bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0163908
HIT000552502 (
ENST00000454568
)
(Conserved hypothetical protein.)
genome : 36,211,259 - 36,211,940 (682)
query : 1 - 682 (682/682)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, mito 14
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0163908)
HIX0003163
HIT000111001 (
ENST00000273183
)
(SH3 and cysteine-rich domain-containing protein; Src homology 3 and cysteine-rich domain-containing protein;)
genome : 36,421,836 - 36,589,499 (167,664)
query : 1 - 3,227 (3,227/3,227)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 15, nucl 10.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003163)
HIX0003163
HIT000432359
(
AK313493
)
(SH3 and cysteine-rich domain-containing protein; Src homology 3 and cysteine-rich domain-containing protein;)
genome : 36,421,984 - 36,587,781 (165,798)
query : 1 - 1,361 (1,361/1,361)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001452 : SH3 domain
IPR002219 : Protein kinase C-like, phorbol ester/diacylglycerol-binding domain
IPR011511 : Variant SH3 domain
IPR013315 : Spectrin alpha chain, SH3 domain
GO :
0005515 : Molecular Function : protein binding
0035556 : Biological Process : intracellular signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 15, nucl 10.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003163)
HIX0003163
HIT000038761
(
BC020221
)
(SH3 and cysteine-rich domain-containing protein; Src homology 3 and cysteine-rich domain-containing protein;)
genome : 36,421,987 - 36,589,126 (167,140)
query : 1 - 2,703 (2,703/2,721)
11 exons
identity = 1.000
5'(1.000;0.996;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001452 : SH3 domain
IPR002219 : Protein kinase C-like, phorbol ester/diacylglycerol-binding domain
IPR011511 : Variant SH3 domain
IPR013315 : Spectrin alpha chain, SH3 domain
GO :
0005515 : Molecular Function : protein binding
0035556 : Biological Process : intracellular signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 15, nucl 10.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003163)
HIX0003163
HIT000493784
(
AK299160
)
(SH3 and cysteine-rich domain-containing protein; Src homology 3 and cysteine-rich domain-containing protein;)
genome : 36,421,995 - 36,587,980 (165,986)
query : 1 - 1,366 (1,366/1,366)
9 exons
identity = 0.999
5'(1.000;1.000;0.991;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001452 : SH3 domain
IPR011511 : Variant SH3 domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, cyto_nucl 16.5, cyto 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003163)
HIX0003163
HIT000555309 (
ENST00000457375
)
(SH3 and cysteine-rich domain-containing protein; Src homology 3 and cysteine-rich domain-containing protein;)
genome : 36,421,995 - 36,587,980 (165,986)
query : 1 - 1,366 (1,366/1,366)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 19, cyto 16.5, nucl 14.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003163)
HIX0003163
HIT000497321
(
AK302697
)
(SH3 and cysteine-rich domain-containing protein; Src homology 3 and cysteine-rich domain-containing protein;)
genome : 36,422,017 - 36,588,123 (166,107)
query : 1 - 1,630 (1,630/1,630)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001452 : SH3 domain
IPR002219 : Protein kinase C-like, phorbol ester/diacylglycerol-binding domain
IPR011511 : Variant SH3 domain
IPR013315 : Spectrin alpha chain, SH3 domain
GO :
0005515 : Molecular Function : protein binding
0035556 : Biological Process : intracellular signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 13.5, nucl 11, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003163)
HIX0003163
HIT000525420 (
ENST00000427486
)
(SH3 and cysteine-rich domain-containing protein; Src homology 3 and cysteine-rich domain-containing protein;)
genome : 36,422,020 - 36,534,721 (112,702)
query : 1 - 605 (605/605)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12, extr 10, cyto 10
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003163)
HIX0003163
HIT000532583 (
ENST00000434649
)
(SH3 and cysteine-rich domain-containing protein; Src homology 3 and cysteine-rich domain-containing protein;)
genome : 36,422,065 - 36,570,239 (148,175)
query : 1 - 827 (827/827)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16.5, nucl 14.5, cyto 13.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003163)
HIX0003163
HIT000101933
(
D86640
)
Representative transcript
(SH3 and cysteine-rich domain-containing protein; Src homology 3 and cysteine-rich domain-containing protein;)
genome : 36,422,097 - 36,589,496 (167,400)
query : 1 - 2,963 (2,963/2,963)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR001452 : SH3 domain
IPR002219 : Protein kinase C-like, phorbol ester/diacylglycerol-binding domain
IPR011511 : Variant SH3 domain
IPR013315 : Spectrin alpha chain, SH3 domain
GO :
0005515 : Molecular Function : protein binding
0035556 : Biological Process : intracellular signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 15, nucl 10.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003163)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK143440
Bos
sp. (Cow) : BC126707
Equus
sp. (Horse) : ENSECAT00000022635
Oryzias
sp. (Medaka) : ENSORLT00000018409
Pongo
sp. (Orangutan) : ENSPPYT00000016309
Rattus
sp. (Rat) : ENSRNOT00000011780
Tetraodon
sp. (Tetraodon) : GSTENT00032128001
Takifugu
sp. (Fugu) : SINFRUT00000157178
Macaca
sp. (Macaque) : XM_001101503
Danio
sp. (Zebrafish) : XM_001344434
Monodelphis
sp. (Opossum) : XM_001374682
Gallus
sp. (Chicken) : XM_426020
Pan
sp. (Chimpanzee) : XM_516358
Canis
sp. (Dog) : XM_534217
HIX0003163
HIT000200009 (
NM_003149
)
(SH3 and cysteine-rich domain-containing protein; Src homology 3 and cysteine-rich domain-containing protein;)
genome : 36,422,097 - 36,589,496 (167,400)
query : 1 - 2,963 (2,963/2,963)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 15, nucl 10.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003163)
HIX0003163
HIT000429291
(
AK310425
)
(SH3 and cysteine-rich domain-containing protein; Src homology 3 and cysteine-rich domain-containing protein;)
genome : 36,422,161 - 36,547,278 (125,118)
query : 1 - 1,230 (1,230/1,230)
10 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;0.994;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR002219 : Protein kinase C-like, phorbol ester/diacylglycerol-binding domain
GO :
0035556 : Biological Process : intracellular signal transduction
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 9, mito 8, cyto 7, mito_nucl 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003163)
HIX0003163
HIT000580582 (
ENST00000476388
)
(SH3 and cysteine-rich domain-containing protein; Src homology 3 and cysteine-rich domain-containing protein;)
genome : 36,422,161 - 36,547,278 (125,118)
query : 1 - 1,230 (1,230/1,230)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 9, mito 8, cyto 7, mito_nucl 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003163)
HIX0003163
HIT000589915 (
ENST00000486143
)
(SH3 and cysteine-rich domain-containing protein; Src homology 3 and cysteine-rich domain-containing protein;)
genome : 36,422,177 - 36,500,833 (78,657)
query : 1 - 476 (476/476)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 27.5, cyto_nucl 15.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003163)
HIX0204487
HIT000464996_08
(
DQ598465
)
Representative transcript
(Non-protein coding transcript.)
genome : 36,495,519 - 36,495,549 (31)
query : 1 - 31 (31/31)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0204487)
HIX0003163
HIT000577783 (
ENST00000473452
)
(SH3 and cysteine-rich domain-containing protein; Src homology 3 and cysteine-rich domain-containing protein;)
genome : 36,527,663 - 36,547,729 (20,067)
query : 1 - 715 (715/715)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, mito 6, cyto 3, E.R._mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003163)
HIX0003163
HIT000569776 (
ENST00000465064
)
(SH3 and cysteine-rich domain-containing protein; Src homology 3 and cysteine-rich domain-containing protein;)
genome : 36,570,201 - 36,570,731 (531)
query : 1 - 431 (431/431)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto 11, nucl 4, mito 4, mito_nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003163)
HIX0119145
HIT000013507
(
AK056893
)
Representative transcript
(SH3 and cysteine-rich domain-containing protein; Src homology 3 and cysteine-rich domain-containing protein;)
genome : 36,587,137 - 36,589,488 (2,352)
query : 1 - 2,352 (2,352/2,352)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto_nucl 12.5, extr 12, cyto 10, nucl 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0119145)
HIX0182247
HIT000523027 (
ENST00000425093
)
(Conserved hypothetical protein.)
genome : 36,657,498 - 36,678,949 (21,452)
query : 1 - 1,451 (1,451/1,451)
9 exons
identity = 0.982
3'(1.000;0.991;0.968;0.977;0.954;1.000;0.987;
0.966;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 29, nucl 1.5, cyto_nucl 1.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0182247)
HIX0182247
pHIT000101096 ( pHIT000101096 )
Representative transcript
(Conserved hypothetical protein.)
genome : 36,657,502 - 36,679,290 (21,789)
query : 1 - 1,278 (1,278/1,278)
9 exons
InterPro :
IPR010630 : Neuroblastoma breakpoint family (NBPF) domain
SOSUI :
SOLUBLE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0182247)
CAGE tag :
T03F022E60FC
Ortholog candidate ( ->
Evola
)
Canis
sp. (Dog) : ENSCAFT00000036883
Pan
sp. (Chimpanzee) : XM_001173786
HIX0003164
HIT000486272 (
NM_033403
)
(Serine/threonine-protein kinase DCLK3; EC=2.7.11.1; Doublecortin domain-containing protein 3C; Doublecortin-like and CAM kinase-like 3; Doublecortin-like kinase 3;)
genome : 36,753,913 - 36,781,352 (27,440)
query : 1 - 5,344 (5,344/5,344)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.7.11.1
KEGG pathway :
04150 : mTOR signaling pathway (5)
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 12, nucl 5.5, mito 4,
E.R._mito 2.83333, mito_pero 2.83333
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003164)
HIX0003164
HIT000514450 (
ENST00000416516
)
(Serine/threonine-protein kinase DCLK3; EC=2.7.11.1; Doublecortin domain-containing protein 3C; Doublecortin-like and CAM kinase-like 3; Doublecortin-like kinase 3;)
genome : 36,753,913 - 36,781,352 (27,440)
query : 1 - 5,344 (5,344/5,344)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.7.11.1
KEGG pathway :
04150 : mTOR signaling pathway (5)
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 12, nucl 5.5, mito 4,
E.R._mito 2.83333, mito_pero 2.83333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003164)
HIX0003164
HIT000001481
(
AB051552
)
Representative transcript
(Serine/threonine-protein kinase DCLK3.)
