000
InterPro :
IPR028120 : Apolipoprotein C-IV
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225891)
HIX0202818
HIT000197518 (
NM_000483
)
(Apolipoprotein C-II family protein.)
genome : 45,449,239 - 45,452,821 (3,583)
query : 1 - 728 (728/738)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202818)
HIX0202818
HIT000106309 (
ENST00000252490
)
(Apolipoprotein C-II family protein.)
genome : 45,449,243 - 45,452,814 (3,572)
query : 1 - 717 (717/717)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202818)
HIX0202818
HIT000704076 (
ENST00000592257
)
(Apolipoprotein C-II family protein.)
genome : 45,449,292 - 45,452,652 (3,361)
query : 1 - 444 (444/444)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 13.5, extr 10, cyto 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202818)
HIX0202818
HIT000702193 (
ENST00000590360
)
(Apolipoprotein C-II family protein.)
genome : 45,450,460 - 45,452,822 (2,363)
query : 1 - 744 (744/744)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202818)
HIX0202818
HIT000261833
(
BC065270
)
(Apolipoprotein C-II; Apo-CII; ApoC-II; Apolipoprotein C2; Precursor;)
genome : 45,451,542 - 45,452,651 (1,110)
query : 1 - 946 (946/959)
2 exons
identity = 0.994
5'(0.996;0.993)3'
coverage = 1.000
InterPro :
IPR008019 : Apolipoprotein C-II
IPR023121 : ApoC-II domain
GO :
0006629 : Biological Process : lipid metabolic process
0006869 : Biological Process : lipid transport
0008047 : Molecular Function : enzyme activator activity
0042627 : Cellular Component : chylomicron
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 25, nucl 3, cyto 2, mito_nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202818)
HIX0202818
HIT000697640 (
ENST00000585786
)
(Apolipoprotein C-II family protein.)
genome : 45,451,543 - 45,452,589 (1,047)
query : 1 - 880 (880/880)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 25, nucl 3, cyto 2, mito_nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202818)
HIX0202818
HIT000703419 (
ENST00000591597
)
(Apolipoprotein C-II family protein.)
genome : 45,451,722 - 45,452,656 (935)
query : 20 - 447 (428/447)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 0.957
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202818)
HIX0202818
HIT000032398
(
BC005348
)
(Apolipoprotein C-II; Apo-CII; ApoC-II; Apolipoprotein C2; Precursor;)
genome : 45,451,723 - 45,452,821 (1,099)
query : 1 - 634 (634/663)
3 exons
identity = 0.997
5'(1.000;0.994;0.998)3'
coverage = 1.000
InterPro :
IPR008019 : Apolipoprotein C-II
IPR023121 : ApoC-II domain
GO :
0006629 : Biological Process : lipid metabolic process
0006869 : Biological Process : lipid transport
0008047 : Molecular Function : enzyme activator activity
0042627 : Cellular Component : chylomicron
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202818)
HIX0202818
HIT000320872
(
X00568
)
Representative transcript
(Apolipoprotein C-II; Apo-CII; ApoC-II; Apolipoprotein C2; Precursor;)
genome : 45,451,736 - 45,452,644 (909)
query : 1 - 444 (444/444)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR008019 : Apolipoprotein C-II
IPR023121 : ApoC-II domain
GO :
0006629 : Biological Process : lipid metabolic process
0006869 : Biological Process : lipid transport
0008047 : Molecular Function : enzyme activator activity
0042627 : Cellular Component : chylomicron
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202818)
HIX0202818
HIT000099628
(
BT006708
)
(Apolipoprotein C-II; Apo-CII; ApoC-II; Apolipoprotein C2; Precursor;)
genome : 45,451,736 - 45,452,505 (770)
query : 1 - 305 (305/306)
3 exons
identity = 0.997
5'(1.000;0.994;1.000)3'
coverage = 0.997
InterPro :
IPR008019 : Apolipoprotein C-II
IPR023121 : ApoC-II domain
GO :
0006629 : Biological Process : lipid metabolic process
0006869 : Biological Process : lipid transport
0008047 : Molecular Function : enzyme activator activity
0042627 : Cellular Component : chylomicron
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202818)
HIX0202818
HIT000195334
(
M29844
)
(Apolipoprotein C-II; Apo-CII; ApoC-II; Apolipoprotein C2; Precursor;)
genome : 45,451,766 - 45,452,650 (885)
query : 1 - 420 (420/420)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR008019 : Apolipoprotein C-II
IPR023121 : ApoC-II domain
GO :
0006629 : Biological Process : lipid metabolic process
0006869 : Biological Process : lipid transport
0008047 : Molecular Function : enzyme activator activity
0042627 : Cellular Component : chylomicron
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, extr 12, nucl 3, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202818)
HIX0202818
HIT000069821
(
AF113884
)
(Apolipoprotein C-II family protein.)
genome : 45,452,428 - 45,452,651 (224)
query : 1 - 224 (224/237)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
InterPro :
IPR008019 : Apolipoprotein C-II
IPR023121 : ApoC-II domain
GO :
0006629 : Biological Process : lipid metabolic process
0006869 : Biological Process : lipid transport
0008047 : Molecular Function : enzyme activator activity
0042627 : Cellular Component : chylomicron
SOSUI :
SOLUBLE PROTEIN
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202818)
HIX0226398
HIT000703468 (
ENST00000591646
)
(Conserved hypothetical protein.)
genome : 45,453,301 - 45,457,264 (3,964)
query : 1 - 361 (361/361)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13.5, nucl 12, extr 9, cyto 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0226398)
HIX0015219
HIT000726070 (
NR_040007
)
(Cleft lip and palate transmembrane protein 1.)
genome : 45,457,842 - 45,496,604 (38,763)
query : 1 - 2,504 (2,504/2,522)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015219)
HIX0015219
HIT000429692
(
AK310826
)
(Cleft lip and palate transmembrane protein 1.)
genome : 45,457,842 - 45,491,120 (33,279)
query : 1 - 1,522 (1,522/1,522)
8 exons
identity = 0.999
5'(1.000;1.000;0.992;1.000;1.000;1.000;1.000;
0.999)3'
coverage = 1.000
InterPro :
IPR008429 : Cleft lip and palate transmembrane 1
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19.5, cyto_nucl 15, cyto 7.5, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015219)
HIX0015219
HIT000700695 (
ENST00000588855
)
(Cleft lip and palate transmembrane protein 1.)
genome : 45,457,842 - 45,491,120 (33,279)
query : 1 - 1,522 (1,522/1,522)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19.5, cyto_nucl 15, cyto 7.5, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015219)
HIX0015219
HIT000499707
(
AK316094
)
(Cleft lip and palate transmembrane protein 1.)
genome : 45,457,848 - 45,496,223 (38,376)
query : 3 - 2,119 (2,117/2,119)
14 exons
identity = 0.998
5'(1.000;1.000;0.984;1.000;1.000;1.000;1.000;
0.992;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.999
InterPro :
IPR008429 : Cleft lip and palate transmembrane 1
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015219)
HIX0015219
HIT000640342 (
ENST00000541297
)
(Cleft lip and palate transmembrane protein 1.)
genome : 45,457,848 - 45,496,454 (38,607)
query : 1 - 2,732 (2,732/2,732)
14 exons
identity = 0.998
5'(0.996;0.965;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 28, E.R. 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015219)
HIX0015219
HIT000487938
(
AK293314
)
(Cleft lip and palate transmembrane protein 1.)
genome : 45,457,848 - 45,496,448 (38,601)
query : 1 - 2,340 (2,340/2,340)
14 exons
identity = 0.997
5'(0.982;1.000;0.992;1.000;1.000;1.000;1.000;
0.996;1.000;1.000;1.000;1.000;1.000;0.997)3'
coverage = 1.000
InterPro :
IPR008429 : Cleft lip and palate transmembrane 1
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015219)
HIX0015219
HIT000645124 (
ENST00000546079
)
(Cleft lip and palate transmembrane protein 1.)
genome : 45,457,848 - 45,496,448 (38,601)
query : 1 - 2,342 (2,342/2,342)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015219)
HIX0015219
HIT000726069 (
NR_040006
)
(Cleft lip and palate transmembrane protein 1.)
genome : 45,458,250 - 45,496,604 (38,355)
query : 1 - 2,480 (2,480/2,498)
14 exons
identity = 0.998
5'(0.979;0.965;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 28, E.R. 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015219)
HIX0015219
HIT000499104
(
AK304480
)
(Cleft lip and palate transmembrane protein 1.)
genome : 45,458,267 - 45,496,454 (38,188)
query : 1 - 2,313 (2,313/2,313)
14 exons
identity = 0.994
5'(0.975;0.965;0.984;1.000;0.992;1.000;1.000;
0.996;1.000;1.000;1.000;0.993;1.000;0.997)3'
coverage = 1.000
InterPro :
IPR008429 : Cleft lip and palate transmembrane 1
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 28, E.R. 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015219)
HIX0015219
HIT000130482 (
ENST00000337392
)
(Cleft lip and palate transmembrane protein 1;)
genome : 45,458,503 - 45,496,599 (38,097)
query : 1 - 2,604 (2,604/2,604)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015219)
HIX0015219
HIT000198289 (
NM_001294
)
(Cleft lip and palate transmembrane protein 1;)
genome : 45,458,599 - 45,496,604 (38,006)
query : 1 - 2,513 (2,513/2,531)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015219)
HIX0015219
HIT000032043
(
BC004865
)
(Cleft lip and palate transmembrane protein 1.)
genome : 45,458,602 - 45,496,593 (37,992)
query : 1 - 2,288 (2,288/2,308)
15 exons
identity = 0.999
5'(1.000;1.000;0.992;1.000;1.000;1.000;1.000;
0.996;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
InterPro :
IPR008429 : Cleft lip and palate transmembrane 1
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015219)
HIX0015219
HIT000081970
(
AK074935
)
(Cleft lip and palate transmembrane protein 1;)
genome : 45,458,637 - 45,496,598 (37,962)
query : 1 - 2,469 (2,469/2,469)
14 exons
identity = 0.998
5'(1.000;1.000;0.992;1.000;1.000;1.000;1.000;
0.996;1.000;1.000;1.000;0.993;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR008429 : Cleft lip and palate transmembrane 1
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015219)
HIX0015219
HIT000331333
(
AK223553
)
(Cleft lip and palate transmembrane protein 1;)
genome : 45,458,637 - 45,496,444 (37,808)
query : 1 - 2,315 (2,315/2,315)
14 exons
identity = 0.998
5'(1.000;1.000;0.992;1.000;1.000;1.000;1.000;
0.992;1.000;1.000;1.000;1.000;1.000;0.997)3'
coverage = 1.000
InterPro :
IPR008429 : Cleft lip and palate transmembrane 1
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015219)
HIX0015219
HIT000063367
(
AF037339
)
Representative transcript
(Cleft lip and palate transmembrane protein 1;)
genome : 45,458,638 - 45,496,599 (37,962)
query : 1 - 2,469 (2,469/2,486)
14 exons
identity = 0.999
5'(1.000;1.000;0.992;1.000;1.000;1.000;1.000;
0.996;1.000;1.000;1.000;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR008429 : Cleft lip and palate transmembrane 1
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015219)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : BC022172
Danio
sp. (Zebrafish) : BC154188
Bos
sp. (Cow) : ENSBTAT00000027395
Oryzias
sp. (Medaka) : ENSORLT00000008521
Pongo
sp. (Orangutan) : ENSPPYT00000011741
Takifugu
sp. (Fugu) : SINFRUT00000130907
Rattus
sp. (Rat) : XM_001067335
Monodelphis
sp. (Opossum) : XM_001375220
Equus
sp. (Horse) : XM_001916976
Pan
sp. (Chimpanzee) : XM_524299
Canis
sp. (Dog) : XM_541570
HIX0015219
HIT000082297
(
AK075262
)
(Cleft lip and palate transmembrane protein 1;)
genome : 45,458,638 - 45,496,598 (37,961)
query : 1 - 2,468 (2,468/2,468)
14 exons
identity = 0.998
5'(1.000;1.000;0.992;1.000;0.992;1.000;1.000;
0.996;1.000;1.000;1.000;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR008429 : Cleft lip and palate transmembrane 1
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 26, E.R. 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015219)
HIX0015219
HIT000703127 (
ENST00000591304
)
(Cleft lip and palate transmembrane protein 1.)
genome : 45,458,638 - 45,488,561 (29,924)
query : 1 - 528 (528/528)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto_mito 10, cyto 9.5, mito 9.5, plas 4, extr 2,
nucl 2, E.R. 2, lyso 2, cysk_plas 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015219)
HIX0015219
HIT000035779
(
BC012359
)
(Cleft lip and palate transmembrane protein 1;)
genome : 45,458,648 - 45,496,599 (37,952)
query : 1 - 2,459 (2,459/2,476)
14 exons
identity = 0.999
5'(1.000;1.000;0.992;1.000;1.000;1.000;1.000;
0.996;1.000;1.000;1.000;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR008429 : Cleft lip and palate transmembrane 1
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015219)
HIX0015219
HIT000100182
(
BT007262
)
(Cleft lip and palate transmembrane protein 1.)
genome : 45,458,653 - 45,496,415 (37,763)
query : 1 - 2,059 (2,059/2,061)
15 exons
identity = 0.999
5'(1.000;1.000;0.992;1.000;1.000;1.000;1.000;
0.996;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 0.999
InterPro :
IPR008429 : Cleft lip and palate transmembrane 1
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015219)
HIX0015219
HIT000697815 (
ENST00000585961
)
(Cleft lip and palate transmembrane protein 1.)
genome : 45,458,815 - 45,477,747 (18,933)
query : 1 - 572 (572/572)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 10, mito 7, pero 5, mito_nucl 5, plas 3, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015219)
HIX0015219
HIT000699380 (
ENST00000587537
)
(Cleft lip and palate transmembrane protein 1.)
genome : 45,477,804 - 45,490,194 (12,391)
query : 1 - 737 (737/737)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, nucl 7, extr 4, mito_nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015219)
HIX0015219
HIT000700998 (
ENST00000589158
)
(Cleft lip and palate transmembrane protein 1.)
genome : 45,487,544 - 45,490,648 (3,105)
query : 1 - 749 (749/749)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16, mito 10, cyto 5, E.R._mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015219)
HIX0015219
HIT000700114 (
ENST00000588274
)
(Cleft lip and palate transmembrane protein 1.)
genome : 45,490,162 - 45,493,843 (3,682)
query : 1 - 805 (805/805)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015219)
HIX0015219
HIT000701186 (
ENST00000589347
)
(Cleft lip and palate transmembrane protein 1.)
genome : 45,490,619 - 45,495,894 (5,276)
query : 1 - 638 (638/638)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 27, E.R. 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015219)
HIX0015219
HIT000698820 (
ENST00000586975
)
(Cleft lip and palate transmembrane protein 1.)
