bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0002028
HIT000564961 (
ENST00000460015
)
(Conserved hypothetical protein.)
genome : 46,520,806 - 46,574,137 (53,332)
query : 1 - 558 (558/558)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 27, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002028)
HIX0002028
HIT000547281 (
ENST00000449347
)
(Endothelial PAS domain-containing protein 1; EPAS-1; Basic-helix-loop-helix-PAS protein MOP2; Class E basic helix-loop-helix protein 73; bHLHe73; HIF-1-alpha-like factor; HLF; Hypoxia-inducible factor 2-alpha; HIF-2-alpha; HIF2-alpha; Member of PAS protein 2; PAS domain-containing protein 2;)
genome : 46,523,747 - 46,588,229 (64,483)
query : 1 - 1,067 (1,067/1,067)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14, cyto_nucl 11.5, extr 8, cyto 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002028)
HIX0002028
HIT000198408 (
NM_001430
)
(Endothelial PAS domain-containing protein 1; EPAS-1; Basic-helix-loop-helix-PAS protein MOP2; Class E basic helix-loop-helix protein 73; bHLHe73; HIF-1-alpha-like factor; HLF; Hypoxia-inducible factor 2-alpha; HIF-2-alpha; HIF2-alpha; Member of PAS protein 2; PAS domain-containing protein 2;)
genome : 46,524,541 - 46,613,842 (89,302)
query : 1 - 5,166 (5,166/5,184)
16 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 18, cyto 10.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002028)
HIX0002028
HIT000109014 (
ENST00000263734
)
(Endothelial PAS domain-containing protein 1; EPAS-1; Basic-helix-loop-helix-PAS protein MOP2; Class E basic helix-loop-helix protein 73; bHLHe73; HIF-1-alpha-like factor; HLF; Hypoxia-inducible factor 2-alpha; HIF-2-alpha; HIF2-alpha; Member of PAS protein 2; PAS domain-containing protein 2;)
genome : 46,524,541 - 46,613,836 (89,296)
query : 1 - 5,160 (5,160/5,160)
16 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 18, cyto 10.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002028)
HIX0002028
HIT000053632
(
BC051338
)
Representative transcript
(Endothelial PAS domain-containing protein 1; EPAS-1; Basic-helix-loop-helix-PAS protein MOP2; Class E basic helix-loop-helix protein 73; bHLHe73; HIF-1-alpha-like factor; HLF; Hypoxia-inducible factor 2-alpha; HIF-2-alpha; HIF2-alpha; Member of PAS protein 2; PAS domain-containing protein 2;)
genome : 46,524,736 - 46,613,836 (89,101)
query : 1 - 4,963 (4,963/5,011)
16 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.999)3'
coverage = 1.000
InterPro :
IPR000014 : PAS domain
IPR001067 : Nuclear translocator
IPR001610 : PAC motif
IPR011598 : Myc-type, basic helix-loop-helix (bHLH) domain
IPR013767 : PAS fold
IPR014887 : HIF-1 alpha, transactivation domain, C-terminal
IPR021537 : Hypoxia-inducible factor, alpha subunit
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0004871 : Molecular Function : signal transducer activity
0005634 : Cellular Component : nucleus
0005667 : Cellular Component : transcription factor complex
0005737 : Cellular Component : cytoplasm
0006355 : Biological Process : regulation of transcription, DNA-templated
0007165 : Biological Process : signal transduction
0046983 : Molecular Function : protein dimerization activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 18, cyto 10.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002028)
Ortholog candidate ( ->
Evola
)
Gallus
sp. (Chicken) : AF129813
Rattus
sp. (Rat) : AJ277828
Bos
sp. (Cow) : BC142229
Tetraodon
sp. (Tetraodon) : CR654981
Mus
sp. (Mouse) : D89787
Danio
sp. (Zebrafish) : DQ375242
Oryzias
sp. (Medaka) : ENSORLT00000004404
Pongo
sp. (Orangutan) : ENSPPYT00000014455
Takifugu
sp. (Fugu) : SINFRUT00000156267
Macaca
sp. (Macaque) : XM_001112980
Pan
sp. (Chimpanzee) : XM_001147219
Monodelphis
sp. (Opossum) : XM_001382147
Equus
sp. (Horse) : XM_001498442
Canis
sp. (Dog) : XM_531807
Danio
sp. (Zebrafish) : XM_690170
HIX0002028
HIT000221735
(
U81984
)
(Endothelial PAS domain-containing protein 1; EPAS-1; Basic-helix-loop-helix-PAS protein MOP2; Class E basic helix-loop-helix protein 73; bHLHe73; HIF-1-alpha-like factor; HLF; Hypoxia-inducible factor 2-alpha; HIF-2-alpha; HIF2-alpha; Member of PAS protein 2; PAS domain-containing protein 2;)
genome : 46,524,902 - 46,611,853 (86,952)
query : 1 - 2,816 (2,816/2,818)
16 exons
identity = 1.000
5'(1.000;0.995;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 0.999
InterPro :
IPR000014 : PAS domain
IPR001067 : Nuclear translocator
IPR001610 : PAC motif
IPR011598 : Myc-type, basic helix-loop-helix (bHLH) domain
IPR013767 : PAS fold
IPR014887 : HIF-1 alpha, transactivation domain, C-terminal
IPR021537 : Hypoxia-inducible factor, alpha subunit
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0004871 : Molecular Function : signal transducer activity
0005634 : Cellular Component : nucleus
0005667 : Cellular Component : transcription factor complex
0005737 : Cellular Component : cytoplasm
0006355 : Biological Process : regulation of transcription, DNA-templated
0007165 : Biological Process : signal transduction
0046983 : Molecular Function : protein dimerization activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 18, cyto 10.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002028)
HIX0002028
HIT000572481 (
ENST00000467888
)
(Endothelial PAS domain-containing protein 1; EPAS-1; Basic-helix-loop-helix-PAS protein MOP2; Class E basic helix-loop-helix protein 73; bHLHe73; HIF-1-alpha-like factor; HLF; Hypoxia-inducible factor 2-alpha; HIF-2-alpha; HIF2-alpha; Member of PAS protein 2; PAS domain-containing protein 2;)
genome : 46,524,903 - 46,574,676 (49,774)
query : 1 - 665 (665/665)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto_nucl 12, extr 7, cyto 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002028)
HIX0002028
HIT000220221
(
U51626
)
(Endothelial PAS domain-containing protein 1; EPAS-1; Basic-helix-loop-helix-PAS protein MOP2; Class E basic helix-loop-helix protein 73; bHLHe73; HIF-1-alpha-like factor; HLF; Hypoxia-inducible factor 2-alpha; HIF-2-alpha; HIF2-alpha; Member of PAS protein 2; PAS domain-containing protein 2;)
genome : 46,525,019 - 46,611,884 (86,866)
query : 1 - 2,729 (2,729/2,730)
16 exons
identity = 0.995
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.992;0.976;1.000;
0.989;0.983)3'
coverage = 1.000
InterPro :
IPR000014 : PAS domain
IPR001067 : Nuclear translocator
IPR001610 : PAC motif
IPR011598 : Myc-type, basic helix-loop-helix (bHLH) domain
IPR013767 : PAS fold
IPR014887 : HIF-1 alpha, transactivation domain, C-terminal
IPR021537 : Hypoxia-inducible factor, alpha subunit
GO :
0003700 : Molecular Function : sequence-specific DNA binding transcription factor activity
0004871 : Molecular Function : signal transducer activity
0005634 : Cellular Component : nucleus
0005667 : Cellular Component : transcription factor complex
0005737 : Cellular Component : cytoplasm
0006355 : Biological Process : regulation of transcription, DNA-templated
0007165 : Biological Process : signal transduction
0046983 : Molecular Function : protein dimerization activity
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 18, cyto 10.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002028)
HIX0204006
HIT000091286
(
BC026731
)
Representative transcript
(Hypothetical protein.)
genome : 46,526,664 - 46,527,039 (376)
query : 1 - 376 (376/376)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, cyto 7, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0204006)
HIX0030410
HIT000264347
(
BC070392
)
Representative transcript
(Hypothetical short protein.)
genome : 46,558,419 - 46,559,413 (995)
query : 1 - 995 (995/1,024)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, cyto_nucl 7.5, cyto 7, nucl 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030410)
HIX0002028
HIT000580045 (
ENST00000475822
)
(Endothelial PAS domain-containing protein 1; EPAS-1; Basic-helix-loop-helix-PAS protein MOP2; Class E basic helix-loop-helix protein 73; bHLHe73; HIF-1-alpha-like factor; HLF; Hypoxia-inducible factor 2-alpha; HIF-2-alpha; HIF2-alpha; Member of PAS protein 2; PAS domain-containing protein 2;)
genome : 46,562,829 - 46,583,432 (20,604)
query : 1 - 551 (551/551)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17.5, cyto_nucl 15, cyto 9.5, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002028)
HIX0002028
HIT000567996 (
ENST00000463191
)
(Endothelial PAS domain-containing protein 1; EPAS-1; Basic-helix-loop-helix-PAS protein MOP2; Class E basic helix-loop-helix protein 73; bHLHe73; HIF-1-alpha-like factor; HLF; Hypoxia-inducible factor 2-alpha; HIF-2-alpha; HIF2-alpha; Member of PAS protein 2; PAS domain-containing protein 2;)
genome : 46,583,254 - 46,588,190 (4,937)
query : 1 - 559 (559/559)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 10.5, extr 8, cyto_nucl 7.5, mito 7, nucl 3.5,
E.R._mito 3.5, mito_pero 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002028)
HIX0002027
HIT000006846
(
AK023572
)
Representative transcript
(Conserved hypothetical protein.)
genome : 46,600,575 - 46,602,317 (1,743)
query : 1 - 1,742 (1,742/1,742)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, extr 4, nucl 4, pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002027)
HIX0002028
HIT000587568 (
ENST00000483692
)
(Endothelial PAS domain-containing protein 1; EPAS-1; Basic-helix-loop-helix-PAS protein MOP2; Class E basic helix-loop-helix protein 73; bHLHe73; HIF-1-alpha-like factor; HLF; Hypoxia-inducible factor 2-alpha; HIF-2-alpha; HIF2-alpha; Member of PAS protein 2; PAS domain-containing protein 2;)
genome : 46,602,775 - 46,605,841 (3,067)
query : 1 - 657 (657/657)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22.5, cyto_nucl 17, cyto 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002028)
HIX0002028
HIT000043718
(
AK123845
)
(Endothelial PAS domain-containing protein 1; EPAS-1; Basic-helix-loop-helix-PAS protein MOP2; Class E basic helix-loop-helix protein 73; bHLHe73; HIF-1-alpha-like factor; HLF; Hypoxia-inducible factor 2-alpha; HIF-2-alpha; HIF2-alpha; Member of PAS protein 2; PAS domain-containing protein 2;)
genome : 46,606,839 - 46,613,835 (6,997)
query : 1 - 3,622 (3,622/3,622)
5 exons
identity = 0.999
5'(0.999;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR014887 : HIF-1 alpha, transactivation domain, C-terminal
IPR021537 : Hypoxia-inducible factor, alpha subunit
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12.5, cyto_nucl 11.8333, cyto 10, mito 6,
cyto_pero 5.83333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002028)
HIX0002028
HIT000571117 (
ENST00000466465
)
(Endothelial PAS domain-containing protein 1; EPAS-1; Basic-helix-loop-helix-PAS protein MOP2; Class E basic helix-loop-helix protein 73; bHLHe73; HIF-1-alpha-like factor; HLF; Hypoxia-inducible factor 2-alpha; HIF-2-alpha; HIF2-alpha; Member of PAS protein 2; PAS domain-containing protein 2;)
genome : 46,606,839 - 46,613,835 (6,997)
query : 1 - 3,622 (3,622/3,622)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12.5, cyto_nucl 11.8333, cyto 10, mito 6,
cyto_pero 5.83333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002028)
HIX0002028
HIT000570021 (
ENST00000465318
)
(Endothelial PAS domain-containing protein 1; EPAS-1; Basic-helix-loop-helix-PAS protein MOP2; Class E basic helix-loop-helix protein 73; bHLHe73; HIF-1-alpha-like factor; HLF; Hypoxia-inducible factor 2-alpha; HIF-2-alpha; HIF2-alpha; Member of PAS protein 2; PAS domain-containing protein 2;)
genome : 46,608,316 - 46,609,643 (1,328)
query : 1 - 741 (741/741)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 12, nucl 5.5, mito 4, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002028)
HIX0002028
HIT000573093 (
ENST00000468530
)
(Endothelial PAS domain-containing protein 1; EPAS-1; Basic-helix-loop-helix-PAS protein MOP2; Class E basic helix-loop-helix protein 73; bHLHe73; HIF-1-alpha-like factor; HLF; Hypoxia-inducible factor 2-alpha; HIF-2-alpha; HIF2-alpha; Member of PAS protein 2; PAS domain-containing protein 2;)
genome : 46,608,774 - 46,611,689 (2,916)
query : 1 - 452 (452/452)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 10.5, cyto_nucl 10.5, cyto 9.5, extr 6, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002028)
HIX0002028
HIT000064289
(
AF052094
)
(Hypothetical protein.)
genome : 46,612,594 - 46,613,836 (1,243)
query : 1 - 1,243 (1,243/1,264)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 10.5, cyto_nucl 9.5, extr 8, mito 7, cyto 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002028)
HIX0002028
HIT000037368
(
BC015869
)
(Hypothetical protein.)
genome : 46,612,894 - 46,613,839 (946)
query : 1 - 946 (946/975)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 10.5, cyto_nucl 9.5, extr 8, mito 7, cyto 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002028)
HIX0162343
HIT000516349 (
ENST00000418415
)
(Hypothetical protein.)
genome : 46,619,436 - 46,621,306 (1,871)
query : 1 - 570 (570/570)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 13, extr 11, cyto_nucl 2.83333, nucl 2.5,
cyto_pero 2.33333, cyto 2, golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0162343)
HIX0030255
HIT000092351
(
BC031304
)
Representative transcript
(Hypothetical short protein.)
genome : 46,656,329 - 46,668,972 (12,644)
query : 1 - 741 (741/756)
4 exons
identity = 0.996
5'(0.967;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030255)
HIX0030255
HIT000547535 (
ENST00000449601
)
(Conserved hypothetical protein.)
genome : 46,656,329 - 46,668,972 (12,644)
query : 1 - 741 (741/741)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030255)
HIX0030255
HIT000530175 (
ENST00000432241
)
(Transmembrane protein 247 family protein.)
genome : 46,656,334 - 46,711,563 (55,230)
query : 1 - 545 (545/545)
5 exons
identity = 0.991
5'(1.000;1.000;0.981;0.980;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 21, extr 11
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030255)
HIX0030255
HIT000514400 (
ENST00000416466
)
(Conserved hypothetical protein.)
genome : 46,657,315 - 46,668,972 (11,658)
query : 1 - 474 (474/474)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030255)
HIX0030255
HIT000513330 (
ENST00000415396
)
(Conserved hypothetical protein.)
genome : 46,663,612 - 46,668,971 (5,360)
query : 1 - 678 (678/678)
4 exons
identity = 0.983
5'(0.987;0.942;0.962;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030255)
HIX0030255
HIT000561153 (
NM_001145051
)
(Transmembrane protein 247 family protein.)
genome : 46,706,704 - 46,711,564 (4,861)
query : 1 - 680 (680/681)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 0.999
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 23, E.R. 4, cyto 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030255)
HIX0030255
HIT000532365 (
ENST00000434431
)
(Transmembrane protein 247 family protein.)
genome : 46,706,725 - 46,711,564 (4,840)
query : 1 - 659 (659/659)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 23, E.R. 4, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030255)
HIX0002029
HIT000623513 (
ENST00000524249
)
(Hypothetical protein.)
genome : 46,717,889 - 46,769,317 (51,429)
query : 1 - 857 (857/857)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, nucl 6.5, cyto_nucl 6.33333, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002029)
HIX0204257
HIT000617109 (
ENST00000517716
)
(Conserved hypothetical protein.)
genome : 46,726,870 - 46,728,417 (1,548)
query : 1 - 399 (399/399)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17, extr 7, cyto_nucl 5, nucl 4, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0204257)
HIX0002029
HIT000051242
(
BC034808
)
Representative transcript
(V-type proton ATPase subunit E 2; V-ATPase subunit E 2; Vacuolar proton pump subunit E 2;)
genome : 46,738,987 - 46,747,096 (8,110)
query : 1 - 1,978 (1,978/2,025)
2 exons
identity = 0.998
3'(0.999;0.998)5'
coverage = 1.000
InterPro :
IPR002842 : ATPase, V1/A1 complex, subunit E
GO :
0015991 : Biological Process : ATP hydrolysis coupled proton transport
0033178 : Cellular Component : proton-transporting two-sector ATPase complex, catalytic domain
0046961 : Molecular Function : proton-transporting ATPase activity, rotational mechanism
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 24.5, cyto_pero 14.5, pero 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002029)
HIX0002029
HIT000211852 (
NM_080653
)
(ATPase, V1/A1 complex, subunit E family protein.)
genome : 46,738,987 - 46,747,096 (8,110)
query : 1 - 1,978 (1,978/2,025)
2 exons
identity = 0.999
3'(1.000;0.999)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 24.5, cyto_pero 14.5, pero 3.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002029)
HIX0002029
HIT000034122
(
BC008981
)
(V-type proton ATPase subunit E 2; V-ATPase subunit E 2; Vacuolar proton pump subunit E 2;)
genome : 46,738,987 - 46,746,357 (7,371)
query : 1 - 1,239 (1,239/1,255)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
InterPro :
IPR002842 : ATPase, V1/A1 complex, subunit E
GO :
0015991 : Biological Process : ATP hydrolysis coupled proton transport
0033178 : Cellular Component : proton-transporting two-sector ATPase complex, catalytic domain
0046961 : Molecular Function : proton-transporting ATPase activity, rotational mechanism
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 24.5, cyto_pero 14.5, pero 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002029)
HIX0002029
HIT000117348 (
ENST00000306448
)
(ATPase, V1/A1 complex, subunit E family protein.)
genome : 46,738,986 - 46,747,096 (8,111)
query : 1 - 1,979 (1,979/1,979)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 24.5, cyto_pero 14.5, pero 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002029)
HIX0002029
HIT000061241
(
AB074759
)
(V-type proton ATPase subunit E 2; V-ATPase subunit E 2; Vacuolar proton pump subunit E 2;)
genome : 46,738,988 - 46,746,357 (7,370)
query : 1 - 1,238 (1,238/1,238)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
InterPro :
IPR002842 : ATPase, V1/A1 complex, subunit E
GO :
0015991 : Biological Process : ATP hydrolysis coupled proton transport
0033178 : Cellular Component : proton-transporting two-sector ATPase complex, catalytic domain
0046961 : Molecular Function : proton-transporting ATPase activity, rotational mechanism
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 24.5, cyto_pero 14.5, pero 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002029)
HIX0002029
HIT000014661
(
AK058055
)
(V-type proton ATPase subunit E 2; V-ATPase subunit E 2; Vacuolar proton pump subunit E 2;)
genome : 46,738,988 - 46,746,130 (7,143)
query : 1 - 1,011 (1,011/1,011)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
InterPro :
IPR002842 : ATPase, V1/A1 complex, subunit E
GO :
0015991 : Biological Process : ATP hydrolysis coupled proton transport
0033178 : Cellular Component : proton-transporting two-sector ATPase complex, catalytic domain
0046961 : Molecular Function : proton-transporting ATPase activity, rotational mechanism
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 24.5, cyto_pero 14.5, pero 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002029)
HIX0002029
HIT000621880 (
ENST00000522587
)
(ATPase, V1/A1 complex, subunit E family protein.)
genome : 46,739,006 - 46,769,696 (30,691)
query : 1 - 1,559 (1,559/1,559)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 24.5, cyto_pero 14.5, pero 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002029)
HIX0002029
HIT000067164
(
AF086285
)
(Non-protein coding transcript.)
genome : 46,755,026 - 46,768,722 (13,697)
query : 1 - 563 (563/572)
4 exons
identity = 0.996
3'(1.000;1.000;1.000;0.990)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002029)
HIX0002029
HIT000623452 (
ENST00000524188
)
(Non-protein coding transcript.)
genome : 46,755,017 - 46,768,722 (13,706)
query : 1 - 572 (572/572)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002029)
HIX0002029
HIT000043624
(
AK123751
)
(Conserved hypothetical protein.)
genome : 46,761,138 - 46,769,141 (8,004)
query : 1 - 2,635 (2,635/2,635)
3 exons
identity = 0.999
3'(0.999;1.000;0.998)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, nucl 6.5, cyto_nucl 6.33333, cyto 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002029)
HIX0002029
HIT000605393 (
ENST00000505245
)
(Conserved hypothetical protein.)
genome : 46,761,439 - 46,769,141 (7,703)
query : 1 - 2,334 (2,334/2,334)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, nucl 6.5, cyto_nucl 6.33333, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002029)
HIX0002029
HIT000621519 (
ENST00000522219
)
(Hypothetical short protein.)
genome : 46,762,952 - 46,768,728 (5,777)
query : 1 - 609 (609/609)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto_nucl 7.5, cyto 7, nucl 4, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002029)
HIX0002030
HIT000569904 (
ENST00000465198
)
(Rho-related GTP-binding protein RhoQ precursor.)
genome : 46,768,945 - 46,803,388 (34,444)
query : 1 - 318 (318/318)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, cyto 7, cyto_nucl 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002030)
HIX0002030
HIT000204030 (
NM_012249
)
(Rho-related GTP-binding protein RhoQ; Ras-like protein TC10; Ras-like protein family member 7A; Precursor;)
genome : 46,769,867 - 46,811,827 (41,961)
query : 1 - 4,542 (4,542/4,542)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, cyto_nucl 11.5, extr 9
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002030)
HIX0002030
HIT000104888 (
ENST00000238738
)
(Rho-related GTP-binding protein RhoQ; Ras-like protein TC10; Ras-like protein family member 7A; Precursor;)
genome : 46,769,867 - 46,810,260 (40,394)
query : 1 - 2,975 (2,975/2,975)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, cyto_nucl 11.5, extr 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002030)
HIX0002030
HIT000020184
(
AK095329
)
(Rho-related GTP-binding protein RhoQ precursor.)