genome : 36,753,913 - 36,780,031 (26,119)
query : 1 - 4,726 (4,726/4,726)
4 exons
identity = 0.997
3'(0.996;0.994;1.000;0.999)5'
coverage = 1.000
EC number :
EC 2.7.11.1
KEGG pathway :
04150 : mTOR signaling pathway (5)
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto_nucl 10.8333, nucl 10, cyto 9.5, cyto_mito 7.5,
mito_pero 4.33333, plas 4, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003164)
Ortholog candidate ( ->
Evola
)
Danio
sp. (Zebrafish) : AB266175
Mus
sp. (Mouse) : AK135010
Equus
sp. (Horse) : ENSECAT00000021523
Oryzias
sp. (Medaka) : ENSORLT00000014508
Pongo
sp. (Orangutan) : ENSPPYT00000016308
Tetraodon
sp. (Tetraodon) : GSTENT00031496001
Takifugu
sp. (Fugu) : SINFRUT00000153580
Rattus
sp. (Rat) : XM_001076419
Macaca
sp. (Macaque) : XM_001088118
Gallus
sp. (Chicken) : XM_001236016
Monodelphis
sp. (Opossum) : XM_001374662
Canis
sp. (Dog) : XM_542700
Bos
sp. (Cow) : XM_583775
Pan
sp. (Chimpanzee) : XR_025289
HIX0003164
HIT000042861
(
AK122988
)
(Serine/threonine-protein kinase DCLK3.)
genome : 36,756,419 - 36,779,960 (23,542)
query : 1 - 2,157 (2,157/2,157)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.7.11.1
KEGG pathway :
04150 : mTOR signaling pathway (5)
InterPro :
IPR002290 : Serine/threonine/dual specificity protein kinase, catalytic domain
IPR008271 : Serine/threonine-protein kinase, active site
IPR020636 : Calcium/calmodulin-dependent/calcium-dependent protein kinase
GO :
0004672 : Molecular Function : protein kinase activity
0004674 : Molecular Function : protein serine/threonine kinase activity
0005524 : Molecular Function : ATP binding
0006468 : Biological Process : protein phosphorylation
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 11.5, cyto_mito 8.66667, pero 8,
mito_pero 7.33333, nucl 5, mito 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003164)
HIX0003164
HIT000601290 (
ENST00000498047
)
(Non-protein coding transcript.)
genome : 36,759,584 - 36,771,286 (11,703)
query : 1 - 280 (280/280)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003164)
HIX0129701
HIT000395877 (
ENST00000388967
)
(Chaperonin Cpn60/TCP-1 family protein.)
genome : 36,808,608 - 36,810,290 (1,683)
query : 1 - 1,683 (1,683/1,683)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, mito 10, cyto_nucl 10
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0129701)
HIX0129701
HIT000522820 (
ENST00000424886
)
(Conserved hypothetical protein.)
genome : 36,810,216 - 36,825,658 (15,443)
query : 1 - 571 (571/571)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0129701)
HIX0204404
eHIT000015702 ( ESTsASS_3_5 )
Representative transcript
(Non-protein coding transcript.)
genome : 36,860,767 - 36,863,974 (3,208)
query : 1 - 564 (564/564)
3 exons
ESTs assembly
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0204404)
ESTs used for assembly :
BG205916,BG210536
HIX0003165
HIT000002664
(
AK000189
)
Representative transcript
(Conserved hypothetical protein.)
genome : 36,864,649 - 36,866,649 (2,001)
query : 1 - 2,003 (2,003/2,014)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 0.999
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto_nucl 16.3333, cyto 13, nucl 12.5,
cyto_pero 8.33333, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003165)
HIX0003166
HIT000486171 (
NM_014831
)
(TPR and ankyrin repeat-containing protein 1; Lupus brain antigen 1 homolog;)
genome : 36,868,308 - 36,986,548 (118,241)
query : 1 - 10,484 (10,484/10,499)
23 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29.5, cyto_nucl 15.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003166)
HIX0003166
HIT000115967 (
ENST00000301807
)
(TPR and ankyrin repeat-containing protein 1; Lupus brain antigen 1 homolog;)
genome : 36,868,311 - 36,986,548 (118,238)
query : 1 - 10,481 (10,481/10,481)
23 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29.5, cyto_nucl 15.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003166)
HIX0003166
HIT000527910 (
ENST00000429976
)
(TPR and ankyrin repeat-containing protein 1; Lupus brain antigen 1 homolog;)
genome : 36,868,311 - 36,986,548 (118,238)
query : 1 - 10,481 (10,481/10,481)
23 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29.5, cyto_nucl 15.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003166)
HIX0003166
HIT000000048
(
AB002340
)
Representative transcript
(TPR and ankyrin repeat-containing protein 1; Lupus brain antigen 1 homolog;)
genome : 36,868,311 - 36,900,374 (32,064)
query : 1 - 8,859 (8,859/8,859)
13 exons
identity = 1.000
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.999;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28.5, cyto_nucl 16
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003166)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK079552
Equus
sp. (Horse) : ENSECAT00000019382
Pongo
sp. (Orangutan) : ENSPPYT00000016306
Rattus
sp. (Rat) : XM_001076394
Pan
sp. (Chimpanzee) : XM_001173837
Canis
sp. (Dog) : XM_534218
Macaca
sp. (Macaque) : XR_010565
Bos
sp. (Cow) : XR_028825
HIX0003166
HIT000526911 (
ENST00000428977
)
(TPR and ankyrin repeat-containing protein 1; Lupus brain antigen 1 homolog;)
genome : 36,868,311 - 36,900,374 (32,064)
query : 1 - 8,859 (8,859/8,859)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28.5, cyto_nucl 16
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003166)
HIX0003166
HIT000568755 (
ENST00000463984
)
(Conserved hypothetical protein.)
genome : 36,884,171 - 36,892,142 (7,972)
query : 1 - 833 (833/833)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15, cyto 14.5, extr 9, nucl 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003166)
HIX0003166
HIT000021533
(
AK096678
)
(TPR and ankyrin repeat-containing protein 1; Lupus brain antigen 1 homolog;)
genome : 36,893,679 - 36,898,944 (5,266)
query : 1 - 2,439 (2,439/2,439)
2 exons
identity = 0.999
3'(1.000;0.999)5'
coverage = 1.000
InterPro :
IPR014016 : UvrD-like Helicase, ATP-binding domain
GO :
0005524 : Molecular Function : ATP binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003166)
HIX0003166
HIT000612736 (
ENST00000513141
)
(TPR and ankyrin repeat-containing protein 1; Lupus brain antigen 1 homolog;)
genome : 36,902,506 - 36,915,724 (13,219)
query : 1 - 416 (416/416)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, mito 5, cyto_nucl 5, nucl 4.5, cyto 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003166)
HIX0163808
HIT000539280 (
ENST00000441346
)
(Chromo shadow domain containing protein.)
genome : 36,921,675 - 36,922,220 (546)
query : 1 - 546 (546/546)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 10.5, extr 9, nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0163808)
HIX0003166
HIT000606059 (
ENST00000505962
)
(TPR and ankyrin repeat-containing protein 1; Lupus brain antigen 1 homolog;)
genome : 36,931,319 - 36,940,649 (9,331)
query : 1 - 525 (525/525)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 9.5, mito 9, extr 8, cyto_nucl 8, nucl 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003166)
HIX0003166
HIT000568543 (
ENST00000463764
)
(TPR and ankyrin repeat-containing protein 1; Lupus brain antigen 1 homolog;)
genome : 36,940,598 - 36,950,009 (9,412)
query : 1 - 476 (476/476)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 26, cyto_nucl 16.5, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003166)
HIX0003166
HIT000611660 (
ENST00000511973
)
(Conserved hypothetical protein.)
genome : 36,944,636 - 36,986,548 (41,913)
query : 1 - 402 (402/402)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003166)
HIX0119953
HIT000473021 (
ENST00000387446
)
(Hypothetical short protein.)
genome : 37,009,682 - 37,009,807 (126)
query : 1 - 126 (126/126)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
This sequence is too short.
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0119953)
HIX0119953
HIT000706704_01 (
ENST00000594904
)
(Hypothetical short protein.)
genome : 37,009,682 - 37,009,807 (126)
query : 1 - 126 (126/126)
1 exon
identity = 0.952
3'(0.952)5'
coverage = 1.000
SOSUI :
This sequence is too short.
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0119953)
HIX0114489
HIT000510251 (
ENST00000412317
)
(Protease-associated domain, PA containing protein.)
genome : 37,017,807 - 37,018,331 (525)
query : 1 - 525 (525/525)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 12, cyto_nucl 8.66667, nucl 8.5, cyto 5.5,
cyto_pero 5.5, extr 3, pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0114489)
HIX0003167
HIT000123247 (
ENST00000322716
)
(EPM2A-interacting protein 1; Laforin-interacting protein;)
genome : 37,027,357 - 37,034,795 (7,439)
query : 1 - 7,439 (7,439/7,439)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 14.5, nucl 10.5, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003167)
HIX0003167
HIT000205103 (
NM_014805
)
(EPM2A-interacting protein 1; Laforin-interacting protein;)
genome : 37,027,357 - 37,034,795 (7,439)
query : 1 - 7,439 (7,439/7,439)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 14.5, nucl 10.5, mito 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003167)
HIX0003167
HIT000250907
(
AY178832
)
Representative transcript
(EPM2A-interacting protein 1; Laforin-interacting protein;)
genome : 37,029,229 - 37,034,795 (5,567)
query : 1 - 5,567 (5,567/5,567)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
InterPro :
IPR026630 : EPM2A-interacting protein 1
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 14.5, nucl 10.5, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003167)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK030084
Pongo
sp. (Orangutan) : CR858806
Equus
sp. (Horse) : ENSECAT00000004792
Monodelphis
sp. (Opossum) : XM_001372946
Pan
sp. (Chimpanzee) : XM_526480
Bos
sp. (Cow) : XM_591313
Canis
sp. (Dog) : XM_846051
HIX0003167
HIT000261575
(
BC064696
)
(EPM2A-interacting protein 1; Laforin-interacting protein;)
genome : 37,029,358 - 37,034,659 (5,302)
query : 1 - 5,305 (5,305/5,320)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
InterPro :
IPR026630 : EPM2A-interacting protein 1
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 14.5, nucl 10.5, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003167)
HIX0003167
HIT000096995
(
BC041957
)
(Hypothetical short protein.)