genome : 45,493,242 - 45,494,517 (1,276)
query : 1 - 720 (720/720)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 16, E.R._mito 6.5, extr 5, E.R. 4.5, mito 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015219)
HIX0015219
HIT000010970
(
AK027698
)
(Cleft lip and palate transmembrane protein 1.)
genome : 45,495,526 - 45,496,598 (1,073)
query : 1 - 921 (921/921)
2 exons
identity = 0.999
5'(1.000;0.999)3'
coverage = 1.000
InterPro :
IPR008429 : Cleft lip and palate transmembrane 1
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11.5, mito 11, cyto_nucl 8.83333,
cyto_pero 7.16667, extr 4, nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015219)
HIX0015219
HIT000698760 (
ENST00000586915
)
(Cleft lip and palate transmembrane protein 1.)
genome : 45,495,526 - 45,496,452 (927)
query : 1 - 775 (775/775)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11.5, mito 11, cyto_nucl 8.83333,
cyto_pero 7.16667, extr 4, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015219)
HIX0015220
HIT000103541 (
ENST00000221452
)
(Transcription factor RelB; I-Rel;)
genome : 45,504,688 - 45,541,452 (36,765)
query : 1 - 2,294 (2,294/2,294)
11 exons
identity = 0.996
5'(1.000;1.000;0.974;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 13, nucl 12.5, cyto_nucl 11, cyto 6.5,
E.R._mito 6.5, mito_pero 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015220)
HIX0015220
HIT000196521
(
M83221
)
(Transcription factor RelB; I-Rel;)
genome : 45,504,695 - 45,541,452 (36,758)
query : 7 - 2,293 (2,287/2,314)
11 exons
identity = 0.990
5'(0.976;1.000;0.969;1.000;1.000;1.000;1.000;
1.000;0.971;1.000;0.994)3'
coverage = 0.988
InterPro :
IPR000451 : NF-kappa-B/Dorsal
IPR002909 : IPT domain
IPR008967 : p53-like transcription factor, DNA-binding
IPR011539 : Rel homology domain
IPR014756 : Immunoglobulin E-set
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0005515 : Molecular Function : protein binding
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 13, nucl 12.5, cyto_nucl 11, cyto 6.5,
E.R._mito 6.5, mito_pero 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015220)
HIX0015220
HIT000203104 (
NM_006509
)
(Transcription factor RelB; I-Rel;)
genome : 45,504,707 - 45,541,456 (36,750)
query : 1 - 2,279 (2,279/2,297)
11 exons
identity = 0.996
5'(1.000;1.000;0.974;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 13, nucl 12.5, cyto_nucl 11, cyto 6.5,
E.R._mito 6.5, mito_pero 6.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015220)
HIX0015220
HIT000639165 (
ENST00000540120
)
(Transcription factor RelB; I-Rel;)
genome : 45,504,712 - 45,541,452 (36,741)
query : 1 - 2,270 (2,270/2,270)
11 exons
identity = 0.996
5'(1.000;1.000;0.974;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 13, nucl 12.5, cyto_nucl 11, cyto 6.5,
E.R._mito 6.5, mito_pero 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015220)
HIX0015220
HIT000605384 (
ENST00000505236
)
(Transcription factor RelB; I-Rel;)
genome : 45,504,719 - 45,541,417 (36,699)
query : 1 - 2,219 (2,219/2,219)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 13, nucl 12.5, cyto_nucl 11, cyto 6.5,
E.R._mito 6.5, mito_pero 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015220)
HIX0015220
HIT000609344 (
ENST00000509480
)
(Transcription factor RelB.)
genome : 45,504,719 - 45,515,487 (10,769)
query : 1 - 840 (840/840)
4 exons
identity = 0.992
5'(1.000;1.000;0.978;0.997)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12.5, cyto_nucl 12.5, cyto 9.5, extr 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015220)
HIX0015220
HIT000040404
(
BC028013
)
Representative transcript
(Transcription factor RelB; I-Rel;)
genome : 45,504,755 - 45,541,447 (36,693)
query : 1 - 2,222 (2,222/2,248)
11 exons
identity = 0.996
5'(1.000;1.000;0.974;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000451 : NF-kappa-B/Dorsal
IPR002909 : IPT domain
IPR008967 : p53-like transcription factor, DNA-binding
IPR011539 : Rel homology domain
IPR014756 : Immunoglobulin E-set
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0005515 : Molecular Function : protein binding
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 13, nucl 12.5, cyto_nucl 11, cyto 6.5,
E.R._mito 6.5, mito_pero 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015220)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : DQ020180
Oryzias
sp. (Medaka) : ENSORLT00000008527
Oryzias
sp. (Medaka) : ENSORLT00000013931
Pongo
sp. (Orangutan) : ENSPPYT00000011742
Macaca
sp. (Macaque) : XM_001104559
Danio
sp. (Zebrafish) : XM_001335557
Monodelphis
sp. (Opossum) : XM_001375220
Pan
sp. (Chimpanzee) : XM_512742
Canis
sp. (Dog) : XM_541569
Bos
sp. (Cow) : XM_600955
HIX0015220
HIT000423391
(
AK290594
)
(Transcription factor RelB; I-Rel;)
genome : 45,504,800 - 45,541,449 (36,650)
query : 1 - 2,179 (2,179/2,179)
11 exons
identity = 0.995
5'(1.000;1.000;0.974;1.000;1.000;1.000;1.000;
0.995;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000451 : NF-kappa-B/Dorsal
IPR002909 : IPT domain
IPR008967 : p53-like transcription factor, DNA-binding
IPR011539 : Rel homology domain
IPR014756 : Immunoglobulin E-set
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0005515 : Molecular Function : protein binding
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14, nucl 12.5, cyto_nucl 9.5, cyto 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015220)
HIX0015220
HIT000609998 (
ENST00000510184
)
(Transcription factor RelB homolog;)
genome : 45,525,088 - 45,528,936 (3,849)
query : 1 - 546 (546/546)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, cyto 8.5, cyto_nucl 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015220)
HIX0015220
HIT000609106 (
ENST00000509229
)
(Transcription factor RelB.)
genome : 45,535,682 - 45,540,826 (5,145)
query : 1 - 775 (775/775)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto 5, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015220)
HIX0015220
HIT000701809 (
ENST00000589972
)
(Transcription factor RelB.)
genome : 45,535,966 - 45,541,380 (5,415)
query : 1 - 760 (760/760)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13.5, cyto 13, nucl 10, extr 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015220)
HIX0015221
HIT000063703
(
AF042800
)
Representative transcript
(CLK4-associating serine/arginine rich protein; Splicing factor, arginine/serine-rich 16; Suppressor of white-apricot homolog 2;)
genome : 45,542,298 - 45,574,214 (31,917)
query : 1 - 2,234 (2,234/2,250)
21 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.993;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR019147 : Suppressor of white apricot N-terminal domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22.5, cyto_nucl 17.1667, cyto 6.5,
cyto_golg 5.66667
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015221)
HIX0015221
HIT000203596 (
NM_007056
)
(Suppressor of white apricot N-terminal domain containing protein.)
genome : 45,542,298 - 45,574,214 (31,917)
query : 1 - 2,234 (2,234/2,250)
21 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.993;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22.5, cyto_nucl 17.1667, cyto 6.5,
cyto_golg 5.66667
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015221)
HIX0015221
HIT000103542 (
ENST00000221455
)
(Suppressor of white apricot N-terminal domain containing protein.)
genome : 45,542,298 - 45,574,214 (31,917)
query : 1 - 2,234 (2,234/2,234)
21 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22.5, cyto_nucl 17.1667, cyto 6.5,
cyto_golg 5.66667
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015221)
HIX0015221
HIT000487957
(
AK293333
)
(CLK4-associating serine/arginine rich protein.)
genome : 45,542,304 - 45,574,113 (31,810)
query : 3 - 1,943 (1,941/1,943)
20 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;0.993;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.999
InterPro :
IPR019147 : Suppressor of white apricot N-terminal domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24.5, cyto_nucl 16.8333, cyto 4,
cyto_golg 3.66667
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015221)
HIX0015221
HIT000475448 (
ENST00000391953
)
(Suppressor of white apricot N-terminal domain containing protein.)
genome : 45,542,304 - 45,574,113 (31,810)
query : 1 - 1,941 (1,941/1,941)
20 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24.5, cyto_nucl 16.8333, cyto 4,
cyto_golg 3.66667
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015221)
HIX0015221
HIT000703233 (
ENST00000591410
)
(Conserved hypothetical protein.)
genome : 45,542,308 - 45,563,700 (21,393)
query : 1 - 572 (572/572)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24, cyto_nucl 13.5, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015221)
HIX0015221
HIT000703877 (
ENST00000592056
)
(Suppressor of white apricot N-terminal domain containing protein.)
genome : 45,542,308 - 45,556,345 (14,038)
query : 1 - 582 (582/582)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015221)
HIX0015221
HIT000252988
(
AY358944
)
(CLK4-associating serine/arginine rich protein.)
genome : 45,542,323 - 45,574,214 (31,892)
query : 6 - 2,219 (2,214/2,276)
21 exons
identity = 0.999
5'(0.956;1.000;1.000;1.000;1.000;1.000;0.993;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.998
InterPro :
IPR019147 : Suppressor of white apricot N-terminal domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22.5, cyto_nucl 17.3333, cyto 7,
cyto_golg 5.16667
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015221)
HIX0015221
HIT000475447 (
ENST00000391952
)
(Suppressor of white apricot N-terminal domain containing protein.)
genome : 45,542,323 - 45,574,214 (31,892)
query : 1 - 2,213 (2,213/2,213)
21 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23.5, cyto_nucl 17.3333, cyto 6,
cyto_golg 4.66667
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015221)
HIX0015221
HIT000700776 (
ENST00000588936
)
(Suppressor of white apricot N-terminal domain containing protein.)
genome : 45,542,332 - 45,556,111 (13,780)
query : 1 - 590 (590/590)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015221)
HIX0015221
HIT000700087 (
ENST00000588247
)
(Conserved hypothetical protein.)
genome : 45,542,332 - 45,544,005 (1,674)
query : 1 - 599 (599/599)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, extr 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015221)
HIX0015221
HIT000019536
(
AK094681
)
(CLK4-associating serine/arginine rich protein.)
genome : 45,542,779 - 45,574,212 (31,434)
query : 1 - 2,769 (2,769/2,769)
19 exons
identity = 0.999
5'(0.997;1.000;1.000;1.000;1.000;0.993;1.000;
1.000;1.000;1.000;1.000;1.000;0.996;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR019147 : Suppressor of white apricot N-terminal domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22.5, cyto_nucl 17.1667, cyto 6.5,
cyto_golg 5.66667
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015221)
HIX0015221
HIT000643989 (
ENST00000544944
)
(Suppressor of white apricot N-terminal domain containing protein.)
genome : 45,542,779 - 45,574,212 (31,434)
query : 1 - 2,769 (2,769/2,769)
19 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22.5, cyto_nucl 17.1667, cyto 6.5,
cyto_golg 5.66667
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015221)
HIX0015221
HIT000036166
(
BC013178
)
(CLK4-associating serine/arginine rich protein.)
genome : 45,543,441 - 45,574,209 (30,769)
query : 14 - 1,515 (1,502/1,530)
15 exons
identity = 0.997
5'(1.000;1.000;1.000;1.000;1.000;0.918;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 0.991
InterPro :
IPR019147 : Suppressor of white apricot N-terminal domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto 9, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015221)
HIX0015221
HIT000265823
(
BC080554
)
(CLK4-associating serine/arginine rich protein; Splicing factor, arginine/serine-rich 16; Suppressor of white-apricot homolog 2;)
genome : 45,543,441 - 45,574,209 (30,769)
query : 9 - 2,169 (2,161/2,197)
20 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;0.993;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.993)3'
coverage = 0.996
InterPro :
IPR019147 : Suppressor of white apricot N-terminal domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22.5, cyto_nucl 17.1667, cyto 6.5,
cyto_golg 5.66667
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015221)
HIX0015221
HIT000390459
(
BC131496
)
(Suppressor of white apricot N-terminal domain containing protein.)
genome : 45,543,528 - 45,567,304 (23,777)
query : 14 - 880 (867/898)
11 exons
identity = 0.997
5'(0.952;1.000;1.000;1.000;1.000;0.992;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 0.965
InterPro :
IPR019147 : Suppressor of white apricot N-terminal domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, cyto_nucl 13.5, nucl 12.5, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015221)
HIX0015221
HIT000698957 (
ENST00000587112
)
(Suppressor of white apricot N-terminal domain containing protein.)
genome : 45,543,528 - 45,567,304 (23,777)
query : 1 - 867 (867/867)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13, nucl 12.5, cyto 10.5, mito_nucl 10.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015221)
HIX0015221
HIT000699857 (
ENST00000588016
)
(Suppressor of white apricot N-terminal domain containing protein.)
genome : 45,556,058 - 45,561,511 (5,454)
query : 1 - 967 (967/967)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13.5, nucl 13, cyto 10, extr 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015221)
HIX0015221
HIT000081625
(
AK074590
)
(Conserved hypothetical protein.)
genome : 45,567,105 - 45,568,821 (1,717)
query : 1 - 1,721 (1,721/1,721)
1 exon
identity = 0.996
5'(0.996)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 11, plas 10, extr 5, cysk_plas 5, cyto_plas 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015221)
HIX0015221
HIT000024310
(
AL080189
)
(Conserved hypothetical protein.)
genome : 45,567,411 - 45,574,214 (6,804)
query : 1 - 697 (697/712)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015221)
HIX0015221
HIT000697289 (
ENST00000585432
)
(Conserved hypothetical protein.)
genome : 45,570,729 - 45,571,438 (710)
query : 1 - 290 (290/290)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015221)
HIX0015221
HIT000697470 (
ENST00000585615
)
(Conserved hypothetical protein.)
genome : 45,571,460 - 45,574,200 (2,741)
query : 1 - 633 (633/633)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27.5, cyto_nucl 15
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015221)
HIX0015221
HIT000703726 (
ENST00000591904
)
(Conserved hypothetical protein.)
genome : 45,571,678 - 45,574,213 (2,536)
query : 1 - 506 (506/506)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, cyto 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015221)
HIX0015221
HIT000699315 (
ENST00000587472
)
(Conserved hypothetical protein.)
genome : 45,572,341 - 45,574,131 (1,791)
query : 1 - 345 (345/345)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015221)
HIX0015221
HIT000704694 (
ENST00000592876
)
(Conserved hypothetical protein.)
genome : 45,572,904 - 45,574,086 (1,183)
query : 1 - 751 (751/751)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, mito 4, cyto 1.5, cyto_nucl 1.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015221)
HIX0015221
HIT000699911 (
ENST00000588070
)
(Conserved hypothetical protein.)