genome : 46,769,875 - 46,809,420 (39,546)
query : 1 - 3,141 (3,141/3,141)
5 exons
identity = 0.993
5'(1.000;0.950;0.998;1.000;0.993)3'
coverage = 1.000
InterPro :
IPR001806 : Small GTPase superfamily
IPR003578 : Small GTPase superfamily, Rho type
GO :
0005525 : Molecular Function : GTP binding
0005622 : Cellular Component : intracellular
0007264 : Biological Process : small GTPase mediated signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, extr 12, cyto_nucl 11.3333, cyto 6,
extr_plas 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002030)
HIX0002030
HIT000530117 (
ENST00000432183
)
(Rho-related GTP-binding protein RhoQ precursor.)
genome : 46,769,875 - 46,803,795 (33,921)
query : 1 - 714 (714/714)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11, cyto_nucl 11, extr 8, cyto 7, mito 4,
extr_plas 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002030)
HIX0002030
HIT000259517
(
BC056154
)
Representative transcript
(Rho-related GTP-binding protein RhoQ; Ras-like protein TC10; Ras-like protein family member 7A; Precursor;)
genome : 46,770,074 - 46,809,421 (39,348)
query : 1 - 1,929 (1,929/1,947)
5 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR001806 : Small GTPase superfamily
IPR003578 : Small GTPase superfamily, Rho type
IPR005225 : Small GTP-binding protein domain
GO :
0005525 : Molecular Function : GTP binding
0005622 : Cellular Component : intracellular
0007264 : Biological Process : small GTPase mediated signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, cyto_nucl 11.5, extr 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002030)
Ortholog candidate ( ->
Evola
)
Rattus
sp. (Rat) : AB031482
Mus
sp. (Mouse) : BC056363
Bos
sp. (Cow) : ENSBTAT00000018269
Danio
sp. (Zebrafish) : ENSDART00000038415
Equus
sp. (Horse) : ENSECAT00000007015
Gallus
sp. (Chicken) : ENSGALT00000038323
Monodelphis
sp. (Opossum) : ENSMODT00000001174
Oryzias
sp. (Medaka) : ENSORLT00000001760
Pongo
sp. (Orangutan) : ENSPPYT00000014452
Tetraodon
sp. (Tetraodon) : GSTENT00031722001
Takifugu
sp. (Fugu) : SINFRUT00000137980
Macaca
sp. (Macaque) : XM_001109631
Pan
sp. (Chimpanzee) : XM_001143008
Canis
sp. (Dog) : XM_531808
HIX0002030
HIT000264359
(
BC070485
)
(Rho-related GTP-binding protein RhoQ; Ras-like protein TC10; Ras-like protein family member 7A; Precursor;)
genome : 46,770,089 - 46,808,853 (38,765)
query : 1 - 1,346 (1,346/1,360)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001806 : Small GTPase superfamily
IPR003578 : Small GTPase superfamily, Rho type
IPR005225 : Small GTP-binding protein domain
GO :
0005525 : Molecular Function : GTP binding
0005622 : Cellular Component : intracellular
0007264 : Biological Process : small GTPase mediated signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, cyto_nucl 11.5, extr 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002030)
HIX0002030
HIT000261853
(
BC065291
)
(Rho-related GTP-binding protein RhoQ; Ras-like protein TC10; Ras-like protein family member 7A; Precursor;)
genome : 46,770,097 - 46,809,421 (39,325)
query : 1 - 1,904 (1,904/1,922)
5 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR001806 : Small GTPase superfamily
IPR003578 : Small GTPase superfamily, Rho type
IPR005225 : Small GTP-binding protein domain
GO :
0005525 : Molecular Function : GTP binding
0005622 : Cellular Component : intracellular
0007264 : Biological Process : small GTPase mediated signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, cyto_nucl 11.5, extr 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002030)
HIX0002030
HIT000334780
(
BC093805
)
(Rho-related GTP-binding protein RhoQ; Ras-like protein TC10; Ras-like protein family member 7A; Precursor;)
genome : 46,770,153 - 46,808,245 (38,093)
query : 1 - 674 (674/674)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001806 : Small GTPase superfamily
IPR003578 : Small GTPase superfamily, Rho type
IPR005225 : Small GTP-binding protein domain
GO :
0005525 : Molecular Function : GTP binding
0005622 : Cellular Component : intracellular
0007264 : Biological Process : small GTPase mediated signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, cyto_nucl 11.5, extr 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002030)
HIX0002030
HIT000386390
(
BC101806
)
(Rho-related GTP-binding protein RhoQ; Ras-like protein TC10; Ras-like protein family member 7A; Precursor;)
genome : 46,770,153 - 46,808,243 (38,091)
query : 1 - 672 (672/672)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001806 : Small GTPase superfamily
IPR003578 : Small GTPase superfamily, Rho type
IPR005225 : Small GTP-binding protein domain
GO :
0005525 : Molecular Function : GTP binding
0005622 : Cellular Component : intracellular
0007264 : Biological Process : small GTPase mediated signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, cyto_nucl 11.5, extr 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002030)
HIX0002030
HIT000080913
(
AF498976
)
(Rho-related GTP-binding protein RhoQ; Ras-like protein TC10; Ras-like protein family member 7A; Precursor;)
genome : 46,770,160 - 46,808,222 (38,063)
query : 1 - 642 (642/642)
5 exons
identity = 0.997
5'(0.988;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001806 : Small GTPase superfamily
IPR003578 : Small GTPase superfamily, Rho type
IPR005225 : Small GTP-binding protein domain
GO :
0005525 : Molecular Function : GTP binding
0005622 : Cellular Component : intracellular
0007264 : Biological Process : small GTPase mediated signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, extr 9, cyto_plas 9, cyto_golg 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002030)
HIX0002030
HIT000195426
(
M31470
)
(Rho-related GTP-binding protein RhoQ; Ras-like protein TC10; Ras-like protein family member 7A; Precursor;)
genome : 46,770,160 - 46,808,222 (38,063)
query : 1 - 642 (642/642)
5 exons
identity = 0.997
5'(0.988;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001806 : Small GTPase superfamily
IPR003578 : Small GTPase superfamily, Rho type
IPR005225 : Small GTP-binding protein domain
GO :
0005525 : Molecular Function : GTP binding
0005622 : Cellular Component : intracellular
0007264 : Biological Process : small GTPase mediated signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, extr 9, cyto_plas 9, cyto_golg 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002030)
HIX0002030
HIT000669095_01 (
ENST00000555758
)
(Rho-related GTP-binding protein RhoQ precursor.)
genome : 46,770,186 - 46,808,174 (37,989)
query : 1 - 570 (570/579)
5 exons
identity = 0.982
5'(0.986;0.966;0.970;0.990;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 10, extr 8, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002030)
HIX0002030
HIT000593073 (
ENST00000489471
)
(Rho-related GTP-binding protein RhoQ precursor.)
genome : 46,770,288 - 46,808,409 (38,122)
query : 1 - 869 (869/869)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14, nucl 13.5, cyto 13.5, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002030)
HIX0002030
HIT000586378 (
ENST00000482449
)
(Rho-related GTP-binding protein RhoQ precursor.)
genome : 46,770,539 - 46,803,795 (33,257)
query : 1 - 674 (674/674)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, mito 12, cyto_nucl 10
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002030)
HIX0002030
HIT000577760 (
ENST00000473428
)
(Cdc42 homolog; Precursor;)
genome : 46,770,906 - 46,808,457 (37,552)
query : 1 - 757 (757/757)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, cyto 5, cyto_nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002030)
HIX0030265
HIT000093007
(
BC033251
)
Representative transcript
(Conserved hypothetical protein.)
genome : 46,775,079 - 46,777,379 (2,301)
query : 1 - 2,301 (2,301/2,318)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, cyto_nucl 5.33333, cyto 4.5, nucl 4,
cyto_pero 3.16667
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030265)
HIX0029950
HIT000099004
(
BC048424
)
Representative transcript
(Hypothetical short protein.)
genome : 46,795,398 - 46,807,377 (11,980)
query : 1 - 1,516 (1,516/1,533)
2 exons
identity = 0.999
3'(1.000;0.995)5'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, cyto 7, cyto_nucl 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0029950)
HIX0029950
HIT000095660
(
BC039392
)
(Hypothetical short protein.)
genome : 46,795,397 - 46,807,349 (11,953)
query : 1 - 1,489 (1,489/1,503)
2 exons
identity = 0.999
3'(0.999;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, cyto 7, cyto_nucl 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0029950)
HIX0029950
HIT000606101 (
ENST00000506009
)
(Conserved hypothetical protein.)
genome : 46,795,395 - 46,807,377 (11,983)
query : 1 - 1,519 (1,519/1,519)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, cyto 7, cyto_nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0029950)
HIX0002030
HIT000597769 (
ENST00000494370
)
(Rho-related GTP-binding protein RhoQ precursor.)
genome : 46,803,267 - 46,804,264 (998)
query : 1 - 689 (689/689)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 14, extr 10, cyto 5.5, cyto_nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002030)
HIX0002030
HIT000593051 (
ENST00000489448
)
(Conserved hypothetical protein.)
genome : 46,807,423 - 46,808,185 (763)
query : 1 - 560 (560/560)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, nucl 3.5, mito 3, cyto_nucl 3, lyso 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002030)
HIX0002031
HIT000112082 (
ENST00000281382
)
(Phosphatidylinositol-glycan biosynthesis class F protein; PIG-F; GPI11 homolog;)
genome : 46,808,076 - 46,844,258 (36,183)
query : 1 - 1,372 (1,372/1,372)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 26, extr 2, E.R. 2, lyso 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002031)
HIX0002031
HIT000199530 (
NM_002643
)
(Phosphatidylinositol-glycan biosynthesis class F protein; PIG-F; GPI11 homolog;)
genome : 46,808,413 - 46,844,251 (35,839)
query : 1 - 1,028 (1,028/1,057)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.7.8.1
KEGG pathway :
00440 : Phosphonate and phosphinate metabolism (11)
00564 : Glycerophospholipid metabolism (49)
00565 : Ether lipid metabolism (23)
01100 : Metabolic pathways (1346)
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 26, extr 2, E.R. 2, lyso 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002031)
HIX0002031
HIT000214772 (
NM_173074
)
(Phosphatidylinositol-glycan biosynthesis class F protein isoform 2.)
genome : 46,808,413 - 46,844,251 (35,839)
query : 1 - 1,133 (1,133/1,162)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.7.8.1
KEGG pathway :
00440 : Phosphonate and phosphinate metabolism (11)
00564 : Glycerophospholipid metabolism (49)
00565 : Ether lipid metabolism (23)
01100 : Metabolic pathways (1346)
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 24, extr 3, lyso 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002031)
HIX0002031
HIT000040750
(
BC029408
)
(Phosphatidylinositol-glycan biosynthesis class F protein; PIG-F; GPI11 homolog;)
genome : 46,808,413 - 46,844,204 (35,792)
query : 1 - 981 (981/1,010)
6 exons
identity = 0.999
3'(0.997;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR009580 : GPI biosynthesis protein Pig-F
GO :
0005789 : Cellular Component : endoplasmic reticulum membrane
0006506 : Biological Process : GPI anchor biosynthetic process
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 26, extr 2, E.R. 2, lyso 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002031)
HIX0002031
HIT000039272
(
BC021725
)
Representative transcript
(Phosphatidylinositol-glycan biosynthesis class F protein isoform 2.)
genome : 46,808,424 - 46,844,190 (35,767)
query : 2 - 1,062 (1,061/1,077)
7 exons
identity = 0.998
3'(1.000;1.000;1.000;0.991;1.000;1.000;0.988)5'
coverage = 0.999
EC number :
EC 2.7.8.1
KEGG pathway :
00440 : Phosphonate and phosphinate metabolism (11)
00564 : Glycerophospholipid metabolism (49)
00565 : Ether lipid metabolism (23)
01100 : Metabolic pathways (1346)
InterPro :
IPR009580 : GPI biosynthesis protein Pig-F
GO :
0005789 : Cellular Component : endoplasmic reticulum membrane
0006506 : Biological Process : GPI anchor biosynthetic process
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 24, extr 3, lyso 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002031)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK132796
Danio
sp. (Zebrafish) : BC065590
Bos
sp. (Cow) : BC111281
Gallus
sp. (Chicken) : BX931772
Macaca
sp. (Macaque) : ENSMMUT00000043559
Pongo
sp. (Orangutan) : ENSPPYT00000014451
Pan
sp. (Chimpanzee) : ENSPTRT00000022131
Takifugu
sp. (Fugu) : SINFRUT00000164079
Rattus
sp. (Rat) : XM_001059147
Monodelphis
sp. (Opossum) : XM_001382146
Equus
sp. (Horse) : XM_001498796
Canis
sp. (Dog) : XM_531809
HIX0002031
HIT000117355 (
ENST00000306465
)
(Phosphatidylinositol-glycan biosynthesis class F protein isoform 2.)
genome : 46,808,424 - 46,844,190 (35,767)
query : 1 - 1,061 (1,061/1,061)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.7.8.1
KEGG pathway :
00440 : Phosphonate and phosphinate metabolism (11)
00564 : Glycerophospholipid metabolism (49)
00565 : Ether lipid metabolism (23)
01100 : Metabolic pathways (1346)
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 24, extr 3, lyso 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002031)
HIX0002031
HIT000518098 (
ENST00000420164
)
(Phosphatidylinositol-glycan biosynthesis class F protein; PIG-F; GPI11 homolog;)
genome : 46,808,424 - 46,839,413 (30,990)
query : 1 - 586 (586/586)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14, cyto 9, cyto_nucl 8, extr 4, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002031)
HIX0002031
HIT000586702 (
ENST00000482786
)
(Phosphatidylinositol-glycan biosynthesis class F protein; PIG-F; GPI11 homolog;)
genome : 46,808,424 - 46,815,761 (7,338)
query : 1 - 855 (855/855)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 24, cyto_mito 5, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002031)
HIX0002031
HIT000100501
(
D13435
)
(Phosphatidylinositol-glycan biosynthesis class F protein; PIG-F; GPI11 homolog;)
genome : 46,808,427 - 46,844,154 (35,728)
query : 1 - 917 (917/917)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR009580 : GPI biosynthesis protein Pig-F
GO :
0005789 : Cellular Component : endoplasmic reticulum membrane
0006506 : Biological Process : GPI anchor biosynthetic process
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 26, extr 2, E.R. 2, lyso 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002031)
HIX0002031
HIT000423905
(
AK291108
)
(Phosphatidylinositol-glycan biosynthesis class F protein; PIG-F; GPI11 homolog;)
genome : 46,808,462 - 46,844,205 (35,744)
query : 2 - 934 (933/934)
6 exons
identity = 0.999
3'(1.000;1.000;1.000;0.989;1.000;1.000)5'
coverage = 0.999
InterPro :
IPR009580 : GPI biosynthesis protein Pig-F
GO :
0005789 : Cellular Component : endoplasmic reticulum membrane
0006506 : Biological Process : GPI anchor biosynthetic process
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 26, extr 2, E.R. 2, lyso 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002031)
HIX0002031
HIT000510651 (
ENST00000412717
)
(Phosphatidylinositol-glycan biosynthesis class F protein; PIG-F; GPI11 homolog;)
genome : 46,808,555 - 46,844,194 (35,640)
query : 1 - 737 (737/737)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002031)
HIX0002031
HIT000267850
(
CR457000
)
(Phosphatidylinositol-glycan biosynthesis class F protein; PIG-F; GPI11 homolog;)
genome : 46,808,617 - 46,842,303 (33,687)
query : 1 - 660 (660/660)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR009580 : GPI biosynthesis protein Pig-F
GO :
0005789 : Cellular Component : endoplasmic reticulum membrane
0006506 : Biological Process : GPI anchor biosynthetic process
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 26, extr 2, E.R. 2, lyso 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002031)
HIX0002031
HIT000618543_01 (
ENST00000519180
)
(Phosphatidylinositol-glycan biosynthesis class F protein; PIG-F; GPI11 homolog;)
genome : 46,808,622 - 46,842,303 (33,682)
query : 1 - 653 (653/653)
5 exons
identity = 0.960
3'(0.982;0.899;0.974;0.957;0.974)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 21, extr 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002031)
HIX0002031
HIT000599281 (
ENST00000495933
)
(Phosphatidylinositol-glycan biosynthesis class F protein; PIG-F;)
genome : 46,839,367 - 46,844,169 (4,803)
query : 1 - 3,454 (3,454/3,454)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002031)
HIX0002031
HIT000579250 (
ENST00000474980
)
(Conserved hypothetical protein.)
genome : 46,842,157 - 46,844,176 (2,020)
query : 1 - 619 (619/619)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto_nucl 16, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002031)
HIX0002032
HIT000590199 (
ENST00000486447
)
(Cysteine-rich PDZ-binding protein.)
genome : 46,843,555 - 46,852,192 (8,638)
query : 1 - 1,724 (1,724/1,724)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto 6.5, cyto_nucl 6.5, nucl 3.5, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002032)
HIX0002032
HIT000104900 (
ENST00000238892
)
(Cysteine-rich PDZ-binding protein; Cysteine-rich interactor of PDZ three; Cysteine-rich interactor of PDZ3;)
genome : 46,844,290 - 46,852,881 (8,592)
query : 1 - 1,953 (1,953/1,953)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002032)
HIX0002032
HIT000204576 (
NM_014171
)
(Cysteine-rich PDZ-binding protein; Cysteine-rich interactor of PDZ three; Cysteine-rich interactor of PDZ3;)
genome : 46,844,325 - 46,852,881 (8,557)
query : 1 - 1,918 (1,918/1,918)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, nucl 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002032)
HIX0002032
HIT000424095
(
AK291298
)
(Cysteine-rich PDZ-binding protein; Cysteine-rich interactor of PDZ three; Cysteine-rich interactor of PDZ3;)
genome : 46,844,327 - 46,851,571 (7,245)
query : 1 - 606 (606/606)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR019367 : PDZ-binding protein, CRIPT
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002032)
HIX0002032
HIT000002089
(
AF161488
)
(Cysteine-rich PDZ-binding protein; Cysteine-rich interactor of PDZ three; Cysteine-rich interactor of PDZ3;)
genome : 46,844,336 - 46,852,109 (7,774)
query : 2 - 1,126 (1,125/1,155)
5 exons
identity = 0.983
5'(1.000;1.000;1.000;1.000;0.977)3'
coverage = 0.997
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002032)
HIX0002032
HIT000038388
(
BC018653
)
Representative transcript
(Cysteine-rich PDZ-binding protein; Cysteine-rich interactor of PDZ three; Cysteine-rich interactor of PDZ3;)
genome : 46,844,351 - 46,852,186 (7,836)
query : 5 - 1,200 (1,196/1,229)
5 exons
identity = 0.997
5'(1.000;1.000;1.000;1.000;0.997)3'
coverage = 0.997
InterPro :
IPR019367 : PDZ-binding protein, CRIPT
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002032)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB172164
Gallus
sp. (Chicken) : AJ720168
Mus
sp. (Mouse) : AK004828
Rattus
sp. (Rat) : BC058146
Danio
sp. (Zebrafish) : BC092953
Bos
sp. (Cow) : BC102887
Tetraodon
sp. (Tetraodon) : CR661761
Equus
sp. (Horse) : ENSECAT00000012751
Pongo
sp. (Orangutan) : ENSPPYT00000014450
Takifugu
sp. (Fugu) : SINFRUT00000164081
Monodelphis
sp. (Opossum) : XM_001375558
Pan
sp. (Chimpanzee) : XM_515452
Canis
sp. (Dog) : XM_846811
HIX0002032
HIT000032963
(
BC006980
)
(Cysteine-rich PDZ-binding protein; Cysteine-rich interactor of PDZ three; Cysteine-rich interactor of PDZ3;)
genome : 46,844,354 - 46,852,110 (7,757)
query : 1 - 1,118 (1,118/1,147)
5 exons
identity = 0.997
5'(1.000;1.000;1.000;1.000;0.996)3'
coverage = 1.000
InterPro :
IPR019367 : PDZ-binding protein, CRIPT
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002032)
HIX0002032
HIT000086712
(
BC006979
)
(Cysteine-rich PDZ-binding protein; Cysteine-rich interactor of PDZ three; Cysteine-rich interactor of PDZ3;)
genome : 46,844,355 - 46,852,109 (7,755)
query : 1 - 1,115 (1,115/1,145)
5 exons
identity = 0.997
5'(1.000;1.000;0.982;1.000;0.998)3'
coverage = 0.998
InterPro :
IPR019367 : PDZ-binding protein, CRIPT
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002032)
HIX0021184
HIT000006538
(
AK023264
)
Representative transcript
(Conserved hypothetical protein.)
genome : 46,853,600 - 46,857,062 (3,463)
query : 1 - 3,460 (3,460/3,460)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021184)
HIX0024055
HIT000044122
(
AK124249
)
Representative transcript
(Conserved hypothetical protein.)
genome : 46,873,571 - 46,876,309 (2,739)
query : 4 - 2,741 (2,738/2,763)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 0.999
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 11, extr 10, cyto_nucl 10, nucl 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024055)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : ENSMMUT00000007576
Pongo
sp. (Orangutan) : ENSPPYT00000014449
Pan
sp. (Chimpanzee) : ENSPTRT00000058937
HIX0024134
HIT000047361
(
AK127488
)
Representative transcript
(Conserved hypothetical protein.)
genome : 46,878,783 - 46,883,125 (4,343)
query : 1 - 4,343 (4,343/4,343)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto 9, extr_plas 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024134)
HIX0024022
HIT000043069
(
AK123196
)
Representative transcript
(Hypothetical protein.)