genome : 37,029,360 - 37,030,566 (1,207)
query : 1 - 1,208 (1,208/1,223)
1 exon
identity = 0.998
3'(0.998)5'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, mito 9, cyto 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003167)
HIX0003167
HIT000000491
(
AB018309
)
(EPM2A-interacting protein 1; Laforin-interacting protein;)
genome : 37,030,498 - 37,034,684 (4,187)
query : 1 - 4,185 (4,185/4,185)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 14.5, nucl 10.5, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003167)
HIX0003167
HIT000004543
(
AK002069
)
(EPM2A-interacting protein 1; Laforin-interacting protein;)
genome : 37,030,498 - 37,033,608 (3,111)
query : 1 - 3,112 (3,112/3,112)
1 exon
identity = 0.998
3'(0.998)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21, mito 5, nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003167)
HIX0003167
HIT000067191
(
AF086312
)
(Conserved hypothetical protein.)
genome : 37,030,791 - 37,031,488 (698)
query : 1 - 698 (698/707)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, cyto_mito 9.5, cyto 8, mito 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003167)
HIX0003167
HIT000064849
(
AF059751
)
(EPM2A-interacting protein 1; Laforin-interacting protein;)
genome : 37,032,694 - 37,034,664 (1,971)
query : 2 - 1,975 (1,974/1,975)
1 exon
identity = 0.996
3'(0.996)5'
coverage = 0.999
InterPro :
IPR026630 : EPM2A-interacting protein 1
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16, cyto 10, mito 2, extr 1, pero 1, lyso 1,
golg 1, E.R._mito 1
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003167)
HIX0003167
HIT000087918
(
BC012624
)
(EPM2A-interacting protein 1; Laforin-interacting protein;)
genome : 37,033,239 - 37,034,683 (1,445)
query : 5 - 1,449 (1,445/1,480)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 0.996
InterPro :
IPR026630 : EPM2A-interacting protein 1
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto_nucl 15.5, cyto 12
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003167)
HIX0215421
HIT000393006
(
DQ648888
)
(DNA mismatch repair protein Mlh1/HexB family protein.)
genome : 37,035,015 - 37,042,507 (7,493)
query : 1 - 520 (520/520)
3 exons
identity = 0.996
5'(0.997;0.989;1.000)3'
coverage = 1.000
InterPro :
IPR003594 : Histidine kinase-like ATPase, C-terminal domain
IPR011186 : DNA mismatch repair protein Mlh1/HexB
GO :
0005524 : Molecular Function : ATP binding
0005634 : Cellular Component : nucleus
0006298 : Biological Process : mismatch repair
0032300 : Cellular Component : mismatch repair complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 16, cyto_nucl 7.5, extr 6, cyto 5.5, nucl 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215421)
HIX0215421
HIT000551962 (
ENST00000454028
)
(Histidine kinase-like ATPase, C-terminal domain containing protein.)
genome : 37,035,025 - 37,050,410 (15,386)
query : 1 - 565 (565/570)
6 exons
identity = 0.993
5'(1.000;1.000;1.000;1.000;1.000;0.963)3'
coverage = 0.991
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 12.3333, cyto_mito 12.3333,
cyto_plas 10.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215421)
HIX0215421
HIT000580382 (
ENST00000476172
)
(Histidine kinase-like ATPase, C-terminal domain containing protein.)
genome : 37,035,268 - 37,042,545 (7,278)
query : 1 - 429 (429/429)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, extr 10, nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215421)
HIX0215421
HIT000595961 (
ENST00000492474
)
(Histidine kinase-like ATPase, C-terminal domain containing protein.)
genome : 37,035,317 - 37,050,410 (15,094)
query : 1 - 584 (584/589)
7 exons
identity = 0.993
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.963)3'
coverage = 0.992
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215421)
HIX0215421
HIT000527051 (
ENST00000429117
)
(DNA mismatch repair protein Mlh1/HexB family protein.)
genome : 37,035,317 - 37,050,395 (15,079)
query : 1 - 562 (562/562)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21, cyto_nucl 12.8333, cyto_plas 11.5, mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215421)
HIX0215421
HIT000571529 (
ENST00000466900
)
(Histidine kinase-like ATPase, C-terminal domain containing protein.)
genome : 37,035,339 - 37,050,373 (15,035)
query : 1 - 555 (555/555)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215421)
HIX0215421
HIT000589672 (
ENST00000485889
)
(Histidine kinase-like ATPase, C-terminal domain containing protein.)
genome : 37,035,718 - 37,050,410 (14,693)
query : 1 - 565 (565/566)
6 exons
identity = 0.993
5'(1.000;1.000;1.000;1.000;1.000;0.963)3'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215421)
HIX0215421
HIT000393007
(
DQ648889
)
(DNA mismatch repair protein Mlh1/HexB family protein.)
genome : 37,045,894 - 37,053,539 (7,646)
query : 1 - 226 (226/226)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR003594 : Histidine kinase-like ATPase, C-terminal domain
IPR011186 : DNA mismatch repair protein Mlh1/HexB
GO :
0005524 : Molecular Function : ATP binding
0005634 : Cellular Component : nucleus
0006298 : Biological Process : mismatch repair
0032300 : Cellular Component : mismatch repair complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, cyto 3, golg 2, cyto_mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215421)
HIX0215421
HIT000393009
(
DQ648891
)
(DNA mismatch repair protein Mlh1/HexB family protein.)
genome : 37,053,532 - 37,067,466 (13,935)
query : 1 - 552 (552/552)
3 exons
identity = 0.995
5'(1.000;0.987;0.997)3'
coverage = 1.000
InterPro :
IPR011186 : DNA mismatch repair protein Mlh1/HexB
IPR013507 : DNA mismatch repair protein, C-terminal
IPR014721 : Ribosomal protein S5 domain 2-type fold, subgroup
IPR020568 : Ribosomal protein S5 domain 2-type fold
GO :
0005524 : Molecular Function : ATP binding
0005634 : Cellular Component : nucleus
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
0032300 : Cellular Component : mismatch repair complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14, nucl 12, cyto 12, extr 4, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215421)
HIX0215421
HIT000545763 (
ENST00000447829
)
(Conserved hypothetical protein.)
genome : 37,053,533 - 37,067,410 (13,878)
query : 1 - 608 (608/608)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, cyto_nucl 5.66667, cyto 4.5, mito 4,
cyto_pero 4, mito_nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215421)
HIX0215421
HIT000393008
(
DQ648890
)
(DNA mismatch repair protein Mlh1/HexB family protein.)
genome : 37,053,533 - 37,067,166 (13,634)
query : 1 - 364 (364/364)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR011186 : DNA mismatch repair protein Mlh1/HexB
IPR013507 : DNA mismatch repair protein, C-terminal
IPR014721 : Ribosomal protein S5 domain 2-type fold, subgroup
IPR020568 : Ribosomal protein S5 domain 2-type fold
GO :
0005524 : Molecular Function : ATP binding
0005634 : Cellular Component : nucleus
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
0032300 : Cellular Component : mismatch repair complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 13, extr 11, nucl 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215421)
HIX0215421
HIT000484712
(
EU188669
)
(Ribosomal protein S5 domain 2-type fold, subgroup containing protein.)
genome : 37,055,917 - 37,081,725 (25,809)
query : 13 - 709 (697/709)
4 exons
identity = 0.954
5'(0.975;1.000;0.890;0.774)3'
coverage = 0.983
InterPro :
IPR014721 : Ribosomal protein S5 domain 2-type fold, subgroup
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, cyto_nucl 8, nucl 6, cyto 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215421)
HIX0215421
HIT000484710
(
EU188667
)
(DNA mismatch repair protein Mlh1/HexB family protein.)
genome : 37,055,917 - 37,070,339 (14,423)
query : 13 - 663 (651/663)
4 exons
identity = 0.972
5'(0.975;1.000;0.976;0.909)3'
coverage = 0.982
InterPro :
IPR011186 : DNA mismatch repair protein Mlh1/HexB
IPR013507 : DNA mismatch repair protein, C-terminal
IPR014721 : Ribosomal protein S5 domain 2-type fold, subgroup
IPR020568 : Ribosomal protein S5 domain 2-type fold
GO :
0005524 : Molecular Function : ATP binding
0005634 : Cellular Component : nucleus
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
0032300 : Cellular Component : mismatch repair complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, cyto_nucl 9, cyto 8, nucl 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215421)
HIX0215421
HIT000555943 (
ENST00000458009
)
(DNA mismatch repair protein, C-terminal domain containing protein.)
genome : 37,055,917 - 37,070,338 (14,422)
query : 13 - 660 (648/660)
4 exons
identity = 0.997
5'(0.983;1.000;1.000;1.000)3'
coverage = 0.982
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13.1667, cyto 10.5, nucl 8.5,
cyto_plas 7.33333, mito_nucl 7.33333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215421)
HIX0215421
HIT000484714
(
EU188671
)
Representative transcript
(DNA mismatch repair protein Mlh1/HexB family protein.)
genome : 37,055,917 - 37,081,716 (25,800)
query : 12 - 570 (559/571)
5 exons
identity = 0.979
5'(0.975;1.000;1.000;0.967;0.905)3'
coverage = 0.979
InterPro :
IPR011186 : DNA mismatch repair protein Mlh1/HexB
IPR013507 : DNA mismatch repair protein, C-terminal
IPR014721 : Ribosomal protein S5 domain 2-type fold, subgroup
IPR020568 : Ribosomal protein S5 domain 2-type fold
GO :
0005524 : Molecular Function : ATP binding
0005634 : Cellular Component : nucleus
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
0032300 : Cellular Component : mismatch repair complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16, cyto 14.5, nucl 8.5, mito 4, pero 2,
golg 2, E.R._mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215421)
HIX0215421
HIT000484711
(
EU188668
)
(Ribosomal protein S5 domain 2-type fold, subgroup containing protein.)
genome : 37,055,917 - 37,067,410 (11,494)
query : 12 - 574 (563/574)
3 exons
identity = 0.959
5'(0.975;0.994;0.934)3'
coverage = 0.981
InterPro :
IPR014721 : Ribosomal protein S5 domain 2-type fold, subgroup
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, cyto_nucl 6, nucl 5, cyto 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215421)
HIX0215421
HIT000511146 (
ENST00000413212
)
(Conserved hypothetical protein.)
genome : 37,055,923 - 37,081,727 (25,805)
query : 1 - 684 (684/684)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215421)
HIX0031209
HIT000712035_01 (
ENST00000600290
)
(Ribosomal protein L29e family protein.)