genome : 45,573,097 - 45,574,214 (1,118)
query : 1 - 445 (445/445)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, mito 4, cyto 1.5, cyto_nucl 1.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015221)
HIX0015222
HIT000038657
(
BC019352
)
(Zinc finger protein 296.)
genome : 45,574,758 - 45,579,688 (4,931)
query : 1 - 1,586 (1,586/1,604)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015222)
HIX0015222
HIT000213193 (
NM_145288
)
(Zinc finger protein 296.)
genome : 45,574,758 - 45,579,688 (4,931)
query : 1 - 1,586 (1,586/1,604)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015222)
HIX0015222
HIT000079787
(
AF447583
)
Representative transcript
(Zinc finger protein 296.)
genome : 45,574,758 - 45,579,845 (5,088)
query : 1 - 1,632 (1,632/1,648)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015222)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK008748
Equus
sp. (Horse) : ENSECAT00000012012
Oryzias
sp. (Medaka) : ENSORLT00000013144
Oryzias
sp. (Medaka) : ENSORLT00000016508
Pongo
sp. (Orangutan) : ENSPPYT00000011744
Takifugu
sp. (Fugu) : SINFRUT00000136392
Rattus
sp. (Rat) : XM_001075949
Macaca
sp. (Macaque) : XM_001110175
Monodelphis
sp. (Opossum) : XM_001375301
Canis
sp. (Dog) : XM_541568
Bos
sp. (Cow) : XM_587746
Pan
sp. (Chimpanzee) : XR_024821
HIX0015222
HIT000083626
(
AY040679
)
(Zinc finger protein 296.)
genome : 45,574,758 - 45,579,071 (4,314)
query : 1 - 1,182 (1,182/1,198)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015222)
HIX0015222
HIT000116548 (
ENST00000303809
)
(Zinc finger protein 296.)
genome : 45,574,758 - 45,579,846 (5,089)
query : 1 - 1,744 (1,744/1,744)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015222)
HIX0015222
HIT000698590 (
ENST00000586744
)
(Gem-associated protein 7; Gemin-7; SIP3;)
genome : 45,579,768 - 45,593,649 (13,882)
query : 1 - 690 (690/690)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015222)
HIX0015224
HIT000703429 (
ENST00000591607
)
(Gem-associated protein 7; Gemin-7; SIP3;)
genome : 45,582,453 - 45,594,127 (11,675)
query : 1 - 848 (848/848)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, cyto_nucl 13, mito 8, nucl 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015224)
HIX0015224
HIT000703569 (
ENST00000591747
)
(Gem-associated protein 7; Gemin-7; SIP3;)
genome : 45,582,516 - 45,593,795 (11,280)
query : 1 - 576 (576/576)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, cyto_nucl 13, mito 8, nucl 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015224)
HIX0015224
HIT000110550 (
ENST00000270257
)
(Gem-associated protein 7; Gemin-7; SIP3;)
genome : 45,582,520 - 45,594,782 (12,263)
query : 1 - 1,657 (1,657/1,657)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, cyto_nucl 13, mito 8, nucl 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015224)
HIX0015224
HIT000704170 (
ENST00000592351
)
(Non-protein coding transcript.)
genome : 45,582,521 - 45,591,957 (9,437)
query : 1 - 429 (429/429)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015224)
HIX0015224
HIT000475446 (
ENST00000391951
)
(Gem-associated protein 7; Gemin-7; SIP3;)
genome : 45,582,527 - 45,593,971 (11,445)
query : 1 - 716 (716/716)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, cyto_nucl 13, mito 8, nucl 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015224)
HIX0015224
HIT000209407 (
NM_024707
)
(Gem-associated protein 7; Gemin-7; SIP3;)
genome : 45,582,530 - 45,594,782 (12,253)
query : 1 - 1,647 (1,647/1,647)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, cyto_nucl 13, mito 8, nucl 7
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015224)
HIX0015224
HIT000316426 (
NM_001007269
)
(Gem-associated protein 7; Gemin-7; SIP3;)
genome : 45,582,530 - 45,594,782 (12,253)
query : 1 - 1,524 (1,524/1,524)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, cyto_nucl 13, mito 8, nucl 7
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015224)
HIX0015224
HIT000007292
(
AK024018
)
Representative transcript
(Gem-associated protein 7; Gemin-7; SIP3;)
genome : 45,582,547 - 45,594,782 (12,236)
query : 2 - 1,631 (1,630/1,631)
3 exons
identity = 0.996
5'(1.000;0.992;0.996)3'
coverage = 0.999
InterPro :
IPR020338 : SMN complex, gem-associated protein 7
GO :
0032797 : Cellular Component : SMN complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, cyto_nucl 13, mito 8, nucl 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015224)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK010303
Bos
sp. (Cow) : BC118472
Oryzias
sp. (Medaka) : ENSORLT00000008574
Pongo
sp. (Orangutan) : ENSPPYT00000011745
Takifugu
sp. (Fugu) : SINFRUT00000130889
Rattus
sp. (Rat) : XM_001075920
Pan
sp. (Chimpanzee) : XM_001163399
Monodelphis
sp. (Opossum) : XM_001375319
Equus
sp. (Horse) : XM_001502450
Canis
sp. (Dog) : XM_850062
Macaca
sp. (Macaque) : XR_013080
HIX0015224
HIT000033450
(
BC007793
)
(Gem-associated protein 7; Gemin-7; SIP3;)
genome : 45,582,558 - 45,594,173 (11,616)
query : 1 - 1,010 (1,010/1,031)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR020338 : SMN complex, gem-associated protein 7
GO :
0032797 : Cellular Component : SMN complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, cyto_nucl 13, mito 8, nucl 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015224)
HIX0015224
HIT000316427 (
NM_001007270
)
(Gem-associated protein 7; Gemin-7; SIP3;)
genome : 45,583,164 - 45,594,782 (11,619)
query : 20 - 1,561 (1,542/1,561)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 0.988
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, cyto_nucl 13, mito 8, nucl 7
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015224)
HIX0015222
HIT000698402 (
ENST00000586556
)
(Gem-associated protein 7; Gemin-7; SIP3;)
genome : 45,588,587 - 45,593,632 (5,046)
query : 1 - 618 (618/618)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015222)
HIX0015224
HIT000084465
(
AY114106
)
(Gem-associated protein 7; Gemin-7; SIP3;)
genome : 45,593,373 - 45,593,768 (396)
query : 1 - 396 (396/396)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
InterPro :
IPR020338 : SMN complex, gem-associated protein 7
GO :
0032797 : Cellular Component : SMN complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, cyto_nucl 13, mito 8, nucl 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015224)
HIX0015224
HIT000268171
(
CR457321
)
(Gem-associated protein 7; Gemin-7; SIP3;)
genome : 45,593,373 - 45,593,768 (396)
query : 1 - 396 (396/396)
1 exon
identity = 0.997
5'(0.997)3'
coverage = 1.000
InterPro :
IPR020338 : SMN complex, gem-associated protein 7
GO :
0032797 : Cellular Component : SMN complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, cyto_nucl 13, mito 8, nucl 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015224)
HIX0015224
HIT000705058 (
ENST00000593240
)
(Non-protein coding transcript.)
genome : 45,594,654 - 45,596,414 (1,761)
query : 1 - 176 (176/176)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015224)
HIX0015224
eHIT000009360 ( ESTsASS_19_793 )
(Non-protein coding transcript.)
genome : 45,595,050 - 45,649,075 (54,026)
query : 1 - 2,369 (2,369/2,369)
12 exons
ESTs assembly
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015224)
ESTs used for assembly :
AI572619,CX871355,CA843266,BE274848
W38399,BF834597,N79827,BU101875
DA861206,BG420323,CB128953,DA953944
HIX0015224
HIT000641854 (
ENST00000542809
)
(Hypothetical short protein.)
genome : 45,595,050 - 45,596,529 (1,480)
query : 1 - 554 (554/554)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 21, mito 5, plas 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015224)
HIX0015224
HIT000051480
(
BC035704
)
(Protein phosphatase 1 regulatory subunit 37.)
genome : 45,596,220 - 45,644,674 (48,455)
query : 12 - 917 (906/917)
5 exons
identity = 0.999
5'(0.998;1.000;1.000;1.000;1.000)3'
coverage = 0.988
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, extr 6, nucl 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015224)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK160935
Danio
sp. (Zebrafish) : BC141792
Bos
sp. (Cow) : BC153224
Equus
sp. (Horse) : ENSECAT00000013454
Oryzias
sp. (Medaka) : ENSORLT00000008564
Pongo
sp. (Orangutan) : ENSPPYT00000011746
Tetraodon
sp. (Tetraodon) : GSTENT00014807001
Takifugu
sp. (Fugu) : SINFRUT00000130898
Monodelphis
sp. (Opossum) : XM_001375340
Rattus
sp. (Rat) : XM_218397
Canis
sp. (Dog) : XM_541567
Macaca
sp. (Macaque) : XR_013782
Pan
sp. (Chimpanzee) : XR_023882
HIX0015224
HIT000519839 (
ENST00000421905
)
(Protein phosphatase 1 regulatory subunit 37; Leucine-rich repeat-containing protein 68;)
genome : 45,596,218 - 45,649,730 (53,513)
query : 1 - 2,430 (2,430/2,430)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 16, cyto 12.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015224)
HIX0015224
HIT000103545 (
ENST00000221462
)
(Protein phosphatase 1 regulatory subunit 37; Leucine-rich repeat-containing protein 68;)
genome : 45,596,220 - 45,650,543 (54,324)
query : 1 - 3,163 (3,163/3,163)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16.5, nucl 16, cyto 13
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015224)
HIX0015224
HIT000725525 (
NM_019121
)
(Protein phosphatase 1 regulatory subunit 37; Leucine-rich repeat-containing protein 68;)
genome : 45,596,431 - 45,650,543 (54,113)
query : 1 - 2,952 (2,952/2,952)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16.5, nucl 16, cyto 13
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015224)
HIX0015224
HIT000643114 (
ENST00000544069
)
(Protein phosphatase 1 regulatory subunit 37.)
genome : 45,596,432 - 45,645,455 (49,024)
query : 1 - 712 (712/712)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20.5, cyto_nucl 16.5, nucl 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015224)
HIX0015224
HIT000599462 (
ENST00000496125
)
(Protein phosphatase 1 regulatory subunit 37.)
genome : 45,596,463 - 45,612,176 (15,714)
query : 1 - 555 (555/555)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 18, cyto 14, nucl 12, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015224)
HIX0015224
HIT000643942 (
ENST00000544897
)
(Protein phosphatase 1 regulatory subunit 37.)
genome : 45,603,322 - 45,644,644 (41,323)
query : 1 - 527 (527/527)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29, cyto 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015224)
HIX0226333
HIT000701299 (
ENST00000589460
)
(Translation elongation factor IF5A family protein.)
genome : 45,631,827 - 45,632,288 (462)
query : 1 - 462 (462/462)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, extr 12, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0226333)
HIX0202954
HIT000046654
(
AK126781
)
Representative transcript
(Conserved hypothetical protein.)
genome : 45,632,292 - 45,641,091 (8,800)
query : 1 - 4,450 (4,450/4,450)
3 exons
identity = 0.996
5'(0.983;0.997;0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, mito 10, cyto_nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202954)
HIX0226397
HIT000703254 (
ENST00000591432
)
(Conserved hypothetical protein.)
genome : 45,639,251 - 45,640,235 (985)
query : 1 - 472 (472/472)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, mito 13.5, mito_pero 7.5, cyto_nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0226397)
HIX0015224
HIT000644955 (
ENST00000545910
)
(Protein phosphatase 1 regulatory subunit 37.)
genome : 45,641,834 - 45,644,644 (2,811)
query : 1 - 303 (303/303)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, cyto 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015224)
HIX0015224
HIT000001701
(
AB075866
)
(Protein phosphatase 1 regulatory subunit 37.)
genome : 45,644,676 - 45,651,322 (6,647)
query : 1 - 5,934 (5,934/5,949)
3 exons
identity = 0.999
5'(1.000;1.000;0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18.5, cyto_mito 11.3333, nucl 10.5,
cyto_nucl 7.33333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015224)
HIX0015224
HIT000520304 (
ENST00000422370
)
(Protein phosphatase 1 regulatory subunit 37.)
genome : 45,644,676 - 45,651,322 (6,647)
query : 1 - 5,930 (5,930/5,943)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18.5, cyto_mito 11.3333, nucl 10.5,
cyto_nucl 7.33333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015224)
HIX0015224
HIT000052126
(
BC039061
)
(Conserved hypothetical protein.)
genome : 45,648,390 - 45,650,538 (2,149)
query : 1 - 1,719 (1,719/1,746)
3 exons
identity = 0.999
5'(1.000;1.000;0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, nucl 11.5, cyto_nucl 9.33333, cyto 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015224)
HIX0015224
HIT000639104 (
ENST00000540059
)
(Conserved hypothetical protein.)
genome : 45,648,390 - 45,650,538 (2,149)
query : 1 - 1,719 (1,719/1,719)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, nucl 11.5, cyto_nucl 9.33333, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015224)
HIX0015225
HIT000121495 (
ENST00000317951
)
(NTPase KAP family P-loop domain-containing protein 1.)
genome : 45,653,008 - 45,663,408 (10,401)
query : 1 - 4,687 (4,687/4,687)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015225)
HIX0015225
HIT000319359 (
NM_198478
)
(NTPase KAP family P-loop domain-containing protein 1.)
genome : 45,653,008 - 45,663,408 (10,401)
query : 1 - 4,687 (4,687/4,687)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015225)
HIX0015225
HIT000701432 (
ENST00000589594
)
(Conserved hypothetical protein.)
genome : 45,653,008 - 45,653,863 (856)
query : 1 - 856 (856/856)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 11.5, cyto_mito 9.33333, cyto_nucl 7.83333,
extr 7, nucl 6, cyto 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015225)
HIX0015225
HIT000536870 (
ENST00000438936
)
(NTPase KAP family P-loop domain-containing protein 1.)
genome : 45,655,161 - 45,661,995 (6,835)
query : 1 - 2,080 (2,080/2,080)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015225)
HIX0015225
HIT000387518
(
BC117228
)
Representative transcript
(NTPase KAP family P-loop domain-containing protein 1.)
genome : 45,655,161 - 45,657,110 (1,950)
query : 1 - 1,950 (1,950/1,950)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
InterPro :
IPR011646 : KAP P-loop
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 25, E.R. 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015225)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : BC118925
Macaca
sp. (Macaque) : ENSMMUT00000032278
Monodelphis
sp. (Opossum) : ENSMODT00000026541
Oryzias
sp. (Medaka) : ENSORLT00000005716
Pongo
sp. (Orangutan) : ENSPPYT00000011747
Tetraodon
sp. (Tetraodon) : GSTENT00017948001
Takifugu
sp. (Fugu) : SINFRUT00000162969
Rattus
sp. (Rat) : XM_001057808
Bos
sp. (Cow) : XM_001255447
Canis
sp. (Dog) : XM_541566
Danio
sp. (Zebrafish) : XM_685343
Pan
sp. (Chimpanzee) : XR_020962
HIX0015225
HIT000502234
(
BC143792
)
(NTPase KAP family P-loop domain-containing protein 1.)