genome : 46,896,009 - 46,897,917 (1,909)
query : 1 - 1,909 (1,909/1,909)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12.5, extr 11, cyto_nucl 11, cyto 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024022)
Ortholog candidate ( ->
Evola
)
Pan
sp. (Chimpanzee) : XM_001143162
HIX0002033
HIT000422991
(
AK290194
)
(Suppressor of cytokine signaling 5; SOCS-5; Cytokine-inducible SH2 protein 6; CIS-6; Cytokine-inducible SH2-containing protein 5;)
genome : 46,926,085 - 46,987,529 (61,445)
query : 1 - 2,038 (2,038/2,038)
2 exons
identity = 0.999
5'(1.000;0.999)3'
coverage = 1.000
InterPro :
IPR000980 : SH2 domain
IPR001496 : SOCS protein, C-terminal
IPR022252 : SOCS4/SOCS5 domain
IPR028413 : Suppressor of cytokine signalling
IPR028420 : Suppressor of cytokine signalling 5
GO :
0005515 : Molecular Function : protein binding
0007173 : Biological Process : epidermal growth factor receptor signaling pathway
0007259 : Biological Process : JAK-STAT cascade
0032436 : Biological Process : positive regulation of proteasomal ubiquitin-dependent protein catabolic process
0035556 : Biological Process : intracellular signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto_nucl 16.5, cyto 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002033)
HIX0002033
HIT000491420
(
AK296796
)
(Suppressor of cytokine signaling 5; SOCS-5; Cytokine-inducible SH2 protein 6; CIS-6; Cytokine-inducible SH2-containing protein 5;)
genome : 46,926,088 - 46,987,391 (61,304)
query : 1 - 1,844 (1,844/1,844)
2 exons
identity = 0.999
5'(1.000;0.999)3'
coverage = 1.000
InterPro :
IPR000980 : SH2 domain
IPR001496 : SOCS protein, C-terminal
IPR022252 : SOCS4/SOCS5 domain
IPR028413 : Suppressor of cytokine signalling
IPR028420 : Suppressor of cytokine signalling 5
GO :
0005515 : Molecular Function : protein binding
0007173 : Biological Process : epidermal growth factor receptor signaling pathway
0007259 : Biological Process : JAK-STAT cascade
0032436 : Biological Process : positive regulation of proteasomal ubiquitin-dependent protein catabolic process
0035556 : Biological Process : intracellular signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24, cyto 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002033)
HIX0002033
HIT000117367 (
ENST00000306503
)
(Suppressor of cytokine signaling 5; SOCS-5; Cytokine-inducible SH2 protein 6; CIS-6; Cytokine-inducible SH2-containing protein 5;)
genome : 46,926,091 - 46,990,268 (64,178)
query : 1 - 4,771 (4,771/4,771)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto_nucl 16.5, cyto 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002033)
HIX0002033
HIT000000396
(
AB014571
)
Representative transcript
(Suppressor of cytokine signaling 5; SOCS-5; Cytokine-inducible SH2 protein 6; CIS-6; Cytokine-inducible SH2-containing protein 5;)
genome : 46,926,091 - 46,989,920 (63,830)
query : 1 - 4,423 (4,423/4,423)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto_nucl 16.5, cyto 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002033)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK048342
Bos
sp. (Cow) : BC114096
Danio
sp. (Zebrafish) : EF195762
Oryzias
sp. (Medaka) : EF544582
Pongo
sp. (Orangutan) : ENSPPYT00000014447
Rattus
sp. (Rat) : ENSRNOT00000020337
Tetraodon
sp. (Tetraodon) : GSTENT00031723001
Takifugu
sp. (Fugu) : SINFRUT00000170603
Monodelphis
sp. (Opossum) : XM_001375537
Equus
sp. (Horse) : XM_001498720
Pan
sp. (Chimpanzee) : XM_515453
Canis
sp. (Dog) : XM_531810
HIX0002033
HIT000204465 (
NM_014011
)
(Suppressor of cytokine signaling 5; SOCS-5; Cytokine-inducible SH2 protein 6; CIS-6; Cytokine-inducible SH2-containing protein 5;)
genome : 46,926,099 - 46,989,927 (63,829)
query : 1 - 4,422 (4,422/4,422)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto_nucl 16.5, cyto 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002033)
HIX0002033
HIT000025492
(
AL136896
)
(Suppressor of cytokine signaling 5; SOCS-5; Cytokine-inducible SH2 protein 6; CIS-6; Cytokine-inducible SH2-containing protein 5;)
genome : 46,926,099 - 46,989,805 (63,707)
query : 1 - 4,300 (4,300/4,333)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000980 : SH2 domain
IPR001496 : SOCS protein, C-terminal
IPR022252 : SOCS4/SOCS5 domain
IPR028413 : Suppressor of cytokine signalling
IPR028420 : Suppressor of cytokine signalling 5
GO :
0005515 : Molecular Function : protein binding
0007173 : Biological Process : epidermal growth factor receptor signaling pathway
0007259 : Biological Process : JAK-STAT cascade
0032436 : Biological Process : positive regulation of proteasomal ubiquitin-dependent protein catabolic process
0035556 : Biological Process : intracellular signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto_nucl 16.5, cyto 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002033)
HIX0002033
HIT000051086
(
BC032862
)
(Suppressor of cytokine signaling 5; SOCS-5; Cytokine-inducible SH2 protein 6; CIS-6; Cytokine-inducible SH2-containing protein 5;)
genome : 46,926,326 - 46,988,751 (62,426)
query : 6 - 3,347 (3,342/3,364)
2 exons
identity = 0.993
5'(0.935;0.998)3'
coverage = 0.998
InterPro :
IPR000980 : SH2 domain
IPR001496 : SOCS protein, C-terminal
IPR022252 : SOCS4/SOCS5 domain
IPR028413 : Suppressor of cytokine signalling
IPR028420 : Suppressor of cytokine signalling 5
GO :
0005515 : Molecular Function : protein binding
0007173 : Biological Process : epidermal growth factor receptor signaling pathway
0007259 : Biological Process : JAK-STAT cascade
0032436 : Biological Process : positive regulation of proteasomal ubiquitin-dependent protein catabolic process
0035556 : Biological Process : intracellular signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto_nucl 16.5, cyto 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002033)
HIX0002033
HIT000478260 (
ENST00000394861
)
(Suppressor of cytokine signaling 5; SOCS-5; Cytokine-inducible SH2 protein 6; CIS-6; Cytokine-inducible SH2-containing protein 5;)
genome : 46,926,326 - 46,989,452 (63,127)
query : 1 - 4,058 (4,058/4,058)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto_nucl 16.5, cyto 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002033)
HIX0002033
HIT000212981 (
NM_144949
)
(Suppressor of cytokine signaling 5; SOCS-5; Cytokine-inducible SH2 protein 6; CIS-6; Cytokine-inducible SH2-containing protein 5;)
genome : 46,926,349 - 46,989,927 (63,579)
query : 1 - 4,510 (4,510/4,510)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto_nucl 16.5, cyto 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002033)
HIX0002033
HIT000065975
(
AF073958
)
(Suppressor of cytokine signaling 5; SOCS-5; Cytokine-inducible SH2 protein 6; CIS-6; Cytokine-inducible SH2-containing protein 5;)
genome : 46,926,349 - 46,989,443 (63,095)
query : 1 - 4,026 (4,026/4,050)
2 exons
identity = 0.999
5'(1.000;0.999)3'
coverage = 1.000
InterPro :
IPR000980 : SH2 domain
IPR001496 : SOCS protein, C-terminal
IPR022252 : SOCS4/SOCS5 domain
IPR028413 : Suppressor of cytokine signalling
IPR028420 : Suppressor of cytokine signalling 5
GO :
0005515 : Molecular Function : protein binding
0007173 : Biological Process : epidermal growth factor receptor signaling pathway
0007259 : Biological Process : JAK-STAT cascade
0032436 : Biological Process : positive regulation of proteasomal ubiquitin-dependent protein catabolic process
0035556 : Biological Process : intracellular signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto_nucl 16.5, cyto 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002033)
HIX0002034
HIT000007214
(
AK023940
)
Representative transcript
(Conserved hypothetical protein.)
genome : 47,004,924 - 47,007,384 (2,461)
query : 1 - 2,463 (2,463/2,465)
1 exon
identity = 0.998
3'(0.998)5'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11, extr 8, cysk 5, mito 4, extr_plas 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002034)
HIX0002034
HIT000681821 (
ENST00000568862
)
(Conserved hypothetical protein.)
genome : 47,004,922 - 47,007,384 (2,463)
query : 1 - 2,463 (2,463/2,463)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11, extr 8, cysk 5, mito 4, extr_plas 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002034)
HIX0030404
HIT000659236 (
NR_034099
)
(Conserved hypothetical protein.)
genome : 47,043,807 - 47,049,799 (5,993)
query : 1 - 1,043 (1,043/1,058)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12.5, cyto_nucl 12, extr 11, cyto 8.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030404)
HIX0030404
HIT000334480
(
BC092505
)
(Conserved hypothetical protein.)
genome : 47,043,807 - 47,046,582 (2,776)
query : 1 - 1,573 (1,573/1,588)
3 exons
identity = 0.998
5'(1.000;1.000;0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, cyto 10
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030404)
HIX0030404
HIT000583381 (
ENST00000479311
)
(Conserved hypothetical protein.)
genome : 47,043,807 - 47,046,582 (2,776)
query : 1 - 1,573 (1,573/1,588)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21, cyto_nucl 13, extr 4, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030404)
HIX0030404
HIT000260665
(
BC062774
)
Representative transcript
(Conserved hypothetical protein.)
genome : 47,043,822 - 47,049,787 (5,966)
query : 5 - 1,020 (1,016/1,051)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 0.994
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12.5, cyto_nucl 12, extr 11, cyto 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030404)
Ortholog candidate ( ->
Evola
)
Pan
sp. (Chimpanzee) : XM_001148313
HIX0030404
HIT000507936 (
ENST00000409912
)
(Conserved hypothetical protein.)
genome : 47,043,822 - 47,049,794 (5,973)
query : 1 - 1,023 (1,023/1,023)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12.5, cyto_nucl 12, extr 11, cyto 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030404)
HIX0030404
HIT000507549 (
ENST00000409518
)
(Conserved hypothetical protein.)
genome : 47,043,827 - 47,049,796 (5,970)
query : 1 - 834 (834/834)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto_nucl 11.5, nucl 10.5, cyto 9.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030404)
HIX0030404
HIT000520228 (
ENST00000422294
)
(Conserved hypothetical protein.)
genome : 47,043,836 - 47,085,349 (41,514)
query : 1 - 409 (409/409)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 28, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030404)
HIX0030404
HIT000089334
(
BC017573
)
(Conserved hypothetical protein.)
genome : 47,055,003 - 47,086,146 (31,144)
query : 12 - 1,222 (1,211/1,247)
3 exons
identity = 0.995
5'(1.000;1.000;0.993)3'
coverage = 0.991
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, cyto 8.5, cyto_nucl 7.33333,
cyto_pero 5.16667
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030404)
HIX0030404
HIT000594491 (
ENST00000490950
)
(Conserved hypothetical protein.)
genome : 47,055,003 - 47,086,146 (31,144)
query : 1 - 1,211 (1,211/1,211)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, cyto 8.5, cyto_nucl 7.33333,
cyto_pero 5.16667
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030404)
HIX0030404
HIT000562630 (
NR_024452
)
(Conserved hypothetical protein.)
genome : 47,055,003 - 47,086,145 (31,143)
query : 1 - 1,210 (1,210/1,210)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, cyto 8.5, cyto_nucl 7.33333,
cyto_pero 5.16667
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030404)
HIX0030404
HIT000017364
(
AK092497
)
(Conserved hypothetical protein.)
genome : 47,073,015 - 47,086,145 (13,131)
query : 1 - 2,157 (2,157/2,157)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, cyto 8, cyto_nucl 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030404)
HIX0030404
HIT000572721 (
ENST00000468141
)
(Conserved hypothetical protein.)
genome : 47,073,015 - 47,086,145 (13,131)
query : 1 - 2,157 (2,157/2,157)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, cyto 8, cyto_nucl 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030404)
HIX0163204
HIT000551870 (
ENST00000453936
)
(Conserved hypothetical protein.)
genome : 47,079,159 - 47,080,635 (1,477)
query : 1 - 652 (652/652)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 23, mito 3, cyto_nucl 3, nucl 2.5, cyto 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0163204)
HIX0030404
HIT000598812 (
ENST00000495449
)
(Conserved hypothetical protein.)
genome : 47,082,827 - 47,085,718 (2,892)
query : 1 - 803 (803/803)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, cyto 8, cyto_nucl 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030404)
HIX0002037
HIT000013413
(
AK056799
)
(Multiple coagulation factor deficiency protein 2; Neural stem cell-derived neuronal survival protein; Precursor;)
genome : 47,126,414 - 47,135,817 (9,404)
query : 1 - 1,834 (1,834/1,834)
2 exons
identity = 0.998
3'(1.000;0.998)5'
coverage = 1.000
InterPro :
IPR018247 : EF-Hand 1, calcium-binding site
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 15, cyto_nucl 10.5, plas 6, nucl 4, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002037)
HIX0002037
HIT000527695 (
ENST00000429761
)
(Multiple coagulation factor deficiency protein 2; Neural stem cell-derived neuronal survival protein; Precursor;)
genome : 47,126,414 - 47,135,817 (9,404)
query : 1 - 1,835 (1,835/1,835)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 15, cyto_nucl 10.5, plas 6, nucl 4, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002037)
HIX0002037
HIT000028773
(
AL833900
)
(Multiple coagulation factor deficiency protein 2; Neural stem cell-derived neuronal survival protein; Precursor;)
genome : 47,129,016 - 47,142,942 (13,927)
query : 1 - 4,114 (4,114/4,259)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR002048 : EF-hand domain
IPR011992 : EF-hand domain pair
IPR018247 : EF-Hand 1, calcium-binding site
GO :
0005509 : Molecular Function : calcium ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18, extr 10, pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002037)
HIX0002037
HIT000654778 (
NM_001171508
)
(Multiple coagulation factor deficiency protein 2; Neural stem cell-derived neuronal survival protein; Precursor;)
genome : 47,129,009 - 47,168,994 (39,986)
query : 1 - 4,324 (4,324/4,334)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18, extr 10, pero 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002037)
HIX0002037
HIT000654781 (
NM_001171511
)
(Multiple coagulation factor deficiency protein 2 isoform C.)
genome : 47,129,009 - 47,168,994 (39,986)
query : 1 - 4,169 (4,169/4,179)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 23, cyto_pero 3.66667, cyto_nucl 3.16667, cyto 3,
extr 2, pero 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002037)
HIX0002037
HIT000654777 (
NM_001171507
)
(Multiple coagulation factor deficiency protein 2; Neural stem cell-derived neuronal survival protein; Precursor;)
genome : 47,129,009 - 47,143,251 (14,243)
query : 1 - 4,172 (4,172/4,182)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18, extr 10, pero 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002037)
HIX0002037
HIT000654780 (
NM_001171510
)
(Multiple coagulation factor deficiency protein 2 isoform B.)
genome : 47,129,009 - 47,143,251 (14,243)
query : 1 - 4,017 (4,017/4,027)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, extr 9, nucl 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002037)
HIX0002037
HIT000212753 (
NM_139279
)
(Multiple coagulation factor deficiency protein 2; Neural stem cell-derived neuronal survival protein; Precursor;)
genome : 47,129,009 - 47,143,007 (13,999)
query : 1 - 4,186 (4,186/4,196)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18, extr 10, pero 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002037)
HIX0002037
HIT000654776 (
NM_001171506
)
(Multiple coagulation factor deficiency protein 2; Neural stem cell-derived neuronal survival protein; Precursor;)
genome : 47,129,009 - 47,143,007 (13,999)
query : 1 - 4,280 (4,280/4,290)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18, extr 10, pero 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002037)
HIX0002037
HIT000654779 (
NM_001171509
)
(Multiple coagulation factor deficiency protein 2 isoform B.)
genome : 47,129,009 - 47,143,007 (13,999)
query : 1 - 4,031 (4,031/4,041)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, extr 9, nucl 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002037)
HIX0002037
HIT000306570
(
CR749562
)
(Multiple coagulation factor deficiency protein 2; Neural stem cell-derived neuronal survival protein; Precursor;)
genome : 47,129,016 - 47,142,949 (13,934)
query : 2 - 3,967 (3,966/3,983)
3 exons
identity = 0.998
3'(0.998;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR002048 : EF-hand domain
IPR011992 : EF-hand domain pair
IPR018247 : EF-Hand 1, calcium-binding site
GO :
0005509 : Molecular Function : calcium ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, extr 9, nucl 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002037)
HIX0002037
HIT000052380
(
BC040357
)
(Multiple coagulation factor deficiency protein 2; Neural stem cell-derived neuronal survival protein; Precursor;)
genome : 47,129,016 - 47,142,933 (13,918)
query : 1 - 4,105 (4,105/4,121)
4 exons
identity = 0.999
3'(0.999;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR002048 : EF-hand domain
IPR011992 : EF-hand domain pair
IPR018247 : EF-Hand 1, calcium-binding site
GO :
0005509 : Molecular Function : calcium ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18, extr 10, pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002037)
HIX0002037
HIT000094969
(
BC037845
)
(Multiple coagulation factor deficiency protein 2; Neural stem cell-derived neuronal survival protein; Precursor;)
genome : 47,129,016 - 47,142,900 (13,885)
query : 6 - 3,922 (3,917/3,937)
3 exons
identity = 0.998
3'(0.998;1.000;0.974)5'
coverage = 0.999
InterPro :
IPR002048 : EF-hand domain
IPR011992 : EF-hand domain pair
IPR018247 : EF-Hand 1, calcium-binding site
GO :
0005509 : Molecular Function : calcium ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, extr 9, nucl 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002037)
HIX0002037
HIT000542695 (
ENST00000444761
)
(Multiple coagulation factor deficiency protein 2 isoform C.)
genome : 47,129,009 - 47,168,994 (39,986)
query : 1 - 4,169 (4,169/4,169)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 23, cyto_pero 3.66667, cyto_nucl 3.16667, cyto 3,
extr 2, pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002037)
HIX0002037
HIT000507825 (
ENST00000409800
)
(Multiple coagulation factor deficiency protein 2 isoform B.)
genome : 47,129,013 - 47,143,193 (14,181)
query : 1 - 3,955 (3,955/3,955)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, extr 9, nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002037)
HIX0002037
HIT000122076 (
ENST00000319466
)
(Multiple coagulation factor deficiency protein 2; Neural stem cell-derived neuronal survival protein; Precursor;)
genome : 47,129,013 - 47,143,007 (13,995)
query : 1 - 4,182 (4,182/4,182)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18, extr 10, pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002037)
HIX0002037
HIT000507937 (
ENST00000409913
)
(Multiple coagulation factor deficiency protein 2; Neural stem cell-derived neuronal survival protein; Precursor;)
genome : 47,129,013 - 47,142,955 (13,943)
query : 1 - 3,975 (3,975/3,975)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, extr 9, nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002037)
HIX0002037
HIT000507140 (
ENST00000409105
)
(Multiple coagulation factor deficiency protein 2; Neural stem cell-derived neuronal survival protein; Precursor;)
genome : 47,129,013 - 47,142,919 (13,907)
query : 1 - 4,210 (4,210/4,210)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18, extr 10, pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002037)
HIX0002037
HIT000081441
(
AF537214
)
(Multiple coagulation factor deficiency protein 2; Neural stem cell-derived neuronal survival protein; Precursor;)
genome : 47,129,017 - 47,142,944 (13,928)
query : 1 - 4,115 (4,115/4,115)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR002048 : EF-hand domain
IPR011992 : EF-hand domain pair
IPR018247 : EF-Hand 1, calcium-binding site
GO :
0005509 : Molecular Function : calcium ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18, extr 10, pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002037)
HIX0002037
HIT000194876
(
M23161
)
(Multiple coagulation factor deficiency protein 2; Neural stem cell-derived neuronal survival protein; Precursor;)
genome : 47,129,017 - 47,135,078 (6,062)
query : 1 - 3,816 (3,816/3,816)
2 exons
identity = 0.969
3'(0.968;1.000)5'
coverage = 1.000
InterPro :
IPR002048 : EF-hand domain
IPR011992 : EF-hand domain pair
IPR018247 : EF-Hand 1, calcium-binding site
GO :
0005509 : Molecular Function : calcium ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, extr 10, nucl 5, extr_plas 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002037)
HIX0094162
HIT000019861
(
AK095006
)
Representative transcript
(Conserved hypothetical protein.)
genome : 47,129,017 - 47,131,901 (2,885)
query : 1 - 2,885 (2,885/2,885)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12.5, cyto_nucl 11.5, extr 10, cyto 9.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0094162)
HIX0002037
HIT000488513
(
AK293889
)
(Multiple coagulation factor deficiency protein 2 isoform C.)
genome : 47,131,968 - 47,168,878 (36,911)
query : 1 - 1,094 (1,094/1,094)
3 exons
identity = 0.999
3'(1.000;0.994;1.000)5'
coverage = 1.000
InterPro :
IPR002048 : EF-hand domain
IPR011992 : EF-hand domain pair
IPR018247 : EF-Hand 1, calcium-binding site
GO :
0005509 : Molecular Function : calcium ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 21, cyto 5, cyto_pero 4.66667, cyto_nucl 4.16667,
extr 2, pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002037)
HIX0002037
HIT000597228 (
ENST00000493804
)
(Multiple coagulation factor deficiency protein 2; Neural stem cell-derived neuronal survival protein; Precursor;)
genome : 47,131,994 - 47,142,928 (10,935)
query : 1 - 807 (807/807)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13.5, mito 12, cyto 11, nucl 6, E.R._mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002037)
HIX0002037
HIT000424924
(
AK292127
)
Representative transcript
(Multiple coagulation factor deficiency protein 2; Neural stem cell-derived neuronal survival protein; Precursor;)
genome : 47,132,097 - 47,168,871 (36,775)
query : 1 - 1,113 (1,113/1,113)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR002048 : EF-hand domain
IPR011992 : EF-hand domain pair
IPR018247 : EF-Hand 1, calcium-binding site
GO :
0005509 : Molecular Function : calcium ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18, extr 10, pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002037)
Ortholog candidate ( ->
Evola
)
Rattus
sp. (Rat) : AF475282
Gallus
sp. (Chicken) : AJ720519
Mus
sp. (Mouse) : AK141599
Danio
sp. (Zebrafish) : BC083471
Bos
sp. (Cow) : BC149602
Tetraodon
sp. (Tetraodon) : CR636649
Pongo
sp. (Orangutan) : CR858179
Macaca
sp. (Macaque) : XM_001109911
Monodelphis
sp. (Opossum) : XM_001382145
Equus
sp. (Horse) : XM_001498157
Pan
sp. (Chimpanzee) : XM_515454
Canis
sp. (Dog) : XM_531811
HIX0002037
HIT000507241 (
ENST00000409207
)
(Multiple coagulation factor deficiency protein 2; Neural stem cell-derived neuronal survival protein; Precursor;)
genome : 47,132,097 - 47,168,871 (36,775)
query : 1 - 1,113 (1,113/1,113)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18, extr 10, pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002037)
HIX0002037
HIT000080407
(
AF475284
)
(Multiple coagulation factor deficiency protein 2; Neural stem cell-derived neuronal survival protein; Precursor;)
genome : 47,132,307 - 47,142,910 (10,604)
query : 1 - 794 (794/821)
4 exons
identity = 0.977
3'(0.967;1.000;1.000;0.923)5'
coverage = 1.000
InterPro :
IPR002048 : EF-hand domain
IPR011992 : EF-hand domain pair
IPR018247 : EF-Hand 1, calcium-binding site
GO :
0005509 : Molecular Function : calcium ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18, extr 10, pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002037)
HIX0002037
HIT000575327 (
ENST00000470873
)
(Multiple coagulation factor deficiency protein 2; Neural stem cell-derived neuronal survival protein; Precursor;)
genome : 47,132,384 - 47,168,912 (36,529)
query : 1 - 552 (552/552)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 27, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002037)
HIX0002037
HIT000507994 (
ENST00000409973
)
(Multiple coagulation factor deficiency protein 2; Neural stem cell-derived neuronal survival protein; Precursor;)
genome : 47,132,410 - 47,142,949 (10,540)
query : 1 - 821 (821/821)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18, extr 10, pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002037)
HIX0002037
HIT000507181 (
ENST00000409147
)
(Multiple coagulation factor deficiency protein 2 isoform C.)