genome : 37,058,011 - 37,058,478 (468)
query : 1 - 468 (468/468)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto 10
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0031209)
HIX0031209
HIT000585647_04 (
ENST00000481681
)
(Ribosomal protein L29e family protein.)
genome : 37,058,012 - 37,058,478 (467)
query : 1 - 467 (467/467)
1 exon
identity = 0.970
3'(0.970)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto 15
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0031209)
HIX0031209
HIT000699317_01 (
ENST00000587474
)
(Hypothetical protein.)
genome : 37,058,012 - 37,058,327 (316)
query : 1 - 316 (316/316)
1 exon
identity = 0.956
3'(0.956)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_mito 9.66667, cyto 9.5, mito 9.5,
cyto_nucl 9.33333, mito_nucl 9.33333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0031209)
HIX0031209
HIT000597807_01 (
ENST00000494408
)
(Ribosomal protein L29e family protein.)
genome : 37,058,014 - 37,058,505 (492)
query : 1 - 492 (492/492)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto 10
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0031209)
HIX0031209
HIT000582467_01 (
ENST00000478358
)
(Ribosomal protein L29e family protein.)
genome : 37,058,014 - 37,058,478 (465)
query : 1 - 465 (465/465)
1 exon
identity = 0.978
3'(0.978)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0031209)
HIX0215421
HIT000484715
(
EU188672
)
(DNA mismatch repair protein Mlh1/HexB family protein.)
genome : 37,067,127 - 37,081,739 (14,613)
query : 20 - 606 (587/606)
3 exons
identity = 0.978
5'(1.000;0.960;0.894)3'
coverage = 0.969
InterPro :
IPR011186 : DNA mismatch repair protein Mlh1/HexB
GO :
0005634 : Cellular Component : nucleus
0006298 : Biological Process : mismatch repair
0032300 : Cellular Component : mismatch repair complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25.5, cyto_nucl 16.5, cyto 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215421)
HIX0215421
HIT000216763
(
S77856
)
(Non-protein coding transcript.)
genome : 37,067,129 - 37,067,188 (60)
query : 1 - 60 (60/60)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215421)
HIX0215421
HIT000393010
(
DQ648892
)
(DNA mismatch repair protein Mlh1/HexB family protein.)
genome : 37,067,467 - 37,092,028 (24,562)
query : 1 - 342 (342/342)
4 exons
identity = 0.994
5'(1.000;0.993;1.000;0.981)3'
coverage = 1.000
InterPro :
IPR011186 : DNA mismatch repair protein Mlh1/HexB
GO :
0005634 : Cellular Component : nucleus
0006298 : Biological Process : mismatch repair
0032300 : Cellular Component : mismatch repair complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, cyto 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215421)
HIX0215421
HIT000393011
(
DQ648893
)
(Conserved hypothetical protein.)
genome : 37,067,467 - 37,092,028 (24,562)
query : 1 - 233 (233/233)
3 exons
identity = 0.991
5'(1.000;0.993;0.981)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 14.5, cyto 5.5, extr 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215421)
HIX0215421
HIT000511674 (
ENST00000413740
)
(DNA mismatch repair protein Mlh1/HexB family protein.)
genome : 37,067,467 - 37,092,028 (24,562)
query : 1 - 342 (342/342)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215421)
HIX0215421
HIT000548354 (
ENST00000450420
)
(Conserved hypothetical protein.)
genome : 37,067,467 - 37,092,028 (24,562)
query : 1 - 233 (233/233)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215421)
HIX0215421
HIT000484718
(
EU188675
)
(DNA mismatch repair protein Mlh1/HexB family protein.)
genome : 37,070,274 - 37,090,102 (19,829)
query : 2 - 590 (589/599)
5 exons
identity = 0.983
5'(1.000;1.000;1.000;0.988;0.920)3'
coverage = 0.983
InterPro :
IPR011186 : DNA mismatch repair protein Mlh1/HexB
GO :
0005634 : Cellular Component : nucleus
0006298 : Biological Process : mismatch repair
0032300 : Cellular Component : mismatch repair complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 17.5, nucl 17, cyto 14
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215421)
HIX0215421
HIT000484717
(
EU188674
)
(DNA mismatch repair protein Mlh1/HexB family protein.)
genome : 37,070,296 - 37,092,263 (21,968)
query : 1 - 588 (588/588)
4 exons
identity = 0.958
5'(0.945;0.845;1.000;0.997)3'
coverage = 1.000
InterPro :
IPR011186 : DNA mismatch repair protein Mlh1/HexB
GO :
0005634 : Cellular Component : nucleus
0006298 : Biological Process : mismatch repair
0032300 : Cellular Component : mismatch repair complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, cyto_nucl 14, nucl 9, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215421)
HIX0215421
HIT000484708
(
EU188665
)
(DNA mismatch repair protein Mlh1/HexB family protein.)
genome : 37,083,784 - 37,092,263 (8,480)
query : 3 - 607 (605/607)
4 exons
identity = 0.995
5'(1.000;0.994;0.983;1.000)3'
coverage = 0.997
InterPro :
IPR011186 : DNA mismatch repair protein Mlh1/HexB
GO :
0005634 : Cellular Component : nucleus
0006298 : Biological Process : mismatch repair
0032300 : Cellular Component : mismatch repair complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto 12, cyto_nucl 9.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215421)
HIX0215421
HIT000484709
(
EU188666
)
(DNA mismatch repair protein Mlh1/HexB family protein.)
genome : 37,083,789 - 37,092,264 (8,476)
query : 1 - 532 (532/532)
4 exons
identity = 0.989
5'(0.971;0.958;0.991;1.000)3'
coverage = 1.000
InterPro :
IPR011186 : DNA mismatch repair protein Mlh1/HexB
GO :
0005634 : Cellular Component : nucleus
0006298 : Biological Process : mismatch repair
0032300 : Cellular Component : mismatch repair complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 19.5, cyto 15.5, nucl 12.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215421)
HIX0003169
HIT000202915 (
NM_006309
)
(Leucine-rich repeat flightless-interacting protein 2; LRR FLII-interacting protein 2;)
genome : 37,094,117 - 37,217,851 (123,735)
query : 1 - 3,814 (3,814/3,826)
29 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27, cyto 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003169)
HIX0003169
HIT000206597 (
NM_017724
)
(Leucine-rich repeat flightless-interacting protein 2 isoform 2.)
genome : 37,094,117 - 37,217,851 (123,735)
query : 1 - 2,851 (2,851/2,863)
14 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16, cyto 7, mito 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003169)
HIX0003169
HIT000559896 (
NM_001134369
)
(Leucine-rich repeat flightless-interacting protein 2 isoform 3.)
genome : 37,094,117 - 37,217,851 (123,735)
query : 1 - 2,923 (2,923/2,935)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.994;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto 8, mito 5, cyto_pero 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003169)
HIX0003169
HIT000519241 (
ENST00000421307
)
(Leucine-rich repeat flightless-interacting protein 2; LRR FLII-interacting protein 2;)
genome : 37,094,117 - 37,217,851 (123,735)
query : 1 - 3,814 (3,814/3,814)
29 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003169)
HIX0003169
HIT000007966
(
AK024692
)
(Leucine-rich repeat flightless-interacting protein 2 isoform 2.)
genome : 37,094,155 - 37,116,558 (22,404)
query : 1 - 1,831 (1,831/1,847)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR019139 : Leucine-rich repeat flightless-interacting protein
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 14.5, cyto 5.5, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003169)
HIX0003169
HIT000308685 (
ENST00000354379
)
(Leucine-rich repeat flightless-interacting protein 2 isoform 2.)
genome : 37,094,147 - 37,217,851 (123,705)
query : 1 - 2,821 (2,821/2,821)
14 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16, cyto 7, mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003169)
HIX0003169
HIT000130183 (
ENST00000336686
)
(Leucine-rich repeat flightless-interacting protein 2; LRR FLII-interacting protein 2;)
genome : 37,094,381 - 37,216,055 (121,675)
query : 1 - 3,208 (3,208/3,208)
28 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003169)
HIX0003169
HIT000009610
(
AK026336
)
(Leucine-rich repeat flightless-interacting protein 2 isoform 2.)
genome : 37,094,496 - 37,095,454 (959)
query : 15 - 973 (959/1,014)
1 exon
identity = 0.998
3'(0.998)5'
coverage = 0.986
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 10, mito 10, cyto_nucl 7.16667, nucl 6.5,
cyto 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003169)
HIX0003169
HIT000306692
(
CR749705
)
(Leucine-rich repeat flightless-interacting protein 2 isoform 2.)
genome : 37,094,498 - 37,106,825 (12,328)
query : 1 - 2,858 (2,858/2,890)
5 exons
identity = 0.998
3'(0.999;1.000;1.000;1.000;0.996)5'
coverage = 1.000
InterPro :
IPR019139 : Leucine-rich repeat flightless-interacting protein
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 14.5, cyto 5.5, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003169)
HIX0003169
HIT000002730
(
AK000255
)
(Leucine-rich repeat flightless-interacting protein 2 isoform 2.)
genome : 37,094,498 - 37,216,082 (121,585)
query : 1 - 2,156 (2,156/2,175)
13 exons
identity = 1.000
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16, cyto 7, mito 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003169)
HIX0003169
HIT000057441
(
BX648794
)
(Leucine-rich repeat flightless-interacting protein 2 isoform 3.)
genome : 37,094,498 - 37,138,130 (43,633)
query : 1 - 1,921 (1,921/1,938)
11 exons
identity = 0.999
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR019139 : Leucine-rich repeat flightless-interacting protein
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 26, nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003169)
HIX0003169
HIT000519210 (
ENST00000421276
)
(Leucine-rich repeat flightless-interacting protein 2 isoform 3.)
genome : 37,094,495 - 37,217,828 (123,334)
query : 1 - 2,522 (2,522/2,522)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto 8, mito 5, cyto_pero 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003169)
HIX0003169
HIT000565564 (
ENST00000460646
)
(Leucine-rich repeat flightless-interacting protein 2 isoform 2.)
genome : 37,094,495 - 37,106,825 (12,331)
query : 1 - 2,857 (2,857/2,857)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20.5, cyto_nucl 14.5, cyto 5.5, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003169)
HIX0003169
HIT000424311
(
AK291514
)
(Leucine-rich repeat flightless-interacting protein 2 isoform 3.)