genome : 45,655,161 - 45,657,110 (1,950)
query : 1 - 1,950 (1,950/1,950)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
InterPro :
IPR011646 : KAP P-loop
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 25, E.R. 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015225)
HIX0015225
HIT000701614 (
ENST00000589776
)
(NTPase KAP family P-loop domain-containing protein 1.)
genome : 45,655,161 - 45,657,110 (1,950)
query : 1 - 1,950 (1,950/1,950)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 25, E.R. 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015225)
HIX0015225
HIT000527272 (
ENST00000429338
)
(NTPase KAP family P-loop domain-containing protein 1.)
genome : 45,655,196 - 45,657,028 (1,833)
query : 1 - 1,596 (1,596/1,596)
2 exons
identity = 0.996
3'(1.000;0.995)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 25, E.R. 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015225)
HIX0202809
HIT000031955
(
BC004450
)
(Trafficking protein particle complex subunit 6A; TRAPP complex subunit 6A;)
genome : 45,666,192 - 45,681,486 (15,295)
query : 1 - 790 (790/825)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR007194 : Transport protein particle (TRAPP) component
IPR024096 : NO signalling/Golgi transport ligand-binding domain
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 15, cyto_nucl 14, nucl 11, extr 3, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202809)
HIX0202809
HIT000209134 (
NM_024108
)
(Trafficking protein particle complex subunit 6A; TRAPP complex subunit 6A;)
genome : 45,666,186 - 45,681,501 (15,316)
query : 1 - 811 (811/838)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 15, cyto_nucl 14, nucl 11, extr 3, mito 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202809)
HIX0202809
HIT000724833 (
NM_001270891
)
(Trafficking protein particle complex subunit 6A; TRAPP complex subunit 6A;)
genome : 45,666,186 - 45,681,501 (15,316)
query : 1 - 769 (769/796)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 14, cyto_nucl 13.5, nucl 11, extr 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202809)
HIX0202809
HIT000724834 (
NM_001270892
)
(Trafficking protein particle complex subunit 6A isoform 3.)
genome : 45,666,186 - 45,681,501 (15,316)
query : 1 - 743 (743/770)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, cyto_nucl 12, nucl 10.5, extr 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202809)
HIX0202809
HIT000724835 (
NM_001270893
)
(Trafficking protein particle complex subunit 6A isoform 4.)
genome : 45,666,186 - 45,681,501 (15,316)
query : 1 - 701 (701/728)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11.5, cyto_nucl 11.5, nucl 10.5, extr 5, mito 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202809)
HIX0202809
HIT000030737
(
BC001907
)
Representative transcript
(Trafficking protein particle complex subunit 6A; TRAPP complex subunit 6A;)
genome : 45,666,186 - 45,681,485 (15,300)
query : 1 - 795 (795/822)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR007194 : Transport protein particle (TRAPP) component
IPR024096 : NO signalling/Golgi transport ligand-binding domain
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 15, cyto_nucl 14, nucl 11, extr 3, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202809)
HIX0202809
HIT000072137
(
AF161407
)
(Trafficking protein particle complex subunit 6A; TRAPP complex subunit 6A;)
genome : 45,666,192 - 45,681,495 (15,304)
query : 1 - 757 (757/782)
6 exons
identity = 0.995
3'(1.000;0.989;0.976;1.000;1.000;0.990)5'
coverage = 1.000
InterPro :
IPR007194 : Transport protein particle (TRAPP) component
IPR024096 : NO signalling/Golgi transport ligand-binding domain
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 14, cyto_nucl 13.5, nucl 11, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202809)
HIX0202809
HIT000102155 (
ENST00000006275
)
(Trafficking protein particle complex subunit 6A; TRAPP complex subunit 6A;)
genome : 45,666,186 - 45,681,495 (15,310)
query : 1 - 805 (805/805)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 15, cyto_nucl 14, nucl 11, extr 3, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202809)
HIX0202809
HIT000699903 (
ENST00000588062
)
(Trafficking protein particle complex subunit 6A isoform 4.)
genome : 45,666,186 - 45,681,495 (15,310)
query : 1 - 695 (695/695)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11.5, cyto_nucl 11.5, nucl 10.5, extr 5, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202809)
HIX0202809
HIT000697788 (
ENST00000585934
)
(Trafficking protein particle complex subunit 6A; TRAPP complex subunit 6A;)
genome : 45,666,191 - 45,681,495 (15,305)
query : 1 - 758 (758/758)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 14, cyto_nucl 13.5, nucl 11, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202809)
HIX0202809
HIT000704465 (
ENST00000592647
)
(Trafficking protein particle complex subunit 6A isoform 3.)
genome : 45,666,399 - 45,681,485 (15,087)
query : 1 - 514 (514/514)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, cyto_nucl 12, nucl 10.5, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202809)
HIX0202809
HIT000558570
(
FJ418644
)
(Trafficking protein particle complex subunit 6A; TRAPP complex subunit 6A;)
genome : 45,666,450 - 45,681,476 (15,027)
query : 8 - 487 (480/495)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.970
InterPro :
IPR007194 : Transport protein particle (TRAPP) component
IPR024096 : NO signalling/Golgi transport ligand-binding domain
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 14, cyto_nucl 13.5, nucl 11, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202809)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : BC037154
Danio
sp. (Zebrafish) : BC068383
Bos
sp. (Cow) : BC102525
Equus
sp. (Horse) : ENSECAT00000020225
Macaca
sp. (Macaque) : ENSMMUT00000032279
Monodelphis
sp. (Opossum) : ENSMODT00000026540
Pongo
sp. (Orangutan) : ENSPPYT00000011748
Tetraodon
sp. (Tetraodon) : GSTENT00008483001
Tetraodon
sp. (Tetraodon) : GSTENT00009180001
Takifugu
sp. (Fugu) : SINFRUT00000155862
Rattus
sp. (Rat) : XM_001057975
Canis
sp. (Dog) : XM_850056
Pan
sp. (Chimpanzee) : XR_020962
HIX0202809
HIT000699660 (
ENST00000587818
)
(Trafficking protein particle complex subunit 6A; TRAPP complex subunit 6A;)
genome : 45,667,983 - 45,681,469 (13,487)
query : 1 - 433 (433/433)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, nucl 10, cyto_mito 10
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0202809)
HIX0225901
HIT000255186
(
AY531266
)
Representative transcript
(Conserved hypothetical protein.)
genome : 45,682,555 - 45,683,163 (609)
query : 1 - 609 (609/609)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, mito 12
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225901)
HIX0225901
HIT000704901 (
ENST00000593083
)
(Conserved hypothetical protein.)
genome : 45,683,080 - 45,705,702 (22,623)
query : 1 - 550 (550/550)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13, extr 10, mito 4, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225901)
HIX0225901
HIT000700202 (
ENST00000588362
)
(Conserved hypothetical protein.)
genome : 45,683,172 - 45,684,827 (1,656)
query : 1 - 473 (473/473)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto_nucl 9.5, nucl 9, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225901)
HIX0225901
HIT000049457
(
AK130186
)
(Conserved hypothetical protein.)
genome : 45,683,180 - 45,685,056 (1,877)
query : 1 - 1,877 (1,877/1,877)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, nucl 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225901)
HIX0040033
HIT000096341
(
BC040703
)
Representative transcript
(Conserved hypothetical protein.)
genome : 45,683,517 - 45,685,058 (1,542)
query : 12 - 1,553 (1,542/1,609)
1 exon
identity = 0.998
3'(0.998)5'
coverage = 0.993
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, mito 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0040033)
HIX0040033
HIT000049422
(
AK130151
)
(Conserved hypothetical protein.)
genome : 45,683,618 - 45,685,057 (1,440)
query : 1 - 1,440 (1,440/1,440)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, mito 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0040033)
HIX0225901
HIT000703391 (
ENST00000591569
)
(Conserved hypothetical protein.)
genome : 45,690,646 - 45,720,191 (29,546)
query : 1 - 540 (540/540)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225901)
HIX0022974
HIT000018333
(
AK093466
)
(Exocyst complex component 3-like protein 2.)
genome : 45,715,879 - 45,735,138 (19,260)
query : 14 - 1,719 (1,706/1,719)
9 exons
identity = 0.996
3'(0.993;1.000;0.994;0.992;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 0.992
InterPro :
IPR010326 : Exocyst complex component Sec6
GO :
0000145 : Cellular Component : exocyst
0006887 : Biological Process : exocytosis
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 18.5, nucl 17, cyto 14
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022974)
HIX0022974
HIT000212446 (
NM_138568
)
(Exocyst complex component 3-like protein 2.)
genome : 45,715,879 - 45,735,138 (19,260)
query : 14 - 1,719 (1,706/1,719)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 0.992
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 18, nucl 16.5, cyto 14.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022974)
HIX0022974
HIT000511922 (
ENST00000413988
)
(Exocyst complex component 3-like protein 2.)
genome : 45,715,879 - 45,735,138 (19,260)
query : 14 - 1,719 (1,706/1,719)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 0.992
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 18, nucl 16.5, cyto 14.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022974)
HIX0022974
HIT000106303 (
ENST00000252482
)
(Exocyst complex component 3-like protein 2.)
genome : 45,715,879 - 45,735,138 (19,260)
query : 1 - 1,706 (1,706/1,706)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 18, nucl 16.5, cyto 14.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022974)
HIX0022974
HIT000384921
(
AK225791
)
(Exocyst complex component 3-like protein 2.)
genome : 45,716,202 - 45,735,138 (18,937)
query : 12 - 1,394 (1,383/1,394)
9 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;0.985;1.000;1.000;
1.000;1.000)5'
coverage = 0.992
InterPro :
IPR010326 : Exocyst complex component Sec6
GO :
0000145 : Cellular Component : exocyst
0006887 : Biological Process : exocytosis
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 18, nucl 16.5, cyto 14.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022974)
HIX0022974
HIT000338035
(
BC104947
)
Representative transcript
(Exocyst complex component 3-like protein 2.)
genome : 45,716,236 - 45,735,137 (18,902)
query : 1 - 1,348 (1,348/1,348)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
InterPro :
IPR010326 : Exocyst complex component Sec6
GO :
0000145 : Cellular Component : exocyst
0006887 : Biological Process : exocytosis
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 18, nucl 16.5, cyto 14.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022974)
Ortholog candidate ( ->
Evola
)
Danio
sp. (Zebrafish) : BC090725
Equus
sp. (Horse) : ENSECAT00000025644
Monodelphis
sp. (Opossum) : ENSMODT00000013936
Oryzias
sp. (Medaka) : ENSORLT00000000502
Pongo
sp. (Orangutan) : ENSPPYT00000011751
Takifugu
sp. (Fugu) : SINFRUT00000157866
Rattus
sp. (Rat) : XM_001075804
Macaca
sp. (Macaque) : XM_001110385
Pan
sp. (Chimpanzee) : XM_512744
Canis
sp. (Dog) : XM_541565
Bos
sp. (Cow) : XM_586456
Danio
sp. (Zebrafish) : XM_689101
HIX0022974
HIT000338037
(
BC104949
)
(Exocyst complex component 3-like protein 2.)
genome : 45,716,236 - 45,735,137 (18,902)
query : 1 - 1,348 (1,348/1,348)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
InterPro :
IPR010326 : Exocyst complex component Sec6
GO :
0000145 : Cellular Component : exocyst
0006887 : Biological Process : exocytosis
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 18, nucl 16.5, cyto 14.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022974)
HIX0022974
pHIT000033885 ( pHIT000033885 )
(Exocyst complex component 3-like protein 2.)
genome : 45,716,327 - 45,737,629 (21,303)
query : 1 - 1,431 (1,431/1,431)
10 exons
InterPro :
IPR010326 : Exocyst complex component Sec6
GO :
0000145 : Cellular Component : exocyst
0006887 : Biological Process : exocytosis
SOSUI :
SOLUBLE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022974)
CAGE tag :
H08BA30E0807
HIX0022974
HIT000080598
(
AF490256
)
(Exocyst complex component 3-like protein 2.)
genome : 45,716,327 - 45,720,945 (4,619)
query : 18 - 588 (571/588)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 0.971
InterPro :
IPR010326 : Exocyst complex component Sec6
GO :
0000145 : Cellular Component : exocyst
0006887 : Biological Process : exocytosis
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18.5, cyto_nucl 16.5, cyto 11.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022974)
HIX0226353
HIT000701859 (
ENST00000590022
)
(Hypothetical protein.)
genome : 45,741,890 - 45,748,628 (6,739)
query : 1 - 460 (460/460)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18, nucl 8, cyto_nucl 6, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0226353)
HIX0225888
HIT000264755
(
BC071948
)
(MAP/microtubule affinity-regulating kinase 4; EC=2.7.11.1;)
genome : 45,754,645 - 45,806,941 (52,297)
query : 1 - 2,106 (2,106/2,124)
7 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;0.948;1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.7.11.1
KEGG pathway :
04150 : mTOR signaling pathway (5)
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 19.5, cyto_mito 11.6667, extr 6,
cyto_pero 2.83333, cyto 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225888)
HIX0225888
HIT000704580 (
ENST00000592762
)
(Conserved hypothetical protein.)
genome : 45,754,645 - 45,783,915 (29,271)
query : 1 - 683 (683/683)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto_nucl 15, nucl 11, cyto 11, extr 5, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225888)
HIX0225888
HIT000702734 (
ENST00000590909
)
(Conserved hypothetical protein.)
genome : 45,762,151 - 45,769,539 (7,389)
query : 1 - 594 (594/594)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11, cyto_nucl 9.5, mito 7, extr 6, nucl 4,
mito_pero 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225888)
HIX0225888
HIT000700373 (
ENST00000588533
)
(Serine/threonine/dual specificity protein kinase, catalytic domain containing protein.)
genome : 45,766,249 - 45,774,935 (8,687)
query : 1 - 625 (625/625)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, mito 10, cyto_nucl 10, cyto_plas 10
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225888)
HIX0225888
HIT000081613
(
AK074578
)
Representative transcript
(MAP/microtubule affinity-regulating kinase 4; EC=2.7.11.1; MAP/microtubule affinity-regulating kinase-like 1;)
genome : 45,767,945 - 45,791,810 (23,866)
query : 1 - 2,024 (2,024/2,024)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.999)3'
coverage = 1.000
EC number :
EC 2.7.11.1
KEGG pathway :
04150 : mTOR signaling pathway (5)
InterPro :
IPR000449 : Ubiquitin-associated domain/translation elongation factor EF-Ts, N-terminal
IPR008271 : Serine/threonine-protein kinase, active site
IPR015940 : Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote
GO :
0004674 : Molecular Function : protein serine/threonine kinase activity
0005515 : Molecular Function : protein binding
0006468 : Biological Process : protein phosphorylation
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto_nucl 16, cyto 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225888)
HIX0225888
HIT000700461 (
ENST00000588621
)
(Ubiquitin-associated domain/translation elongation factor EF-Ts, N-terminal containing protein.)
