bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0015964
HIT000204647 (
NM_014258
)
(Synaptonemal complex protein 2; SCP-2; Synaptonemal complex lateral element protein; hsSCP2;)
genome : 58,438,618 - 58,507,209 (68,592)
query : 1 - 5,480 (5,480/5,497)
44 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto 11
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015964)
HIX0015964
HIT000311388 (
ENST00000357552
)
(Synaptonemal complex protein 2; SCP-2; Synaptonemal complex lateral element protein; hsSCP2;)
genome : 58,438,618 - 58,508,710 (70,093)
query : 1 - 5,567 (5,567/5,567)
45 exons
identity = 0.999
3'(1.000;0.956)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto 11
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015964)
HIX0015964
HIT000352281 (
ENST00000371001
)
(Synaptonemal complex protein 2; SCP-2; Synaptonemal complex lateral element protein; hsSCP2;)
genome : 58,438,621 - 58,507,209 (68,589)
query : 1 - 5,477 (5,477/5,477)
44 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto 11
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015964)
HIX0015964
HIT000390917
(
BC132864
)
Representative transcript
(Synaptonemal complex protein 2; SCP-2; Synaptonemal complex lateral element protein; hsSCP2;)
genome : 58,438,924 - 58,507,173 (68,250)
query : 1 - 5,138 (5,138/5,138)
44 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
InterPro :
IPR024832 : Synaptonemal complex protein 2
IPR024835 : Synaptonemal complex protein 2/protein 2-like
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto 11
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015964)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : DQ103262
Bos
sp. (Cow) : EF177469
Canis
sp. (Dog) : ENSCAFT00000019553
Gallus
sp. (Chicken) : ENSGALT00000007790
Monodelphis
sp. (Opossum) : ENSMODT00000030732
Pongo
sp. (Orangutan) : ENSPPYT00000012990
Pan
sp. (Chimpanzee) : ENSPTRT00000044321
Equus
sp. (Horse) : XM_001915153
Danio
sp. (Zebrafish) : XM_679956
Rattus
sp. (Rat) : Y08981
HIX0015964
HIT000390923
(
BC132870
)
(Synaptonemal complex protein 2; SCP-2; Synaptonemal complex lateral element protein; hsSCP2;)
genome : 58,438,924 - 58,507,173 (68,250)
query : 1 - 5,140 (5,140/5,140)
44 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
InterPro :
IPR024832 : Synaptonemal complex protein 2
IPR024835 : Synaptonemal complex protein 2/protein 2-like
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto 11
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015964)
HIX0015964
HIT000057755
(
BX649108
)
(Synaptonemal complex protein 2; SCP-2; Synaptonemal complex lateral element protein; hsSCP2;)
genome : 58,439,048 - 58,508,697 (69,650)
query : 2 - 5,123 (5,122/5,149)
45 exons
identity = 0.998
3'(1.000;0.949)5'
coverage = 1.000
InterPro :
IPR024832 : Synaptonemal complex protein 2
IPR024835 : Synaptonemal complex protein 2/protein 2-like
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto 11
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015964)
HIX0015964
HIT000056738
(
BX648091
)
(Synaptonemal complex protein 2; SCP-2; Synaptonemal complex lateral element protein; hsSCP2;)
genome : 58,439,035 - 58,508,672 (69,638)
query : 2 - 5,109 (5,108/5,119)
45 exons
identity = 0.998
3'(1.000;0.887)5'
coverage = 0.998
InterPro :
IPR024832 : Synaptonemal complex protein 2
IPR024835 : Synaptonemal complex protein 2/protein 2-like
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto 11
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015964)
HIX0015964
HIT000096226
(
BC040566
)
(Synaptonemal complex protein 2; SCP-2; Synaptonemal complex lateral element protein; hsSCP2;)
genome : 58,452,532 - 58,508,416 (55,885)
query : 1 - 3,328 (3,328/3,343)
33 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
InterPro :
IPR024832 : Synaptonemal complex protein 2
IPR024835 : Synaptonemal complex protein 2/protein 2-like
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto_nucl 16, cyto 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015964)
HIX0015964
HIT000544768 (
ENST00000446834
)
(Synaptonemal complex protein 2; SCP-2; Synaptonemal complex lateral element protein; hsSCP2;)
genome : 58,452,519 - 58,508,416 (55,898)
query : 1 - 3,341 (3,341/3,341)
33 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto_nucl 16, cyto 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015964)
HIX0015964
HIT000435590
(
BC146798
)
(Synaptonemal complex protein 2; SCP-2; Synaptonemal complex lateral element protein; hsSCP2;)
genome : 58,467,055 - 58,508,709 (41,655)
query : 1 - 2,576 (2,576/2,602)
24 exons
identity = 0.998
3'(1.000;0.956)5'
coverage = 1.000
InterPro :
IPR024832 : Synaptonemal complex protein 2
IPR024835 : Synaptonemal complex protein 2/protein 2-like
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 15.5, cyto 9.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015964)
HIX0015964
HIT000523865 (
ENST00000425931
)
(Synaptonemal complex protein 2; SCP-2; Synaptonemal complex lateral element protein; hsSCP2;)
genome : 58,494,592 - 58,508,710 (14,119)
query : 1 - 488 (488/488)
5 exons
identity = 0.992
3'(0.956)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, cyto 4, mito 3, cyto_nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015964)
HIX0203045
HIT000312019 (
ENST00000358293
)
(Protein FAM217B;)
genome : 58,508,819 - 58,523,735 (14,917)
query : 1 - 5,152 (5,152/5,152)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31.5, cyto_nucl 16.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0203045)