genome : 47,132,507 - 47,168,994 (36,488)
query : 1 - 671 (671/671)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 23, cyto_pero 3.66667, cyto_nucl 3.16667, cyto 3,
extr 2, pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002037)
HIX0002037
HIT000507251 (
ENST00000409218
)
(Multiple coagulation factor deficiency protein 2; Neural stem cell-derived neuronal survival protein; Precursor;)
genome : 47,132,533 - 47,143,251 (10,719)
query : 1 - 648 (648/648)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18, extr 10, pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002037)
HIX0002037
HIT000510372 (
ENST00000412438
)
(Multiple coagulation factor deficiency protein 2; Neural stem cell-derived neuronal survival protein; Precursor;)
genome : 47,132,605 - 47,141,257 (8,653)
query : 1 - 588 (588/588)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18, extr 10, pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002037)
HIX0002037
HIT000532196 (
ENST00000434262
)
(Multiple coagulation factor deficiency protein 2; Neural stem cell-derived neuronal survival protein; Precursor;)
genome : 47,132,956 - 47,136,211 (3,256)
query : 1 - 376 (376/376)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, cyto 9, nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002037)
HIX0002037
HIT000581922 (
ENST00000477791
)
(Multiple coagulation factor deficiency protein 2; Neural stem cell-derived neuronal survival protein; Precursor;)
genome : 47,134,668 - 47,142,930 (8,263)
query : 1 - 665 (665/665)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 14, extr 9.5, extr_plas 7, E.R._mito 7,
mito_pero 7, mito_nucl 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002037)
HIX0002037
HIT000583299 (
ENST00000479225
)
(Multiple coagulation factor deficiency protein 2; Neural stem cell-derived neuronal survival protein; Precursor;)
genome : 47,134,839 - 47,168,853 (34,015)
query : 1 - 568 (568/568)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 15, extr 6.5, extr_plas 5.5, plas 3.5, lyso 3,
cyto 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002037)
HIX0002037
HIT000515114 (
ENST00000417180
)
(Multiple coagulation factor deficiency protein 2; Neural stem cell-derived neuronal survival protein; Precursor;)
genome : 47,135,074 - 47,141,213 (6,140)
query : 1 - 565 (565/565)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, cyto 3, mito 3, cyto_mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002037)
HIX0002037
HIT000590839 (
ENST00000487121
)
(Multiple coagulation factor deficiency protein 2; Neural stem cell-derived neuronal survival protein; Precursor;)
genome : 47,135,846 - 47,168,866 (33,021)
query : 1 - 627 (627/627)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 20, extr 9.5, extr_plas 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002037)
HIX0215063
HIT000635102 (
ENST00000536057
)
(Tetratricopeptide repeat protein 7A family protein.)
genome : 47,168,425 - 47,178,833 (10,409)
query : 1 - 697 (697/697)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 25, cyto_nucl 14.5, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215063)
HIX0214594
HIT000261960
(
BC065554
)
Representative transcript
(Tetratricopeptide repeat protein 7A.)
genome : 47,202,144 - 47,301,187 (99,044)
query : 33 - 2,188 (2,156/2,204)
17 exons
identity = 0.995
5'(0.902;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 0.985
InterPro :
IPR001440 : Tetratricopeptide TPR1
IPR011990 : Tetratricopeptide-like helical domain
IPR013026 : Tetratricopeptide repeat-containing domain
IPR019734 : Tetratricopeptide repeat
IPR026900 : Tetratricopeptide repeat protein 7A
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16, cyto_nucl 15.5, cyto 13
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214594)
HIX0214594
HIT000578616 (
ENST00000474321
)
(Conserved hypothetical protein.)
genome : 47,205,257 - 47,233,133 (27,877)
query : 1 - 622 (622/622)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 11, cyto_nucl 8, nucl 7.5, extr 6, mito_pero 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214594)
HIX0214594
HIT000094037
(
BC035708
)
(Tetratricopeptide repeat protein 7A.)
genome : 47,205,879 - 47,302,696 (96,818)
query : 12 - 3,635 (3,624/3,690)
16 exons
identity = 0.996
5'(1.000;0.987;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.993;
1.000;0.994)3'
coverage = 0.997
InterPro :
IPR001440 : Tetratricopeptide TPR1
IPR011990 : Tetratricopeptide-like helical domain
IPR013026 : Tetratricopeptide repeat-containing domain
IPR019734 : Tetratricopeptide repeat
IPR026900 : Tetratricopeptide repeat protein 7A
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 11, nucl 10, cyto 10, extr 6, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214594)
HIX0214594
HIT000595300 (
ENST00000491786
)
(Tetratricopeptide repeat protein 7A family protein.)
genome : 47,205,879 - 47,302,696 (96,818)
query : 1 - 3,615 (3,615/3,615)
16 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 11, nucl 10, cyto 10, extr 6, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214594)
HIX0214594
HIT000266003
(
BC082965
)
(Tetratricopeptide repeat protein 7A.)
genome : 47,221,370 - 47,302,460 (81,091)
query : 1 - 3,091 (3,091/3,109)
12 exons
identity = 0.995
5'(1.000;1.000;1.000;1.000;1.000;0.986;1.000;
1.000;1.000;0.993;1.000;0.991)3'
coverage = 1.000
InterPro :
IPR011990 : Tetratricopeptide-like helical domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13, extr 12, nucl 12, cyto 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214594)
HIX0214594
HIT000587926 (
ENST00000484061
)
(Tetratricopeptide-like helical domain containing protein.)
genome : 47,221,370 - 47,302,463 (81,094)
query : 1 - 3,085 (3,085/3,085)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13, extr 12, nucl 12, cyto 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214594)
HIX0214594
HIT000537985 (
ENST00000440051
)
(Tetratricopeptide-like helical domain containing protein.)
genome : 47,233,071 - 47,277,119 (44,049)
query : 1 - 641 (641/641)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15, nucl 9.5, cyto_nucl 9.5, cyto 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214594)
HIX0214594
HIT000086118
(
BC001978
)
(Tetratricopeptide repeat protein 7A family protein.)
genome : 47,233,800 - 47,302,456 (68,657)
query : 1 - 2,757 (2,757/2,781)
11 exons
identity = 0.996
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.993)3'
coverage = 1.000
InterPro :
IPR001440 : Tetratricopeptide TPR1
IPR011990 : Tetratricopeptide-like helical domain
IPR013026 : Tetratricopeptide repeat-containing domain
IPR019734 : Tetratricopeptide repeat
IPR026900 : Tetratricopeptide repeat protein 7A
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 12, cyto 10, nucl 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214594)
HIX0214594
HIT000588192 (
ENST00000484337
)
(Tetratricopeptide-like helical domain containing protein.)
genome : 47,261,294 - 47,288,095 (26,802)
query : 1 - 753 (753/753)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 22.5, cyto_nucl 14, nucl 4.5, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214594)
HIX0162433
HIT000520135 (
ENST00000422201
)
(Hypothetical short protein.)
genome : 47,262,418 - 47,267,663 (5,246)
query : 1 - 504 (504/504)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 22, cyto_nucl 6, nucl 5.5, cyto 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0162433)
HIX0214844
HIT000600238 (
ENST00000496939
)
(Conserved hypothetical protein.)
genome : 47,272,677 - 47,335,941 (63,265)
query : 1 - 565 (565/565)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito_nucl 11.1667, mito 11, nucl 10.5, cyto_nucl 10.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214844)
HIX0214594
HIT000600287 (
ENST00000496991
)
(Conserved hypothetical protein.)
genome : 47,273,454 - 47,277,966 (4,513)
query : 1 - 703 (703/703)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, extr 6, nucl 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214594)
HIX0214594
HIT000091335
(
BC027457
)
(Tetratricopeptide repeat protein 7A family protein.)
genome : 47,278,938 - 47,302,460 (23,523)
query : 1 - 1,914 (1,914/1,939)
3 exons
identity = 0.993
5'(1.000;1.000;0.992)3'
coverage = 1.000
InterPro :
IPR001440 : Tetratricopeptide TPR1
IPR011990 : Tetratricopeptide-like helical domain
IPR013026 : Tetratricopeptide repeat-containing domain
IPR019734 : Tetratricopeptide repeat
IPR026900 : Tetratricopeptide repeat protein 7A
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14.5, nucl 12.5, cyto 11.5, extr 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214594)
HIX0214844
HIT000569272 (
ENST00000464527
)
(Hypothetical short protein.)
genome : 47,292,896 - 47,335,924 (43,029)
query : 1 - 779 (779/779)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214844)
HIX0162427
HIT000519693 (
ENST00000421759
)
(Hypothetical protein.)
genome : 47,294,961 - 47,298,343 (3,383)
query : 1 - 860 (860/860)
2 exons
identity = 0.995
5'(0.995;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, cyto 5.5, cyto_nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0162427)
HIX0214844
HIT000586473 (
ENST00000482548
)
(Hypothetical short protein.)
genome : 47,295,326 - 47,335,927 (40,602)
query : 1 - 771 (771/771)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, mito 4, nucl 2, cyto 2, cyto_nucl 2,
E.R._mito 2, mito_pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214844)
HIX0214594
HIT000024674
(
AL117512
)
(Hypothetical short protein.)
genome : 47,301,184 - 47,302,456 (1,273)
query : 1 - 1,273 (1,273/1,282)
1 exon
identity = 0.998
5'(0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 23, extr 4, nucl 3.5, cyto_nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214594)
HIX0200297
HIT000543861 (
ENST00000445927
)
(Sperm-tail PG-rich repeat containing protein.)
genome : 47,314,130 - 47,382,517 (68,388)
query : 1 - 891 (891/891)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19.5, cyto_nucl 17.5, cyto 10.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200297)
HIX0200297
HIT000653855 (
NM_001163561
)
(Sperm-tail PG-rich repeat containing protein.)
genome : 47,314,130 - 47,382,517 (68,388)
query : 1 - 891 (891/891)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19.5, cyto_nucl 17.5, cyto 10.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200297)
HIX0200297
HIT000547780 (
ENST00000449846
)
(Sperm-tail PG-rich repeat containing protein.)
genome : 47,314,130 - 47,378,434 (64,305)
query : 1 - 403 (403/403)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16, cyto_nucl 13, extr 8, cyto 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200297)
HIX0204085
HIT000464996_04
(
DQ598465
)
Representative transcript
(Non-protein coding transcript.)
genome : 47,327,596 - 47,327,626 (31)
query : 1 - 31 (31/31)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0204085)
HIX0204086
HIT000464996_05
(
DQ598465
)
Representative transcript
(Non-protein coding transcript.)
genome : 47,335,301 - 47,335,331 (31)
query : 1 - 31 (31/31)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0204086)
HIX0200297
HIT000215026 (
NM_173649
)
(Conserved hypothetical protein.)
genome : 47,355,587 - 47,382,517 (26,931)
query : 1 - 2,139 (2,139/2,139)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 17, nucl 16.5, cyto 12.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200297)
HIX0200297
HIT000022345
(
AK097491
)
Representative transcript
(Conserved hypothetical protein.)
genome : 47,355,587 - 47,382,426 (26,840)
query : 1 - 2,048 (2,048/2,048)
5 exons
identity = 0.999
3'(0.999;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 17, nucl 16.5, cyto 12.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200297)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK005861
Bos
sp. (Cow) : ENSBTAT00000011372
Canis
sp. (Dog) : ENSCAFT00000004157
Equus
sp. (Horse) : ENSECAT00000018928
Pongo
sp. (Orangutan) : ENSPPYT00000014442
Takifugu
sp. (Fugu) : SINFRUT00000181693
Macaca
sp. (Macaque) : XM_001110047
Monodelphis
sp. (Opossum) : XM_001382143
Pan
sp. (Chimpanzee) : XM_515456
HIX0200297
HIT000114006 (
ENST00000294947
)
(Conserved hypothetical protein.)
genome : 47,356,014 - 47,382,426 (26,413)
query : 1 - 1,621 (1,621/1,621)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 17, nucl 16.5, cyto 12.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200297)
HIX0002039
HIT000198680 (
NM_001743
)
(EF-hand domain pair containing protein.)
genome : 47,387,221 - 47,403,740 (16,520)
query : 1 - 1,302 (1,302/1,309)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.995
EC number :
EC 2.7.11.19
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16.1667, cyto 15.5, cyto_plas 9.83333,
nucl 9.5, extr 2, mito 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002039)
HIX0002039
HIT000110867 (
ENST00000272298
)
(EF-hand domain pair containing protein.)
genome : 47,387,221 - 47,403,740 (16,520)
query : 1 - 1,302 (1,302/1,302)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16.1667, cyto 15.5, cyto_plas 9.83333,
nucl 9.5, extr 2, mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002039)
HIX0002039
HIT000037984
(
BC017385
)
Representative transcript
(Calmodulin; CaM;)
genome : 47,387,304 - 47,403,650 (16,347)
query : 5 - 1,133 (1,129/1,163)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.995
InterPro :
IPR002048 : EF-hand domain
IPR011992 : EF-hand domain pair
IPR018247 : EF-Hand 1, calcium-binding site
GO :
0005509 : Molecular Function : calcium ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16.1667, cyto 15.5, cyto_plas 9.83333,
nucl 9.5, extr 2, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002039)
HIX0002039
HIT000033790
(
BC008437
)
(Calmodulin; CaM;)
genome : 47,387,304 - 47,403,655 (16,352)
query : 2 - 1,135 (1,134/1,164)
6 exons
identity = 0.998
3'(0.998;0.993;1.000;1.000;1.000;1.000)5'
coverage = 0.999
InterPro :
IPR002048 : EF-hand domain
IPR011992 : EF-hand domain pair
IPR018247 : EF-Hand 1, calcium-binding site
GO :
0005509 : Molecular Function : calcium ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16.1667, cyto 15.5, cyto_plas 9.83333,
nucl 9.5, extr 2, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002039)
HIX0002039
HIT000038396
(
BC018677
)
(Calmodulin; CaM;)
genome : 47,387,311 - 47,403,650 (16,340)
query : 6 - 1,128 (1,123/1,161)
6 exons
identity = 0.998
3'(0.998;1.000;1.000;1.000;1.000;0.986)5'
coverage = 0.993
InterPro :
IPR002048 : EF-hand domain
IPR011992 : EF-hand domain pair
IPR018247 : EF-Hand 1, calcium-binding site
GO :
0005509 : Molecular Function : calcium ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16.1667, cyto 15.5, cyto_plas 9.83333,
nucl 9.5, extr 2, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002039)
HIX0002039
HIT000040086
(
BC026065
)
(Calmodulin; CaM;)
genome : 47,387,307 - 47,403,650 (16,344)
query : 5 - 1,130 (1,126/1,158)
6 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.996
InterPro :
IPR002048 : EF-hand domain
IPR011992 : EF-hand domain pair
IPR018247 : EF-Hand 1, calcium-binding site
GO :
0005509 : Molecular Function : calcium ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16.1667, cyto 15.5, cyto_plas 9.83333,
nucl 9.5, extr 2, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002039)
HIX0002039
HIT000031509
(
BC003354
)
(Calmodulin; CaM;)
genome : 47,387,304 - 47,403,638 (16,335)
query : 1 - 1,117 (1,117/1,134)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR002048 : EF-hand domain
IPR011992 : EF-hand domain pair
IPR018247 : EF-Hand 1, calcium-binding site
GO :
0005509 : Molecular Function : calcium ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16.1667, cyto 15.5, cyto_plas 9.83333,
nucl 9.5, extr 2, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002039)
HIX0002039
HIT000098656
(
BC047553
)
(Calmodulin.)
genome : 47,387,304 - 47,401,346 (14,043)
query : 1 - 4,494 (4,494/4,509)
5 exons
identity = 0.997
3'(0.997;1.000;1.000;1.000;0.996)5'
coverage = 1.000
EC number :
EC 2.7.11.19
InterPro :
IPR002048 : EF-hand domain
IPR011992 : EF-hand domain pair
IPR018247 : EF-Hand 1, calcium-binding site
GO :
0005509 : Molecular Function : calcium ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 14.6667, cyto_plas 10.5,
nucl 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002039)
HIX0002039
HIT000032850
(
BC006464
)
(Calmodulin; CaM;)
genome : 47,387,308 - 47,403,640 (16,333)
query : 1 - 1,115 (1,115/1,133)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR002048 : EF-hand domain
IPR011992 : EF-hand domain pair
IPR018247 : EF-Hand 1, calcium-binding site
GO :
0005509 : Molecular Function : calcium ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16.1667, cyto 15.5, cyto_plas 9.83333,
nucl 9.5, extr 2, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002039)
HIX0002039
HIT000565157 (
ENST00000460218
)
(EF-hand domain pair containing protein.)
genome : 47,387,303 - 47,401,346 (14,044)
query : 1 - 4,502 (4,502/4,502)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 14.6667, cyto_plas 10.5,
nucl 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002039)
HIX0002039
HIT000101499
(
D45887
)
(Calmodulin; CaM;)
genome : 47,387,305 - 47,403,650 (16,346)
query : 1 - 1,128 (1,128/1,128)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR002048 : EF-hand domain
IPR011992 : EF-hand domain pair
IPR018247 : EF-Hand 1, calcium-binding site
GO :
0005509 : Molecular Function : calcium ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16.1667, cyto 15.5, cyto_plas 9.83333,
nucl 9.5, extr 2, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002039)
HIX0002039
HIT000194686
(
M19311
)
(Calmodulin; CaM;)
genome : 47,387,309 - 47,403,634 (16,326)
query : 1 - 1,126 (1,126/1,126)
6 exons
identity = 0.960
3'(0.941;1.000;0.981;0.972;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR002048 : EF-hand domain
IPR011992 : EF-hand domain pair
IPR018247 : EF-Hand 1, calcium-binding site
GO :
0005509 : Molecular Function : calcium ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16.1667, cyto 15.5, cyto_plas 9.83333,
nucl 9.5, extr 2, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002039)
HIX0002039
HIT000011744
(
AK055130
)
(Calmodulin.)
genome : 47,387,309 - 47,399,810 (12,502)
query : 1 - 2,953 (2,953/2,953)
5 exons
identity = 0.996
3'(1.000;1.000;1.000;0.993;0.994)5'
coverage = 1.000
EC number :
EC 2.7.11.19
InterPro :
IPR002048 : EF-hand domain
IPR011992 : EF-hand domain pair
IPR018247 : EF-Hand 1, calcium-binding site
GO :
0005509 : Molecular Function : calcium ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 14.6667, cyto_plas 10.5,
nucl 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002039)
HIX0002039
HIT000530833 (
ENST00000432899
)
(EF-hand domain containing protein.)
genome : 47,387,311 - 47,403,639 (16,329)
query : 1 - 1,004 (1,004/1,004)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15.1667, nucl 12.5, cyto 12.5,
cyto_plas 8.16667, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002039)
HIX0002039
HIT000586458 (
ENST00000482532
)
(EF-hand domain pair containing protein.)
genome : 47,387,741 - 47,391,102 (3,362)
query : 1 - 1,891 (1,891/1,891)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 26, mito 2, cyto_nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002039)
HIX0002039
HIT000554253 (
ENST00000456319
)
(EF-hand domain pair containing protein.)
genome : 47,387,776 - 47,403,650 (15,875)
query : 1 - 703 (703/703)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 12, cyto 10.5, cyto_nucl 8, extr 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002039)
HIX0002039
HIT000507594 (
ENST00000409563
)
(EF-hand domain pair containing protein.)
genome : 47,387,878 - 47,403,650 (15,773)
query : 1 - 770 (770/770)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 13, mito 6, nucl 4.5,
mito_pero 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002039)
HIX0002039
HIT000434560
(
AK315694
)
(Calmodulin; CaM;)
genome : 47,387,915 - 47,403,650 (15,736)
query : 1 - 518 (518/518)
6 exons
identity = 0.998
3'(1.000;1.000;0.991;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR002048 : EF-hand domain
IPR011992 : EF-hand domain pair
IPR018247 : EF-Hand 1, calcium-binding site
GO :
0005509 : Molecular Function : calcium ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16.1667, cyto 15.5, cyto_plas 9.83333,
nucl 9.5, extr 2, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002039)
HIX0002039
HIT000266439
(
BT009916
)
(Calmodulin; CaM;)
genome : 47,387,917 - 47,397,904 (9,988)
query : 3 - 448 (446/450)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.991
InterPro :
IPR002048 : EF-hand domain
IPR011992 : EF-hand domain pair
IPR018247 : EF-Hand 1, calcium-binding site
GO :
0005509 : Molecular Function : calcium ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16.1667, cyto 15.5, cyto_plas 9.83333,
nucl 9.5, extr 2, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002039)
HIX0002039
HIT000268859
(
CR541990
)
(Calmodulin; CaM;)
genome : 47,387,915 - 47,397,904 (9,990)
query : 3 - 450 (448/450)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.996
InterPro :
IPR002048 : EF-hand domain
IPR011992 : EF-hand domain pair
IPR018247 : EF-Hand 1, calcium-binding site
GO :
0005509 : Molecular Function : calcium ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16.1667, cyto 15.5, cyto_plas 9.83333,
nucl 9.5, extr 2, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002039)
HIX0002039
HIT000268890
(
CR542021
)
(Calmodulin; CaM;)
genome : 47,387,918 - 47,397,904 (9,987)
query : 3 - 447 (445/447)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.996
InterPro :
IPR002048 : EF-hand domain
IPR011992 : EF-hand domain pair
IPR018247 : EF-Hand 1, calcium-binding site
GO :
0005509 : Molecular Function : calcium ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16.1667, cyto 15.5, cyto_plas 9.83333,
nucl 9.5, extr 2, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002039)
HIX0002039
HIT000588261 (
ENST00000484408
)
(EF-hand domain pair containing protein.)