genome : 45,767,945 - 45,791,810 (23,866)
query : 1 - 2,024 (2,024/2,024)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto_nucl 16, cyto 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225888)
HIX0225888
HIT000704027 (
ENST00000592207
)
(Ubiquitin-associated domain/translation elongation factor EF-Ts, N-terminal containing protein.)
genome : 45,774,734 - 45,790,922 (16,189)
query : 1 - 789 (789/789)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 20, cyto 6.5, cyto_nucl 6, nucl 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225888)
HIX0225888
HIT000702723 (
ENST00000590897
)
(Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote domain containing protein.)
genome : 45,783,403 - 45,790,922 (7,520)
query : 1 - 717 (717/717)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225888)
HIX0015227
HIT000005513
(
AK022239
)
Representative transcript
(Conserved hypothetical protein.)
genome : 45,798,568 - 45,800,306 (1,739)
query : 1 - 1,741 (1,741/1,741)
1 exon
identity = 0.998
3'(0.998)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, mito 7, cyto 6, cyto_pero 5.33333,
cyto_nucl 4.5, mito_pero 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015227)
HIX0225888
HIT000034155
(
BC009049
)
(MAP/microtubule affinity-regulating kinase 4; EC=2.7.11.1; MAP/microtubule affinity-regulating kinase-like 1;)
genome : 45,801,397 - 45,806,628 (5,232)
query : 35 - 1,159 (1,125/1,175)
3 exons
identity = 0.998
5'(1.000;1.000;0.998)3'
coverage = 0.971
EC number :
EC 2.7.11.1
KEGG pathway :
04150 : mTOR signaling pathway (5)
InterPro :
IPR001772 : Kinase associated domain 1 (KA1)
IPR028375 : KA1 domain/Ssp2 C-terminal domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 12, extr 10, cyto 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225888)
HIX0015228
HIT000033243
(
BC007462
)
(Creatine kinase M-type; EC=2.7.3.2; Creatine kinase M chain; M-CK; Contains: Creatine kinase M-type, N-terminally processed;)
genome : 45,809,671 - 45,826,133 (16,463)
query : 1 - 1,556 (1,556/1,619)
8 exons
identity = 0.998
3'(0.998;1.000;0.992;1.000;0.992;1.000;1.000;
1.000)5'
coverage = 1.000
EC number :
EC 2.7.3.2
KEGG pathway :
00330 : Arginine and proline metabolism (98)
01100 : Metabolic pathways (1346)
InterPro :
IPR014746 : Glutamine synthetase/guanido kinase, catalytic domain
IPR022413 : ATP:guanido phosphotransferase, N-terminal
IPR022414 : ATP:guanido phosphotransferase, catalytic domain
IPR022415 : ATP:guanido phosphotransferase active site
GO :
0003824 : Molecular Function : catalytic activity
0016301 : Molecular Function : kinase activity
0016772 : Molecular Function : transferase activity, transferring phosphorus-containing groups
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21, cyto_nucl 15, nucl 5, pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015228)
HIX0015228
HIT000198756 (
NM_001824
)
(Creatine kinase M-type; EC=2.7.3.2; Creatine kinase M chain; M-CK; Contains: Creatine kinase M-type, N-terminally processed;)
genome : 45,809,671 - 45,826,235 (16,565)
query : 1 - 1,658 (1,658/1,666)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 0.995
EC number :
EC 2.7.3.2
KEGG pathway :
00330 : Arginine and proline metabolism (98)
01100 : Metabolic pathways (1346)
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21, cyto_nucl 15, nucl 5, pero 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015228)
HIX0015228
HIT000103547 (
ENST00000221476
)
(Creatine kinase M-type; EC=2.7.3.2; Creatine kinase M chain; M-CK; Contains: Creatine kinase M-type, N-terminally processed;)
genome : 45,809,672 - 45,826,235 (16,564)
query : 1 - 1,657 (1,657/1,657)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
EC number :
EC 2.7.3.2
KEGG pathway :
00330 : Arginine and proline metabolism (98)
01100 : Metabolic pathways (1346)
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21, cyto_nucl 15, nucl 5, pero 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015228)
HIX0015228
HIT000194366
(
M14780
)
(Creatine kinase M-type; EC=2.7.3.2; Creatine kinase M chain; M-CK; Contains: Creatine kinase M-type, N-terminally processed;)
genome : 45,809,672 - 45,826,134 (16,463)
query : 2 - 1,562 (1,561/1,562)
8 exons
identity = 0.987
3'(0.981;1.000;1.000;0.983;0.977;1.000;0.986;
0.966)5'
coverage = 0.999
EC number :
EC 2.7.3.2
KEGG pathway :
00330 : Arginine and proline metabolism (98)
01100 : Metabolic pathways (1346)
InterPro :
IPR014746 : Glutamine synthetase/guanido kinase, catalytic domain
IPR022413 : ATP:guanido phosphotransferase, N-terminal
IPR022414 : ATP:guanido phosphotransferase, catalytic domain
IPR022415 : ATP:guanido phosphotransferase active site
GO :
0003824 : Molecular Function : catalytic activity
0016301 : Molecular Function : kinase activity
0016772 : Molecular Function : transferase activity, transferring phosphorus-containing groups
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21, cyto_nucl 15, nucl 5, pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015228)
HIX0015228
HIT000049149
(
AK129878
)
Representative transcript
(Creatine kinase M-type; EC=2.7.3.2; Creatine kinase M chain; M-CK; Contains: Creatine kinase M-type, N-terminally processed;)
genome : 45,809,672 - 45,826,133 (16,462)
query : 1 - 1,555 (1,555/1,555)
8 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000;0.992;1.000;1.000;
1.000)5'
coverage = 1.000
EC number :
EC 2.7.3.2
KEGG pathway :
00330 : Arginine and proline metabolism (98)
01100 : Metabolic pathways (1346)
InterPro :
IPR014746 : Glutamine synthetase/guanido kinase, catalytic domain
IPR022413 : ATP:guanido phosphotransferase, N-terminal
IPR022414 : ATP:guanido phosphotransferase, catalytic domain
IPR022415 : ATP:guanido phosphotransferase active site
GO :
0003824 : Molecular Function : catalytic activity
0016301 : Molecular Function : kinase activity
0016772 : Molecular Function : transferase activity, transferring phosphorus-containing groups
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21, cyto_nucl 15, nucl 5, pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015228)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK137460
Danio
sp. (Zebrafish) : AY260853
Danio
sp. (Zebrafish) : BC056706
Bos
sp. (Cow) : BC102907
Gallus
sp. (Chicken) : BX932948
Tetraodon
sp. (Tetraodon) : CR658460
Tetraodon
sp. (Tetraodon) : CR709581
Monodelphis
sp. (Opossum) : ENSMODT00000013913
Oryzias
sp. (Medaka) : ENSORLT00000000553
Oryzias
sp. (Medaka) : ENSORLT00000001973
Pongo
sp. (Orangutan) : ENSPPYT00000011754
Rattus
sp. (Rat) : M10140
Canis
sp. (Dog) : M11660
Takifugu
sp. (Fugu) : SINFRUT00000146279
Takifugu
sp. (Fugu) : SINFRUT00000150300
Takifugu
sp. (Fugu) : SINFRUT00000152148
Pan
sp. (Chimpanzee) : XM_001163660
Equus
sp. (Horse) : XM_001502522
Macaca
sp. (Macaque) : XR_013817
HIX0015228
HIT000495354
(
AK300730
)
(Creatine kinase M-type; EC=2.7.3.2; Creatine kinase M chain; M-CK;)
genome : 45,809,672 - 45,826,133 (16,462)
query : 1 - 1,445 (1,445/1,445)
7 exons
identity = 0.986
3'(0.998;1.000;1.000;1.000;0.899;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.7.3.2
KEGG pathway :
00330 : Arginine and proline metabolism (98)
01100 : Metabolic pathways (1346)
InterPro :
IPR014746 : Glutamine synthetase/guanido kinase, catalytic domain
IPR022414 : ATP:guanido phosphotransferase, catalytic domain
IPR022415 : ATP:guanido phosphotransferase active site
GO :
0003824 : Molecular Function : catalytic activity
0016301 : Molecular Function : kinase activity
0016772 : Molecular Function : transferase activity, transferring phosphorus-containing groups
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24, cyto 4, pero 2, cyto_plas 2, cyto_golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015228)
HIX0015228
HIT000432147
(
AK313281
)
(Creatine kinase M-type; EC=2.7.3.2; Creatine kinase M chain; M-CK; Contains: Creatine kinase M-type, N-terminally processed;)
genome : 45,810,008 - 45,826,133 (16,126)
query : 1 - 1,219 (1,219/1,219)
8 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;1.000;1.000;0.995;
0.982)5'
coverage = 1.000
EC number :
EC 2.7.3.2
KEGG pathway :
00330 : Arginine and proline metabolism (98)
01100 : Metabolic pathways (1346)
InterPro :
IPR014746 : Glutamine synthetase/guanido kinase, catalytic domain
IPR022413 : ATP:guanido phosphotransferase, N-terminal
IPR022414 : ATP:guanido phosphotransferase, catalytic domain
IPR022415 : ATP:guanido phosphotransferase active site
GO :
0003824 : Molecular Function : catalytic activity
0016301 : Molecular Function : kinase activity
0016772 : Molecular Function : transferase activity, transferring phosphorus-containing groups
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, cyto_golg 12, nucl 3, mito 3, pero 3,
mito_pero 3, mito_nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015228)
HIX0015228
HIT000099713
(
BT006793
)
(Creatine kinase M-type; EC=2.7.3.2; Creatine kinase M chain; M-CK; Contains: Creatine kinase M-type, N-terminally processed;)
genome : 45,810,008 - 45,822,971 (12,964)
query : 1 - 1,146 (1,146/1,146)
7 exons
identity = 0.997
3'(0.994;1.000;0.992;1.000;0.992;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.7.3.2
KEGG pathway :
00330 : Arginine and proline metabolism (98)
01100 : Metabolic pathways (1346)
InterPro :
IPR014746 : Glutamine synthetase/guanido kinase, catalytic domain
IPR022413 : ATP:guanido phosphotransferase, N-terminal
IPR022414 : ATP:guanido phosphotransferase, catalytic domain
IPR022415 : ATP:guanido phosphotransferase active site
GO :
0003824 : Molecular Function : catalytic activity
0016301 : Molecular Function : kinase activity
0016772 : Molecular Function : transferase activity, transferring phosphorus-containing groups
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21, cyto_nucl 15, nucl 5, pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015228)
HIX0015228
HIT000194448
(
M16440
)
(Creatine kinase M-type; EC=2.7.3.2; Creatine kinase M chain; M-CK; Contains: Creatine kinase M-type, N-terminally processed;)
genome : 45,810,717 - 45,810,910 (194)
query : 8 - 201 (194/214)
1 exon
identity = 0.995
3'(0.995)5'
coverage = 0.907
EC number :
EC 2.7.3.2
KEGG pathway :
00330 : Arginine and proline metabolism (98)
01100 : Metabolic pathways (1346)
InterPro :
IPR014746 : Glutamine synthetase/guanido kinase, catalytic domain
IPR022414 : ATP:guanido phosphotransferase, catalytic domain
IPR022415 : ATP:guanido phosphotransferase active site
GO :
0003824 : Molecular Function : catalytic activity
0016301 : Molecular Function : kinase activity
0016772 : Molecular Function : transferase activity, transferring phosphorus-containing groups
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 24.5, cyto_nucl 13, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015228)
HIX0212901
HIT000581375 (
ENST00000477220
)
(Ribosomal protein S9 family protein.)
genome : 45,835,956 - 45,836,382 (427)
query : 1 - 427 (427/427)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 22, mito 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0212901)
HIX0022361
HIT000090088
(
BC020346
)
(Kinesin light chain 3; KLC2-like; kinesin light chain 2;)
genome : 45,836,692 - 45,853,645 (16,954)
query : 26 - 2,044 (2,019/2,044)
10 exons
identity = 0.989
5'(0.997;0.818;0.989;0.996;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 0.988
InterPro :
IPR001440 : Tetratricopeptide TPR1
IPR002151 : Kinesin light chain
IPR011990 : Tetratricopeptide-like helical domain
IPR013026 : Tetratricopeptide repeat-containing domain
IPR015390 : Rabaptin, GTPase-Rab5 binding domain
IPR019734 : Tetratricopeptide repeat
GO :
0003777 : Molecular Function : microtubule motor activity
0005515 : Molecular Function : protein binding
0005871 : Cellular Component : kinesin complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 17, nucl 11
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022361)
HIX0022361
HIT000701212 (
ENST00000589373
)
(Kinesin light chain 3; KLC2-like; kinesin light chain 2;)
genome : 45,836,692 - 45,853,645 (16,954)
query : 1 - 2,006 (2,006/2,006)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 17, nucl 11
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022361)
HIX0040199
HIT000063659
(
AF041410
)
Representative transcript
(Conserved hypothetical protein.)
genome : 45,842,450 - 45,842,996 (547)
query : 11 - 556 (546/569)
1 exon
identity = 0.991
5'(0.991)3'
coverage = 0.982
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 12, nucl 8, extr 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0040199)
HIX0040199
HIT000710126 (
ENST00000598357
)
(Conserved hypothetical protein.)