HIX0203045
HIT000655685 (
NM_001190826
)
(Protein FAM217B;)
genome : 58,508,819 - 58,523,702 (14,884)
query : 1 - 5,119 (5,119/5,119)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31.5, cyto_nucl 16.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0203045)
HIX0203045
HIT000044946
(
AK125073
)
Representative transcript
(Protein FAM217B;)
genome : 58,508,819 - 58,522,559 (13,741)
query : 1 - 3,977 (3,977/3,977)
5 exons
identity = 0.999
5'(1.000;0.992;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR029266 : FAM217 family
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31.5, cyto_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0203045)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK155442
Gallus
sp. (Chicken) : ENSGALT00000035362
Oryzias
sp. (Medaka) : ENSORLT00000006139
Pongo
sp. (Orangutan) : ENSPPYT00000012992
Pan
sp. (Chimpanzee) : ENSPTRT00000047598
Rattus
sp. (Rat) : XM_001060199
Monodelphis
sp. (Opossum) : XM_001377230
Equus
sp. (Horse) : XM_001490535
Bos
sp. (Cow) : XM_583423
Danio
sp. (Zebrafish) : XM_680146
Canis
sp. (Dog) : XM_849777
Macaca
sp. (Macaque) : XR_014469
HIX0027690
HIT000055945
(
BX647298
)
(Hypothetical short protein.)
genome : 58,511,717 - 58,513,615 (1,899)
query : 1 - 1,897 (1,897/1,916)
1 exon
identity = 0.998
3'(0.998)5'
coverage = 0.999
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 14.5, cyto_mito 9.33333, plas 8, mito 3,
E.R._mito 2.83333, nucl 2, golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027690)
HIX0027690
HIT000053147
(
BC047502
)
(Protein phosphatase 1 regulatory subunit 3D; Protein phosphatase 1 regulatory subunit 6; PP1 subunit R6; Protein phosphatase 1-binding subunit R6;)
genome : 58,511,887 - 58,515,352 (3,466)
query : 1 - 3,466 (3,466/3,481)
1 exon
identity = 0.997
3'(0.997)5'
coverage = 1.000
InterPro :
IPR005036 : Putative phosphatase regulatory subunit
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 16, cyto_nucl 7.16667, extr 5, nucl 5, cyto 5,
cyto_pero 4.33333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027690)
HIX0027690
HIT000202849 (
NM_006242
)
(Protein phosphatase 1 regulatory subunit 3D; Protein phosphatase 1 regulatory subunit 6; PP1 subunit R6; Protein phosphatase 1-binding subunit R6;)
genome : 58,511,887 - 58,515,352 (3,466)
query : 1 - 3,466 (3,466/3,481)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
EC number :
EC 3.1.3.16
KEGG pathway :
04660 : T cell receptor signaling pathway (2)
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17, cyto_nucl 6.16667, extr 5, nucl 4.5,
cyto 4.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027690)
HIX0027690
HIT000352276 (
ENST00000370996
)
(Protein phosphatase 1 regulatory subunit 3D; Protein phosphatase 1 regulatory subunit 6; PP1 subunit R6; Protein phosphatase 1-binding subunit R6;)
genome : 58,511,894 - 58,515,352 (3,459)
query : 1 - 3,459 (3,459/3,459)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17, cyto_nucl 6.16667, extr 5, nucl 4.5,
cyto 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027690)
HIX0027690
HIT000326072
(
Y18206
)
Representative transcript
(Protein phosphatase 1 regulatory subunit 3D; Protein phosphatase 1 regulatory subunit 6; PP1 subunit R6; Protein phosphatase 1-binding subunit R6;)
genome : 58,513,635 - 58,515,223 (1,589)
query : 41 - 1,627 (1,587/1,627)
1 exon
identity = 0.997
3'(0.997)5'
coverage = 1.000
EC number :
EC 3.1.3.16
KEGG pathway :
04660 : T cell receptor signaling pathway (2)
InterPro :
IPR005036 : Putative phosphatase regulatory subunit
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17, cyto_nucl 6.16667, extr 5, nucl 4.5,
cyto 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027690)
Ortholog candidate ( ->
Evola
)
Gallus
sp. (Chicken) : BX929987
Pongo
sp. (Orangutan) : ENSPPYT00000012991
Pan
sp. (Chimpanzee) : ENSPTRT00000025516
Rattus
sp. (Rat) : XM_001060320
Macaca
sp. (Macaque) : XM_001090753
Bos
sp. (Cow) : XM_001250296
Monodelphis
sp. (Opossum) : XM_001377241
Canis
sp. (Dog) : XM_543078
Danio
sp. (Zebrafish) : XM_690668
HIX0027690
HIT000265367
(
BC074860
)
(Protein phosphatase 1 regulatory subunit 3D; Protein phosphatase 1 regulatory subunit 6; PP1 subunit R6; Protein phosphatase 1-binding subunit R6;)
genome : 58,514,043 - 58,515,033 (991)
query : 1 - 991 (991/991)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
InterPro :
IPR005036 : Putative phosphatase regulatory subunit
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17, cyto_nucl 6.16667, extr 5, nucl 4.5,
cyto 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027690)
HIX0027690
HIT000265368
(
BC074861
)
(Protein phosphatase 1 regulatory subunit 3D; Protein phosphatase 1 regulatory subunit 6; PP1 subunit R6; Protein phosphatase 1-binding subunit R6;)
genome : 58,514,043 - 58,515,033 (991)
query : 1 - 991 (991/991)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
InterPro :
IPR005036 : Putative phosphatase regulatory subunit
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17, cyto_nucl 6.16667, extr 5, nucl 4.5,
cyto 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0027690)
HIX0203045
HIT000317555 (
NM_022106
)
(Protein FAM217B;)
genome : 58,515,444 - 58,523,702 (8,259)
query : 1 - 5,053 (5,053/5,053)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31.5, cyto_nucl 16.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0203045)
HIX0203045
HIT000655686 (
NM_001190827
)
(Protein FAM217B isoform 2.)
