bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0227144
HIT000018708
(
AK093842
)
genome : 29,190,547 - 29,193,033 (2,487)
query : 1 - 2,173 (2,173/2,173)
2 exons
identity = 1.000
3'(1.000;0.999)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0227144)
HIX0227144
HIT000588116 (
ENST00000484256
)
genome : 29,190,547 - 29,193,033 (2,487)
query : 1 - 2,173 (2,173/2,173)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0227144)
HIX0227310
HIT000586640 (
ENST00000482720
)
genome : 29,194,894 - 29,196,557 (1,664)
query : 1 - 520 (520/520)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0227310)
HIX0041231
HIT000556014 (
ENST00000458080
)
genome : 29,196,671 - 29,244,547 (47,877)
query : 1 - 505 (505/505)
4 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0041231)
HIX0041231
HIT000516226 (
ENST00000418292
)
genome : 29,196,692 - 29,235,021 (38,330)
query : 1 - 208 (208/208)
2 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0041231)
HIX0041231
HIT000067022
(
AF086143
)
genome : 29,196,697 - 29,197,211 (515)
query : 1 - 515 (515/524)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0041231)
HIX0041231
HIT000696865 (
ENST00000585003
)
genome : 29,196,697 - 29,197,212 (516)
query : 1 - 516 (516/516)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0041231)
HIX0041231
HIT000549420 (
ENST00000451486
)
genome : 29,197,880 - 29,218,203 (20,324)
query : 1 - 347 (347/347)
2 exons
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0041231)
HIX0016344
HIT000035989
(
BC012841
)
genome : 29,190,547 - 29,196,544 (5,998)
query : 1 - 1,805 (1,805/1,834)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.999
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016344)
HIX0016344
HIT000195434
(
M31627
)
genome : 29,190,548 - 29,196,524 (5,977)
query : 1 - 1,793 (1,793/1,818)
5 exons
identity = 0.987
3'(0.982;1.000;1.000;1.000;0.987)5'
coverage = 0.986
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016344)
HIX0016344
HIT000088788
(
BC015709
)
genome : 29,190,548 - 29,196,453 (5,906)
query : 1 - 1,713 (1,713/1,730)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016344)
HIX0016344
HIT000397900 (
NM_001079539
)
genome : 29,190,548 - 29,196,560 (6,013)
query : 1 - 1,794 (1,794/1,810)
5 exons
identity = 0.984
3'(1.000;0.795;1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016344)
HIX0016344
HIT000030017
(
BC000938
)
genome : 29,190,545 - 29,196,517 (5,973)
query : 1 - 1,780 (1,780/1,793)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016344)
HIX0016344
HIT000061249
(
AB076383
)
genome : 29,190,557 - 29,196,520 (5,964)
query : 1 - 1,771 (1,771/1,787)
5 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;0.996)5'
coverage = 0.991
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016344)
HIX0016344
HIT000061250
(
AB076384
)
genome : 29,190,557 - 29,196,520 (5,964)
query : 1 - 1,745 (1,745/1,761)
5 exons
identity = 0.982
3'(1.000;0.795;1.000;1.000;0.996)5'
coverage = 0.991
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016344)
HIX0016344
HIT000102977 (
ENST00000216037
)
genome : 29,190,543 - 29,196,585 (6,043)
query : 1 - 1,850 (1,850/1,850)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016344)
HIX0016344
HIT000504522 (
ENST00000403532
)
genome : 29,190,545 - 29,196,546 (6,002)
query : 1 - 1,824 (1,824/1,824)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016344)
HIX0016344
HIT000201797 (
NM_005080
)
genome : 29,190,548 - 29,196,560 (6,013)
query : 1 - 1,820 (1,820/1,820)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016344)
HIX0016344
HIT000505141 (
ENST00000405219
)
genome : 29,190,577 - 29,196,121 (5,545)
query : 1 - 1,690 (1,690/1,690)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016344)
HIX0016344
HIT000424985
(
AK292188
)
genome : 29,191,081 - 29,196,557 (5,477)
query : 1 - 1,284 (1,284/1,284)
5 exons
identity = 0.998
3'(0.998;1.000;1.000;1.000;0.996)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016344)
HIX0016344
HIT000136977 (
ENST00000344347
)
genome : 29,191,163 - 29,196,512 (5,350)
query : 1 - 1,131 (1,131/1,131)
5 exons
identity = 0.974
3'(1.000;0.795;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016344)
HIX0016344
HIT000267545
(
CR456611
)
genome : 29,191,459 - 29,196,515 (5,057)
query : 1 - 864 (864/864)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016344)
HIX0016344
HIT000432627
(
AK313761
)
genome : 29,191,534 - 29,196,557 (5,024)
query : 1 - 830 (830/830)
5 exons
identity = 0.996
3'(1.000;0.993;1.000;1.000;0.993)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016344)
Z93930.10
29185564-29201563 F +
NCBI
FLAM_C
AluSp
(TTG)n
AluSx
AluSg
AluJr
FLAM_C
AluSz
AluSx3
AluSq2
AluY
MIR
MIRc
AluSx1
(TAA)n
AluSx1
AluSz6
MIRb
(CCCCAG)n
AluSx
FLAM_C
AluSc8
L2a
FLAM_C
AluSx1
LTR27B
L1MDa
L1MEe
AluJr
L1MDa
AluSz6
AluJb
AluSx
MER9a1
AluY
MER9a1