genome : 45,842,445 - 45,842,639 (195)
query : 1 - 195 (195/195)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto 9, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0040199)
HIX0022361
HIT000215455 (
NM_177417
)
(Kinesin light chain 3; KLC2-like; kinesin light chain 2;)
genome : 45,843,998 - 45,854,778 (10,781)
query : 1 - 1,793 (1,793/1,793)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, cyto_nucl 16.5, nucl 11
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022361)
HIX0022361
HIT000039897
(
BC025318
)
(Kinesin light chain 3; KLC2-like; kinesin light chain 2;)
genome : 45,843,998 - 45,850,599 (6,602)
query : 1 - 1,171 (1,171/1,194)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR015390 : Rabaptin, GTPase-Rab5 binding domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15, cyto 14, nucl 12, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022361)
HIX0022361
HIT000598077 (
ENST00000494686
)
(Kinesin light chain 3; KLC2-like; kinesin light chain 2;)
genome : 45,843,998 - 45,850,599 (6,602)
query : 1 - 1,171 (1,171/1,194)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15, cyto 14, nucl 12, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022361)
HIX0022361
HIT000260708
(
BC062998
)
Representative transcript
(Kinesin light chain 3; KLC2-like; kinesin light chain 2;)
genome : 45,844,011 - 45,854,771 (10,761)
query : 1 - 1,773 (1,773/1,797)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001440 : Tetratricopeptide TPR1
IPR002151 : Kinesin light chain
IPR011990 : Tetratricopeptide-like helical domain
IPR013026 : Tetratricopeptide repeat-containing domain
IPR015390 : Rabaptin, GTPase-Rab5 binding domain
IPR019734 : Tetratricopeptide repeat
GO :
0003777 : Molecular Function : microtubule motor activity
0005515 : Molecular Function : protein binding
0005871 : Cellular Component : kinesin complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, cyto_nucl 16.5, nucl 11
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022361)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK158094
Danio
sp. (Zebrafish) : BC055591
Bos
sp. (Cow) : BC109786
Pongo
sp. (Orangutan) : CR859811
Canis
sp. (Dog) : ENSCAFT00000007257
Equus
sp. (Horse) : ENSECAT00000024173
Macaca
sp. (Macaque) : ENSMMUT00000030805
Oryzias
sp. (Medaka) : ENSORLT00000022403
Rattus
sp. (Rat) : ENSRNOT00000024498
Tetraodon
sp. (Tetraodon) : GSTENT00023308001
Takifugu
sp. (Fugu) : SINFRUT00000131928
Pan
sp. (Chimpanzee) : XM_524303
HIX0022361
HIT000475442 (
ENST00000391946
)
(Kinesin light chain 3; KLC2-like; kinesin light chain 2;)
genome : 45,844,011 - 45,854,778 (10,768)
query : 1 - 1,780 (1,780/1,780)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, cyto_nucl 16.5, nucl 11
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022361)
HIX0022361
HIT000265066
(
BC073841
)
(Kinesin light chain 3; KLC2-like; kinesin light chain 2;)
genome : 45,844,019 - 45,854,773 (10,755)
query : 1 - 1,764 (1,764/1,889)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001440 : Tetratricopeptide TPR1
IPR002151 : Kinesin light chain
IPR011990 : Tetratricopeptide-like helical domain
IPR013026 : Tetratricopeptide repeat-containing domain
IPR015390 : Rabaptin, GTPase-Rab5 binding domain
IPR019734 : Tetratricopeptide repeat
GO :
0003777 : Molecular Function : microtubule motor activity
0005515 : Molecular Function : protein binding
0005871 : Cellular Component : kinesin complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, cyto_nucl 16.5, nucl 11
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022361)
HIX0022361
HIT000697291 (
ENST00000585434
)
(Kinesin light chain 3; KLC2-like; kinesin light chain 2;)
genome : 45,844,019 - 45,854,773 (10,755)
query : 1 - 1,764 (1,764/1,764)
13 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, cyto_nucl 16.5, nucl 11
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022361)
HIX0022361
HIT000701675 (
ENST00000589837
)
(Kinesin light chain 3; KLC2-like; kinesin light chain 2;)
genome : 45,844,032 - 45,852,150 (8,119)
query : 1 - 973 (973/973)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 15.5, nucl 10.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022361)
HIX0022361
HIT000701898 (
ENST00000590063
)
(Kinesin light chain 3; KLC2-like; kinesin light chain 2;)
genome : 45,848,127 - 45,850,015 (1,889)
query : 1 - 809 (809/809)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 24, cyto 4, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022361)
HIX0022361
HIT000017348
(
AK092481
)
(Kinesin light chain 3; KLC2-like; kinesin light chain 2;)
genome : 45,848,658 - 45,854,778 (6,121)
query : 1 - 1,820 (1,820/1,820)
12 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.994;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001440 : Tetratricopeptide TPR1
IPR002151 : Kinesin light chain
IPR011990 : Tetratricopeptide-like helical domain
IPR013026 : Tetratricopeptide repeat-containing domain
IPR015390 : Rabaptin, GTPase-Rab5 binding domain
IPR019734 : Tetratricopeptide repeat
GO :
0003777 : Molecular Function : microtubule motor activity
0005515 : Molecular Function : protein binding
0005871 : Cellular Component : kinesin complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, cyto_nucl 15, nucl 11
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022361)
HIX0022361
HIT000574879 (
ENST00000470402
)
(Kinesin light chain 3; KLC2-like; kinesin light chain 2;)
genome : 45,848,658 - 45,854,778 (6,121)
query : 1 - 1,820 (1,820/1,820)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, cyto_nucl 15, nucl 11
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022361)
HIX0022361
HIT000391087
(
BC133037
)
(Kinesin light chain 3; KLC2-like; kinesin light chain 2;)
genome : 45,848,669 - 45,854,728 (6,060)
query : 1 - 1,759 (1,759/1,759)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001440 : Tetratricopeptide TPR1
IPR002151 : Kinesin light chain
IPR011990 : Tetratricopeptide-like helical domain
IPR013026 : Tetratricopeptide repeat-containing domain
IPR015390 : Rabaptin, GTPase-Rab5 binding domain
IPR019734 : Tetratricopeptide repeat
GO :
0003777 : Molecular Function : microtubule motor activity
0005515 : Molecular Function : protein binding
0005871 : Cellular Component : kinesin complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, cyto_nucl 15, nucl 11
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022361)
HIX0022361
HIT000389010
(
BC126418
)
(Kinesin light chain 3; KLC2-like; kinesin light chain 2;)
genome : 45,848,669 - 45,854,724 (6,056)
query : 1 - 1,755 (1,755/1,755)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001440 : Tetratricopeptide TPR1
IPR002151 : Kinesin light chain
IPR011990 : Tetratricopeptide-like helical domain
IPR013026 : Tetratricopeptide repeat-containing domain
IPR015390 : Rabaptin, GTPase-Rab5 binding domain
IPR019734 : Tetratricopeptide repeat
GO :
0003777 : Molecular Function : microtubule motor activity
0005515 : Molecular Function : protein binding
0005871 : Cellular Component : kinesin complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, cyto_nucl 15, nucl 11
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022361)
HIX0225858
HIT000321739
(
X52222
)
(Non-protein coding transcript.)
genome : 45,854,721 - 45,854,995 (275)
query : 1 - 275 (275/275)
1 exon
identity = 0.993
3'(0.993)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225858)
HIX0225858
HIT000050120
(
AK130849
)
Representative transcript
(TFIIH basal transcription factor complex helicase XPD subunit; EC=3.6.4.12; Basic transcription factor 2 80 kDa subunit; BTF2 p80; CXPD; DNA excision repair protein ERCC-2; DNA repair protein complementing XP-D cells; TFIIH basal transcription factor complex 80 kDa subunit; TFIIH 80 kDa subunit; TFIIH p80; Xeroderma pigmentosum group D-complementing protein;)
genome : 45,854,853 - 45,865,189 (10,337)
query : 1 - 1,488 (1,488/1,488)
12 exons
identity = 0.997
3'(0.992;0.993;1.000;1.000;1.000;1.000;1.000;
0.984;1.000;1.000;1.000;0.998)5'
coverage = 1.000
EC number :
EC 3.6.4.12
InterPro :
IPR001945 : Xeroderma pigmentosum group D protein
IPR006555 : ATP-dependent helicase, C-terminal
IPR010643 : Domain of unknown function DUF1227
IPR013020 : DNA helicase (DNA repair), Rad3 type
GO :
0003676 : Molecular Function : nucleic acid binding
0003677 : Molecular Function : DNA binding
0004003 : Molecular Function : ATP-dependent DNA helicase activity
0005524 : Molecular Function : ATP binding
0005634 : Cellular Component : nucleus
0006139 : Biological Process : nucleobase-containing compound metabolic process
0006289 : Biological Process : nucleotide-excision repair
0008026 : Molecular Function : ATP-dependent helicase activity
0016818 : Molecular Function : hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225858)
HIX0225858
HIT000475438 (
ENST00000391942
)
(DNA helicase (DNA repair), Rad3 type family protein.)
genome : 45,854,853 - 45,865,189 (10,337)
query : 1 - 1,488 (1,488/1,488)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225858)
HIX0225858
HIT000017739
(
AK092872
)
(TFIIH basal transcription factor complex helicase XPD subunit; EC=3.6.4.12; Basic transcription factor 2 80 kDa subunit; BTF2 p80; CXPD; DNA excision repair protein ERCC-2; DNA repair protein complementing XP-D cells; TFIIH basal transcription factor complex 80 kDa subunit; TFIIH 80 kDa subunit; TFIIH p80; Xeroderma pigmentosum group D-complementing protein;)
genome : 45,854,853 - 45,862,196 (7,344)
query : 1 - 2,405 (2,405/2,405)
10 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;1.000;1.000;0.992;
1.000;1.000;0.997)5'
coverage = 1.000
EC number :
EC 3.6.4.12
InterPro :
IPR001945 : Xeroderma pigmentosum group D protein
IPR006555 : ATP-dependent helicase, C-terminal
IPR013020 : DNA helicase (DNA repair), Rad3 type
GO :
0003676 : Molecular Function : nucleic acid binding
0003677 : Molecular Function : DNA binding
0004003 : Molecular Function : ATP-dependent DNA helicase activity
0005524 : Molecular Function : ATP binding
0005634 : Cellular Component : nucleus
0006139 : Biological Process : nucleobase-containing compound metabolic process
0006289 : Biological Process : nucleotide-excision repair
0008026 : Molecular Function : ATP-dependent helicase activity
0016818 : Molecular Function : hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 26, nucl 2, cyto 2, cyto_nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225858)
HIX0225858
HIT000700492 (
ENST00000588652
)
(DNA helicase (DNA repair), Rad3 type family protein.)
genome : 45,854,853 - 45,862,196 (7,344)
query : 1 - 2,405 (2,405/2,405)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 23, mito 3, nucl 2, cyto 2, cyto_nucl 2,
mito_pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225858)
HIX0027631
HIT000050264
(
AK130993
)
Representative transcript
(Conserved hypothetical protein.)
genome : 45,859,092 - 45,859,589 (498)
query : 1 - 498 (498/498)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, nucl 9, cyto_nucl 9, cyto 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027631)
HIX0225936
HIT000103550 (
ENST00000221481
)
(Xeroderma pigmentosum group D protein family protein.)
genome : 45,867,033 - 45,873,815 (6,783)
query : 1 - 745 (745/745)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 13, nucl 10.5, cyto_nucl 8.5, cyto 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225936)
HIX0225936
HIT000497982
(
AK303358
)
Representative transcript
(DEAD2 domain containing protein.)
genome : 45,867,033 - 45,873,815 (6,783)
query : 1 - 745 (745/745)
8 exons
identity = 0.997
3'(1.000;0.993;1.000;1.000;1.000;1.000;0.990;
1.000)5'
coverage = 1.000
InterPro :
IPR010614 : DEAD2
IPR014013 : Helicase, superfamily 1/2, ATP-binding domain, DinG/Rad3-type
GO :
0003677 : Molecular Function : DNA binding
0004003 : Molecular Function : ATP-dependent DNA helicase activity
0005524 : Molecular Function : ATP binding
0016817 : Molecular Function : hydrolase activity, acting on acid anhydrides
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23.5, cyto_nucl 15.5, nucl 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225936)
HIX0225936
HIT000697983 (
ENST00000586131
)
(DNA helicase (DNA repair), Rad3 type family protein.)
genome : 45,867,244 - 45,873,791 (6,548)
query : 1 - 1,007 (1,007/1,007)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225936)
HIX0225936
HIT000703132 (
ENST00000591309
)
(DEAD2 domain containing protein.)
genome : 45,867,295 - 45,873,815 (6,521)
query : 1 - 557 (557/557)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23.5, cyto_nucl 15.5, nucl 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225936)
HIX0225936
HIT000698583 (
ENST00000586737
)
(DEAD2 domain containing protein.)
genome : 45,867,349 - 45,872,412 (5,064)
query : 15 - 481 (467/481)
4 exons
identity = 0.996
3'(1.000;1.000;1.000;0.991)5'
coverage = 0.971
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 12, extr 10, nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225936)
HIX0225936
HIT000698289 (
ENST00000586441
)
(DEAD2 domain containing protein.)
genome : 45,867,494 - 45,872,412 (4,919)
query : 15 - 682 (668/682)
5 exons
identity = 0.997
3'(1.000;1.000;1.000;1.000;0.991)5'
coverage = 0.979
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, cyto 3, nucl 2, mito 2, mito_nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225936)
HIX0225936
HIT000698701 (
ENST00000586856
)
(DEAD2 domain containing protein.)
genome : 45,868,300 - 45,873,786 (5,487)
query : 1 - 690 (690/690)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 28, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225936)
HIX0225910
HIT000090172
(
BC020589
)
(RelA-associated inhibitor family protein.)
genome : 45,882,892 - 45,895,270 (12,379)
query : 1 - 1,361 (1,361/1,447)
6 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001452 : SH3 domain
IPR002110 : Ankyrin repeat
IPR020683 : Ankyrin repeat-containing domain
IPR028320 : RelA-associated inhibitor
GO :
0005515 : Molecular Function : protein binding
0006351 : Biological Process : transcription, DNA-templated
0006915 : Biological Process : apoptotic process
0008134 : Molecular Function : transcription factor binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16.5, nucl 14.5, cyto 11.5, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225910)
HIX0225910
HIT000066257
(
AF078037
)
Representative transcript
(RelA-associated inhibitor family protein.)
genome : 45,882,896 - 45,896,425 (13,530)
query : 30 - 2,551 (2,522/2,620)
6 exons
identity = 0.992
3'(1.000;1.000;1.000;1.000;1.000;0.984)5'
coverage = 0.971
InterPro :
IPR001452 : SH3 domain
IPR002110 : Ankyrin repeat
IPR020683 : Ankyrin repeat-containing domain
IPR028320 : RelA-associated inhibitor
GO :
0005515 : Molecular Function : protein binding
0006351 : Biological Process : transcription, DNA-templated
0006915 : Biological Process : apoptotic process
0008134 : Molecular Function : transcription factor binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24, cyto_nucl 18, cyto 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225910)
HIX0225910
HIT000086015
(
BC001475
)
(RelA-associated inhibitor family protein.)
genome : 45,882,898 - 45,895,600 (12,703)
query : 17 - 1,701 (1,685/1,721)
6 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.991
InterPro :
IPR001452 : SH3 domain
IPR002110 : Ankyrin repeat
IPR020683 : Ankyrin repeat-containing domain
IPR028320 : RelA-associated inhibitor
GO :
0005515 : Molecular Function : protein binding
0006351 : Biological Process : transcription, DNA-templated
0006915 : Biological Process : apoptotic process
0008134 : Molecular Function : transcription factor binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23.5, cyto_nucl 18.5, cyto 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225910)
HIX0225910
HIT000699114 (
ENST00000587270
)
(RelA-associated inhibitor family protein.)