genome : 37,094,953 - 37,217,828 (122,876)
query : 1 - 2,064 (2,064/2,064)
15 exons
identity = 0.998
3'(0.996;1.000;1.000;1.000;1.000;1.000;1.000;
0.994;1.000;1.000;1.000;1.000;1.000;1.000;
0.996)5'
coverage = 1.000
InterPro :
IPR019139 : Leucine-rich repeat flightless-interacting protein
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto 8, mito 5, cyto_pero 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003169)
HIX0204437
HIT000023014
(
AK098184
)
Representative transcript
(Leucine-rich repeat flightless-interacting protein 2 isoform 2.)
genome : 37,095,169 - 37,097,751 (2,583)
query : 1 - 2,583 (2,583/2,583)
1 exon
identity = 0.998
5'(0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, cyto_nucl 11, extr 10, nucl 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0204437)
HIX0003169
HIT000069903
(
AF115509
)
Representative transcript
(Leucine-rich repeat flightless-interacting protein 2; LRR FLII-interacting protein 2;)
genome : 37,095,177 - 37,216,055 (120,879)
query : 1 - 2,412 (2,412/2,412)
28 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR019139 : Leucine-rich repeat flightless-interacting protein
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27, cyto 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003169)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK078881
Danio
sp. (Zebrafish) : AY423017
Rattus
sp. (Rat) : BC097955
Bos
sp. (Cow) : BC111234
Gallus
sp. (Chicken) : CR390987
Monodelphis
sp. (Opossum) : ENSMODT00000016975
Pongo
sp. (Orangutan) : ENSPPYT00000016303
Tetraodon
sp. (Tetraodon) : GSTENT00024559001
Takifugu
sp. (Fugu) : SINFRUT00000135659
Macaca
sp. (Macaque) : XM_001087159
Equus
sp. (Horse) : XM_001489140
Pan
sp. (Chimpanzee) : XM_526171
Canis
sp. (Dog) : XM_542701
HIX0003169
HIT000044305
(
AK124432
)
(Leucine-rich repeat flightless-interacting protein 2 isoform 1.)
genome : 37,095,178 - 37,110,254 (15,077)
query : 1 - 3,586 (3,586/3,586)
6 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;0.999)5'
coverage = 1.000
InterPro :
IPR019139 : Leucine-rich repeat flightless-interacting protein
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, mito 10, cyto_nucl 10
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003169)
HIX0003169
HIT000599795 (
ENST00000496479
)
(Leucine-rich repeat flightless-interacting protein 2 isoform 1.)
genome : 37,095,178 - 37,110,254 (15,077)
query : 1 - 3,585 (3,585/3,585)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 22.5, cyto_nucl 14, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003169)
HIX0003169
HIT000053970
(
BC053668
)
(Leucine-rich repeat flightless-interacting protein 2 isoform 2.)
genome : 37,095,211 - 37,217,808 (122,598)
query : 1 - 1,714 (1,714/1,728)
14 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.996)5'
coverage = 1.000
InterPro :
IPR019139 : Leucine-rich repeat flightless-interacting protein
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16, cyto 7, mito 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003169)
HIX0003169
HIT000479773 (
ENST00000396428
)
(Leucine-rich repeat flightless-interacting protein 2 isoform 3.)
genome : 37,095,212 - 37,216,680 (121,469)
query : 1 - 1,791 (1,791/1,791)
19 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003169)
HIX0003169
HIT000496906
(
AK302282
)
(Leucine-rich repeat flightless-interacting protein 2 isoform 3.)
genome : 37,095,212 - 37,216,680 (121,469)
query : 1 - 1,791 (1,791/1,791)
19 exons
identity = 0.999
3'(0.996;1.000;1.000;1.000;0.980;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR019139 : Leucine-rich repeat flightless-interacting protein
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24, cyto 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003169)
HIX0003169
HIT000538164 (
ENST00000440230
)
(Leucine-rich repeat flightless-interacting protein 2 isoform 3.)
genome : 37,095,241 - 37,217,799 (122,559)
query : 1 - 1,989 (1,989/1,989)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto 8, mito 5, cyto_pero 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003169)
HIX0003169
HIT000538676 (
ENST00000440742
)
(Leucine-rich repeat flightless-interacting protein 2 isoform 2.)
genome : 37,100,350 - 37,125,241 (24,892)
query : 1 - 545 (545/545)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 24, nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003169)
HIX0003169
HIT000590957 (
ENST00000487246
)
(Leucine-rich repeat flightless-interacting protein 2 isoform 1.)
genome : 37,105,233 - 37,108,175 (2,943)
query : 1 - 644 (644/644)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, cyto_nucl 11, extr 9, cyto_mito 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003169)
HIX0003169
HIT000514359 (
ENST00000416425
)
(Leucine-rich repeat flightless-interacting protein 2 isoform 3.)
genome : 37,116,515 - 37,218,023 (101,509)
query : 1 - 961 (961/961)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16, mito 8, extr 3, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003169)
HIX0003169
HIT000585648 (
ENST00000481682
)
(Leucine-rich repeat flightless-interacting protein 2 isoform 3.)
genome : 37,125,136 - 37,153,406 (28,271)
query : 1 - 561 (561/561)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, nucl 11, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003169)
HIX0003169
HIT000008481
(
AK025207
)
(Conserved hypothetical protein.)
genome : 37,144,007 - 37,145,778 (1,772)
query : 1 - 1,772 (1,772/1,789)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, mito 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003169)
HIX0003169
HIT000566546 (
ENST00000461672
)
(Leucine-rich repeat flightless-interacting protein 2 isoform 2.)
genome : 37,162,955 - 37,225,180 (62,226)
query : 1 - 563 (563/563)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12.5, cyto_nucl 10, mito 7, cyto 6.5, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003169)
HIX0003169
HIT000536308 (
ENST00000438374
)
(Leucine-rich repeat flightless-interacting protein 2 isoform 1.)
genome : 37,163,157 - 37,217,742 (54,586)
query : 1 - 560 (560/560)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15, mito 10, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003169)
HIX0003169
HIT000550676 (
ENST00000452742
)
(Leucine-rich repeat flightless-interacting protein 2 isoform 2.)
genome : 37,170,554 - 37,216,706 (46,153)
query : 1 - 352 (352/352)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16, mito 9, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003169)
HIX0003169
HIT000534792 (
ENST00000436858
)
(Leucine-rich repeat flightless-interacting protein 2 isoform 2.)
genome : 37,170,554 - 37,216,700 (46,147)
query : 1 - 389 (389/389)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16, mito 9, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003169)
HIX0003169
HIT000532683 (
ENST00000434749
)
(Leucine-rich repeat flightless-interacting protein 2 isoform 2.)
genome : 37,170,554 - 37,216,626 (46,073)
query : 1 - 718 (718/718)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16, mito 9, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003169)
HIX0163666
HIT000522343 (
ENST00000424409
)
(Ubiquitin-conjugating enzyme E2 domain containing protein.)
genome : 37,176,149 - 37,176,593 (445)
query : 1 - 445 (445/445)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto_nucl 15, cyto 12, nucl 10, extr 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0163666)
HIX0163597
HIT000514470 (
ENST00000416536
)
(Conserved hypothetical protein.)
genome : 37,185,003 - 37,185,449 (447)
query : 1 - 447 (447/447)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0163597)
HIX0003169
HIT000586395 (
ENST00000482466
)
(Hypothetical short protein.)
genome : 37,190,418 - 37,217,548 (27,131)
query : 1 - 462 (462/462)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 17.6667, cyto 15.5, cyto_plas 10.1667,
nucl 8.5, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003169)
HIX0003169
HIT000594149 (
ENST00000490597
)
(Conserved hypothetical protein.)
genome : 37,211,824 - 37,217,793 (5,970)
query : 1 - 1,044 (1,044/1,044)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 11, mito 11, nucl 6, cyto_nucl 6, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003169)
HIX0003169
HIT000600131 (
ENST00000496825
)
(Electroneutral sodium bicarbonate exchanger 1 isoform e.)
genome : 37,214,261 - 37,217,635 (3,375)
query : 1 - 409 (409/409)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003169)
HIX0003169
HIT000587203 (
ENST00000483306
)
(Hypothetical short protein.)
genome : 37,215,610 - 37,217,818 (2,209)
query : 1 - 755 (755/755)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003169)
HIX0163854
HIT000545880 (
ENST00000447946
)
(Conserved hypothetical protein.)
genome : 37,237,695 - 37,238,157 (463)
query : 1 - 463 (463/463)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 23.5, cyto_mito 13.5, nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0163854)
HIX0024422
HIT000047441
(
AK127568
)
Representative transcript
(Conserved hypothetical protein.)
genome : 37,248,110 - 37,251,310 (3,201)
query : 1 - 3,199 (3,199/3,199)
1 exon
identity = 0.998
5'(0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13.5, nucl 11.5, cyto 10.5, extr 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024422)
HIX0119139
HIT000484890
(
EU358094
)
Representative transcript
(Hypothetical protein.)
genome : 37,258,270 - 37,259,477 (1,208)
query : 1 - 1,208 (1,208/1,208)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, nucl 10.5, cyto_nucl 8.16667, cyto 4.5,
cyto_pero 3.83333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0119139)
HIX0119139
HIT000484889
(
EU358093
)
(Hypothetical protein.)
genome : 37,258,529 - 37,259,478 (950)
query : 1 - 950 (950/950)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, nucl 10.5, cyto_nucl 8.16667, cyto 4.5,
cyto_pero 3.83333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0119139)
HIX0003170
HIT000039405
(
BC022164
)
Representative transcript
(Conserved hypothetical protein.)
genome : 37,283,280 - 37,285,668 (2,389)
query : 1 - 2,386 (2,386/2,404)
1 exon
identity = 0.998
3'(0.998)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, nucl 11.5, cyto_nucl 10.5, cyto 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003170)
HIX0003170
HIT000012891
(
AK056277
)
(Conserved hypothetical protein.)
genome : 37,283,303 - 37,285,686 (2,384)
query : 1 - 2,383 (2,383/2,383)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, nucl 11.5, cyto_nucl 10.5, cyto 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003170)
HIX0003170
HIT000119746 (
ENST00000313442
)
(Conserved hypothetical protein.)