genome : 58,515,444 - 58,523,702 (8,259)
query : 1 - 4,597 (4,597/4,597)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23, cyto 7
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0203045)
HIX0203045
HIT000498844
(
AK304220
)
(Protein FAM217B isoform 2.)
genome : 58,515,444 - 58,520,182 (4,739)
query : 1 - 1,077 (1,077/1,077)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR029266 : FAM217 family
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23, cyto 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0203045)
HIX0203045
HIT000314135 (
ENST00000360816
)
(Protein FAM217B;)
genome : 58,515,494 - 58,523,735 (8,242)
query : 1 - 5,036 (5,036/5,036)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31.5, cyto_nucl 16.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0203045)
HIX0203045
HIT000573620 (
ENST00000469084
)
(Protein FAM217B isoform 2.)
genome : 58,515,514 - 58,520,055 (4,542)
query : 1 - 880 (880/880)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18.5, cyto_nucl 14.5, cyto 9.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0203045)
HIX0203045
HIT000090238
(
BC020771
)
(Protein FAM217B isoform 1.)
genome : 58,515,525 - 58,520,096 (4,572)
query : 1 - 1,366 (1,366/1,396)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 0.999
InterPro :
IPR029266 : FAM217 family
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31.5, cyto_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0203045)
HIX0203045
HIT000054042
(
BC054002
)
(Protein FAM217B;)
genome : 58,515,556 - 58,522,560 (7,005)
query : 1 - 3,799 (3,799/3,825)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR029266 : FAM217 family
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31.5, cyto_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0203045)
HIX0203045
HIT000519026 (
ENST00000421092
)
(Protein FAM217B isoform 1.)
genome : 58,517,179 - 58,519,141 (1,963)
query : 1 - 419 (419/419)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, mito 4, extr 3, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0203045)
HIX0203045
HIT000025730
(
AL137442
)
(Protein FAM217B isoform 2.)
genome : 58,519,202 - 58,523,093 (3,892)
query : 3 - 3,894 (3,892/3,913)
1 exon
identity = 0.998
5'(0.998)3'
coverage = 0.999
InterPro :
IPR029266 : FAM217 family
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, cyto 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0203045)
HIX0203045
HIT000015075
(
AK074295
)
(Conserved hypothetical protein.)
genome : 58,520,773 - 58,523,093 (2,321)
query : 1 - 2,323 (2,323/2,350)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14, extr 11, cyto 5.5, extr_plas 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0203045)
HIX0015966
HIT000105359 (
ENST00000244047
)
(Cadherin-like protein 26 isoform a precursor.)
genome : 58,533,471 - 58,608,731 (75,261)
query : 1 - 2,870 (2,870/2,870)
17 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 10.5, extr_plas 8, E.R._golg 7, E.R. 6.5,
golg 6.5, plas 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015966)
HIX0015966
HIT000215524 (
NM_177980
)
(Cadherin-like protein 26 isoform a precursor.)
genome : 58,533,471 - 58,588,168 (54,698)
query : 1 - 3,193 (3,193/3,193)
18 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 16, extr_plas 12, plas 6, lyso 4, golg 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015966)
HIX0015966
HIT000307652 (
ENST00000348616
)
(Cadherin-like protein 26 isoform a precursor.)
genome : 58,533,482 - 58,588,168 (54,687)
query : 1 - 3,182 (3,182/3,182)
18 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 16, extr_plas 12, plas 6, lyso 4, golg 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015966)
HIX0015966
HIT000011816
(
AK055202
)
Representative transcript
(Cadherin-like protein 26 isoform a precursor.)