genome : 47,388,862 - 47,403,592 (14,731)
query : 1 - 682 (682/682)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, cyto_nucl 15, cyto_plas 10.3333, nucl 7.5,
cysk 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002039)
HIX0002039
HIT000593335 (
ENST00000489742
)
(EF-hand domain pair containing protein.)
genome : 47,389,425 - 47,403,609 (14,185)
query : 1 - 522 (522/522)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 11, cyto 10.5, extr 10, nucl 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002039)
HIX0022251
HIT000546647 (
ENST00000448713
)
(Hypothetical short protein.)
genome : 47,419,544 - 47,572,128 (152,585)
query : 1 - 577 (577/577)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022251)
HIX0022251
HIT000539931 (
ENST00000441997
)
(Conserved hypothetical protein.)
genome : 47,419,863 - 47,572,213 (152,351)
query : 1 - 604 (604/604)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 17.3333, cyto 13, nucl 10.5,
cyto_pero 8.16667, extr 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022251)
HIX0022251
HIT000019198
(
AK094343
)
Representative transcript
(Conserved hypothetical protein.)
genome : 47,441,088 - 47,572,105 (131,018)
query : 1 - 1,892 (1,892/1,892)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13, cyto_nucl 11.5, cyto 8, extr 5, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022251)
HIX0022251
HIT000516969 (
ENST00000419035
)
(Hypothetical short protein.)
genome : 47,441,088 - 47,572,105 (131,018)
query : 1 - 1,892 (1,892/1,892)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13, cyto_nucl 11.5, cyto 8, extr 5, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022251)
HIX0161801
HIT000542295 (
ENST00000444361
)
(Hypothetical short protein.)
genome : 47,452,933 - 47,466,346 (13,414)
query : 1 - 561 (561/561)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 13.5, nucl 6.5, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0161801)
HIX0161801
HIT000524826 (
ENST00000426892
)
(Hypothetical short protein.)
genome : 47,454,056 - 47,466,364 (12,309)
query : 1 - 591 (591/591)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 13.5, nucl 6.5, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0161801)
HIX0021755
HIT000017026
(
AK092159
)
Representative transcript
(Conserved hypothetical protein.)
genome : 47,536,172 - 47,538,026 (1,855)
query : 1 - 1,855 (1,855/1,855)
1 exon
identity = 0.997
3'(0.997)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto 10.5, cyto_nucl 8, cyto_pero 7.66667
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021755)
HIX0022251
HIT000548484 (
ENST00000450550
)
(Hypothetical short protein.)
genome : 47,550,560 - 47,572,128 (21,569)
query : 1 - 393 (393/393)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022251)
HIX0022251
HIT000516473 (
ENST00000418539
)
(Conserved hypothetical protein.)
genome : 47,558,199 - 47,571,656 (13,458)
query : 1 - 13,458 (13,458/13,458)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022251)
HIX0022251
HIT000511119 (
ENST00000413185
)
(Conserved hypothetical protein.)
genome : 47,558,519 - 47,572,128 (13,610)
query : 1 - 1,046 (1,046/1,046)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, nucl 9, cyto 6, cyto_pero 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022251)
HIX0002040
HIT000505162 (
ENST00000405271
)
(Epithelial cell adhesion molecule; Ep-CAM; Adenocarcinoma-associated antigen; Cell surface glycoprotein Trop-1; Epithelial cell surface antigen; Epithelial glycoprotein; EGP; Epithelial glycoprotein 314; EGP314; hEGP314; KS 1/4 antigen; KSA; Major gastrointestinal tumor-associated protein GA733-2; Tumor-associated calcium signal transducer 1; AltName: CD_antigen=CD326; Precursor;)
genome : 47,572,297 - 47,614,039 (41,743)
query : 1 - 1,530 (1,530/1,530)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 23, nucl 3, extr 2, cyto 2, mito_nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002040)
HIX0002040
HIT000554067 (
ENST00000456133
)
(Epithelial cell adhesion molecule; Ep-CAM; Adenocarcinoma-associated antigen; Cell surface glycoprotein Trop-1; Epithelial cell surface antigen; Epithelial glycoprotein; EGP; Epithelial glycoprotein 314; EGP314; hEGP314; KS 1/4 antigen; KSA; Major gastrointestinal tumor-associated protein GA733-2; Tumor-associated calcium signal transducer 1; AltName: CD_antigen=CD326; Precursor;)
genome : 47,572,302 - 47,614,740 (42,439)
query : 1 - 1,501 (1,501/1,501)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 23, nucl 3, extr 2, cyto 2, mito_nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002040)
HIX0162160
HIT000508737 (
ENST00000410753
)
(Conserved hypothetical protein.)
genome : 47,586,644 - 47,586,916 (273)
query : 1 - 273 (273/273)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15, nucl 14, cyto 10, extr 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0162160)
HIX0002040
HIT000199254 (
NM_002354
)
(Epithelial cell adhesion molecule; Ep-CAM; Adenocarcinoma-associated antigen; Cell surface glycoprotein Trop-1; Epithelial cell surface antigen; Epithelial glycoprotein; EGP; Epithelial glycoprotein 314; EGP314; hEGP314; KS 1/4 antigen; KSA; Major gastrointestinal tumor-associated protein GA733-2; Tumor-associated calcium signal transducer 1; AltName: CD_antigen=CD326; Precursor;)
genome : 47,596,287 - 47,614,166 (17,880)
query : 1 - 1,717 (1,717/1,731)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 28, E.R. 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002040)
HIX0002040
HIT000109015 (
ENST00000263735
)
(Epithelial cell adhesion molecule; Ep-CAM; Adenocarcinoma-associated antigen; Cell surface glycoprotein Trop-1; Epithelial cell surface antigen; Epithelial glycoprotein; EGP; Epithelial glycoprotein 314; EGP314; hEGP314; KS 1/4 antigen; KSA; Major gastrointestinal tumor-associated protein GA733-2; Tumor-associated calcium signal transducer 1; AltName: CD_antigen=CD326; Precursor;)
genome : 47,596,287 - 47,614,173 (17,887)
query : 1 - 1,724 (1,724/1,724)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 28, E.R. 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002040)
HIX0002040
HIT000009859
(
AK026585
)
(Epithelial cell adhesion molecule; Ep-CAM; Adenocarcinoma-associated antigen; Cell surface glycoprotein Trop-1; Epithelial cell surface antigen; Epithelial glycoprotein; EGP; Epithelial glycoprotein 314; EGP314; hEGP314; KS 1/4 antigen; KSA; Major gastrointestinal tumor-associated protein GA733-2; Tumor-associated calcium signal transducer 1; AltName: CD_antigen=CD326; Precursor;)
genome : 47,596,450 - 47,614,158 (17,709)
query : 1 - 1,546 (1,546/1,565)
9 exons
identity = 0.999
5'(1.000;1.000;0.996;1.000;1.000;1.000;1.000;
1.000;0.998)3'
coverage = 1.000
InterPro :
IPR000716 : Thyroglobulin type-1
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 28, E.R. 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002040)
HIX0002040
HIT000036855
(
BC014785
)
(Epithelial cell adhesion molecule; Ep-CAM; Adenocarcinoma-associated antigen; Cell surface glycoprotein Trop-1; Epithelial cell surface antigen; Epithelial glycoprotein; EGP; Epithelial glycoprotein 314; EGP314; hEGP314; KS 1/4 antigen; KSA; Major gastrointestinal tumor-associated protein GA733-2; Tumor-associated calcium signal transducer 1; AltName: CD_antigen=CD326; Precursor;)
genome : 47,596,463 - 47,614,070 (17,608)
query : 1 - 1,445 (1,445/1,458)
9 exons
identity = 0.999
5'(1.000;1.000;0.996;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000716 : Thyroglobulin type-1
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 28, E.R. 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002040)
HIX0002040
HIT000195063
(
M26481
)
(Epithelial cell adhesion molecule; Ep-CAM; Adenocarcinoma-associated antigen; Cell surface glycoprotein Trop-1; Epithelial cell surface antigen; Epithelial glycoprotein; EGP; Epithelial glycoprotein 314; EGP314; hEGP314; KS 1/4 antigen; KSA; Major gastrointestinal tumor-associated protein GA733-2; Tumor-associated calcium signal transducer 1; AltName: CD_antigen=CD326; Precursor;)
genome : 47,596,467 - 47,614,159 (17,693)
query : 2 - 1,510 (1,509/1,511)
9 exons
identity = 0.985
5'(0.921;1.000;0.996;1.000;1.000;1.000;0.995;
1.000;0.998)3'
coverage = 0.999
InterPro :
IPR000716 : Thyroglobulin type-1
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 27, E.R. 2, pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002040)
HIX0002040
HIT000195473
(
M32325
)
(Epithelial cell adhesion molecule; Ep-CAM; Adenocarcinoma-associated antigen; Cell surface glycoprotein Trop-1; Epithelial cell surface antigen; Epithelial glycoprotein; EGP; Epithelial glycoprotein 314; EGP314; hEGP314; KS 1/4 antigen; KSA; Major gastrointestinal tumor-associated protein GA733-2; Tumor-associated calcium signal transducer 1; AltName: CD_antigen=CD326; Precursor;)
genome : 47,596,471 - 47,614,157 (17,687)
query : 1 - 1,504 (1,504/1,504)
9 exons
identity = 0.986
5'(0.920;1.000;0.996;1.000;1.000;1.000;0.995;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000716 : Thyroglobulin type-1
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 27, E.R. 2, pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002040)
HIX0002040
HIT000321458
(
X14758
)
(Epithelial cell adhesion molecule; Ep-CAM; Adenocarcinoma-associated antigen; Cell surface glycoprotein Trop-1; Epithelial cell surface antigen; Epithelial glycoprotein; EGP; Epithelial glycoprotein 314; EGP314; hEGP314; KS 1/4 antigen; KSA; Major gastrointestinal tumor-associated protein GA733-2; Tumor-associated calcium signal transducer 1; AltName: CD_antigen=CD326; Precursor;)
genome : 47,596,471 - 47,614,157 (17,687)
query : 1 - 1,504 (1,504/1,504)
9 exons
identity = 0.986
5'(0.920;1.000;0.996;1.000;1.000;1.000;0.995;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000716 : Thyroglobulin type-1
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 27, E.R. 2, pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002040)
HIX0002040
HIT000195488
(
M33011
)
(Epithelial cell adhesion molecule; Ep-CAM; Adenocarcinoma-associated antigen; Cell surface glycoprotein Trop-1; Epithelial cell surface antigen; Epithelial glycoprotein; EGP; Epithelial glycoprotein 314; EGP314; hEGP314; KS 1/4 antigen; KSA; Major gastrointestinal tumor-associated protein GA733-2; Tumor-associated calcium signal transducer 1; AltName: CD_antigen=CD326; Precursor;)
genome : 47,596,538 - 47,614,157 (17,620)
query : 1 - 1,457 (1,457/1,457)
9 exons
identity = 0.999
5'(1.000;1.000;0.996;1.000;1.000;1.000;1.000;
1.000;0.998)3'
coverage = 1.000
InterPro :
IPR000716 : Thyroglobulin type-1
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 28, E.R. 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002040)
HIX0002040
HIT000578970 (
ENST00000474691
)
(Epithelial cell adhesion molecule; Ep-CAM; Adenocarcinoma-associated antigen; Cell surface glycoprotein Trop-1; Epithelial cell surface antigen; Epithelial glycoprotein; EGP; Epithelial glycoprotein 314; EGP314; hEGP314; KS 1/4 antigen; KSA; Major gastrointestinal tumor-associated protein GA733-2; Tumor-associated calcium signal transducer 1; AltName: CD_antigen=CD326; Precursor;)
genome : 47,596,614 - 47,601,190 (4,577)
query : 1 - 696 (696/714)
2 exons
identity = 0.999
5'(1.000;0.998)3'
coverage = 0.975
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, extr 8, nucl 4, extr_plas 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002040)
HIX0002040
HIT000195465
(
M32306
)
Representative transcript
(Epithelial cell adhesion molecule; Ep-CAM; Adenocarcinoma-associated antigen; Cell surface glycoprotein Trop-1; Epithelial cell surface antigen; Epithelial glycoprotein; EGP; Epithelial glycoprotein 314; EGP314; hEGP314; KS 1/4 antigen; KSA; Major gastrointestinal tumor-associated protein GA733-2; Tumor-associated calcium signal transducer 1; AltName: CD_antigen=CD326; Precursor;)
genome : 47,596,634 - 47,614,157 (17,524)
query : 10 - 1,372 (1,363/1,372)
9 exons
identity = 0.997
5'(0.989;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.993)3'
coverage = 0.993
InterPro :
IPR000716 : Thyroglobulin type-1
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 28, E.R. 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002040)
Ortholog candidate ( ->
Evola
)
Gallus
sp. (Chicken) : AJ851769
Mus
sp. (Mouse) : AK133510
Rattus
sp. (Rat) : BC061787
Danio
sp. (Zebrafish) : BC092861
Bos
sp. (Cow) : BC102346
Tetraodon
sp. (Tetraodon) : CR731225
Macaca
sp. (Macaque) : DQ341470
Monodelphis
sp. (Opossum) : ENSMODT00000001308
Oryzias
sp. (Medaka) : ENSORLT00000001817
Pongo
sp. (Orangutan) : ENSPPYT00000014440
Pan
sp. (Chimpanzee) : ENSPTRT00000022141
Equus
sp. (Horse) : XM_001917795
Canis
sp. (Dog) : XM_538481
HIX0002040
HIT000517268 (
ENST00000419334
)
(Epithelial cell adhesion molecule; Ep-CAM; Adenocarcinoma-associated antigen; Cell surface glycoprotein Trop-1; Epithelial cell surface antigen; Epithelial glycoprotein; EGP; Epithelial glycoprotein 314; EGP314; hEGP314; KS 1/4 antigen; KSA; Major gastrointestinal tumor-associated protein GA733-2; Tumor-associated calcium signal transducer 1; AltName: CD_antigen=CD326; Precursor;)
genome : 47,596,634 - 47,601,132 (4,499)
query : 1 - 609 (609/609)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002040)
HIX0002040
HIT000269127
(
CR542259
)
(Epithelial cell adhesion molecule; Ep-CAM; Adenocarcinoma-associated antigen; Cell surface glycoprotein Trop-1; Epithelial cell surface antigen; Epithelial glycoprotein; EGP; Epithelial glycoprotein 314; EGP314; hEGP314; KS 1/4 antigen; KSA; Major gastrointestinal tumor-associated protein GA733-2; Tumor-associated calcium signal transducer 1; AltName: CD_antigen=CD326; Precursor;)
genome : 47,596,645 - 47,613,752 (17,108)
query : 1 - 945 (945/945)
9 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.976)3'
coverage = 1.000
InterPro :
IPR000716 : Thyroglobulin type-1
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 26, E.R. 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002040)
HIX0002040
HIT000269150
(
CR542283
)
(Epithelial cell adhesion molecule; Ep-CAM; Adenocarcinoma-associated antigen; Cell surface glycoprotein Trop-1; Epithelial cell surface antigen; Epithelial glycoprotein; EGP; Epithelial glycoprotein 314; EGP314; hEGP314; KS 1/4 antigen; KSA; Major gastrointestinal tumor-associated protein GA733-2; Tumor-associated calcium signal transducer 1; AltName: CD_antigen=CD326; Precursor;)
genome : 47,596,645 - 47,613,749 (17,105)
query : 1 - 942 (942/942)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000716 : Thyroglobulin type-1
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 28, E.R. 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002040)
HIX0002040
HIT000594279 (
ENST00000490733
)
(Epithelial cell adhesion molecule; Ep-CAM; Adenocarcinoma-associated antigen; Cell surface glycoprotein Trop-1; Epithelial cell surface antigen; Epithelial glycoprotein; EGP; Epithelial glycoprotein 314; EGP314; hEGP314; KS 1/4 antigen; KSA; Major gastrointestinal tumor-associated protein GA733-2; Tumor-associated calcium signal transducer 1; AltName: CD_antigen=CD326; Precursor;)
genome : 47,600,914 - 47,612,349 (11,436)
query : 1 - 752 (752/752)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
pero 10, cyto 7, plas 5, cyto_golg 5, golg 3,
E.R._mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002040)
HIX0118773
HIT000471041 (
ENST00000385188
)
(Non-protein coding transcript.)
genome : 47,604,814 - 47,604,909 (96)
query : 1 - 96 (96/96)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0118773)
HIX0118773
HIT000658278 (
NR_030286
)
(Non-protein coding transcript.)
genome : 47,604,814 - 47,604,909 (96)
query : 1 - 96 (96/96)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0118773)
HIX0022211
HIT000104456 (
ENST00000233146
)
(DNA mismatch repair protein Msh2; hMSH2; MutS protein homolog 2;)
genome : 47,630,108 - 47,710,367 (80,260)
query : 1 - 3,307 (3,307/3,307)
16 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022211)
HIX0022211
HIT000197297 (
NM_000251
)
(DNA mismatch repair protein Msh2; hMSH2; MutS protein homolog 2;)
genome : 47,630,206 - 47,710,367 (80,162)
query : 1 - 3,209 (3,209/3,226)
16 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022211)
HIX0022211
HIT000724184 (
NM_001258281
)
(DNA mismatch repair protein Msh2 isoform 2.)
genome : 47,630,206 - 47,710,367 (80,162)
query : 1 - 3,025 (3,025/3,042)
17 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29.5, cyto_nucl 16
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022211)
HIX0022211
HIT000499120
(
AK304496
)
Representative transcript
(DNA mismatch repair protein Msh2 isoform 2.)
genome : 47,630,206 - 47,710,360 (80,155)
query : 1 - 3,018 (3,018/3,018)
17 exons
identity = 1.000
5'(0.991;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000432 : DNA mismatch repair protein MutS, C-terminal
IPR007695 : DNA mismatch repair protein MutS-like, N-terminal
IPR007696 : DNA mismatch repair protein MutS, core
IPR007860 : DNA mismatch repair protein MutS, connector domain
IPR007861 : DNA mismatch repair protein MutS, clamp
GO :
0005524 : Molecular Function : ATP binding
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29.5, cyto_nucl 16
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022211)
HIX0022211
HIT000642600 (
ENST00000543555
)
(DNA mismatch repair protein Msh2 isoform 2.)
genome : 47,630,206 - 47,710,360 (80,155)
query : 1 - 3,018 (3,018/3,018)
17 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29.5, cyto_nucl 16
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022211)
HIX0022211
HIT000552783 (
ENST00000454849
)
(DNA mismatch repair protein Msh2 isoform 2.)
genome : 47,630,206 - 47,637,485 (7,280)
query : 1 - 560 (560/560)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21, extr 4, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022211)
HIX0022211
HIT000087913
(
BC012599
)
(DNA mismatch repair protein Msh2 isoform 2.)
