bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0016112
HIT000723577 (
NM_001256295
)
genome : 40,177,231 - 40,196,877 (19,647)
query : 1 - 3,934 (3,934/3,954)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016112)
HIX0016112
HIT000313633 (
ENST00000360214
)
genome : 40,177,231 - 40,196,879 (19,649)
query : 1 - 3,936 (3,936/3,936)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016112)
HIX0016112
HIT000021696
(
AK096841
)
genome : 40,177,231 - 40,195,720 (18,490)
query : 1 - 2,777 (2,777/2,777)
11 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.992;1.000;0.999)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016112)
HIX0016112
HIT000191236
(
J04102
)
genome : 40,177,755 - 40,195,380 (17,626)
query : 2 - 2,269 (2,268/2,269)
10 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.996)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016112)
HIX0016112
HIT000201945 (
NM_005239
)
genome : 40,177,755 - 40,196,877 (19,123)
query : 1 - 3,764 (3,764/3,784)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016112)
HIX0016112
HIT000314236 (
ENST00000360938
)
genome : 40,177,755 - 40,196,879 (19,125)
query : 1 - 3,766 (3,766/3,766)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016112)
HIX0016112
HIT000052766
(
BC042954
)
genome : 40,177,853 - 40,195,723 (17,871)
query : 1 - 2,512 (2,512/2,527)
10 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.992;1.000;0.999)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016112)
HIX0016112
HIT000434429
(
AK315563
)
genome : 40,177,854 - 40,194,813 (16,960)
query : 1 - 1,603 (1,603/1,603)
10 exons
identity = 0.999
5'(0.990;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016112)
HIX0016112
HIT000530212 (
ENST00000432278
)
genome : 40,177,875 - 40,186,905 (9,031)
query : 1 - 1,033 (1,033/1,033)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016112)
HIX0016112
HIT000037802
(
BC017040
)
genome : 40,177,883 - 40,195,723 (17,841)
query : 1 - 2,482 (2,482/2,500)
10 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.992;1.000;1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016112)
HIX0016112
HIT000085312
(
AY216265
)
genome : 40,180,034 - 40,183,110 (3,077)
query : 1 - 3,077 (3,077/3,099)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016112)
HIX0016112
HIT000554900 (
ENST00000456966
)
genome : 40,181,560 - 40,190,570 (9,011)
query : 1 - 972 (972/972)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016112)
HIX0016112
HIT000099758
(
BT006838
)
genome : 40,181,959 - 40,194,811 (12,853)
query : 1 - 1,408 (1,408/1,410)
9 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.992;
1.000;1.000)3'
coverage = 0.999
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016112)
HIX0016112
HIT000194135
(
M11922
)
genome : 40,191,585 - 40,194,813 (3,229)
query : 1 - 441 (441/450)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 0.980
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016112)
HIX0016112
HIT000003010
(
AK000535
)
genome : 40,195,987 - 40,196,877 (891)
query : 1 - 891 (891/911)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016112)
AP001040.1
40167055-40192798 F +
NCBI
AP001041.1
40192799-40207054 F +
NCBI