genome : 45,882,896 - 45,896,425 (13,530)
query : 1 - 2,512 (2,512/2,512)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24, cyto_nucl 18, cyto 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225910)
HIX0225910
HIT000703808 (
ENST00000591986
)
(Conserved hypothetical protein.)
genome : 45,882,896 - 45,888,876 (5,981)
query : 1 - 648 (648/648)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, nucl 2.5, mito 2, cyto_nucl 2, lyso 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225910)
HIX0225910
HIT000701210 (
ENST00000589371
)
(SH3 domain containing protein.)
genome : 45,882,896 - 45,885,850 (2,955)
query : 1 - 355 (355/355)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, cyto_nucl 13, extr 9, nucl 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225910)
HIX0225910
HIT000468704
(
DQ986418
)
(RelA-associated inhibitor family protein.)
genome : 45,883,448 - 45,895,689 (12,242)
query : 1 - 1,224 (1,224/1,224)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001452 : SH3 domain
IPR002110 : Ankyrin repeat
IPR020683 : Ankyrin repeat-containing domain
IPR028320 : RelA-associated inhibitor
GO :
0005515 : Molecular Function : protein binding
0006351 : Biological Process : transcription, DNA-templated
0006915 : Biological Process : apoptotic process
0008134 : Molecular Function : transcription factor binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24, cyto_nucl 18, cyto 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225910)
HIX0225910
HIT000701696 (
ENST00000589858
)
(Ankyrin repeat-containing domain containing protein.)
genome : 45,885,822 - 45,889,361 (3,540)
query : 1 - 610 (610/610)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, nucl 7, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225910)
HIX0225902
HIT000049597
(
AK130326
)
Representative transcript
(RelA-associated inhibitor family protein.)
genome : 45,897,911 - 45,901,600 (3,690)
query : 16 - 2,176 (2,161/2,176)
6 exons
identity = 0.996
3'(0.994;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.993
InterPro :
IPR028320 : RelA-associated inhibitor
GO :
0006351 : Biological Process : transcription, DNA-templated
0006915 : Biological Process : apoptotic process
0008134 : Molecular Function : transcription factor binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28.5, cyto_nucl 17
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225902)
HIX0225902
HIT000697759 (
ENST00000585905
)
(RelA-associated inhibitor family protein.)
genome : 45,897,911 - 45,901,600 (3,690)
query : 16 - 2,176 (2,161/2,176)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.993
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28.5, cyto_nucl 17
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225902)
HIX0225902
HIT000705044 (
ENST00000593226
)
(RelA-associated inhibitor family protein.)
genome : 45,900,130 - 45,909,585 (9,456)
query : 1 - 525 (525/525)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14, cyto_nucl 13.5, extr 9, cyto 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225902)
HIX0225902
HIT000703954 (
ENST00000592134
)
(RelA-associated inhibitor family protein.)
genome : 45,901,281 - 45,908,321 (7,041)
query : 1 - 392 (392/392)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, extr 12, cyto_nucl 11, nucl 6, extr_plas 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0225902)
HIX0039946
HIT000118341 (
ENST00000309424
)
(DNA-directed RNA polymerase I subunit RPA34; A34.5; Antisense to ERCC-1 protein; ASE-1; CD3-epsilon-associated protein; CAST; CD3E-associated protein; RNA polymerase I-associated factor PAF49;)
genome : 45,909,467 - 45,914,024 (4,558)
query : 1 - 3,286 (3,286/3,286)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21.5, cyto_nucl 15, cyto 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039946)
HIX0039946
HIT000203907 (
NM_012099
)
(DNA-directed RNA polymerase I subunit RPA34; A34.5; Antisense to ERCC-1 protein; ASE-1; CD3-epsilon-associated protein; CAST; CD3E-associated protein; RNA polymerase I-associated factor PAF49;)
genome : 45,909,467 - 45,914,024 (4,558)
query : 1 - 3,286 (3,286/3,286)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21.5, cyto_nucl 15, cyto 7.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039946)
HIX0039946
HIT000221981
(
U86751
)
Representative transcript
(DNA-directed RNA polymerase I subunit RPA34; A34.5; Antisense to ERCC-1 protein; ASE-1; CD3-epsilon-associated protein; CAST; CD3E-associated protein; RNA polymerase I-associated factor PAF49;)
genome : 45,909,467 - 45,914,024 (4,558)
query : 1 - 3,286 (3,286/3,286)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR013240 : DNA-directed RNA polymerase I, subunit RPA34.5
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21.5, cyto_nucl 15, cyto 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039946)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : BC071199
Bos
sp. (Cow) : BC119897
Macaca
sp. (Macaque) : ENSMMUT00000001034
Pongo
sp. (Orangutan) : ENSPPYT00000011759
Rattus
sp. (Rat) : ENSRNOT00000034266
Pan
sp. (Chimpanzee) : XM_001164895
Monodelphis
sp. (Opossum) : XM_001366022
Equus
sp. (Horse) : XM_001502587
Canis
sp. (Dog) : XM_850025
HIX0039946
HIT000259417
(
BC054044
)
(DNA-directed RNA polymerase I subunit RPA34.)
genome : 45,909,591 - 45,911,866 (2,276)
query : 1 - 1,004 (1,004/1,018)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR013240 : DNA-directed RNA polymerase I, subunit RPA34.5
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24.5, cyto_nucl 14.5, cyto 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039946)
HIX0039946
HIT000098278
(
BC046141
)
(DNA-directed RNA polymerase I subunit RPA34.)
genome : 45,909,667 - 45,912,388 (2,722)
query : 1 - 1,450 (1,450/1,464)
3 exons
identity = 0.999
5'(0.994;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR013240 : DNA-directed RNA polymerase I, subunit RPA34.5
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24.5, cyto_nucl 16, cyto 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039946)
HIX0039946
HIT000339148
(
BC108889
)
(DNA-directed RNA polymerase I subunit RPA34; A34.5; Antisense to ERCC-1 protein; ASE-1; CD3-epsilon-associated protein; CAST; CD3E-associated protein; RNA polymerase I-associated factor PAF49;)
genome : 45,909,702 - 45,913,001 (3,300)
query : 1 - 2,025 (2,025/2,025)
3 exons
identity = 0.998
5'(0.996;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR013240 : DNA-directed RNA polymerase I, subunit RPA34.5
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21.5, cyto_nucl 15, cyto 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039946)
HIX0039946
HIT000424980
(
AK292183
)
(DNA-directed RNA polymerase I subunit RPA34; A34.5; Antisense to ERCC-1 protein; ASE-1; CD3-epsilon-associated protein; CAST; CD3E-associated protein; RNA polymerase I-associated factor PAF49;)
genome : 45,909,902 - 45,913,040 (3,139)
query : 1 - 1,867 (1,867/1,867)
3 exons
identity = 0.997
5'(0.987;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR013240 : DNA-directed RNA polymerase I, subunit RPA34.5
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21.5, cyto_nucl 15, cyto 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039946)
HIX0039946
HIT000087362
(
BC009705
)
(DNA-directed RNA polymerase I subunit RPA34.)
genome : 45,909,910 - 45,912,499 (2,590)
query : 1 - 1,318 (1,318/1,332)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR013240 : DNA-directed RNA polymerase I, subunit RPA34.5
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23.5, cyto_nucl 15.5, cyto 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039946)
HIX0039946
HIT000091494
(
BC028109
)
(DNA-directed RNA polymerase I subunit RPA34.)
genome : 45,909,917 - 45,913,048 (3,132)
query : 1 - 1,859 (1,859/1,976)
3 exons
identity = 0.999
5'(1.000;1.000;0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26.5, cyto_nucl 16, cyto 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039946)
HIX0039946
HIT000704670 (
ENST00000592852
)
(DNA-directed RNA polymerase I subunit RPA34.)
genome : 45,909,920 - 45,911,877 (1,958)
query : 1 - 1,061 (1,061/1,061)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23, cyto_nucl 16.5, cyto 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039946)
HIX0039946
HIT000261814
(
BC065251
)
(DNA-directed RNA polymerase I subunit RPA34.)
genome : 45,909,937 - 45,912,502 (2,566)
query : 2 - 1,295 (1,294/1,309)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 0.999
InterPro :
IPR013240 : DNA-directed RNA polymerase I, subunit RPA34.5
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23.5, cyto_nucl 15.5, cyto 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039946)
HIX0039946
HIT000095446
(
BC038992
)
(DNA-directed RNA polymerase I subunit RPA34; A34.5; Antisense to ERCC-1 protein; ASE-1; CD3-epsilon-associated protein; CAST; CD3E-associated protein; RNA polymerase I-associated factor PAF49;)
genome : 45,909,950 - 45,913,995 (4,046)
query : 12 - 2,785 (2,774/2,802)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 0.996
InterPro :
IPR013240 : DNA-directed RNA polymerase I, subunit RPA34.5
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21.5, cyto_nucl 15, cyto 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039946)
HIX0039946
HIT000062438
(
AF017633
)
(DNA-directed RNA polymerase I subunit RPA34; A34.5; Antisense to ERCC-1 protein; ASE-1; CD3-epsilon-associated protein; CAST; CD3E-associated protein; RNA polymerase I-associated factor PAF49;)
genome : 45,909,949 - 45,913,042 (3,094)
query : 1 - 1,828 (1,828/1,841)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR013240 : DNA-directed RNA polymerase I, subunit RPA34.5
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21.5, cyto_nucl 15.5, cyto 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039946)
HIX0039946
HIT000701642 (
ENST00000589804
)
(DNA-directed RNA polymerase I subunit RPA34; A34.5; Antisense to ERCC-1 protein; ASE-1; CD3-epsilon-associated protein; CAST; CD3E-associated protein; RNA polymerase I-associated factor PAF49;)
genome : 45,909,949 - 45,913,044 (3,096)
query : 1 - 1,830 (1,830/1,830)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21.5, cyto_nucl 15.5, cyto 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039946)
HIX0022267
HIT000198912 (
NM_001983
)
(DNA excision repair protein ERCC-1;)
genome : 45,910,591 - 45,927,177 (16,587)
query : 1 - 3,382 (3,382/3,400)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto_nucl 17.5, cyto 9
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022267)
HIX0022267
HIT000654229 (
NM_001166049
)
(DNA excision repair protein ERCC-1 isoform 3.)
genome : 45,910,591 - 45,927,177 (16,587)
query : 1 - 3,310 (3,310/3,328)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto_nucl 17.5, cyto 10
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022267)
HIX0022267
HIT000115711 (
ENST00000300853
)
(DNA excision repair protein ERCC-1;)
genome : 45,910,591 - 45,927,623 (17,033)
query : 1 - 3,828 (3,828/3,828)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto_nucl 17.5, cyto 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022267)
HIX0022267
HIT000016906
(
AK092039
)
(DNA excision repair protein ERCC-1;)
genome : 45,910,592 - 45,982,086 (71,495)
query : 1 - 3,119 (3,119/3,119)
9 exons
identity = 0.997
3'(0.997;1.000;1.000;1.000;1.000;1.000;0.990;
1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000445 : Helix-hairpin-helix motif
IPR003583 : Helix-hairpin-helix DNA-binding motif, class 1
IPR004579 : DNA repair protein rad10
IPR010994 : RuvA domain 2-like
IPR011335 : Restriction endonuclease type II-like
GO :
0003677 : Molecular Function : DNA binding
0003684 : Molecular Function : damaged DNA binding
0004519 : Molecular Function : endonuclease activity
0005634 : Cellular Component : nucleus
0006281 : Biological Process : DNA repair
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21.5, cyto_nucl 15.5, cyto 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022267)
HIX0022267
HIT000521632 (
ENST00000423698
)
(DNA excision repair protein ERCC-1;)
genome : 45,910,592 - 45,982,086 (71,495)
query : 1 - 3,119 (3,119/3,119)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21.5, cyto_nucl 15.5, cyto 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022267)
HIX0039946
HIT000702621 (
ENST00000590794
)
(Conserved hypothetical protein.)
genome : 45,911,390 - 45,911,859 (470)
query : 20 - 489 (470/489)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 0.961
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0039946)
HIX0022267
HIT000034085
(
BC008930
)
(DNA excision repair protein ERCC-1;)
genome : 45,912,864 - 45,927,093 (14,230)
query : 1 - 1,025 (1,025/1,087)
10 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;0.990;
1.000;1.000;1.000)5'
coverage = 0.999
InterPro :
IPR000445 : Helix-hairpin-helix motif
IPR003583 : Helix-hairpin-helix DNA-binding motif, class 1
IPR004579 : DNA repair protein rad10
IPR010994 : RuvA domain 2-like
IPR011335 : Restriction endonuclease type II-like
GO :
0003677 : Molecular Function : DNA binding
0003684 : Molecular Function : damaged DNA binding
0004519 : Molecular Function : endonuclease activity
0005634 : Cellular Component : nucleus
0006281 : Biological Process : DNA repair
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto_nucl 17.5, cyto 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022267)
HIX0022267
HIT000700578 (
ENST00000588738
)
(DNA excision repair protein ERCC-1 isoform 3.)
genome : 45,912,804 - 45,917,874 (5,071)
query : 1 - 586 (586/586)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto 12, cyto_nucl 10, nucl 6, extr_plas 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022267)
HIX0022267
HIT000195265
(
M28650
)
(DNA excision repair protein ERCC-1;)
genome : 45,912,872 - 45,927,173 (14,302)
query : 1 - 1,097 (1,097/1,098)
10 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;0.990;
1.000;1.000;1.000)5'
coverage = 0.999
InterPro :
IPR000445 : Helix-hairpin-helix motif
IPR003583 : Helix-hairpin-helix DNA-binding motif, class 1
IPR004579 : DNA repair protein rad10
IPR010994 : RuvA domain 2-like
IPR011335 : Restriction endonuclease type II-like
GO :
0003677 : Molecular Function : DNA binding
0003684 : Molecular Function : damaged DNA binding
0004519 : Molecular Function : endonuclease activity
0005634 : Cellular Component : nucleus
0006281 : Biological Process : DNA repair
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto_nucl 17.5, cyto 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022267)
HIX0022267
HIT000061671
(
AF001925
)
Representative transcript
(DNA excision repair protein ERCC-1;)
genome : 45,912,872 - 45,927,173 (14,302)
query : 1 - 1,097 (1,097/1,097)
10 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;0.990;
1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000445 : Helix-hairpin-helix motif
IPR003583 : Helix-hairpin-helix DNA-binding motif, class 1
IPR004579 : DNA repair protein rad10
IPR010994 : RuvA domain 2-like
IPR011335 : Restriction endonuclease type II-like
GO :
0003677 : Molecular Function : DNA binding
0003684 : Molecular Function : damaged DNA binding
0004519 : Molecular Function : endonuclease activity
0005634 : Cellular Component : nucleus
0006281 : Biological Process : DNA repair
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto_nucl 17.5, cyto 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022267)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK088271
Pan
sp. (Chimpanzee) : AY369808
Bos
sp. (Cow) : BC116163
Danio
sp. (Zebrafish) : BC152194
Pongo
sp. (Orangutan) : ENSPPYT00000011760
Rattus
sp. (Rat) : ENSRNOT00000024113
Tetraodon
sp. (Tetraodon) : GSTENT00030504001
Takifugu
sp. (Fugu) : SINFRUT00000133686
Macaca
sp. (Macaque) : XM_001105868
Monodelphis
sp. (Opossum) : XM_001365960
Equus
sp. (Horse) : XM_001502594
Canis
sp. (Dog) : XM_850023
HIX0022267
HIT000194208
(
M13194
)
(DNA excision repair protein ERCC-1;)
genome : 45,912,872 - 45,927,173 (14,302)
query : 1 - 1,097 (1,097/1,097)
10 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;0.990;
1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000445 : Helix-hairpin-helix motif
IPR003583 : Helix-hairpin-helix DNA-binding motif, class 1
IPR004579 : DNA repair protein rad10
IPR010994 : RuvA domain 2-like
IPR011335 : Restriction endonuclease type II-like
GO :
0003677 : Molecular Function : DNA binding
0003684 : Molecular Function : damaged DNA binding
0004519 : Molecular Function : endonuclease activity
0005634 : Cellular Component : nucleus
0006281 : Biological Process : DNA repair
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto_nucl 17.5, cyto 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022267)
HIX0022267
HIT000061170
(
AB069681
)
(DNA excision repair protein ERCC-1 isoform 3.)