genome : 47,630,258 - 47,639,582 (9,325)
query : 3 - 750 (748/778)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 0.997
InterPro :
IPR007695 : DNA mismatch repair protein MutS-like, N-terminal
IPR007860 : DNA mismatch repair protein MutS, connector domain
GO :
0005524 : Molecular Function : ATP binding
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19.5, cyto_nucl 14.5, cyto 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022211)
HIX0022211
HIT000217537
(
U04045
)
(DNA mismatch repair protein Msh2; hMSH2; MutS protein homolog 2;)
genome : 47,630,263 - 47,710,162 (79,900)
query : 1 - 2,947 (2,947/2,947)
16 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000432 : DNA mismatch repair protein MutS, C-terminal
IPR007695 : DNA mismatch repair protein MutS-like, N-terminal
IPR007696 : DNA mismatch repair protein MutS, core
IPR007860 : DNA mismatch repair protein MutS, connector domain
IPR007861 : DNA mismatch repair protein MutS, clamp
GO :
0005524 : Molecular Function : ATP binding
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022211)
HIX0022211
HIT000505484 (
ENST00000406134
)
(DNA mismatch repair protein Msh2; hMSH2; MutS protein homolog 2;)
genome : 47,630,269 - 47,740,373 (110,105)
query : 1 - 3,628 (3,628/3,628)
16 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022211)
HIX0022211
HIT000330640
(
AK222860
)
(DNA mismatch repair protein Msh2; hMSH2; MutS protein homolog 2;)
genome : 47,630,269 - 47,739,716 (109,448)
query : 1 - 2,971 (2,971/3,007)
16 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.991;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000432 : DNA mismatch repair protein MutS, C-terminal
IPR007695 : DNA mismatch repair protein MutS-like, N-terminal
IPR007696 : DNA mismatch repair protein MutS, core
IPR007860 : DNA mismatch repair protein MutS, connector domain
IPR007861 : DNA mismatch repair protein MutS, clamp
GO :
0005524 : Molecular Function : ATP binding
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022211)
HIX0022211
HIT000193920
(
L47574
)
(DNA mismatch repair protein Msh2; hMSH2; MutS protein homolog 2;)
genome : 47,630,291 - 47,710,162 (79,872)
query : 1 - 2,919 (2,919/2,919)
16 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;0.993;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000432 : DNA mismatch repair protein MutS, C-terminal
IPR007696 : DNA mismatch repair protein MutS, core
IPR007861 : DNA mismatch repair protein MutS, clamp
GO :
0005524 : Molecular Function : ATP binding
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29, cyto_nucl 17
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022211)
HIX0022211
HIT000193921
(
L47575
)
(DNA mismatch repair protein Msh2; hMSH2; MutS protein homolog 2;)
genome : 47,630,291 - 47,710,162 (79,872)
query : 1 - 2,917 (2,917/2,917)
16 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;0.985;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000432 : DNA mismatch repair protein MutS, C-terminal
IPR007695 : DNA mismatch repair protein MutS-like, N-terminal
IPR007696 : DNA mismatch repair protein MutS, core
IPR007860 : DNA mismatch repair protein MutS, connector domain
IPR007861 : DNA mismatch repair protein MutS, clamp
GO :
0005524 : Molecular Function : ATP binding
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022211)
HIX0022211
HIT000193922
(
L47576
)
(DNA mismatch repair protein Msh2; hMSH2; MutS protein homolog 2;)
genome : 47,630,291 - 47,710,162 (79,872)
query : 1 - 2,918 (2,918/2,918)
16 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.995;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000432 : DNA mismatch repair protein MutS, C-terminal
IPR007695 : DNA mismatch repair protein MutS-like, N-terminal
IPR007696 : DNA mismatch repair protein MutS, core
IPR007860 : DNA mismatch repair protein MutS, connector domain
IPR007861 : DNA mismatch repair protein MutS, clamp
GO :
0005524 : Molecular Function : ATP binding
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022211)
HIX0022211
HIT000193923
(
L47577
)
(DNA mismatch repair protein Msh2; hMSH2; MutS protein homolog 2;)
genome : 47,630,291 - 47,710,162 (79,872)
query : 1 - 2,919 (2,919/2,919)
16 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.991;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000432 : DNA mismatch repair protein MutS, C-terminal
IPR007696 : DNA mismatch repair protein MutS, core
IPR007861 : DNA mismatch repair protein MutS, clamp
GO :
0005524 : Molecular Function : ATP binding
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26.5, cyto_nucl 16, cyto 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022211)
HIX0022211
HIT000193924
(
L47578
)
(DNA mismatch repair protein Msh2; hMSH2; MutS protein homolog 2;)
genome : 47,630,291 - 47,710,162 (79,872)
query : 1 - 2,920 (2,920/2,920)
16 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.992;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000432 : DNA mismatch repair protein MutS, C-terminal
IPR007695 : DNA mismatch repair protein MutS-like, N-terminal
IPR007696 : DNA mismatch repair protein MutS, core
IPR007860 : DNA mismatch repair protein MutS, connector domain
IPR007861 : DNA mismatch repair protein MutS, clamp
GO :
0005524 : Molecular Function : ATP binding
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022211)
HIX0022211
HIT000193925
(
L47579
)
(DNA mismatch repair protein Msh2; hMSH2; MutS protein homolog 2;)
genome : 47,630,291 - 47,710,162 (79,872)
query : 1 - 2,920 (2,920/2,920)
16 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.993;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000432 : DNA mismatch repair protein MutS, C-terminal
IPR007695 : DNA mismatch repair protein MutS-like, N-terminal
IPR007696 : DNA mismatch repair protein MutS, core
IPR007860 : DNA mismatch repair protein MutS, connector domain
IPR007861 : DNA mismatch repair protein MutS, clamp
GO :
0005524 : Molecular Function : ATP binding
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022211)
HIX0022211
HIT000193926
(
L47580
)
(DNA mismatch repair protein Msh2; hMSH2; MutS protein homolog 2;)
genome : 47,630,291 - 47,710,162 (79,872)
query : 1 - 2,918 (2,918/2,918)
16 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.996;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000432 : DNA mismatch repair protein MutS, C-terminal
IPR007695 : DNA mismatch repair protein MutS-like, N-terminal
IPR007696 : DNA mismatch repair protein MutS, core
IPR007860 : DNA mismatch repair protein MutS, connector domain
IPR007861 : DNA mismatch repair protein MutS, clamp
GO :
0005524 : Molecular Function : ATP binding
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022211)
HIX0022211
HIT000193927
(
L47581
)
(DNA mismatch repair protein Msh2; hMSH2; MutS protein homolog 2;)
genome : 47,630,291 - 47,710,162 (79,872)
query : 1 - 2,919 (2,919/2,919)
16 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000432 : DNA mismatch repair protein MutS, C-terminal
IPR007695 : DNA mismatch repair protein MutS-like, N-terminal
IPR007696 : DNA mismatch repair protein MutS, core
IPR007860 : DNA mismatch repair protein MutS, connector domain
IPR007861 : DNA mismatch repair protein MutS, clamp
GO :
0005524 : Molecular Function : ATP binding
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022211)
HIX0022211
HIT000193928
(
L47582
)
(DNA mismatch repair protein Msh2; hMSH2; MutS protein homolog 2;)
genome : 47,630,291 - 47,710,162 (79,872)
query : 1 - 2,919 (2,919/2,919)
16 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.990;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000432 : DNA mismatch repair protein MutS, C-terminal
IPR007695 : DNA mismatch repair protein MutS-like, N-terminal
IPR007696 : DNA mismatch repair protein MutS, core
IPR007860 : DNA mismatch repair protein MutS, connector domain
IPR007861 : DNA mismatch repair protein MutS, clamp
GO :
0005524 : Molecular Function : ATP binding
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022211)
HIX0022211
HIT000193929
(
L47583
)
(DNA mismatch repair protein Msh2; hMSH2; MutS protein homolog 2;)
genome : 47,630,291 - 47,710,162 (79,872)
query : 1 - 2,919 (2,919/2,919)
16 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.990;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000432 : DNA mismatch repair protein MutS, C-terminal
IPR007695 : DNA mismatch repair protein MutS-like, N-terminal
IPR007696 : DNA mismatch repair protein MutS, core
IPR007860 : DNA mismatch repair protein MutS, connector domain
IPR007861 : DNA mismatch repair protein MutS, clamp
GO :
0005524 : Molecular Function : ATP binding
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022211)
HIX0022211
HIT000331064
(
AK223284
)
(DNA mismatch repair protein Msh2; hMSH2; MutS protein homolog 2;)
genome : 47,630,298 - 47,906,509 (276,212)
query : 3 - 3,283 (3,281/3,339)
19 exons
identity = 0.993
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.996;1.000;1.000;
1.000;0.992;0.965;1.000;0.941)3'
coverage = 0.999
InterPro :
IPR000432 : DNA mismatch repair protein MutS, C-terminal
IPR007695 : DNA mismatch repair protein MutS-like, N-terminal
IPR007696 : DNA mismatch repair protein MutS, core
IPR007860 : DNA mismatch repair protein MutS, connector domain
IPR007861 : DNA mismatch repair protein MutS, clamp
GO :
0005524 : Molecular Function : ATP binding
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022211)
HIX0022211
HIT000492387
(
AK297763
)
(DNA mismatch repair protein Msh2; hMSH2; MutS protein homolog 2;)
genome : 47,630,298 - 47,710,367 (80,070)
query : 3 - 2,912 (2,910/2,916)
15 exons
identity = 0.994
5'(0.996;0.943;1.000;1.000;1.000;0.995;0.991;
1.000;1.000;1.000;0.996;1.000;1.000;0.994;
1.000)3'
coverage = 0.998
InterPro :
IPR000432 : DNA mismatch repair protein MutS, C-terminal
IPR007695 : DNA mismatch repair protein MutS-like, N-terminal
IPR007696 : DNA mismatch repair protein MutS, core
IPR007860 : DNA mismatch repair protein MutS, connector domain
IPR007861 : DNA mismatch repair protein MutS, clamp
GO :
0005524 : Molecular Function : ATP binding
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28.5, cyto_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022211)
HIX0022211
HIT000491455
(
AK296831
)
(DNA mismatch repair protein Msh2 isoform 2.)
genome : 47,630,298 - 47,710,360 (80,063)
query : 2 - 2,677 (2,676/2,677)
15 exons
identity = 0.999
5'(1.000;1.000;0.964;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
InterPro :
IPR000432 : DNA mismatch repair protein MutS, C-terminal
IPR007696 : DNA mismatch repair protein MutS, core
IPR007861 : DNA mismatch repair protein MutS, clamp
GO :
0005524 : Molecular Function : ATP binding
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022211)
HIX0022211
HIT000057769
(
BX649122
)
(DNA mismatch repair protein Msh2; hMSH2; MutS protein homolog 2;)
genome : 47,630,311 - 47,710,361 (80,051)
query : 1 - 3,098 (3,098/3,116)
16 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.996;
0.994;1.000)3'
coverage = 1.000
InterPro :
IPR000432 : DNA mismatch repair protein MutS, C-terminal
IPR007695 : DNA mismatch repair protein MutS-like, N-terminal
IPR007696 : DNA mismatch repair protein MutS, core
IPR007860 : DNA mismatch repair protein MutS, connector domain
IPR007861 : DNA mismatch repair protein MutS, clamp
GO :
0005524 : Molecular Function : ATP binding
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022211)
HIX0022211
HIT000039221
(
BC021566
)
(DNA mismatch repair protein Msh2; hMSH2; MutS protein homolog 2;)
genome : 47,630,317 - 47,710,361 (80,045)
query : 1 - 3,092 (3,092/3,116)
16 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000432 : DNA mismatch repair protein MutS, C-terminal
IPR007695 : DNA mismatch repair protein MutS-like, N-terminal
IPR007696 : DNA mismatch repair protein MutS, core
IPR007860 : DNA mismatch repair protein MutS, connector domain
IPR007861 : DNA mismatch repair protein MutS, clamp
GO :
0005524 : Molecular Function : ATP binding
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022211)
Ortholog candidate ( ->
Evola
)
Gallus
sp. (Chicken) : AB104853
Canis
sp. (Dog) : AY705787
Danio
sp. (Zebrafish) : BC044370
Bos
sp. (Cow) : BC105268
Pongo
sp. (Orangutan) : CR861269
Equus
sp. (Horse) : ENSECAT00000011195
Macaca
sp. (Macaque) : ENSMMUT00000043556
Oryzias
sp. (Medaka) : ENSORLT00000012874
Tetraodon
sp. (Tetraodon) : GSTENT00005534001
Takifugu
sp. (Fugu) : SINFRUT00000142858
Mus
sp. (Mouse) : U21011
Rattus
sp. (Rat) : X93591
Monodelphis
sp. (Opossum) : XM_001382141
Pan
sp. (Chimpanzee) : XR_023988
HIX0022211
HIT000430196
(
AK311330
)
(DNA mismatch repair protein Msh2; hMSH2; MutS protein homolog 2;)
genome : 47,630,320 - 47,693,825 (63,506)
query : 1 - 1,166 (1,166/1,166)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR007695 : DNA mismatch repair protein MutS-like, N-terminal
IPR007696 : DNA mismatch repair protein MutS, core
GO :
0005524 : Molecular Function : ATP binding
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20.5, cyto_nucl 17.5, nucl 9.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022211)
HIX0022211
HIT000217535
(
U03911
)
(DNA mismatch repair protein Msh2; hMSH2; MutS protein homolog 2;)
genome : 47,630,328 - 47,710,360 (80,033)
query : 1 - 3,080 (3,080/3,080)
16 exons
identity = 1.000
5'(1.000;1.000;0.996;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000432 : DNA mismatch repair protein MutS, C-terminal
IPR007695 : DNA mismatch repair protein MutS-like, N-terminal
IPR007696 : DNA mismatch repair protein MutS, core
IPR007860 : DNA mismatch repair protein MutS, connector domain
IPR007861 : DNA mismatch repair protein MutS, clamp
GO :
0005524 : Molecular Function : ATP binding
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022211)
HIX0022211
HIT000085961
(
BC001122
)
(DNA mismatch repair protein Msh2; hMSH2; MutS protein homolog 2;)
genome : 47,630,328 - 47,657,004 (26,677)
query : 1 - 1,203 (1,203/1,222)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.999
InterPro :
IPR007695 : DNA mismatch repair protein MutS-like, N-terminal
IPR007696 : DNA mismatch repair protein MutS, core
IPR007860 : DNA mismatch repair protein MutS, connector domain
GO :
0005524 : Molecular Function : ATP binding
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, nucl 12, cysk 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022211)
HIX0022211
HIT000393012
(
DQ648894
)
(DNA mismatch repair protein Msh2 isoform 2.)
genome : 47,630,344 - 47,641,537 (11,194)
query : 1 - 630 (630/630)
4 exons
identity = 0.994
5'(0.990;1.000;0.986;1.000)3'
coverage = 1.000
InterPro :
IPR007695 : DNA mismatch repair protein MutS-like, N-terminal
IPR007860 : DNA mismatch repair protein MutS, connector domain
GO :
0005524 : Molecular Function : ATP binding
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23, mito 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022211)
HIX0022211
HIT000494291
(
AK299667
)
(DNA mismatch repair protein Msh2; MutS protein homolog 2;)
genome : 47,635,570 - 47,710,360 (74,791)
query : 1 - 2,537 (2,537/2,537)
14 exons
identity = 0.994
5'(1.000;0.944;0.967;1.000;1.000;1.000;1.000;
1.000;1.000;0.996;0.995;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000432 : DNA mismatch repair protein MutS, C-terminal
IPR007696 : DNA mismatch repair protein MutS, core
IPR007861 : DNA mismatch repair protein MutS, clamp
GO :
0005524 : Molecular Function : ATP binding
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 9.5, nucl 8, cyto_mito 5.5, extr 5, plas 4,
pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022211)
HIX0022211
HIT000393013
(
DQ648895
)
(DNA mismatch repair protein Msh2; hMSH2; MutS protein homolog 2;)
genome : 47,639,671 - 47,657,022 (17,352)
query : 1 - 305 (305/305)
3 exons
identity = 0.993
5'(1.000;0.985;1.000)3'
coverage = 1.000
InterPro :
IPR007696 : DNA mismatch repair protein MutS, core
GO :
0005524 : Molecular Function : ATP binding
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, cyto 6, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022211)
HIX0022211
HIT000393015
(
DQ648897
)
(DNA mismatch repair protein Msh2; hMSH2; MutS protein homolog 2;)
genome : 47,672,732 - 47,702,387 (29,656)
query : 1 - 511 (511/511)
4 exons
identity = 0.998
5'(1.000;1.000;1.000;0.996)3'
coverage = 1.000
InterPro :
IPR007696 : DNA mismatch repair protein MutS, core
GO :
0005524 : Molecular Function : ATP binding
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 12, extr 9, nucl 4.5,
extr_plas 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022211)
HIX0022211
HIT000393014
(
DQ648896
)
(DNA mismatch repair protein Msh2; hMSH2; MutS protein homolog 2;)
genome : 47,672,732 - 47,693,935 (21,204)
query : 1 - 461 (461/461)
4 exons
identity = 0.996
5'(1.000;0.992;0.992;1.000)3'
coverage = 1.000
InterPro :
IPR007696 : DNA mismatch repair protein MutS, core
GO :
0005524 : Molecular Function : ATP binding
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13.5, cyto 13, nucl 10, extr 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022211)
HIX0030321
HIT000095674
(
BC039407
)
Representative transcript
(Conserved hypothetical protein.)
genome : 47,680,552 - 47,681,568 (1,017)
query : 1 - 1,017 (1,017/1,032)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, extr 12
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030321)
HIX0022211
HIT000566281 (
ENST00000461394
)
(DNA mismatch repair protein Msh2; hMSH2; MutS protein homolog 2;)
genome : 47,707,936 - 47,789,450 (81,515)
query : 1 - 416 (416/416)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto 10, cyto_nucl 7.5, nucl 3, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022211)
HIX0022211
HIT000429545
(
AK310679
)
(Conserved hypothetical protein.)
genome : 47,707,969 - 47,740,373 (32,405)
query : 1 - 974 (974/974)
2 exons
identity = 0.998
5'(1.000;0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, cyto 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022211)
HIX0002041
HIT000021221
(
AK096366
)
(Conserved hypothetical protein.)
genome : 47,713,153 - 47,734,434 (21,282)
query : 50 - 2,078 (2,029/2,078)
3 exons
identity = 0.954
3'(0.998;0.588;0.703)5'
coverage = 0.976
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, cyto 6, nucl 3, cyto_pero 3, cyto_plas 3,
cyto_golg 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002041)
HIX0002041
HIT000547385 (
ENST00000449451
)
(Conserved hypothetical protein.)
genome : 47,713,153 - 47,715,691 (2,539)
query : 1 - 2,007 (2,007/2,007)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, nucl 12
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002041)
HIX0002041
HIT000012691
(
AK056077
)
Representative transcript
(Conserved hypothetical protein.)
genome : 47,713,160 - 47,734,434 (21,275)
query : 143 - 2,388 (2,246/2,388)
4 exons
identity = 0.958
3'(0.999;1.000;0.588;0.703)5'
coverage = 0.941
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15, extr 10, cyto 5.5, cyto_pero 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002041)
HIX0023930
HIT000076325
(
AF287302
)
(Potassium channel subfamily K member 12; Tandem pore domain halothane-inhibited potassium channel 2; THIK-2;)
genome : 47,747,916 - 47,797,470 (49,555)
query : 1 - 1,423 (1,423/1,449)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003280 : Two pore domain potassium channel
IPR005410 : Two pore domain potassium channel, THIK
IPR013099 : Two pore domain potassium channel domain
GO :
0005267 : Molecular Function : potassium channel activity
0016020 : Cellular Component : membrane
0016021 : Cellular Component : integral component of membrane
0071805 : Biological Process : potassium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023930)
HIX0023930
HIT000208563 (
NM_022055
)
(Potassium channel subfamily K member 12; Tandem pore domain halothane-inhibited potassium channel 2; THIK-2;)
genome : 47,747,916 - 47,797,470 (49,555)
query : 1 - 1,423 (1,423/1,449)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023930)
HIX0023930
HIT000125241 (
ENST00000327876
)
(Potassium channel subfamily K member 12; Tandem pore domain halothane-inhibited potassium channel 2; THIK-2;)
genome : 47,747,910 - 47,798,078 (50,169)
query : 1 - 2,037 (2,037/2,037)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023930)
HIX0023930
HIT000053234
(
BC047749
)
Representative transcript
(Potassium channel subfamily K member 12; Tandem pore domain halothane-inhibited potassium channel 2; THIK-2;)
genome : 47,747,931 - 47,797,498 (49,568)
query : 1 - 1,436 (1,436/1,450)
2 exons
identity = 0.999
3'(0.999;1.000)5'
coverage = 1.000
InterPro :
IPR003280 : Two pore domain potassium channel
IPR005410 : Two pore domain potassium channel, THIK
IPR013099 : Two pore domain potassium channel domain
GO :
0005267 : Molecular Function : potassium channel activity
0016020 : Cellular Component : membrane
0016021 : Cellular Component : integral component of membrane
0071805 : Biological Process : potassium ion transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023930)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AB052939
Rattus
sp. (Rat) : AF287300
Gallus
sp. (Chicken) : ENSGALT00000014571
Oryzias
sp. (Medaka) : ENSORLT00000013907
Pongo
sp. (Orangutan) : ENSPPYT00000014436
Tetraodon
sp. (Tetraodon) : GSTENT00030760001
Takifugu
sp. (Fugu) : SINFRUT00000145737
Macaca
sp. (Macaque) : XM_001113593
Monodelphis
sp. (Opossum) : XM_001375479
Pan
sp. (Chimpanzee) : XM_515460
Canis
sp. (Dog) : XM_538483
Bos
sp. (Cow) : XM_600204
Danio
sp. (Zebrafish) : XM_682469
HIX0149551
HIT000449331
(
DQ582800
)
Representative transcript
(Non-protein coding transcript.)
genome : 47,749,737 - 47,749,766 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0149551)
HIX0162748
HIT000533265 (
ENST00000435331
)
(Hypothetical short protein.)
genome : 47,754,676 - 47,756,303 (1,628)
query : 1 - 434 (434/434)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, cyto_nucl 8, nucl 7.5, extr_plas 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0162748)
HIX0162748
HIT000537116 (
ENST00000439182
)
(Hypothetical short protein.)
genome : 47,754,910 - 47,762,338 (7,429)
query : 1 - 362 (362/362)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, nucl 8, mito_pero 8, cyto_nucl 7.5,
E.R._mito 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0162748)
HIX0023930
HIT000596962 (
ENST00000493527
)
(Potassium channel subfamily K member 12; Tandem pore domain halothane-inhibited potassium channel 2; THIK-2;)
genome : 47,770,483 - 47,797,454 (26,972)
query : 1 - 833 (833/833)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 12, extr 8, plas 6, cyto_mito 6, mito_pero 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0023930)
HIX0022211
HIT000571939 (
ENST00000467323
)
(Conserved hypothetical protein.)
genome : 47,782,998 - 47,789,450 (6,453)
query : 1 - 313 (313/313)
2 exons
identity = 0.978
5'(1.000;0.970)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 27, nucl 2, cyto 2, cyto_nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022211)
HIX0002042
HIT000010047
(
AK026773
)
Representative transcript
(Conserved hypothetical protein.)
genome : 47,799,601 - 47,801,999 (2,399)
query : 1 - 2,399 (2,399/2,411)
1 exon
identity = 0.990
5'(0.990)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, mito 5, nucl 4, cyto_mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002042)
Ortholog candidate ( ->
Evola
)
Pongo
sp. (Orangutan) : ENSPPYT00000014435
Pan
sp. (Chimpanzee) : ENSPTRT00000058932
HIX0215125
HIT000712983 (
ENST00000601243
)
(Conserved hypothetical protein.)
genome : 47,799,601 - 47,801,998 (2,398)
query : 1 - 2,398 (2,398/2,398)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 11, mito 10, cyto 6, cyto_pero 4.5, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215125)
HIX0180216
HIT000197987_02 (
NM_000980
)
(Ribosomal protein L18a/LX domain containing protein.)
genome : 47,917,806 - 47,918,422 (617)
query : 43 - 659 (617/671)
1 exon
identity = 0.977
3'(0.977)5'
coverage = 0.920
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, cyto_nucl 11.5, cyto 8.5, extr 5, mito 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0180216)
HIX0180216
HIT000103642_02 (
ENST00000222247
)
(Ribosomal protein L18a/LX domain containing protein.)
genome : 47,917,806 - 47,918,422 (617)
query : 45 - 661 (617/665)
1 exon
identity = 0.977
3'(0.977)5'
coverage = 0.928
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, cyto_nucl 11.5, cyto 8.5, extr 5, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0180216)
HIX0180216
HIT000477632_02 (
ENST00000394214
)
(Ribosomal protein L18a/LX domain containing protein.)