genome : 37,283,303 - 37,285,686 (2,384)
query : 1 - 2,383 (2,383/2,383)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, nucl 11.5, cyto_nucl 10.5, cyto 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003170)
HIX0020830
HIT000315175 (
ENST00000361924
)
(Golgin subfamily A member 4; 256 kDa golgin; Golgin-245; Protein 72.1; Trans-Golgi p230;)
genome : 37,284,668 - 37,408,242 (123,575)
query : 1 - 7,772 (7,772/7,772)
24 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17.5, cyto_nucl 15.1667, cyto 11.5,
cyto_golg 7.33333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020830)
HIX0020830
HIT000199000 (
NM_002078
)
(Golgin subfamily A member 4; 256 kDa golgin; Golgin-245; Protein 72.1; Trans-Golgi p230;)
genome : 37,284,682 - 37,408,370 (123,689)
query : 1 - 7,886 (7,886/7,886)
24 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17.5, cyto_nucl 15.1667, cyto 11.5,
cyto_golg 7.33333
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020830)
HIX0020830
HIT000655000 (
NM_001172713
)
(Golgin subfamily A member 4 isoform 1.)
genome : 37,284,682 - 37,408,370 (123,689)
query : 1 - 7,868 (7,868/7,868)
23 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 15.1667, cyto 12.5,
cyto_golg 7.83333
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020830)
HIX0020830
HIT000098030
(
BC045543
)
(Golgin subfamily A member 4; 256 kDa golgin; Golgin-245; Protein 72.1; Trans-Golgi p230;)
genome : 37,284,682 - 37,361,872 (77,191)
query : 1 - 4,151 (4,151/4,184)
16 exons
identity = 0.999
5'(1.000;1.000;0.999;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21, cyto_nucl 15, nucl 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020830)
HIX0020830
HIT000533764 (
ENST00000435830
)
(Golgin subfamily A member 4; 256 kDa golgin; Golgin-245; Protein 72.1; Trans-Golgi p230;)
genome : 37,284,682 - 37,361,873 (77,192)
query : 1 - 4,152 (4,152/4,152)
16 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21, cyto_nucl 15, nucl 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020830)
HIX0020830
HIT000053459
(
BC050444
)
(Golgin subfamily A member 4; 256 kDa golgin; Golgin-245; Protein 72.1; Trans-Golgi p230;)
genome : 37,284,738 - 37,408,237 (123,500)
query : 1 - 1,448 (1,448/1,483)
4 exons
identity = 0.999
5'(1.000;1.000;1.000;0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, cyto 10, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020830)
HIX0020830
HIT000542816 (
ENST00000444882
)
(Golgin subfamily A member 4; 256 kDa golgin; Golgin-245; Protein 72.1; Trans-Golgi p230;)
genome : 37,284,738 - 37,408,240 (123,503)
query : 1 - 1,451 (1,451/1,451)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, cyto 10, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020830)
HIX0020830
HIT000310779 (
ENST00000356847
)
(Golgin subfamily A member 4 isoform 1.)
genome : 37,284,743 - 37,408,236 (123,494)
query : 1 - 7,673 (7,673/7,673)
23 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 15.1667, cyto 12.5,
cyto_golg 7.83333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020830)
HIX0020830
HIT000219779
(
U41740
)
Representative transcript
(Golgin subfamily A member 4; 256 kDa golgin; Golgin-245; Protein 72.1; Trans-Golgi p230;)
genome : 37,284,774 - 37,408,237 (123,464)
query : 18 - 7,679 (7,662/7,695)
24 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.999)3'
coverage = 0.998
InterPro :
IPR000237 : GRIP
GO :
0000042 : Biological Process : protein targeting to Golgi
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17.5, cyto_nucl 15.1667, cyto 11.5,
cyto_golg 7.33333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020830)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB179246
Mus
sp. (Mouse) : AF051357
Rattus
sp. (Rat) : BC085124
Gallus
sp. (Chicken) : CR386232
Canis
sp. (Dog) : ENSCAFT00000007747
Monodelphis
sp. (Opossum) : ENSMODT00000034444
Oryzias
sp. (Medaka) : ENSORLT00000013941
Pongo
sp. (Orangutan) : ENSPPYT00000016302
Tetraodon
sp. (Tetraodon) : GSTENT00030763001
Takifugu
sp. (Fugu) : SINFRUT00000145741
Equus
sp. (Horse) : XM_001489013
Danio
sp. (Zebrafish) : XM_001921263
Pan
sp. (Chimpanzee) : XM_516363
Bos
sp. (Cow) : XM_583499
HIX0020830
HIT000423347
(
AK290550
)
(Golgin subfamily A member 4; tGolgin-1;)
genome : 37,284,760 - 37,366,276 (81,517)
query : 1 - 3,181 (3,181/3,181)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 14.6667, cyto 12.5,
cyto_golg 7.83333, mito_nucl 7.83333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020830)
HIX0020830
HIT000090835
(
BC023648
)
(Golgin subfamily A member 4; 256 kDa golgin; Golgin-245; Protein 72.1; Trans-Golgi p230;)
genome : 37,284,761 - 37,356,995 (72,235)
query : 1 - 1,616 (1,616/1,633)
11 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;0.983;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21.5, cyto_nucl 15.6667, cyto 6.5, cyto_golg 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020830)
HIX0020830
HIT000548797 (
ENST00000450863
)
(Golgin subfamily A member 4; 256 kDa golgin; Golgin-245; Protein 72.1; Trans-Golgi p230;)
genome : 37,284,761 - 37,356,997 (72,237)
query : 1 - 1,617 (1,617/1,617)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14.1667, nucl 14, cyto 14
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020830)
HIX0020830
HIT000426295
(
AK307429
)
(Golgin subfamily A member 4; 256 kDa golgin; Golgin-245; Protein 72.1; Trans-Golgi p230;)
genome : 37,284,762 - 37,366,450 (81,689)
query : 1 - 2,036 (2,036/2,036)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, cyto_nucl 13.1667, cyto_golg 11.6667, nucl 4,
pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020830)
HIX0020830
HIT000526952 (
ENST00000429018
)
(Golgin subfamily A member 4; 256 kDa golgin; Golgin-245; Protein 72.1; Trans-Golgi p230;)
genome : 37,284,762 - 37,366,450 (81,689)
query : 1 - 2,036 (2,036/2,036)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, cyto_nucl 13.1667, cyto_golg 11.6667, nucl 4,
pero 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020830)
HIX0020830
HIT000494816
(
AK300192
)
(Golgin subfamily A member 4 isoform 1.)
genome : 37,284,762 - 37,360,686 (75,925)
query : 1 - 1,892 (1,892/1,894)
13 exons
identity = 0.999
5'(0.997;1.000;1.000;1.000;1.000;1.000;0.990;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17.5, cyto_nucl 15.1667, cyto 9.5, mito_nucl 9.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020830)
HIX0020830
HIT000329628
(
AB209693
)
(Golgin subfamily A member 4 isoform 1.)
genome : 37,284,767 - 37,408,236 (123,470)
query : 1 - 7,649 (7,649/7,649)
23 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18.5, cyto_nucl 16.1667, cyto 10.5,
cyto_golg 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020830)
HIX0020830
HIT000529039 (
ENST00000431105
)
(Golgin subfamily A member 4; 256 kDa golgin; Golgin-245; Protein 72.1; Trans-Golgi p230;)
genome : 37,284,829 - 37,323,476 (38,648)
query : 1 - 568 (568/568)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 14, cyto 10.5, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020830)
HIX0020830
HIT000323932
(
X82834
)
(Golgin subfamily A member 4; 256 kDa golgin; Golgin-245; Protein 72.1; Trans-Golgi p230;)
genome : 37,284,836 - 37,408,242 (123,407)
query : 2 - 7,604 (7,603/7,683)
24 exons
identity = 1.000
5'(0.996;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.987;1.000;
1.000;1.000;1.000)3'
coverage = 0.996
InterPro :
IPR000237 : GRIP
GO :
0000042 : Biological Process : protein targeting to Golgi
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17.5, cyto_nucl 15.1667, cyto 11.5,
cyto_golg 7.33333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020830)
HIX0020830
HIT000517111 (
ENST00000419177
)
(Golgin subfamily A member 4; 256 kDa golgin; Golgin-245; Protein 72.1; Trans-Golgi p230;)
genome : 37,284,915 - 37,336,568 (51,654)
query : 1 - 760 (760/760)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18.5, cyto_nucl 15, cyto 10.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020830)
HIX0030903
HIT000066043
(
AF075021
)
Representative transcript
(Conserved hypothetical protein.)
genome : 37,297,354 - 37,297,961 (608)
query : 1 - 608 (608/608)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030903)
HIX0020830
HIT000005663
(
AK022389
)
(Conserved hypothetical protein.)
genome : 37,313,625 - 37,315,590 (1,966)
query : 1 - 1,966 (1,966/1,966)
1 exon
identity = 0.997
5'(0.997)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 27, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020830)
HIX0200494
HIT000620919_01 (
ENST00000521604
)
(Transcription elongation factor A protein 1; Transcription elongation factor S-II protein 1; Transcription elongation factor TFIIS.o;)
genome : 37,317,028 - 37,319,643 (2,616)
query : 249 - 2,858 (2,610/2,858)
1 exon
identity = 0.992
5'(0.992)3'
coverage = 0.913
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200494)
HIX0200494
HIT000479748_02 (
ENST00000396401
)
(Transcription elongation factor A protein 1 isoform 2.)
genome : 37,317,028 - 37,319,643 (2,616)
query : 168 - 2,714 (2,547/2,718)
2 exons
identity = 0.989
5'(0.986;0.989)3'
coverage = 0.937
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200494)
HIX0200494
HIT000621927_01 (
ENST00000522635
)
(Transcription elongation factor A protein 1 isoform 2.)
genome : 37,317,040 - 37,319,022 (1,983)
query : 1 - 1,431 (1,431/1,432)
2 exons
identity = 0.992
5'(0.993;0.992)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29.5, cyto_nucl 17.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200494)
HIX0200494
HIT000009891
(
AK026617
)
(Transcription elongation factor A protein 1; Transcription elongation factor S-II protein 1; Transcription elongation factor TFIIS.o;)
genome : 37,317,050 - 37,318,805 (1,756)
query : 1 - 1,756 (1,756/1,774)
1 exon
identity = 0.995
5'(0.995)3'
coverage = 0.999
InterPro :
IPR001222 : Zinc finger, TFIIS-type
IPR003617 : Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type
IPR003618 : Transcription elongation factor S-II, central domain
IPR006289 : Transcription elongation factor, TFIIS
IPR017890 : Transcription elongation factor S-IIM
IPR017923 : Transcription factor IIS, N-terminal
GO :
0003676 : Molecular Function : nucleic acid binding
0003677 : Molecular Function : DNA binding
0005634 : Cellular Component : nucleus
0006351 : Biological Process : transcription, DNA-templated
0006355 : Biological Process : regulation of transcription, DNA-templated
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200494)
HIX0200494
HIT000518430_01 (
ENST00000420496
)
(Transcription elongation factor A protein 1 isoform 2.)