genome : 45,912,872 - 45,927,097 (14,226)
query : 1 - 949 (949/949)
9 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;0.990;1.000;
1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000445 : Helix-hairpin-helix motif
IPR003583 : Helix-hairpin-helix DNA-binding motif, class 1
IPR004579 : DNA repair protein rad10
IPR010994 : RuvA domain 2-like
IPR011335 : Restriction endonuclease type II-like
GO :
0003677 : Molecular Function : DNA binding
0003684 : Molecular Function : damaged DNA binding
0004519 : Molecular Function : endonuclease activity
0005634 : Cellular Component : nucleus
0006281 : Biological Process : DNA repair
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto_nucl 17.5, cyto 10
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022267)
HIX0022267
HIT000132822 (
ENST00000340192
)
(DNA excision repair protein ERCC-1 isoform 3.)
genome : 45,912,872 - 45,927,097 (14,226)
query : 1 - 949 (949/949)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto_nucl 17.5, cyto 10
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022267)
HIX0022267
HIT000702528 (
ENST00000590701
)
(DNA excision repair protein ERCC-1;)
genome : 45,912,874 - 45,922,444 (9,571)
query : 1 - 345 (345/345)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 23, cyto 4.5, cyto_nucl 4.5, nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022267)
HIX0022267
HIT000703458 (
ENST00000591636
)
(DNA excision repair protein ERCC-1;)
genome : 45,912,877 - 45,926,759 (13,883)
query : 1 - 836 (836/836)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto_nucl 13, extr 7, cyto 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022267)
HIX0022267
HIT000701005 (
ENST00000589165
)
(DNA excision repair protein ERCC-1;)
genome : 45,912,926 - 45,927,625 (14,700)
query : 1 - 1,453 (1,453/1,453)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto_nucl 17.5, cyto 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022267)
HIX0022267
HIT000433750
(
AK314884
)
(DNA excision repair protein ERCC-1;)
genome : 45,912,933 - 45,927,108 (14,176)
query : 2 - 972 (971/972)
10 exons
identity = 0.998
3'(1.000;1.000;1.000;0.990;1.000;1.000;1.000;
0.995;1.000;1.000)5'
coverage = 0.999
InterPro :
IPR000445 : Helix-hairpin-helix motif
IPR003583 : Helix-hairpin-helix DNA-binding motif, class 1
IPR004579 : DNA repair protein rad10
IPR010994 : RuvA domain 2-like
IPR011335 : Restriction endonuclease type II-like
GO :
0003677 : Molecular Function : DNA binding
0003684 : Molecular Function : damaged DNA binding
0004519 : Molecular Function : endonuclease activity
0005634 : Cellular Component : nucleus
0006281 : Biological Process : DNA repair
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23, cyto_nucl 17.5, cyto 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022267)
HIX0022267
HIT000266665
(
BT019806
)
(DNA excision repair protein ERCC-1;)
genome : 45,912,935 - 45,926,632 (13,698)
query : 1 - 892 (892/894)
9 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;0.990;
1.000;1.000)5'
coverage = 0.998
InterPro :
IPR000445 : Helix-hairpin-helix motif
IPR003583 : Helix-hairpin-helix DNA-binding motif, class 1
IPR004579 : DNA repair protein rad10
IPR010994 : RuvA domain 2-like
IPR011335 : Restriction endonuclease type II-like
GO :
0003677 : Molecular Function : DNA binding
0003684 : Molecular Function : damaged DNA binding
0004519 : Molecular Function : endonuclease activity
0005634 : Cellular Component : nucleus
0006281 : Biological Process : DNA repair
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto_nucl 17.5, cyto 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022267)
HIX0022267
HIT000319930 (
NM_202001
)
(DNA excision repair protein ERCC-1 isoform 1.)
genome : 45,916,692 - 45,926,820 (10,129)
query : 1 - 1,274 (1,274/1,291)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21.5, cyto_nucl 16.5, cyto 8.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022267)
HIX0022267
HIT000102237 (
ENST00000013807
)
(DNA excision repair protein ERCC-1 isoform 1.)
genome : 45,916,692 - 45,926,824 (10,133)
query : 1 - 1,278 (1,278/1,278)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21.5, cyto_nucl 16.5, cyto 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022267)
HIX0022267
HIT000704262 (
ENST00000592444
)
(DNA excision repair protein ERCC-1 isoform 1.)
genome : 45,916,694 - 45,920,117 (3,424)
query : 1 - 449 (449/449)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, cyto 10, mito 4, lyso 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022267)
HIX0022267
HIT000704228 (
ENST00000592410
)
(DNA excision repair protein ERCC-1 isoform 1.)
genome : 45,916,694 - 45,917,735 (1,042)
query : 1 - 508 (508/508)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, extr 8, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022267)
HIX0022267
HIT000053833
(
BC052813
)
(DNA excision repair protein ERCC-1 isoform 1.)
genome : 45,916,716 - 45,926,763 (10,048)
query : 1 - 1,193 (1,193/1,207)
8 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;0.990;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR004579 : DNA repair protein rad10
IPR010994 : RuvA domain 2-like
IPR011335 : Restriction endonuclease type II-like
GO :
0003684 : Molecular Function : damaged DNA binding
0004519 : Molecular Function : endonuclease activity
0005634 : Cellular Component : nucleus
0006281 : Biological Process : DNA repair
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21.5, cyto_nucl 16.5, cyto 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022267)
HIX0022267
HIT000701220 (
ENST00000589381
)
(DNA excision repair protein ERCC-1;)
genome : 45,916,935 - 45,926,743 (9,809)
query : 1 - 738 (738/738)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 14.5, cyto 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022267)
HIX0022267
HIT000699729 (
ENST00000587888
)
(Mating-type switching protein swi10;)
genome : 45,916,935 - 45,923,640 (6,706)
query : 1 - 556 (556/556)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 23, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022267)
HIX0022267
HIT000703904 (
ENST00000592083
)
(DNA excision repair protein ERCC-1;)
genome : 45,917,221 - 45,953,983 (36,763)
query : 1 - 938 (938/938)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto_nucl 17.5, cyto 10
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022267)
HIX0022267
HIT000704723 (
ENST00000592905
)
(DNA excision repair protein ERCC-1;)
genome : 45,917,996 - 45,927,130 (9,135)
query : 1 - 882 (882/882)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto_nucl 17.5, cyto 10
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022267)
HIX0022267
HIT000703844 (
ENST00000592023
)
(DNA excision repair protein ERCC-1;)
genome : 45,918,119 - 45,926,863 (8,745)
query : 1 - 738 (738/738)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, cyto 11
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022267)
HIX0022267
HIT000700140 (
ENST00000588300
)
(DNA excision repair protein ERCC-1;)
genome : 45,919,749 - 45,927,196 (7,448)
query : 1 - 1,055 (1,055/1,055)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto_nucl 17, cyto 11
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022267)
HIX0022267
HIT000701053 (
ENST00000589214
)
(DNA excision repair protein ERCC-1;)
genome : 45,923,582 - 45,932,468 (8,887)
query : 1 - 674 (674/674)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto_nucl 18, cyto 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022267)
HIX0022267
HIT000367366
(
S94539
)
(DNA excision repair protein ERCC-1;)
genome : 45,924,507 - 45,924,831 (325)
query : 1 - 322 (322/322)
1 exon
identity = 0.988
3'(0.988)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, nucl 5, mito 5, mito_nucl 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022267)
HIX0022267
HIT000079619
(
AF433652
)
(Non-protein coding transcript.)
genome : 45,926,527 - 45,927,152 (626)
query : 1 - 227 (227/240)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 0.946
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022267)
HIX0015233
HIT000203307 (
NM_006732
)
(Protein fosB; G0/G1 switch regulatory protein 3;)
genome : 45,971,253 - 45,978,437 (7,185)
query : 1 - 3,776 (3,776/3,776)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31.5, cyto_nucl 16.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015233)
HIX0015233
HIT000485961 (
NM_001114171
)
(Protein fosB isoform 2.)
genome : 45,971,253 - 45,978,437 (7,185)
query : 1 - 3,668 (3,668/3,668)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27, cyto_nucl 17.5, cyto 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015233)
HIX0015233
HIT000193952
(
L49169
)
(Protein fosB; G0/G1 switch regulatory protein 3;)
genome : 45,971,253 - 45,978,436 (7,184)
query : 1 - 3,775 (3,775/3,775)
4 exons
identity = 0.998
5'(0.997;1.000;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR000837 : AP-1 transcription factor
IPR004827 : Basic-leucine zipper domain
GO :
0003677 : Molecular Function : DNA binding
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
0043565 : Molecular Function : sequence-specific DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31.5, cyto_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015233)
HIX0015233
HIT000308420 (
ENST00000353609
)
(Protein fosB; G0/G1 switch regulatory protein 3;)
genome : 45,971,253 - 45,978,436 (7,184)
query : 1 - 3,775 (3,775/3,775)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31.5, cyto_nucl 16.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015233)
HIX0015233
HIT000484695
(
EU178109
)
(Protein fosB isoform 2.)
genome : 45,971,253 - 45,978,436 (7,184)
query : 1 - 3,667 (3,667/3,667)
3 exons
identity = 0.998
5'(0.997;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR000837 : AP-1 transcription factor
GO :
0003677 : Molecular Function : DNA binding
0005634 : Cellular Component : nucleus
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27, cyto_nucl 17.5, cyto 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015233)
HIX0015233
HIT000484696
(
EU178110
)
(Protein fosB; G0/G1 switch regulatory protein 3;)
genome : 45,971,253 - 45,978,436 (7,184)
query : 1 - 3,634 (3,634/3,634)
5 exons
identity = 0.998
5'(0.997;1.000;1.000;1.000;0.997)3'
coverage = 1.000
InterPro :
IPR000837 : AP-1 transcription factor
IPR004827 : Basic-leucine zipper domain
GO :
0003677 : Molecular Function : DNA binding
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
0043565 : Molecular Function : sequence-specific DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31.5, cyto_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015233)
HIX0015233
HIT000484697
(
EU178111
)
(Protein fosB; G0/G1 switch regulatory protein 3;)
genome : 45,971,253 - 45,978,436 (7,184)
query : 1 - 3,658 (3,658/3,658)
4 exons
identity = 0.998
5'(0.997;1.000;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR000837 : AP-1 transcription factor
IPR004827 : Basic-leucine zipper domain
GO :
0003677 : Molecular Function : DNA binding
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
0043565 : Molecular Function : sequence-specific DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015233)
HIX0015233
HIT000484698
(
EU178112
)
(Protein fosB; G0/G1 switch regulatory protein 3;)
genome : 45,971,253 - 45,978,436 (7,184)
query : 1 - 3,550 (3,550/3,550)
3 exons
identity = 0.998
5'(0.997;1.000;0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27, cyto_nucl 17.5, cyto 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015233)
HIX0015233
HIT000484699
(
EU178113
)
(Protein fosB; G0/G1 switch regulatory protein 3;)
genome : 45,971,253 - 45,978,436 (7,184)
query : 1 - 3,526 (3,526/3,526)
4 exons
identity = 0.998
5'(0.997;1.000;1.000;0.997)3'
coverage = 1.000
InterPro :
IPR000837 : AP-1 transcription factor
GO :
0003677 : Molecular Function : DNA binding
0005634 : Cellular Component : nucleus
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto_nucl 17.5, cyto 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015233)
HIX0015233
HIT000484700
(
EU178114
)
(Protein fosB; G0/G1 switch regulatory protein 3;)
genome : 45,971,253 - 45,978,436 (7,184)
query : 1 - 3,517 (3,517/3,517)
5 exons
identity = 0.998
5'(0.997;1.000;1.000;1.000;0.997)3'
coverage = 1.000
InterPro :
IPR000837 : AP-1 transcription factor
IPR004827 : Basic-leucine zipper domain
GO :
0003677 : Molecular Function : DNA binding
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
0043565 : Molecular Function : sequence-specific DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31.5, cyto_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015233)
HIX0015233
HIT000484701
(
EU178115
)
(Protein fosB isoform 2.)
genome : 45,971,253 - 45,978,436 (7,184)
query : 1 - 3,346 (3,346/3,346)
2 exons
identity = 0.998
5'(0.997;0.998)3'
coverage = 1.000
InterPro :
IPR000837 : AP-1 transcription factor
GO :
0003677 : Molecular Function : DNA binding
0005634 : Cellular Component : nucleus
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17.5, cyto_nucl 16, cyto 9.5, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015233)
HIX0015233
HIT000484702
(
EU178116
)
(Protein fosB isoform 2.)
genome : 45,971,253 - 45,978,436 (7,184)
query : 1 - 3,205 (3,205/3,205)
3 exons
identity = 0.998
5'(0.997;1.000;0.997)3'
coverage = 1.000
InterPro :
IPR000837 : AP-1 transcription factor
GO :
0003677 : Molecular Function : DNA binding
0005634 : Cellular Component : nucleus
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16, nucl 14.5, cyto 12.5, extr 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015233)
HIX0015233
HIT000515287 (
ENST00000417353
)
(Protein fosB isoform 2.)
genome : 45,971,253 - 45,978,436 (7,184)
query : 1 - 3,667 (3,667/3,667)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27, cyto_nucl 17.5, cyto 4
Ensembl
cDNA-genome Alignment