genome : 47,917,806 - 47,918,416 (611)
query : 1 - 560 (560/563)
2 exons
identity = 0.959
3'(0.949;0.969)5'
coverage = 0.995
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11, cyto_nucl 10.5, cyto 8, mito 7, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0180216)
HIX0180216
HIT000711648_01 (
ENST00000599898
)
(Ribosomal protein L18a/LX domain containing protein.)
genome : 47,917,806 - 47,918,410 (605)
query : 1 - 488 (488/491)
2 exons
identity = 0.977
3'(0.979;0.966)5'
coverage = 0.994
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 10, nucl 9.5, cyto_nucl 8, cyto 5.5, mito 5,
extr_plas 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0180216)
HIX0180216
HIT000553980 (
ENST00000456046
)
(Ribosomal protein L18a/LX domain containing protein.)
genome : 47,917,855 - 47,918,385 (531)
query : 1 - 531 (531/531)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, cyto_nucl 11.5, cyto 8.5, extr 5, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0180216)
HIX0180216
HIT000567702_01 (
ENST00000462885
)
(Ribosomal protein L18a/LX domain containing protein.)
genome : 47,917,858 - 47,918,385 (528)
query : 1 - 528 (528/528)
1 exon
identity = 0.973
3'(0.973)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, cyto_nucl 11.5, cyto 8.5, extr 5, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0180216)
HIX0180216
HIT000524245_02 (
ENST00000426311
)
(Ribosomal protein L18a/LX domain containing protein.)
genome : 47,917,976 - 47,918,385 (410)
query : 1 - 410 (410/411)
1 exon
identity = 0.951
3'(0.951)5'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 11, mito 10, nucl 7, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0180216)
HIX0180216
HIT000101222_04
(
D28393
)
Representative transcript
(Non-protein coding transcript.)
genome : 47,918,380 - 47,918,420 (41)
query : 1 - 41 (41/41)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0180216)
HIX0029928
HIT000552071 (
ENST00000454137
)
(Conserved hypothetical protein.)
genome : 47,922,955 - 47,984,932 (61,978)
query : 1 - 725 (725/725)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 9, nucl 8, cyto_nucl 7.5, extr 7, cyto 5,
mito_pero 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0029928)
HIX0162364
HIT000517058 (
ENST00000419124
)
(Nucleoside diphosphate kinase family protein.)
genome : 47,932,607 - 47,933,118 (512)
query : 1 - 395 (395/395)
2 exons
identity = 0.992
5'(0.985;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 22.5, mito_pero 12.5, cyto 5.5, cyto_nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0162364)
HIX0029928
HIT000089931
(
BC019620
)
(Conserved hypothetical protein.)
genome : 47,935,420 - 47,936,583 (1,164)
query : 1 - 1,164 (1,164/1,178)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0029928)
HIX0029928
HIT000096358
(
BC040724
)
Representative transcript
(Conserved hypothetical protein.)
genome : 47,935,637 - 47,936,834 (1,198)
query : 1 - 1,198 (1,198/1,212)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 11.5, extr 9, nucl 4.5,
extr_plas 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0029928)
HIX0214977
HIT000518722 (
ENST00000420788
)
(Conserved hypothetical protein.)
genome : 47,958,541 - 47,959,174 (634)
query : 1 - 634 (634/634)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto 11.5, cyto_nucl 9, nucl 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214977)
HIX0214753
HIT000554180 (
ENST00000456246
)
(Conserved hypothetical protein.)
genome : 48,010,267 - 48,026,059 (15,793)
query : 1 - 846 (846/846)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18, nucl 7, cyto_nucl 6, extr 3, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214753)
HIX0214753
HIT000337815
(
BC104665
)
Representative transcript
(PWWP domain containing protein.)
genome : 48,010,300 - 48,025,853 (15,554)
query : 2 - 805 (804/830)
4 exons
identity = 0.999
5'(0.997;1.000;1.000;1.000)3'
coverage = 0.999
InterPro :
IPR000313 : PWWP domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25, mito 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214753)
HIX0214753
HIT000596625 (
ENST00000493177
)
(Conserved hypothetical protein.)
genome : 48,010,309 - 48,012,115 (1,807)
query : 1 - 813 (813/813)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 21, nucl 6, cyto_nucl 4.5, extr 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214753)
HIX0214753
HIT000553317 (
ENST00000455383
)
(PWWP domain containing protein.)
genome : 48,010,724 - 48,023,210 (12,487)
query : 1 - 570 (570/578)
3 exons
identity = 0.996
5'(1.000;1.000;0.989)3'
coverage = 0.986
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20.5, cyto_nucl 12, mito 5, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214753)
HIX0214753
HIT000518747 (
ENST00000420813
)
(PWWP domain containing protein.)
genome : 48,011,094 - 48,023,175 (12,082)
query : 1 - 491 (491/491)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21.5, cyto_nucl 12, mito 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214753)
HIX0214753
HIT000509753 (
ENST00000411819
)
(PWWP domain containing protein.)
genome : 48,011,320 - 48,025,872 (14,553)
query : 1 - 548 (548/548)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, cyto_nucl 13, nucl 8, extr 3, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214753)
HIX0214704
HIT000532168 (
ENST00000434234
)
(Zinc finger, N-recognin domain containing protein.)
genome : 48,016,455 - 48,036,390 (19,936)
query : 1 - 572 (572/572)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214704)
HIX0214704
HIT000505362 (
ENST00000405808
)
(Zinc finger, N-recognin domain containing protein.)
genome : 48,016,461 - 48,036,324 (19,864)
query : 1 - 299 (299/299)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214704)
HIX0162966
HIT000542448 (
ENST00000444514
)
(Conserved hypothetical protein.)
genome : 48,024,965 - 48,025,230 (266)
query : 1 - 266 (266/266)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21.5, cyto_nucl 12.5, extr 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0162966)
HIX0214658
HIT000049954
(
AK130683
)
Representative transcript
(DNA mismatch repair protein MutS-homologue MSH6 family protein.)
genome : 48,026,432 - 48,034,091 (7,660)
query : 1 - 2,866 (2,866/2,866)
7 exons
identity = 0.999
5'(0.999;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000432 : DNA mismatch repair protein MutS, C-terminal
IPR007695 : DNA mismatch repair protein MutS-like, N-terminal
IPR007696 : DNA mismatch repair protein MutS, core
IPR007860 : DNA mismatch repair protein MutS, connector domain
IPR007861 : DNA mismatch repair protein MutS, clamp
IPR015536 : DNA mismatch repair protein MutS-homologue MSH6
IPR016151 : DNA mismatch repair protein MutS, N-terminal
GO :
0005524 : Molecular Function : ATP binding
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24, extr 2, E.R._mito 2, mito 1.5, E.R. 1.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214658)
HIX0214658
HIT000325944
(
Y16676
)
(DNA mismatch repair protein MutS-homologue MSH6 family protein.)
genome : 48,028,136 - 48,034,088 (5,953)
query : 1 - 1,158 (1,158/1,158)
7 exons
identity = 0.989
5'(0.994;0.981;1.000;1.000;0.974;1.000;0.982)3'
coverage = 1.000
InterPro :
IPR000432 : DNA mismatch repair protein MutS, C-terminal
IPR015536 : DNA mismatch repair protein MutS-homologue MSH6
GO :
0005524 : Molecular Function : ATP binding
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23, mito 5, extr 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214658)
HIX0214704
HIT000075525
(
AF264714
)
Representative transcript
(Zinc finger, N-recognin domain containing protein.)
genome : 48,033,908 - 48,038,800 (4,893)
query : 1 - 3,223 (3,223/3,262)
4 exons
identity = 0.998
3'(0.996;1.000;1.000;0.999)5'
coverage = 1.000
InterPro :
IPR003126 : Zinc finger, N-recognin
GO :
0004842 : Molecular Function : ubiquitin-protein transferase activity
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, extr 12, cyto_nucl 8.5, E.R. 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214704)
HIX0214704
HIT000569910 (
ENST00000465204
)
(Zinc finger, N-recognin domain containing protein.)
genome : 48,033,908 - 48,038,800 (4,893)
query : 1 - 3,141 (3,141/3,158)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, cyto 4.5, cyto_nucl 3, mito 2, E.R. 2,
E.R._mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214704)
HIX0214701
HIT000072670
(
AF176706
)
Representative transcript
(F-box domain containing protein.)
genome : 48,064,057 - 48,132,802 (68,746)
query : 1 - 649 (649/666)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001810 : F-box domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, nucl 11, cyto 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214701)
HIX0214701
HIT000359594 (
ENST00000378314
)
(F-box domain containing protein.)
genome : 48,064,127 - 48,132,814 (68,688)
query : 1 - 591 (591/591)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, nucl 11, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0214701)
HIX0030077
HIT000066127
(
AF075105
)
Representative transcript
(Hypothetical short protein.)
genome : 48,077,476 - 48,077,816 (341)
query : 1 - 341 (341/341)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
This sequence is too short.
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030077)
HIX0002038
HIT000013078
(
AK056464
)
Representative transcript
(Tetratricopeptide repeat protein 7A.)
genome : 47,143,296 - 47,301,187 (157,892)
query : 1 - 3,033 (3,033/3,033)
21 exons
identity = 0.999
5'(1.000;1.000;0.994;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.993;0.995;1.000)3'
coverage = 1.000
InterPro :
IPR001440 : Tetratricopeptide TPR1
IPR011990 : Tetratricopeptide-like helical domain
IPR013026 : Tetratricopeptide repeat-containing domain
IPR019734 : Tetratricopeptide repeat
IPR026900 : Tetratricopeptide repeat protein 7A
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14, nucl 13, cyto 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002038)
Ortholog candidate ( ->
Evola
)
Gallus
sp. (Chicken) : AJ720767
Mus
sp. (Mouse) : AK040578
Rattus
sp. (Rat) : BC098811
Tetraodon
sp. (Tetraodon) : CR636049
Canis
sp. (Dog) : ENSCAFT00000004150
Oryzias
sp. (Medaka) : ENSORLT00000001783
Pongo
sp. (Orangutan) : ENSPPYT00000014443
Takifugu
sp. (Fugu) : SINFRUT00000150243
Macaca
sp. (Macaque) : XM_001113315
Monodelphis
sp. (Opossum) : XM_001375518
Equus
sp. (Horse) : XM_001498137
Danio
sp. (Zebrafish) : XM_001921194
Pan
sp. (Chimpanzee) : XM_515455
HIX0002038
HIT000507278 (
ENST00000409245
)
(Tetratricopeptide repeat protein 7A.)
genome : 47,143,296 - 47,301,187 (157,892)
query : 1 - 3,033 (3,033/3,033)
21 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14, nucl 13, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002038)
HIX0002038
HIT000317420 (
NM_020458
)
(Tetratricopeptide repeat protein 7A; TPR repeat protein 7A;)
genome : 47,168,313 - 47,303,275 (134,963)
query : 1 - 5,158 (5,158/5,167)
20 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, cyto_nucl 12.8333, cyto_golg 10.3333,
nucl 9.5, golg 4.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002038)
HIX0002038
HIT000121960 (
ENST00000319190
)
(Tetratricopeptide repeat protein 7A; TPR repeat protein 7A;)
genome : 47,168,313 - 47,303,274 (134,962)
query : 1 - 5,157 (5,157/5,157)
20 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, cyto_nucl 12.8333, cyto_golg 10.3333,
nucl 9.5, golg 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002038)
HIX0002038
HIT000029113
(
AL834383
)
(Tetratricopeptide repeat protein 7A; TPR repeat protein 7A;)
genome : 47,168,313 - 47,301,282 (132,970)
query : 1 - 3,165 (3,165/3,178)
20 exons
identity = 0.999
5'(0.998;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.986;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001440 : Tetratricopeptide TPR1
IPR011990 : Tetratricopeptide-like helical domain
IPR013026 : Tetratricopeptide repeat-containing domain
IPR019734 : Tetratricopeptide repeat
IPR026900 : Tetratricopeptide repeat protein 7A
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, cyto_nucl 12.8333, cyto_golg 10.3333,
nucl 9.5, golg 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002038)
HIX0002038
HIT000334046
(
BC047709
)
(Tetratricopeptide repeat protein 7A.)
genome : 47,168,414 - 47,277,164 (108,751)
query : 1 - 2,204 (2,204/2,464)
17 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.986;1.000;1.000)3'
coverage = 0.913
InterPro :
IPR011990 : Tetratricopeptide-like helical domain
IPR013026 : Tetratricopeptide repeat-containing domain
IPR026900 : Tetratricopeptide repeat protein 7A
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 16.5, cyto_mito 11, nucl 9.5, cyto_nucl 7.5,
cyto 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002038)
HIX0002038
HIT000566476 (
ENST00000461601
)
(Tetratricopeptide repeat protein 7A.)
genome : 47,168,414 - 47,277,164 (108,751)
query : 1 - 2,204 (2,204/2,204)
17 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15.5, cyto_mito 11, nucl 8.5, cyto_nucl 7.5,
cyto 5, cyto_pero 4.66667
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002038)
HIX0002038
HIT000339914
(
BC111487
)
(Tetratricopeptide repeat protein 7A.)
genome : 47,168,425 - 47,302,454 (134,030)
query : 1 - 4,306 (4,306/4,321)
21 exons
identity = 0.997
5'(1.000;1.000;1.000;1.000;1.000;0.987;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.993;1.000;0.993)3'
coverage = 1.000
InterPro :
IPR001440 : Tetratricopeptide TPR1
IPR011990 : Tetratricopeptide-like helical domain
IPR013026 : Tetratricopeptide repeat-containing domain
IPR019734 : Tetratricopeptide repeat
IPR026900 : Tetratricopeptide repeat protein 7A
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 12.8333, nucl 10.5,
cyto_golg 9.33333, golg 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002038)
HIX0002038
HIT000478249 (
ENST00000394850
)
(Tetratricopeptide repeat protein 7A.)
genome : 47,168,425 - 47,302,463 (134,039)
query : 1 - 4,306 (4,306/4,306)
21 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 12.8333, nucl 10.5,
cyto_golg 9.33333, golg 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002038)
HIX0002038
HIT000109017 (
ENST00000263737
)
(Tetratricopeptide repeat protein 7A.)
genome : 47,168,682 - 47,301,062 (132,381)
query : 1 - 2,418 (2,418/2,418)
19 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, nucl 8, mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002038)
HIX0002038
HIT000340662
(
BC114365
)
(Tetratricopeptide repeat protein 7A.)
genome : 47,168,682 - 47,301,062 (132,381)
query : 1 - 2,418 (2,418/2,418)
19 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.994;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001440 : Tetratricopeptide TPR1
IPR011990 : Tetratricopeptide-like helical domain
IPR013026 : Tetratricopeptide repeat-containing domain
IPR019734 : Tetratricopeptide repeat
IPR026900 : Tetratricopeptide repeat protein 7A
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, nucl 8, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002038)
HIX0002038
HIT000539848 (
ENST00000441914
)
(Tetratricopeptide repeat protein 7A.)
genome : 47,168,682 - 47,301,062 (132,381)
query : 1 - 2,418 (2,418/2,418)
19 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, nucl 8, mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002038)
HIX0002038
HIT000000856
(
AB032966
)
(Tetratricopeptide repeat protein 7A.)
genome : 47,177,560 - 47,303,276 (125,717)
query : 1 - 4,748 (4,748/4,748)
21 exons
identity = 0.997
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.991;1.000;1.000;1.000;0.996)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17.5, cyto_mito 12, nucl 8.5, cyto_nucl 7.5,
cyto 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002038)
HIX0002038
HIT000507850 (
ENST00000409825
)
(Tetratricopeptide repeat protein 7A.)
genome : 47,177,560 - 47,303,276 (125,717)
query : 1 - 4,739 (4,739/4,739)
21 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17.5, cyto_mito 12, nucl 8.5, cyto_nucl 7.5,
cyto 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002038)
HIX0149919
HIT000428235
(
AK309369
)
Representative transcript
(Conserved hypothetical protein.)
genome : 47,293,080 - 47,403,650 (110,571)
query : 28 - 1,010 (983/1,010)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 0.973
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14, mito 11, cyto 3, extr 2, pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0149919)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK005861
Bos
sp. (Cow) : ENSBTAT00000011372
Canis
sp. (Dog) : ENSCAFT00000004157
Equus
sp. (Horse) : ENSECAT00000018928
Pongo
sp. (Orangutan) : ENSPPYT00000014442
Takifugu
sp. (Fugu) : SINFRUT00000181693
Macaca
sp. (Macaque) : XM_001110047
Monodelphis
sp. (Opossum) : XM_001382143
Pan
sp. (Chimpanzee) : XM_515456
HIX0149919
HIT000520203 (
ENST00000422269
)
(Conserved hypothetical protein.)