genome : 58,533,482 - 58,588,167 (54,686)
query : 1 - 3,180 (3,180/3,180)
18 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.997)3'
coverage = 1.000
InterPro :
IPR002126 : Cadherin
IPR015919 : Cadherin-like
IPR020894 : Cadherin conserved site
GO :
0005509 : Molecular Function : calcium ion binding
0005886 : Cellular Component : plasma membrane
0007155 : Biological Process : cell adhesion
0007156 : Biological Process : homophilic cell adhesion
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 16, extr_plas 12, plas 6, lyso 4, golg 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015966)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : BC053928
Macaca
sp. (Macaque) : ENSMMUT00000011351
Pongo
sp. (Orangutan) : ENSPPYT00000012993
Pan
sp. (Chimpanzee) : ENSPTRT00000025521
Tetraodon
sp. (Tetraodon) : GSTENT00023708001
Takifugu
sp. (Fugu) : SINFRUT00000181895
Monodelphis
sp. (Opossum) : XM_001377207
Equus
sp. (Horse) : XM_001914943
Rattus
sp. (Rat) : XM_230942
Canis
sp. (Dog) : XM_543079
Danio
sp. (Zebrafish) : XM_695420
Bos
sp. (Cow) : XM_869285
HIX0015966
HIT000500337
(
BC136306
)
(Cadherin-like protein 26 isoform a precursor.)
genome : 58,533,685 - 58,588,127 (54,443)
query : 1 - 3,135 (3,135/3,135)
18 exons
identity = 1.000
5'(1.000;1.000;0.992;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR002126 : Cadherin
IPR015919 : Cadherin-like
IPR020894 : Cadherin conserved site
GO :
0005509 : Molecular Function : calcium ion binding
0005886 : Cellular Component : plasma membrane
0007155 : Biological Process : cell adhesion
0007156 : Biological Process : homophilic cell adhesion
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15, extr_plas 11.5, plas 6, lyso 4, golg 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015966)
HIX0015966
HIT000502370
(
BC143931
)
(Cadherin-like protein 26 isoform a precursor.)
genome : 58,533,685 - 58,588,127 (54,443)
query : 1 - 3,135 (3,135/3,135)
18 exons
identity = 1.000
5'(1.000;1.000;0.992;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR002126 : Cadherin
IPR015919 : Cadherin-like
IPR020894 : Cadherin conserved site
GO :
0005509 : Molecular Function : calcium ion binding
0005886 : Cellular Component : plasma membrane
0007155 : Biological Process : cell adhesion
0007156 : Biological Process : homophilic cell adhesion
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15, extr_plas 11.5, plas 6, lyso 4, golg 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015966)
HIX0015966
HIT000581220 (
ENST00000477058
)
(Cadherin-like protein 26 isoform a precursor.)
genome : 58,561,069 - 58,564,208 (3,140)
query : 1 - 597 (597/597)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 12, cyto_nucl 9, nucl 8.5, cyto 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015966)
HIX0015966
HIT000072354
(
AF169690
)
(Cadherin-like protein 26 isoform a precursor.)
genome : 58,564,161 - 58,609,066 (44,906)
query : 1 - 1,681 (1,681/1,681)
9 exons
identity = 0.992
5'(1.000;0.993;1.000;1.000;1.000;1.000;1.000;
1.000;0.978)3'
coverage = 1.000
InterPro :
IPR002126 : Cadherin
IPR015919 : Cadherin-like
IPR020894 : Cadherin conserved site
GO :
0005509 : Molecular Function : calcium ion binding
0005886 : Cellular Component : plasma membrane
0007155 : Biological Process : cell adhesion
0007156 : Biological Process : homophilic cell adhesion
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 12, cyto_nucl 8.83333, cyto_mito 8.83333, plas 5,
nucl 4.5, mito 4.5, pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015966)
HIX0015966
HIT000352271 (
ENST00000370991
)
(Cadherin-like protein 26 isoform a precursor.)
genome : 58,564,161 - 58,609,066 (44,906)
query : 1 - 1,669 (1,669/1,669)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 11, cyto_nucl 8.33333, cyto_mito 8.33333, plas 5,
pero 5, nucl 4.5, mito 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015966)
HIX0015966
HIT000600879 (
ENST00000497614
)
(Cadherin-like protein 26 isoform b.)
genome : 58,569,263 - 58,588,168 (18,906)
query : 1 - 1,429 (1,429/1,429)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 13, nucl 7, cyto_golg 7, plas 4, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015966)
HIX0015966
HIT000260482
(
BC062570
)
(Cadherin-like protein 26 isoform b.)
genome : 58,571,417 - 58,589,134 (17,718)
query : 1 - 1,932 (1,932/1,990)
4 exons
identity = 0.998
5'(1.000;1.000;1.000;0.998)3'
coverage = 0.999
InterPro :
IPR000233 : Cadherin, cytoplasmic domain
IPR027397 : Catenin binding domain
GO :
0005509 : Molecular Function : calcium ion binding
0007156 : Biological Process : homophilic cell adhesion
0016020 : Cellular Component : membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, nucl 7, cyto 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015966)
HIX0015966
HIT000208430 (
NM_021810
)
(Cadherin-like protein 26 isoform b.)
genome : 58,571,417 - 58,588,168 (16,752)
query : 1 - 1,090 (1,090/1,090)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, nucl 9, extr_plas 9
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015966)
HIX0015966
HIT000105361 (
ENST00000244049
)
(Cadherin-like protein 26 isoform b.)
