bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0163105
HIT000548224 (
ENST00000450290
)
(Hypothetical short protein.)
genome : 80,926,513 - 81,097,315 (170,803)
query : 1 - 769 (769/769)
5 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, cyto_mito 6, cyto 5.5, mito 3.5, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0163105)
HIX0204043
HIT000449201_07
(
DQ582670
)
Representative transcript
(Non-protein coding transcript.)
genome : 81,106,498 - 81,106,525 (28)
query : 1 - 28 (28/30)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 0.933
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0204043)
HIX0161939
HIT000359614 (
ENST00000378334
)
(Conserved hypothetical protein.)
genome : 81,421,461 - 81,428,308 (6,848)
query : 1 - 6,848 (6,848/6,848)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23.5, cyto_nucl 14, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0161939)
HIX0162770
HIT000534483 (
ENST00000436549
)
(Snf7 family protein.)
genome : 81,645,847 - 81,646,426 (580)
query : 1 - 580 (580/580)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 22.5, cyto_nucl 12.5, extr 4, pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0162770)
HIX0163020
HIT000544514 (
ENST00000446580
)
(Hypothetical short protein.)
genome : 81,689,819 - 81,694,070 (4,252)
query : 1 - 520 (520/520)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0163020)
HIX0029869
HIT000082477
(
AK075442
)
Representative transcript
(Hypothetical protein.)
genome : 81,809,823 - 81,811,720 (1,898)
query : 1 - 1,898 (1,898/1,898)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0029869)
Ortholog candidate ( ->
Evola
)
Pan
sp. (Chimpanzee) : ENSPTRT00000058826
HIX0029869
HIT000390983
(
BC132932
)
(Conserved hypothetical protein.)
genome : 81,809,989 - 81,810,843 (855)
query : 1 - 855 (855/855)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0029869)
HIX0029869
HIT000390985
(
BC132934
)
(Conserved hypothetical protein.)
genome : 81,809,989 - 81,810,843 (855)
query : 1 - 855 (855/855)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0029869)
HIX0162530
HIT000524644 (
ENST00000426710
)
(Hypothetical protein.)
genome : 81,893,601 - 81,893,852 (252)
query : 1 - 252 (252/252)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 21, cyto_nucl 5.5, nucl 5, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0162530)
HIX0163257
HIT000553779 (
ENST00000455845
)
(Conserved hypothetical protein.)
genome : 82,210,396 - 82,232,824 (22,429)
query : 1 - 488 (488/488)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, mito 4, cyto_nucl 4, nucl 3, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0163257)
HIX0030392
HIT000098665
(
BC047563
)
Representative transcript
(Conserved hypothetical protein.)
genome : 82,293,359 - 82,294,436 (1,078)
query : 5 - 1,082 (1,078/1,097)
1 exon
identity = 0.996
3'(0.996)5'
coverage = 0.996
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, cyto 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030392)
HIX0162782
HIT000534911 (
ENST00000436977
)
(Conserved hypothetical protein.)
genome : 82,495,551 - 82,497,051 (1,501)
query : 1 - 1,501 (1,501/1,501)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0162782)
AC012355.10
81000001-81073279 F +
NCBI
AC107215.4
81073280-81089333 F +
NCBI
AC084193.5
81089334-81273004 F +
NCBI
AC084297.3
81273005-81383296 F +
NCBI
AC105342.3
81383297-81465445 F +
NCBI
AC079997.6
81465446-81582022 F +
NCBI
AC012075.10
81582023-81765459 F +
NCBI
AC013262.7
81765460-81910018 F +
NCBI
AC079246.2
81910019-82007958 F +
NCBI
AC105419.2
82007959-82119510 F +
NCBI
AC069151.6
82119511-82157204 F +
NCBI
AC079896.6
82157205-82289993 F +
NCBI
AC010985.8
82289994-82484013 F +
NCBI
AC105761.5
82484014-82566847 F +
NCBI
AC010105.12
82566848-82600000 F +
NCBI