genome : 47,293,080 - 47,403,650 (110,571)
query : 1 - 983 (983/983)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14, mito 11, cyto 3, extr 2, pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0149919)
HIX0002043
HIT000264423
(
BC071594
)
(DNA mismatch repair protein Msh6; hMSH6; G/T mismatch-binding protein; GTBP; GTMBP; MutS-alpha 160 kDa subunit; p160;)
genome : 48,010,221 - 48,034,092 (23,872)
query : 4 - 4,161 (4,158/4,268)
9 exons
identity = 0.999
5'(1.000;0.995;0.999;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 0.999
InterPro :
IPR000432 : DNA mismatch repair protein MutS, C-terminal
IPR007695 : DNA mismatch repair protein MutS-like, N-terminal
IPR007696 : DNA mismatch repair protein MutS, core
IPR007860 : DNA mismatch repair protein MutS, connector domain
IPR007861 : DNA mismatch repair protein MutS, clamp
IPR015536 : DNA mismatch repair protein MutS-homologue MSH6
IPR016151 : DNA mismatch repair protein MutS, N-terminal
GO :
0005524 : Molecular Function : ATP binding
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002043)
HIX0002043
HIT000197228 (
NM_000179
)
(DNA mismatch repair protein Msh6; hMSH6; G/T mismatch-binding protein; GTBP; GTMBP; MutS-alpha 160 kDa subunit; p160;)
genome : 48,010,221 - 48,034,092 (23,872)
query : 1 - 4,328 (4,328/4,435)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002043)
HIX0002043
HIT000104549 (
ENST00000234420
)
(DNA mismatch repair protein Msh6; hMSH6; G/T mismatch-binding protein; GTBP; GTMBP; MutS-alpha 160 kDa subunit; p160;)
genome : 48,010,221 - 48,034,092 (23,872)
query : 1 - 4,328 (4,328/4,328)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002043)
HIX0002043
HIT000543437 (
ENST00000445503
)
(DNA mismatch repair protein Msh6; hMSH6; G/T mismatch-binding protein; GTBP; GTMBP; MutS-alpha 160 kDa subunit; p160;)
genome : 48,010,221 - 48,034,092 (23,872)
query : 1 - 4,158 (4,158/4,158)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002043)
HIX0002043
HIT000218941
(
U28946
)
Representative transcript
(DNA mismatch repair protein Msh6; hMSH6; G/T mismatch-binding protein; GTBP; GTMBP; MutS-alpha 160 kDa subunit; p160;)
genome : 48,010,286 - 48,034,092 (23,807)
query : 1 - 4,264 (4,264/4,264)
10 exons
identity = 1.000
5'(0.997;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.994)3'
coverage = 1.000
InterPro :
IPR000313 : PWWP domain
IPR000432 : DNA mismatch repair protein MutS, C-terminal
IPR007695 : DNA mismatch repair protein MutS-like, N-terminal
IPR007696 : DNA mismatch repair protein MutS, core
IPR007860 : DNA mismatch repair protein MutS, connector domain
IPR007861 : DNA mismatch repair protein MutS, clamp
IPR015536 : DNA mismatch repair protein MutS-homologue MSH6
IPR016151 : DNA mismatch repair protein MutS, N-terminal
GO :
0005524 : Molecular Function : ATP binding
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002043)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK088259
Danio
sp. (Zebrafish) : BC044350
Bos
sp. (Cow) : BC151693
Equus
sp. (Horse) : ENSECAT00000006218
Oryzias
sp. (Medaka) : ENSORLT00000013894
Pongo
sp. (Orangutan) : ENSPPYT00000014433
Rattus
sp. (Rat) : ENSRNOT00000021923
Tetraodon
sp. (Tetraodon) : GSTENT00030759001
Takifugu
sp. (Fugu) : SINFRUT00000167112
Macaca
sp. (Macaque) : XM_001113749
Monodelphis
sp. (Opossum) : XM_001382140
Canis
sp. (Dog) : XM_531814
Pan
sp. (Chimpanzee) : XR_024052
HIX0002043
HIT000102045
(
D89646
)
(DNA mismatch repair protein Msh6; hMSH6; G/T mismatch-binding protein; GTBP; GTMBP; MutS-alpha 160 kDa subunit; p160;)
genome : 48,010,290 - 48,028,471 (18,182)
query : 1 - 3,432 (3,432/3,432)
4 exons
identity = 0.998
5'(0.994;1.000;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR000313 : PWWP domain
IPR007695 : DNA mismatch repair protein MutS-like, N-terminal
IPR007696 : DNA mismatch repair protein MutS, core
IPR007860 : DNA mismatch repair protein MutS, connector domain
IPR007861 : DNA mismatch repair protein MutS, clamp
IPR015536 : DNA mismatch repair protein MutS-homologue MSH6
IPR016151 : DNA mismatch repair protein MutS, N-terminal
GO :
0005524 : Molecular Function : ATP binding
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23.5, cyto_nucl 14, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002043)
HIX0002043
HIT000220324
(
U54777
)
(DNA mismatch repair protein Msh6; hMSH6; G/T mismatch-binding protein; GTBP; GTMBP; MutS-alpha 160 kDa subunit; p160;)
genome : 48,010,303 - 48,034,090 (23,788)
query : 1 - 4,244 (4,244/4,244)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000313 : PWWP domain
IPR000432 : DNA mismatch repair protein MutS, C-terminal
IPR007695 : DNA mismatch repair protein MutS-like, N-terminal
IPR007696 : DNA mismatch repair protein MutS, core
IPR007860 : DNA mismatch repair protein MutS, connector domain
IPR007861 : DNA mismatch repair protein MutS, clamp
IPR015536 : DNA mismatch repair protein MutS-homologue MSH6
IPR016151 : DNA mismatch repair protein MutS, N-terminal
GO :
0005524 : Molecular Function : ATP binding
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002043)
HIX0002043
HIT000031813
(
BC004246
)
(DNA mismatch repair protein Msh6; hMSH6; G/T mismatch-binding protein; GTBP; GTMBP; MutS-alpha 160 kDa subunit; p160;)
genome : 48,010,321 - 48,034,092 (23,772)
query : 1 - 4,228 (4,228/4,249)
10 exons
identity = 0.999
5'(0.997;0.995;0.994;1.000;1.000;1.000;1.000;
1.000;1.000;0.994)3'
coverage = 1.000
InterPro :
IPR000313 : PWWP domain
IPR000432 : DNA mismatch repair protein MutS, C-terminal
IPR007695 : DNA mismatch repair protein MutS-like, N-terminal
IPR007696 : DNA mismatch repair protein MutS, core
IPR007860 : DNA mismatch repair protein MutS, connector domain
IPR007861 : DNA mismatch repair protein MutS, clamp
IPR015536 : DNA mismatch repair protein MutS-homologue MSH6
IPR016151 : DNA mismatch repair protein MutS, N-terminal
GO :
0005524 : Molecular Function : ATP binding
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002043)
HIX0002043
HIT000488545
(
AK293921
)
(DNA mismatch repair protein Msh6; hMSH6; G/T mismatch-binding protein; GTBP; GTMBP; MutS-alpha 160 kDa subunit; p160;)
genome : 48,010,322 - 48,034,084 (23,763)
query : 1 - 3,829 (3,829/3,829)
8 exons
identity = 0.999
5'(1.000;1.000;0.996;1.000;1.000;1.000;0.995;
1.000)3'
coverage = 1.000
InterPro :
IPR000432 : DNA mismatch repair protein MutS, C-terminal
IPR007695 : DNA mismatch repair protein MutS-like, N-terminal
IPR007696 : DNA mismatch repair protein MutS, core
IPR007860 : DNA mismatch repair protein MutS, connector domain
IPR007861 : DNA mismatch repair protein MutS, clamp
IPR015536 : DNA mismatch repair protein MutS-homologue MSH6
IPR016151 : DNA mismatch repair protein MutS, N-terminal
GO :
0005524 : Molecular Function : ATP binding
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002043)
HIX0002043
HIT000639066 (
ENST00000540021
)
(DNA mismatch repair protein Msh6; hMSH6; G/T mismatch-binding protein; GTBP; GTMBP; MutS-alpha 160 kDa subunit; p160;)
genome : 48,010,322 - 48,034,084 (23,763)
query : 1 - 3,829 (3,829/3,829)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002043)
HIX0002043
HIT000427258
(
AK308392
)
(DNA mismatch repair protein Msh6; hMSH6; G/T mismatch-binding protein; GTBP; GTMBP; MutS-alpha 160 kDa subunit; p160;)
genome : 48,010,322 - 48,026,865 (16,544)
query : 1 - 1,793 (1,793/1,793)
4 exons
identity = 0.998
5'(1.000;1.000;0.994;0.998)3'
coverage = 1.000
InterPro :
IPR000313 : PWWP domain
IPR007695 : DNA mismatch repair protein MutS-like, N-terminal
IPR015536 : DNA mismatch repair protein MutS-homologue MSH6
IPR016151 : DNA mismatch repair protein MutS, N-terminal
GO :
0005524 : Molecular Function : ATP binding
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002043)
HIX0002043
HIT000499359
(
AK304735
)
(DNA mismatch repair protein Msh6; hMSH6; G/T mismatch-binding protein; GTBP; GTMBP; MutS-alpha 160 kDa subunit; p160;)
genome : 48,011,094 - 48,034,084 (22,991)
query : 1 - 4,055 (4,055/4,055)
10 exons
identity = 0.999
5'(1.000;1.000;1.000;0.999;1.000;1.000;1.000;
0.994;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000432 : DNA mismatch repair protein MutS, C-terminal
IPR007695 : DNA mismatch repair protein MutS-like, N-terminal
IPR007696 : DNA mismatch repair protein MutS, core
IPR007860 : DNA mismatch repair protein MutS, connector domain
IPR007861 : DNA mismatch repair protein MutS, clamp
IPR015536 : DNA mismatch repair protein MutS-homologue MSH6
IPR016151 : DNA mismatch repair protein MutS, N-terminal
GO :
0005524 : Molecular Function : ATP binding
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, mito 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002043)
HIX0002043
HIT000637181 (
ENST00000538136
)
(DNA mismatch repair protein Msh6; hMSH6; G/T mismatch-binding protein; GTBP; GTMBP; MutS-alpha 160 kDa subunit; p160;)
genome : 48,011,094 - 48,034,084 (22,991)
query : 1 - 4,055 (4,055/4,055)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002043)
HIX0002044
HIT000024782
(
AL117620
)
(F-box only protein 11; Vitiligo-associated protein 1; VIT-1;)
genome : 48,034,062 - 48,040,443 (6,382)
query : 1 - 1,822 (1,822/1,843)
6 exons
identity = 0.998
3'(0.997;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.999
InterPro :
IPR003126 : Zinc finger, N-recognin
GO :
0004842 : Molecular Function : ubiquitin-protein transferase activity
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, cyto 4.5, cyto_nucl 3, mito 2, E.R. 2,
E.R._mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002044)
HIX0002044
HIT000655603 (
NM_001190274
)
(F-box only protein 11; Vitiligo-associated protein 1; VIT-1;)
genome : 48,034,060 - 48,132,932 (98,873)
query : 1 - 4,054 (4,054/4,070)
23 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 13.5, cyto 8.5, cyto_mito 8.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002044)
HIX0002044
HIT000097578
(
BC043258
)
(F-box only protein 11; Vitiligo-associated protein 1; VIT-1;)
genome : 48,034,061 - 48,132,818 (98,758)
query : 6 - 3,943 (3,938/3,960)
23 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 0.998
InterPro :
IPR001810 : F-box domain
IPR003126 : Zinc finger, N-recognin
IPR006626 : Parallel beta-helix repeat
IPR006633 : Carbohydrate-binding/sugar hydrolysis domain
IPR007742 : Periplasmic copper-binding protein NosD, beta helix domain
IPR011050 : Pectin lyase fold/virulence factor
IPR012334 : Pectin lyase fold
IPR022441 : Parallel beta-helix repeat-2
GO :
0004842 : Molecular Function : ubiquitin-protein transferase activity
0005515 : Molecular Function : protein binding
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 18.1667, nucl 14.5, cyto 14.5,
cyto_mito 8.66667, cyto_plas 8.66667
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002044)
HIX0002044
HIT000209743 (
NM_025133
)
(F-box only protein 11 isoform 1.)
genome : 48,034,060 - 48,115,858 (81,799)
query : 1 - 3,843 (3,843/3,859)
23 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 18.1667, nucl 14.5, cyto 14.5,
cyto_mito 8.66667, cyto_plas 8.66667
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002044)
HIX0002044
HIT000504457 (
ENST00000403359
)
(F-box only protein 11; Vitiligo-associated protein 1; VIT-1;)
genome : 48,034,059 - 48,132,932 (98,874)
query : 1 - 4,055 (4,055/4,055)
23 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 13.5, cyto 8.5, cyto_mito 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002044)
HIX0002044
HIT000504148 (
ENST00000402508
)
(F-box only protein 11 isoform 1.)
genome : 48,034,059 - 48,115,858 (81,800)
query : 1 - 3,844 (3,844/3,844)
23 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 18.1667, nucl 14.5, cyto 14.5,
cyto_mito 8.66667, cyto_plas 8.66667
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002044)
HIX0002044
HIT000120873 (
ENST00000316377
)
(F-box only protein 11; Vitiligo-associated protein 1; VIT-1;)
genome : 48,034,063 - 48,132,814 (98,752)
query : 1 - 3,933 (3,933/3,933)
23 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 18.1667, nucl 14.5, cyto 14.5,
cyto_mito 8.66667, cyto_plas 8.66667
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002044)
HIX0002044
HIT000008751
(
AK025477
)
(F-box only protein 11; Vitiligo-associated protein 1; VIT-1;)
genome : 48,034,111 - 48,045,988 (11,878)
query : 1 - 1,995 (1,995/2,012)
8 exons
identity = 0.999
3'(0.999;1.000;1.000;1.000;1.000;0.993;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR003126 : Zinc finger, N-recognin
IPR006626 : Parallel beta-helix repeat
IPR006633 : Carbohydrate-binding/sugar hydrolysis domain
IPR011050 : Pectin lyase fold/virulence factor
IPR012334 : Pectin lyase fold
IPR022441 : Parallel beta-helix repeat-2
GO :
0004842 : Molecular Function : ubiquitin-protein transferase activity
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, cyto 12, cyto_nucl 8, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002044)
HIX0002044
HIT000390235
(
BC130445
)
(F-box only protein 11; Vitiligo-associated protein 1; VIT-1;)
genome : 48,034,550 - 48,132,657 (98,108)
query : 1 - 3,288 (3,288/3,288)
23 exons
identity = 1.000
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR001810 : F-box domain
IPR003126 : Zinc finger, N-recognin
IPR006626 : Parallel beta-helix repeat
IPR006633 : Carbohydrate-binding/sugar hydrolysis domain
IPR007742 : Periplasmic copper-binding protein NosD, beta helix domain
IPR011050 : Pectin lyase fold/virulence factor
IPR012334 : Pectin lyase fold
IPR022441 : Parallel beta-helix repeat-2
GO :
0004842 : Molecular Function : ubiquitin-protein transferase activity
0005515 : Molecular Function : protein binding
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 18.1667, nucl 14.5, cyto 14.5,
cyto_mito 8.66667, cyto_plas 8.66667
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002044)
HIX0002044
HIT000500497
(
BC136480
)
Representative transcript
(F-box only protein 11; Vitiligo-associated protein 1; VIT-1;)
genome : 48,034,550 - 48,132,657 (98,108)
query : 1 - 3,289 (3,289/3,289)
23 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR001810 : F-box domain
IPR003126 : Zinc finger, N-recognin
IPR006626 : Parallel beta-helix repeat
IPR006633 : Carbohydrate-binding/sugar hydrolysis domain
IPR007742 : Periplasmic copper-binding protein NosD, beta helix domain
IPR011050 : Pectin lyase fold/virulence factor
IPR012334 : Pectin lyase fold
IPR022441 : Parallel beta-helix repeat-2
GO :
0004842 : Molecular Function : ubiquitin-protein transferase activity
0005515 : Molecular Function : protein binding
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 18.1667, nucl 14.5, cyto 14.5,
cyto_mito 8.66667, cyto_plas 8.66667
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002044)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB172178
Rattus
sp. (Rat) : AY274810
Mus
sp. (Mouse) : BC110686
Danio
sp. (Zebrafish) : BC125857
Bos
sp. (Cow) : BC151660
Gallus
sp. (Chicken) : CR523245
Canis
sp. (Dog) : ENSCAFT00000004211
Equus
sp. (Horse) : ENSECAT00000010973
Oryzias
sp. (Medaka) : ENSORLT00000012820
Oryzias
sp. (Medaka) : ENSORLT00000013865
Tetraodon
sp. (Tetraodon) : GSTENT00030758001
Takifugu
sp. (Fugu) : SINFRUT00000142874
Takifugu
sp. (Fugu) : SINFRUT00000145734
Monodelphis
sp. (Opossum) : XM_001382139
Danio
sp. (Zebrafish) : XM_691042
Pan
sp. (Chimpanzee) : XR_024045
HIX0002044
HIT000035917
(
BC012728
)
(F-box only protein 11; Vitiligo-associated protein 1; VIT-1;)
genome : 48,034,617 - 48,046,160 (11,544)
query : 1 - 1,569 (1,569/1,587)
9 exons
identity = 0.999
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
InterPro :
IPR003126 : Zinc finger, N-recognin
IPR006626 : Parallel beta-helix repeat
IPR006633 : Carbohydrate-binding/sugar hydrolysis domain
IPR011050 : Pectin lyase fold/virulence factor
IPR012334 : Pectin lyase fold
IPR022441 : Parallel beta-helix repeat-2
GO :
0004842 : Molecular Function : ubiquitin-protein transferase activity
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, cyto 12, cyto_nucl 8, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002044)
HIX0002044
HIT000022588
(
AK097734
)
(F-box only protein 11; Vitiligo-associated protein 1; VIT-1;)
genome : 48,034,623 - 48,059,590 (24,968)
query : 1 - 2,026 (2,026/2,026)
12 exons
identity = 0.998
3'(0.997;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.988;1.000;0.990)5'
coverage = 1.000
InterPro :
IPR003126 : Zinc finger, N-recognin
IPR006626 : Parallel beta-helix repeat
IPR006633 : Carbohydrate-binding/sugar hydrolysis domain
IPR011050 : Pectin lyase fold/virulence factor
IPR012334 : Pectin lyase fold
IPR022441 : Parallel beta-helix repeat-2
GO :
0004842 : Molecular Function : ubiquitin-protein transferase activity
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, nucl 6, cysk 5, pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002044)
HIX0002044
HIT000532457 (
ENST00000434523
)
(F-box only protein 11; Vitiligo-associated protein 1; VIT-1;)
genome : 48,034,623 - 48,059,590 (24,968)
query : 1 - 2,028 (2,028/2,028)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, nucl 6, cysk 5, pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002044)
HIX0002044
HIT000492068
(
AK297444
)
(F-box only protein 11; Vitiligo-associated protein 1; VIT-1;)
genome : 48,034,776 - 48,132,906 (98,131)
query : 1 - 2,106 (2,106/2,106)
15 exons
identity = 0.996
3'(0.996;0.943;1.000;1.000;0.993;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001810 : F-box domain
IPR006626 : Parallel beta-helix repeat
IPR006633 : Carbohydrate-binding/sugar hydrolysis domain
IPR007742 : Periplasmic copper-binding protein NosD, beta helix domain
IPR011050 : Pectin lyase fold/virulence factor
IPR012334 : Pectin lyase fold
IPR022441 : Parallel beta-helix repeat-2
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 13.5, mito 8, cyto 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002044)
HIX0002044
HIT000498764
(
AK304140
)
(F-box only protein 11; Vitiligo-associated protein 1; VIT-1;)
genome : 48,034,911 - 48,115,847 (80,937)
query : 1 - 2,907 (2,907/2,907)
23 exons
identity = 0.998
3'(0.998;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.947)5'
coverage = 1.000
InterPro :
IPR001810 : F-box domain
IPR003126 : Zinc finger, N-recognin
IPR006626 : Parallel beta-helix repeat
IPR006633 : Carbohydrate-binding/sugar hydrolysis domain
IPR007742 : Periplasmic copper-binding protein NosD, beta helix domain
IPR011050 : Pectin lyase fold/virulence factor
IPR012334 : Pectin lyase fold
IPR022441 : Parallel beta-helix repeat-2
GO :
0004842 : Molecular Function : ubiquitin-protein transferase activity
0005515 : Molecular Function : protein binding
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20.5, cyto_nucl 13.5, nucl 5.5, pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002044)
HIX0002044
HIT000425674
(
AK292877
)
(F-box only protein 11; Vitiligo-associated protein 1; VIT-1;)
genome : 48,035,198 - 48,132,771 (97,574)
query : 1 - 2,755 (2,755/2,755)
23 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR001810 : F-box domain
IPR003126 : Zinc finger, N-recognin
IPR006626 : Parallel beta-helix repeat
IPR006633 : Carbohydrate-binding/sugar hydrolysis domain
IPR007742 : Periplasmic copper-binding protein NosD, beta helix domain
IPR011050 : Pectin lyase fold/virulence factor
IPR012334 : Pectin lyase fold
IPR022441 : Parallel beta-helix repeat-2
GO :
0004842 : Molecular Function : ubiquitin-protein transferase activity
0005515 : Molecular Function : protein binding
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 18.1667, nucl 14.5, cyto 14.5,
cyto_mito 8.66667, cyto_plas 8.66667
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002044)
HIX0002044
HIT000331372
(
AK223592
)
(F-box only protein 11; Vitiligo-associated protein 1; VIT-1;)
genome : 48,035,207 - 48,132,816 (97,610)
query : 1 - 2,791 (2,791/2,791)
23 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.992;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR001810 : F-box domain
IPR003126 : Zinc finger, N-recognin
IPR006626 : Parallel beta-helix repeat
IPR006633 : Carbohydrate-binding/sugar hydrolysis domain
IPR011050 : Pectin lyase fold/virulence factor
IPR012334 : Pectin lyase fold
IPR022441 : Parallel beta-helix repeat-2
GO :
0004842 : Molecular Function : ubiquitin-protein transferase activity
0005515 : Molecular Function : protein binding
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 18.1667, nucl 14.5, cyto 14.5,
cyto_mito 8.66667, cyto_plas 8.66667
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002044)
HIX0002044
HIT000332393
(
AY827075
)
(F-box only protein 11; Vitiligo-associated protein 1; VIT-1;)
genome : 48,035,257 - 48,132,859 (97,603)
query : 1 - 2,784 (2,784/2,784)
23 exons
identity = 1.000
3'(0.992;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR001810 : F-box domain
IPR003126 : Zinc finger, N-recognin
IPR006626 : Parallel beta-helix repeat
IPR006633 : Carbohydrate-binding/sugar hydrolysis domain
IPR011050 : Pectin lyase fold/virulence factor
IPR012334 : Pectin lyase fold
IPR022441 : Parallel beta-helix repeat-2
GO :
0004842 : Molecular Function : ubiquitin-protein transferase activity
0005515 : Molecular Function : protein binding
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 13.5, cyto 8.5, cyto_mito 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002044)
HIX0002044
HIT000433974
(
AK315108
)
(F-box only protein 11 isoform 1.)
genome : 48,035,257 - 48,115,858 (80,602)
query : 1 - 2,646 (2,646/2,646)
23 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.992;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR001810 : F-box domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13, extr 9, cyto 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002044)
HIX0002044
HIT000575353 (
ENST00000470899
)
(F-box only protein 11; Vitiligo-associated protein 1; VIT-1;)
genome : 48,036,369 - 48,041,437 (5,069)
query : 1 - 908 (908/908)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, cyto_nucl 12, nucl 9.5, mito 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002044)
HIX0002044
HIT000597377 (
ENST00000493962
)
(F-box only protein 11; Vitiligo-associated protein 1; VIT-1;)
genome : 48,039,988 - 48,063,101 (23,114)
query : 1 - 1,986 (1,986/1,986)
14 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16.6667, nucl 15, cyto 12,
cyto_mito 7.33333, cyto_plas 7.33333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002044)
HIX0002044
HIT000006009
(
AK022735
)
(F-box only protein 11; Vitiligo-associated protein 1; VIT-1;)
genome : 48,039,990 - 48,063,101 (23,112)
query : 2 - 1,985 (1,984/1,985)
14 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.989)5'
coverage = 0.999
InterPro :
IPR006626 : Parallel beta-helix repeat
IPR006633 : Carbohydrate-binding/sugar hydrolysis domain
IPR007742 : Periplasmic copper-binding protein NosD, beta helix domain
IPR011050 : Pectin lyase fold/virulence factor
IPR012334 : Pectin lyase fold
IPR022441 : Parallel beta-helix repeat-2
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16.6667, nucl 15, cyto 12,
cyto_mito 7.33333, cyto_plas 7.33333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002044)
HIX0002044
HIT000078229
(
AF351618
)
(F-box only protein 11; Vitiligo-associated protein 1; VIT-1;)
genome : 48,045,556 - 48,132,707 (87,152)
query : 27 - 2,243 (2,217/2,243)
16 exons
identity = 0.999
3'(1.000;1.000;0.989;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.988;
1.000)5'
coverage = 0.988
InterPro :
IPR001810 : F-box domain
IPR006626 : Parallel beta-helix repeat
IPR006633 : Carbohydrate-binding/sugar hydrolysis domain
IPR007742 : Periplasmic copper-binding protein NosD, beta helix domain
IPR011050 : Pectin lyase fold/virulence factor
IPR012334 : Pectin lyase fold
IPR022441 : Parallel beta-helix repeat-2
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 17.3333, cyto_plas 10.1667,
nucl 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002044)
HIX0002044
HIT000595718 (
ENST00000492225
)
(F-box only protein 11; Vitiligo-associated protein 1; VIT-1;)
genome : 48,045,556 - 48,132,707 (87,152)
query : 1 - 2,216 (2,216/2,216)
16 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 17.3333, cyto_plas 10.1667,
nucl 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002044)
HIX0002044
HIT000522097 (
ENST00000424163
)
(F-box only protein 11; Vitiligo-associated protein 1; VIT-1;)
genome : 48,063,054 - 48,132,349 (69,296)
query : 1 - 560 (560/560)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 10, nucl 10, cyto 8, mito 4, cyto_pero 4,
cyto_plas 4, cyto_golg 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002044)
HIX0002044
HIT000584076 (
ENST00000480038
)
(Conserved hypothetical protein.)
genome : 48,063,091 - 48,115,858 (52,768)
query : 1 - 600 (600/600)
6 exons
identity = 0.992
3'(1.000;1.000;1.000;1.000;0.953)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, cyto 8.5, cyto_nucl 7, nucl 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002044)
HIX0002044
HIT000072609
(
AF174599
)
(F-box only protein 11; Vitiligo-associated protein 1; VIT-1;)
genome : 48,063,092 - 48,132,814 (69,723)
query : 1 - 591 (591/591)
5 exons
identity = 0.997
3'(1.000;0.986;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001810 : F-box domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto 6, mito 3, cyto_pero 3, cyto_plas 3,
cyto_golg 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0002044)
AC016696.8
46500001-46550750 F +
NCBI
AC016912.7
46550751-46692746 F +
NCBI
AC018682.4
46692747-46873951 F +
NCBI
AC020604.9
46873952-47004257 F +
NCBI
AC016722.9
47004258-47152252 F +
NCBI
AC093732.3
47152253-47285461 F +
NCBI
AC073283.8
47285462-47463182 F +
NCBI
AC106869.1
47463183-47530156 F +
NCBI
AC108207.3
47530157-47532150 F +
NCBI
AC079775.6
47532151-47702137 F +
NCBI
AC138655.1
47702138-47839287 F +
NCBI
AC079250.7
47839288-47920230 F +
NCBI
AC006509.15
47920231-48042249 F -
NCBI
AC079807.5
48042250-48100000 F +
NCBI