genome : 58,571,419 - 58,589,134 (17,716)
query : 1 - 1,931 (1,931/1,931)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, nucl 7, cyto 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015966)
HIX0015966
HIT000015257
(
AK074477
)
(Cadherin-like protein 26 isoform b.)
genome : 58,571,429 - 58,589,584 (18,156)
query : 1 - 2,495 (2,495/2,508)
6 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR000233 : Cadherin, cytoplasmic domain
IPR027397 : Catenin binding domain
GO :
0005509 : Molecular Function : calcium ion binding
0007156 : Biological Process : homophilic cell adhesion
0016020 : Cellular Component : membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, nucl 9, extr_plas 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015966)
HIX0015966
HIT000308003 (
ENST00000350849
)
(Cadherin-like protein 26 isoform b.)
genome : 58,571,429 - 58,589,584 (18,156)
query : 1 - 2,494 (2,494/2,494)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, nucl 9, extr_plas 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015966)
HIX0015966
HIT000554040 (
ENST00000456106
)
(Cadherin-like protein 26 isoform b.)
genome : 58,571,449 - 58,581,842 (10,394)
query : 1 - 402 (402/418)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 0.962
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, cyto_nucl 10, mito 9, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015966)
HIX0015967
HIT000016046
(
AK091179
)
Representative transcript
(Conserved hypothetical protein.)
genome : 58,630,980 - 58,648,008 (17,029)
query : 1 - 2,732 (2,732/2,732)
4 exons
identity = 1.000
5'(1.000;1.000;0.995;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15, cyto 12, nucl 10, extr 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015967)
Ortholog candidate ( ->
Evola
)
Pongo
sp. (Orangutan) : ENSPPYT00000012996
Pan
sp. (Chimpanzee) : ENSPTRT00000025523
HIX0015967
HIT000119738 (
ENST00000313426
)
(Conserved hypothetical protein.)
genome : 58,630,980 - 58,648,008 (17,029)
query : 1 - 2,732 (2,732/2,732)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15, cyto 12, nucl 10, extr 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015967)
HIX0015967
HIT000215021 (
NM_173644
)
(Conserved hypothetical protein.)
genome : 58,630,980 - 58,648,008 (17,029)
query : 1 - 2,732 (2,732/2,732)
4 exons
identity = 1.000
5'(1.000;1.000;0.995;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15, cyto 12, nucl 10, extr 7
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015967)
HIX0015967
HIT000336731
(
BC101349
)
(Conserved hypothetical protein.)
genome : 58,634,012 - 58,647,227 (13,216)
query : 1 - 1,817 (1,817/1,817)
3 exons
identity = 0.999
5'(1.000;0.995;0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15, cyto 12, nucl 10, extr 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015967)
HIX0015967
HIT000336732
(
BC101350
)
(Conserved hypothetical protein.)
genome : 58,634,012 - 58,647,227 (13,216)
query : 1 - 1,426 (1,426/1,426)
3 exons
identity = 0.999
5'(1.000;0.995;0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 16, nucl 14, cyto_nucl 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015967)
HIX0015967
HIT000336733
(
BC101351
)
(Conserved hypothetical protein.)
genome : 58,634,012 - 58,647,227 (13,216)
query : 1 - 1,817 (1,817/1,817)
3 exons
identity = 0.999
5'(1.000;0.995;0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15, cyto 12, nucl 10, extr 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015967)
HIX0015967
HIT000088956
(
BC016338
)
(Hypothetical short protein.)
genome : 58,642,730 - 58,643,706 (977)
query : 4 - 980 (977/1,010)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 0.995
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, extr 13, cyto_nucl 8.5, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015967)
HIX0015967
HIT000252583
(
AY358539
)
(Conserved hypothetical protein.)
genome : 58,643,568 - 58,648,007 (4,440)
query : 1 - 4,440 (4,440/4,440)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15, cyto 12, nucl 10, extr 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0015967)
HIX0138130
HIT000443609
(
DQ577078
)
Representative transcript
(Non-protein coding transcript.)
genome : 58,661,763 - 58,661,793 (31)
query : 1 - 31 (31/31)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0138130)
HIX0020515
HIT000524687 (
ENST00000426753
)
(Hypothetical short protein.)
genome : 58,662,895 - 58,676,427 (13,533)
query : 1 - 651 (651/651)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 13.5, cyto_mito 10.5, extr 10, cyto 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020515)
HIX0020515
HIT000526706 (
ENST00000428772
)
(Non-protein coding transcript.)
genome : 58,662,912 - 58,676,427 (13,516)
query : 1 - 471 (471/471)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020515)
HIX0020515
HIT000529115 (
ENST00000431181
)
(Non-protein coding transcript.)
genome : 58,662,919 - 58,821,187 (158,269)
query : 1 - 858 (858/858)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020515)
HIX0020515
HIT000525625 (
ENST00000427691
)
(Conserved hypothetical protein.)
genome : 58,662,943 - 58,755,971 (93,029)
query : 1 - 534 (534/534)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12, extr 11, nucl 5, mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020515)
HIX0020515
HIT000537441 (
ENST00000439507
)
(Non-protein coding transcript.)
genome : 58,663,003 - 58,676,427 (13,425)
query : 1 - 415 (415/415)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020515)
HIX0020515
HIT000555442 (
ENST00000457508
)
(Non-protein coding transcript.)