genome : 37,317,087 - 37,318,089 (1,003)
query : 1 - 940 (940/940)
2 exons
identity = 0.993
5'(0.994;0.992)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200494)
HIX0200494
HIT000423251
(
AK290454
)
Representative transcript
(Transcription elongation factor A protein 1; Transcription elongation factor S-II protein 1; Transcription elongation factor TFIIS.o;)
genome : 37,317,166 - 37,318,228 (1,063)
query : 1 - 1,063 (1,063/1,063)
1 exon
identity = 0.996
5'(0.996)3'
coverage = 1.000
InterPro :
IPR001222 : Zinc finger, TFIIS-type
IPR003617 : Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type
IPR003618 : Transcription elongation factor S-II, central domain
IPR006289 : Transcription elongation factor, TFIIS
IPR017890 : Transcription elongation factor S-IIM
IPR017923 : Transcription factor IIS, N-terminal
GO :
0003676 : Molecular Function : nucleic acid binding
0003677 : Molecular Function : DNA binding
0005634 : Cellular Component : nucleus
0006351 : Biological Process : transcription, DNA-templated
0006355 : Biological Process : regulation of transcription, DNA-templated
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200494)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB168552
Danio
sp. (Zebrafish) : BC053177
Mus
sp. (Mouse) : ENSMUST00000088647
Pan
sp. (Chimpanzee) : XM_001151630
Monodelphis
sp. (Opossum) : XM_001362195
Rattus
sp. (Rat) : XM_573712
HIX0200494
HIT000266765
(
BT019995
)
(Transcription elongation factor A protein 1; Transcription elongation factor S-II protein 1; Transcription elongation factor TFIIS.o;)
genome : 37,317,184 - 37,318,087 (904)
query : 1 - 904 (904/906)
1 exon
identity = 0.997
5'(0.997)3'
coverage = 0.998
InterPro :
IPR001222 : Zinc finger, TFIIS-type
IPR003617 : Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type
IPR003618 : Transcription elongation factor S-II, central domain
IPR006289 : Transcription elongation factor, TFIIS
IPR017890 : Transcription elongation factor S-IIM
IPR017923 : Transcription factor IIS, N-terminal
GO :
0003676 : Molecular Function : nucleic acid binding
0003677 : Molecular Function : DNA binding
0005634 : Cellular Component : nucleus
0006351 : Biological Process : transcription, DNA-templated
0006355 : Biological Process : regulation of transcription, DNA-templated
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200494)
HIX0200494
HIT000269089
(
CR542221
)
(Transcription elongation factor A protein 1; Transcription elongation factor S-II protein 1; Transcription elongation factor TFIIS.o;)
genome : 37,317,184 - 37,318,086 (903)
query : 1 - 903 (903/903)
1 exon
identity = 0.996
5'(0.996)3'
coverage = 1.000
InterPro :
IPR001222 : Zinc finger, TFIIS-type
IPR003617 : Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type
IPR003618 : Transcription elongation factor S-II, central domain
IPR006289 : Transcription elongation factor, TFIIS
IPR017890 : Transcription elongation factor S-IIM
IPR017923 : Transcription factor IIS, N-terminal
GO :
0003676 : Molecular Function : nucleic acid binding
0003677 : Molecular Function : DNA binding
0005634 : Cellular Component : nucleus
0006351 : Biological Process : transcription, DNA-templated
0006355 : Biological Process : regulation of transcription, DNA-templated
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200494)
HIX0020830
HIT000219169
(
U31906
)
(Golgin subfamily A member 4; 256 kDa golgin; Golgin-245; Protein 72.1; Trans-Golgi p230;)
genome : 37,323,674 - 37,408,241 (84,568)
query : 2 - 6,948 (6,947/6,965)
21 exons
identity = 0.999
5'(1.000;1.000;0.982;0.990;1.000;0.995;1.000;
1.000;0.994;1.000;1.000;0.999;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR000237 : GRIP
GO :
0000042 : Biological Process : protein targeting to Golgi
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto_nucl 15.6667, cyto 12,
cyto_golg 8.16667
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020830)
HIX0020830
HIT000535065 (
ENST00000437131
)
(Golgin subfamily A member 4; 256 kDa golgin; Golgin-245; Protein 72.1; Trans-Golgi p230;)
genome : 37,323,674 - 37,408,241 (84,568)
query : 1 - 6,947 (6,947/6,947)
21 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto_nucl 15.6667, cyto 12,
cyto_golg 8.16667
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020830)
HIX0020830
HIT000075859
(
AF273047
)
(Golgin subfamily A member 4; tGolgin-1;)
genome : 37,337,679 - 37,366,225 (28,547)
query : 1 - 2,066 (2,066/2,100)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17.5, cyto_nucl 16.3333, cyto 14,
cyto_golg 7.83333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020830)
HIX0020830
HIT000600804 (
ENST00000497537
)
(Golgin subfamily A member 4;)
genome : 37,363,080 - 37,365,112 (2,033)
query : 1 - 332 (332/332)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 14, nucl 7.5, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020830)
HIX0020830
HIT000323603
(
X76942
)
(Golgin subfamily A member 4; 256 kDa golgin; Golgin-245; Protein 72.1; Trans-Golgi p230;)
genome : 37,363,244 - 37,365,526 (2,283)
query : 1 - 582 (582/582)
2 exons
identity = 0.998
5'(1.000;0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 25, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020830)
HIX0020830
HIT000255183
(
AY531221
)
(Golgin subfamily A member 4; 256 kDa golgin; Golgin-245; Protein 72.1; Trans-Golgi p230;)
genome : 37,368,471 - 37,408,236 (39,766)
query : 1 - 2,237 (2,237/2,237)
10 exons
identity = 0.999
5'(0.998;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR000237 : GRIP
GO :
0000042 : Biological Process : protein targeting to Golgi
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23, cyto_nucl 16.5, nucl 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020830)
HIX0020830
HIT000601478 (
ENST00000498250
)
(Golgin subfamily A member 4; 256 kDa golgin; Golgin-245; Protein 72.1; Trans-Golgi p230;)
genome : 37,369,256 - 37,370,830 (1,575)
query : 1 - 560 (560/560)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23, cyto_nucl 13.5, extr 4, nucl 2, mito 2,
extr_plas 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020830)
HIX0031150
HIT000097965
(
BC044909
)
Representative transcript
(Conserved hypothetical protein.)
genome : 37,371,052 - 37,372,522 (1,471)
query : 1 - 1,471 (1,471/1,486)
1 exon
identity = 0.998
5'(0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, nucl 6.5, cyto_nucl 6.5, cyto 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0031150)
HIX0204443
HIT000055212
(
BX640663
)
Representative transcript
(Conserved hypothetical protein.)
genome : 37,400,868 - 37,408,237 (7,370)
query : 20 - 5,373 (5,354/5,373)
2 exons
identity = 0.996
3'(0.995;0.997)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, cyto_nucl 11, extr 8, cyto 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0204443)
HIX0024496
HIT000523866 (
ENST00000425932
)
(AP20 region protein 1 isoform E.)
genome : 37,427,760 - 37,459,592 (31,833)
query : 1 - 1,528 (1,528/1,528)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 27, cyto_nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024496)
HIX0024496
HIT000248232
(
AJ493605
)
(AP20 region protein 1 isoform E.)
genome : 37,427,760 - 37,459,044 (31,285)
query : 1 - 980 (980/981)
4 exons
identity = 0.997
5'(1.000;1.000;1.000;0.994)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 23, extr 5, cyto_nucl 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024496)
HIX0024496
HIT000336281
(
BC100859
)
(Conserved hypothetical protein.)
genome : 37,427,800 - 37,458,584 (30,785)
query : 1 - 784 (784/784)
6 exons
identity = 0.999
5'(1.000;0.992;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, nucl 5.5, cyto_nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024496)
HIX0024496
HIT000336282
(
BC100860
)
(Conserved hypothetical protein.)
genome : 37,427,800 - 37,458,584 (30,785)
query : 1 - 551 (551/551)
5 exons
identity = 0.978
5'(1.000;0.976;0.925;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, nucl 9.5, cyto_nucl 7.5, cyto 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024496)
HIX0024496
HIT000336283
(
BC100861
)
(Conserved hypothetical protein.)
genome : 37,427,800 - 37,458,584 (30,785)
query : 1 - 663 (663/663)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, nucl 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024496)
HIX0024496
HIT000336284
(
BC100862
)
(Conserved hypothetical protein.)
genome : 37,427,800 - 37,458,584 (30,785)
query : 1 - 784 (784/784)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, nucl 5.5, cyto_nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024496)
HIX0024496
HIT000340604
(
BC113895
)
(Conserved hypothetical protein.)
genome : 37,427,800 - 37,458,584 (30,785)
query : 1 - 663 (663/663)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, nucl 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024496)
HIX0024496
HIT000386668
(
BC112433
)
(Conserved hypothetical protein.)
genome : 37,427,800 - 37,458,584 (30,785)
query : 1 - 480 (480/480)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, nucl 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024496)
HIX0024496
HIT000248226
(
AJ493599
)
Representative transcript
(AP20 region protein 1 isoform E.)
genome : 37,440,653 - 37,476,988 (36,336)
query : 1 - 1,846 (1,846/1,868)
7 exons
identity = 0.998
5'(1.000;0.994;1.000;1.000;1.000;1.000;0.996)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 16, cyto 8.5, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024496)
Ortholog candidate ( ->
Evola
)
Pongo
sp. (Orangutan) : ENSPPYT00000016301
Pan
sp. (Chimpanzee) : ENSPTRT00000027580
HIX0024496
HIT000248228
(
AJ493601
)
(AP20 region protein 1 isoform B.)
genome : 37,440,653 - 37,476,988 (36,336)
query : 1 - 1,399 (1,399/1,421)
4 exons
identity = 0.999
5'(1.000;0.994;1.000;0.998)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 14, mito 13, plas 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024496)
HIX0024496
HIT000248229
(
AJ493602
)
(Conserved hypothetical protein.)