genome : 58,663,694 - 58,676,427 (12,734)
query : 1 - 445 (445/445)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020515)
HIX0020515
HIT000556356 (
ENST00000458422
)
(Conserved hypothetical protein.)
genome : 58,696,116 - 58,859,671 (163,556)
query : 1 - 373 (373/373)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, nucl 10, cyto 7, extr_plas 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020515)
HIX0020515
HIT000428084
(
AK309218
)
Representative transcript
(PDZ and LIM domain protein 5 isoform i.)
genome : 58,713,537 - 59,226,137 (512,601)
query : 1 - 846 (846/846)
5 exons
identity = 0.998
5'(1.000;1.000;1.000;0.993;0.997)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, extr 12, cyto_nucl 10.5, cyto 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020515)
HIX0020515
HIT000017672
(
AK092805
)
(Conserved hypothetical protein.)
genome : 58,713,548 - 58,897,314 (183,767)
query : 1 - 2,043 (2,043/2,043)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, nucl 14
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020515)
HIX0020515
HIT000530844 (
ENST00000432910
)
(Conserved hypothetical protein.)
genome : 58,713,548 - 58,897,314 (183,767)
query : 1 - 2,043 (2,043/2,043)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, nucl 10, cyto 3, mito 3, cyto_mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020515)
HIX0020515
HIT000726491 (
NR_046099
)
(Conserved hypothetical protein.)
genome : 58,713,548 - 58,897,314 (183,767)
query : 1 - 2,043 (2,043/2,043)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, nucl 10, cyto 3, mito 3, cyto_mito 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020515)
HIX0020515
HIT000534969 (
ENST00000437035
)
(Hypothetical short protein.)
genome : 58,755,936 - 59,102,516 (346,581)
query : 1 - 499 (499/499)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13, nucl 12, cyto 10, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020515)
HIX0020515
HIT000519191 (
ENST00000421257
)
(Hypothetical short protein.)
genome : 58,755,937 - 58,906,642 (150,706)
query : 1 - 825 (825/825)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, cyto_nucl 3.33333, cyto 3, nucl 2.5,
cyto_pero 2.33333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020515)
HIX0020515
HIT000525754 (
ENST00000427820
)
(Conserved hypothetical protein.)
genome : 58,755,946 - 58,825,060 (69,115)
query : 1 - 805 (805/805)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, nucl 9.5, cyto_nucl 9.5, cyto 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020515)
HIX0097029
HIT000389229
(
BC127251
)
Representative transcript
(Conserved hypothetical protein.)
genome : 58,883,122 - 58,883,442 (321)
query : 9 - 329 (321/334)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 0.961
SOSUI :
SOLUBLE PROTEIN
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0097029)
HIX0138324
HIT000470986 (
ENST00000385067
)
(Non-protein coding transcript.)
genome : 58,883,532 - 58,883,625 (94)
query : 1 - 94 (94/94)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0138324)
HIX0138324
HIT000658368 (
NR_030376
)
(Non-protein coding transcript.)
genome : 58,883,532 - 58,883,625 (94)
query : 1 - 94 (94/94)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0138324)
HIX0213087
HIT000048161
(
AK128288
)
Representative transcript
(Conserved hypothetical protein.)
genome : 58,892,637 - 58,899,597 (6,961)
query : 1 - 4,211 (4,211/4,211)
2 exons
identity = 0.998
3'(1.000;0.990)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, cyto 7, nucl 2, mito 2, mito_nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213087)
HIX0040688
HIT000091337
(
BC027461
)
Representative transcript
(Conserved hypothetical protein.)
genome : 58,899,899 - 58,901,205 (1,307)
query : 1 - 1,307 (1,307/1,321)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0040688)
HIX0174847
HIT000522582 (
ENST00000424648
)
(Hypothetical protein.)
genome : 58,989,454 - 58,989,930 (477)
query : 1 - 477 (477/477)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, mito 7, nucl 3.5, E.R._mito 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0174847)
HIX0226904
HIT000693842 (
ENST00000581943
)
(Non-protein coding transcript.)
genome : 59,053,169 - 59,053,239 (71)
query : 1 - 71 (71/71)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0226904)
HIX0226904
HIT000725821 (
NR_039758
)
(Non-protein coding transcript.)
genome : 59,053,169 - 59,053,239 (71)
query : 1 - 71 (71/71)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0226904)
HIX0226903
HIT000693135 (
ENST00000581228
)
(Non-protein coding transcript.)
genome : 59,139,620 - 59,139,683 (64)
query : 1 - 64 (64/64)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0226903)
HIX0226903
HIT000725716 (
NR_039653
)
(Non-protein coding transcript.)
genome : 59,139,620 - 59,139,683 (64)
query : 1 - 64 (64/64)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0226903)
HIX0020515
HIT000306161
(
CR627388
)
(Conserved hypothetical protein.)
genome : 59,205,912 - 59,228,977 (23,066)
query : 1 - 3,262 (3,262/3,280)
2 exons
identity = 0.998
5'(1.000;0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, nucl 8.5, cyto_nucl 6, mito 3, golg 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020515)
HIX0040725
HIT000097282
(
BC042560
)
Representative transcript
(Conserved hypothetical protein.)
genome : 59,387,063 - 59,389,267 (2,205)
query : 1 - 2,205 (2,205/2,220)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, mito 5, nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0040725)
HIX0040725
HIT000682019 (
ENST00000569070
)
(Conserved hypothetical protein.)
genome : 59,387,060 - 59,389,267 (2,208)
query : 1 - 2,208 (2,208/2,208)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, mito 5, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0040725)
HIX0174826
HIT000518644 (
ENST00000420710
)
(Hypothetical short protein.)
genome : 59,652,280 - 59,652,872 (593)
query : 1 - 500 (500/500)
2 exons
identity = 0.982
3'(1.000;0.924)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, cyto_nucl 5.33333, cyto 4.5, nucl 4,
cyto_pero 3.16667
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0174826)
HIX0174955
HIT000539594 (
ENST00000441660
)
(Non-protein coding transcript.)
genome : 59,654,196 - 59,655,235 (1,040)
query : 1 - 391 (391/391)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0174955)
HIX0174655
HIT000448912_04
(
DQ582381
)
Representative transcript
(Non-protein coding transcript.)
genome : 59,676,123 - 59,676,153 (31)
query : 1 - 31 (31/31)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0174655)
HIX0174655
HIT000464400_04
(
DQ597869
)
(Non-protein coding transcript.)
genome : 59,676,127 - 59,676,157 (31)
query : 1 - 31 (31/31)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0174655)
HIX0174656
HIT000448912_05
(
DQ582381
)
Representative transcript
(Non-protein coding transcript.)
genome : 59,676,347 - 59,676,377 (31)
query : 1 - 31 (31/31)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0174656)
HIX0174656
HIT000464400_05
(
DQ597869
)
(Non-protein coding transcript.)
genome : 59,676,351 - 59,676,381 (31)
query : 1 - 31 (31/31)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0174656)
HIX0138114
HIT000441260
(
DQ574729
)
Representative transcript
(Non-protein coding transcript.)
genome : 59,676,473 - 59,676,502 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0138114)
HIX0174657
HIT000448912_06
(
DQ582381
)
Representative transcript
(Non-protein coding transcript.)
genome : 59,677,131 - 59,677,161 (31)
query : 1 - 31 (31/31)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0174657)
HIX0174657
HIT000464400_06
(
DQ597869
)
(Non-protein coding transcript.)
genome : 59,677,135 - 59,677,165 (31)
query : 1 - 31 (31/31)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0174657)
HIX0021206
HIT000198730 (
NM_001794
)
(Cadherin prodomain containing protein.)
genome : 59,827,482 - 60,515,673 (688,192)
query : 1 - 6,511 (6,511/6,528)
16 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 18, E.R. 12
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021206)
HIX0021206
HIT000313845 (
ENST00000360469
)
(Cadherin prodomain containing protein.)
genome : 59,827,482 - 60,515,673 (688,192)
query : 1 - 6,511 (6,511/6,511)
16 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 18, E.R. 12
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021206)
HIX0021206
HIT000337008
(
BC101651
)
Representative transcript
(Cadherin-4; Retinal cadherin; R-CAD; R-cadherin; Precursor;)
genome : 59,827,482 - 60,512,073 (684,592)
query : 1 - 2,911 (2,911/2,911)
16 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000233 : Cadherin, cytoplasmic domain
IPR002126 : Cadherin
IPR014868 : Cadherin prodomain
IPR015919 : Cadherin-like
IPR020894 : Cadherin conserved site
IPR027397 : Catenin binding domain
GO :
0005509 : Molecular Function : calcium ion binding
0005886 : Cellular Component : plasma membrane
0007155 : Biological Process : cell adhesion
0007156 : Biological Process : homophilic cell adhesion
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 18, E.R. 12
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021206)
Ortholog candidate ( ->
Evola
)
Gallus
sp. (Chicken) : D14459
Mus
sp. (Mouse) : D14888
Canis
sp. (Dog) : ENSCAFT00000019849
Danio
sp. (Zebrafish) : ENSDART00000098208
Macaca
sp. (Macaque) : ENSMMUT00000017252
Oryzias
sp. (Medaka) : ENSORLT00000017003
Pongo
sp. (Orangutan) : ENSPPYT00000012998
Tetraodon
sp. (Tetraodon) : GSTENT00013629001
Takifugu
sp. (Fugu) : SINFRUT00000157329
Takifugu
sp. (Fugu) : SINFRUT00000182560
Pan
sp. (Chimpanzee) : XM_001147328
Monodelphis
sp. (Opossum) : XM_001377016
Equus
sp. (Horse) : XM_001914979
Rattus
sp. (Rat) : XM_230955
Bos
sp. (Cow) : XM_604152
HIX0021206
HIT000340279
(
BC112150
)
(Cadherin-4; Retinal cadherin; R-CAD; R-cadherin; Precursor;)
genome : 59,827,482 - 60,512,073 (684,592)
query : 1 - 2,911 (2,911/2,911)
16 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000233 : Cadherin, cytoplasmic domain
IPR002126 : Cadherin
IPR014868 : Cadherin prodomain
IPR015919 : Cadherin-like
IPR020894 : Cadherin conserved site
IPR027397 : Catenin binding domain
GO :
0005509 : Molecular Function : calcium ion binding
0005886 : Cellular Component : plasma membrane
0007155 : Biological Process : cell adhesion
0007156 : Biological Process : homophilic cell adhesion
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 18, E.R. 12
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021206)
HIX0021206
HIT000434058
(
AK315192
)
(Cadherin-4; Retinal cadherin; R-CAD; R-cadherin; Precursor;)
genome : 59,827,528 - 60,512,001 (684,474)
query : 1 - 2,793 (2,793/2,793)
16 exons
identity = 0.998
5'(1.000;0.991)3'
coverage = 1.000
InterPro :
IPR000233 : Cadherin, cytoplasmic domain
IPR002126 : Cadherin
IPR014868 : Cadherin prodomain
IPR015919 : Cadherin-like
IPR020894 : Cadherin conserved site
IPR027397 : Catenin binding domain
GO :
0005509 : Molecular Function : calcium ion binding
0005886 : Cellular Component : plasma membrane
0007155 : Biological Process : cell adhesion
0007156 : Biological Process : homophilic cell adhesion
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 18, E.R. 12
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021206)
HIX0021206
HIT000193120
(
L34059
)
(Cadherin-4; Retinal cadherin; R-CAD; R-cadherin; Precursor;)
genome : 59,827,559 - 60,512,283 (684,725)
query : 4 - 3,047 (3,044/3,048)
16 exons
identity = 0.994
5'(1.000;1.000)3'
coverage = 0.999
InterPro :
IPR000233 : Cadherin, cytoplasmic domain
IPR002126 : Cadherin
IPR014868 : Cadherin prodomain
IPR015919 : Cadherin-like
IPR020894 : Cadherin conserved site
IPR027397 : Catenin binding domain
GO :
0005509 : Molecular Function : calcium ion binding
0005886 : Cellular Component : plasma membrane
0007155 : Biological Process : cell adhesion
0007156 : Biological Process : homophilic cell adhesion
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 18, E.R. 12
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021206)
HIX0059999
HIT000336182
(
BC100292
)
Representative transcript
(Hypothetical protein.)
genome : 59,944,935 - 59,945,911 (977)
query : 1 - 977 (977/993)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0059999)
HIX0213073
eHIT000012593 ( ESTsASS_20_144 )
Representative transcript
(Non-protein coding transcript.)
genome : 60,009,681 - 60,012,423 (2,743)
query : 1 - 578 (578/578)
2 exons
ESTs assembly
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213073)
ESTs used for assembly :
DA497788
HIX0021206
HIT000723305 (
NM_001252338
)
(Cadherin prodomain containing protein.)
genome : 60,074,477 - 60,515,673 (441,197)
query : 1 - 6,326 (6,326/6,343)
15 exons
identity = 1.000
5'(0.987)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 8.5, E.R. 8, pero 5.5, cyto 5, extr_plas 5,
mito_pero 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021206)
HIX0021206
HIT000427211
(
AK308345
)
(Cadherin-4 isoform 2.)
genome : 60,074,477 - 60,512,275 (437,799)
query : 1 - 2,927 (2,927/2,931)
15 exons
identity = 0.998
5'(0.987)3'
coverage = 0.999
InterPro :
IPR000233 : Cadherin, cytoplasmic domain
IPR002126 : Cadherin
IPR014868 : Cadherin prodomain
IPR015919 : Cadherin-like
IPR020894 : Cadherin conserved site
IPR027397 : Catenin binding domain
GO :
0005509 : Molecular Function : calcium ion binding
0005886 : Cellular Component : plasma membrane
0007155 : Biological Process : cell adhesion
0007156 : Biological Process : homophilic cell adhesion
0016020 : Cellular Component : membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 8.5, E.R. 7, cyto 6, pero 5.5, extr_plas 5,
mito_pero 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021206)
HIX0213073
eHIT000012593 ( ESTsASS_20_144 )
Representative transcript
(Non-protein coding transcript.)
genome : 60,009,681 - 60,012,423 (2,743)
query : 1 - 578 (578/578)
2 exons
ESTs assembly
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213073)
ESTs used for assembly :
DA497788
AL109928.33
58500001-58619816 F -
NCBI
AL353677.8
58619817-58623928 F +
NCBI
AL132822.15
58623929-58742701 F +
NCBI
AL035070.3
58742702-58899267 F +
NCBI
AL121918.26
58899268-59012921 F +
NCBI
AL136143.9
59012922-59099978 F +
NCBI
AL358237.13
59099979-59147728 F +
NCBI
AL161940.6
59147729-59245849 F +
NCBI
AL117372.35
59245850-59378608 F +
NCBI
AL139348.3
59378609-59447139 F +
NCBI
AL050326.3
59447140-59525094 F +
NCBI
AL121910.26
59525095-59666889 F +
NCBI
AL121887.24
59666890-59780262 F +
NCBI
AL365229.13
59780263-59901640 F +
NCBI
AL450463.20
59901641-59929394 F +
NCBI
BX640515.3
59929395-59947276 F +
NCBI
AL391316.7
59947277-59993604 F -
NCBI
AL160412.14
59993605-60100000 F -
NCBI