genome : 37,440,653 - 37,476,988 (36,336)
query : 1 - 1,496 (1,496/1,518)
4 exons
identity = 0.997
5'(1.000;0.988;1.000;0.997)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16, cyto_nucl 13.3333, cyto 8.5, extr 7,
cyto_pero 5.16667
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024496)
HIX0024496
HIT000248227
(
AJ493600
)
(Conserved hypothetical protein.)
genome : 37,440,653 - 37,476,988 (36,336)
query : 1 - 1,860 (1,860/1,874)
6 exons
identity = 0.997
5'(1.000;0.994;1.000;1.000;1.000;0.992)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, cyto_nucl 12.6667, extr 10,
cyto_pero 8.66667, nucl 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024496)
HIX0024496
HIT000125519 (
ENST00000328376
)
(AP20 region protein 1;)
genome : 37,440,653 - 37,476,988 (36,336)
query : 1 - 1,859 (1,859/1,859)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 20, nucl 4, cyto 4, cyto_nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024496)
HIX0024496
HIT000127830 (
ENST00000332506
)
(AP20 region protein 1 isoform E.)
genome : 37,440,653 - 37,476,988 (36,336)
query : 1 - 1,845 (1,845/1,845)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 16, cyto 8.5, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024496)
HIX0024496
HIT000570868 (
ENST00000466204
)
(AP20 region protein 1 isoform B.)
genome : 37,440,653 - 37,476,988 (36,336)
query : 1 - 1,398 (1,398/1,398)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 14, mito 13, plas 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024496)
HIX0024496
HIT000585372 (
ENST00000481400
)
(Conserved hypothetical protein.)
genome : 37,440,653 - 37,476,988 (36,336)
query : 1 - 1,495 (1,495/1,495)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 13.5, mito 7, nucl 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024496)
HIX0024496
HIT000549951 (
ENST00000452017
)
(Conserved hypothetical protein.)
genome : 37,440,653 - 37,458,984 (18,332)
query : 1 - 1,206 (1,206/1,216)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.992
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, nucl 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024496)
HIX0024496
HIT000318061 (
NM_178339
)
(AP20 region protein 1;)
genome : 37,440,968 - 37,476,988 (36,021)
query : 1 - 1,544 (1,544/1,558)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 20, nucl 4, cyto 4, cyto_nucl 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024496)
HIX0024496
HIT000318064 (
NM_178342
)
(AP20 region protein 1 isoform E.)
genome : 37,440,968 - 37,459,865 (18,898)
query : 1 - 1,772 (1,772/1,807)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 27, cyto_nucl 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024496)
HIX0024496
HIT000248231
(
AJ493604
)
(Conserved hypothetical protein.)
genome : 37,440,984 - 37,458,273 (17,290)
query : 1 - 569 (569/589)
3 exons
identity = 0.998
5'(1.000;0.994;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, nucl 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024496)
HIX0024496
HIT000248230
(
AJ493603
)
(AP20 region protein 1 isoform E.)
genome : 37,441,062 - 37,459,865 (18,804)
query : 1 - 1,682 (1,682/1,717)
5 exons
identity = 0.996
5'(1.000;0.994;1.000;1.000;0.996)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 27, cyto_nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024496)
HIX0024496
HIT000524012 (
ENST00000426078
)
(AP20 region protein 1 isoform E.)
genome : 37,441,062 - 37,459,865 (18,804)
query : 1 - 1,678 (1,678/1,678)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 27, cyto_nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024496)
HIX0024496
HIT000390746
(
BC132691
)
(AP20 region protein 1 isoform E.)
genome : 37,452,700 - 37,459,592 (6,893)
query : 1 - 1,364 (1,364/1,364)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 27, cyto_nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024496)
HIX0024496
HIT000391074
(
BC133024
)
(AP20 region protein 1 isoform E.)
genome : 37,452,700 - 37,459,592 (6,893)
query : 1 - 1,355 (1,355/1,355)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 27, cyto_nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024496)
HIX0024496
HIT000502788
(
BC144376
)
(AP20 region protein 1 isoform E.)
genome : 37,452,700 - 37,459,592 (6,893)
query : 1 - 1,355 (1,355/1,355)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 27, cyto_nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024496)
HIX0024496
HIT000502789
(
BC144377
)
(AP20 region protein 1 isoform E.)
genome : 37,452,700 - 37,459,592 (6,893)
query : 1 - 1,369 (1,369/1,369)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 27, cyto_nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024496)
HIX0024496
HIT000523498 (
ENST00000425564
)
(AP20 region protein 1 isoform E.)
genome : 37,452,700 - 37,459,592 (6,893)
query : 1 - 1,364 (1,364/1,364)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 27, cyto_nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024496)
HIX0215348
HIT000040976
(
BC030198
)
Representative transcript
(Integrin alpha chain family protein.)
genome : 37,493,606 - 37,671,010 (177,405)
query : 1 - 2,282 (2,282/2,314)
16 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.994;
1.000)3'
coverage = 1.000
InterPro :
IPR000413 : Integrin alpha chain
IPR013519 : Integrin alpha beta-propellor
IPR013649 : Integrin alpha-2
GO :
0007155 : Biological Process : cell adhesion
0008305 : Cellular Component : integrin complex
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 9, E.R. 8, pero 5, lyso 4, golg 4, E.R._mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215348)
HIX0215348
HIT000520375 (
ENST00000422441
)
(Integrin alpha chain family protein.)
genome : 37,493,606 - 37,671,010 (177,405)
query : 1 - 2,282 (2,282/2,282)
16 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 9, E.R. 8, pero 5, lyso 4, golg 4, E.R._mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215348)
HIX0003168
HIT000104399 (
ENST00000231790
)
(DNA mismatch repair protein Mlh1; MutL protein homolog 1;)
genome : 37,034,823 - 37,092,409 (57,587)
query : 1 - 2,752 (2,752/2,752)
19 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003168)
HIX0003168
HIT000724175 (
NM_001258271
)
(DNA mismatch repair protein Mlh1; MutL protein homolog 1;)
genome : 37,034,841 - 37,092,336 (57,496)
query : 1 - 2,454 (2,454/2,471)
17 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003168)
HIX0003168
HIT000724177 (
NM_001258273
)
(DNA mismatch repair protein Mlh1 isoform 3.)
genome : 37,034,841 - 37,092,336 (57,496)
query : 1 - 2,570 (2,570/2,587)
18 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 11, extr 7, mito 5, cyto 3.5,
extr_plas 3.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003168)
HIX0003168
HIT000197295 (
NM_000249
)
(DNA mismatch repair protein Mlh1; MutL protein homolog 1;)
genome : 37,034,841 - 37,092,337 (57,497)
query : 1 - 2,662 (2,662/2,662)
19 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003168)
HIX0003168
HIT000032957
(
BC006850
)
(DNA mismatch repair protein Mlh1; MutL protein homolog 1;)
genome : 37,034,989 - 37,092,336 (57,348)
query : 1 - 2,513 (2,513/2,530)
19 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR002099 : DNA mismatch repair protein family
IPR003594 : Histidine kinase-like ATPase, C-terminal domain
IPR011186 : DNA mismatch repair protein Mlh1/HexB
IPR013507 : DNA mismatch repair protein, C-terminal
IPR014721 : Ribosomal protein S5 domain 2-type fold, subgroup
IPR014762 : DNA mismatch repair, conserved site
IPR020568 : Ribosomal protein S5 domain 2-type fold
GO :
0005524 : Molecular Function : ATP binding
0005634 : Cellular Component : nucleus
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
0032300 : Cellular Component : mismatch repair complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003168)
HIX0003168
HIT000217662
(
U07418
)
(DNA mismatch repair protein Mlh1; MutL protein homolog 1;)
genome : 37,034,998 - 37,092,335 (57,338)
query : 1 - 2,503 (2,503/2,503)
19 exons
identity = 0.999
5'(0.994;1.000;1.000;1.000;1.000;1.000;1.000;
0.989;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR002099 : DNA mismatch repair protein family
IPR003594 : Histidine kinase-like ATPase, C-terminal domain
IPR011186 : DNA mismatch repair protein Mlh1/HexB
IPR013507 : DNA mismatch repair protein, C-terminal
IPR014721 : Ribosomal protein S5 domain 2-type fold, subgroup
IPR014762 : DNA mismatch repair, conserved site
IPR020568 : Ribosomal protein S5 domain 2-type fold
GO :
0005524 : Molecular Function : ATP binding
0005634 : Cellular Component : nucleus
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
0032300 : Cellular Component : mismatch repair complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003168)
HIX0003168
HIT000554938 (
ENST00000457004
)
(DNA mismatch repair protein Mlh1 isoform 2.)
genome : 37,035,007 - 37,055,985 (20,979)
query : 1 - 668 (668/668)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23.5, cyto_nucl 15, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003168)
HIX0003168
HIT000530233 (
ENST00000432299
)
(DNA mismatch repair protein Mlh1 isoform 2.)
genome : 37,035,015 - 37,053,590 (18,576)
query : 1 - 928 (928/928)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003168)
HIX0003168
HIT000217657
(
U07343
)
(DNA mismatch repair protein Mlh1; MutL protein homolog 1;)
genome : 37,035,018 - 37,092,336 (57,319)
query : 1 - 2,484 (2,484/2,484)
19 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR002099 : DNA mismatch repair protein family
IPR003594 : Histidine kinase-like ATPase, C-terminal domain
IPR011186 : DNA mismatch repair protein Mlh1/HexB
IPR013507 : DNA mismatch repair protein, C-terminal
IPR014721 : Ribosomal protein S5 domain 2-type fold, subgroup
IPR014762 : DNA mismatch repair, conserved site
IPR020568 : Ribosomal protein S5 domain 2-type fold
GO :
0005524 : Molecular Function : ATP binding
0005634 : Cellular Component : nucleus
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
0032300 : Cellular Component : mismatch repair complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003168)
HIX0003168
HIT000499877
(
AK316264
)
(DNA mismatch repair protein Mlh1 isoform 3.)
genome : 37,035,024 - 37,092,211 (57,188)
query : 1 - 2,262 (2,262/2,262)
18 exons
identity = 0.999
5'(1.000;1.000;1.000;0.986;1.000;1.000;0.989;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR011186 : DNA mismatch repair protein Mlh1/HexB
IPR013507 : DNA mismatch repair protein, C-terminal
IPR014721 : Ribosomal protein S5 domain 2-type fold, subgroup
IPR020568 : Ribosomal protein S5 domain 2-type fold
GO :
0005524 : Molecular Function : ATP binding
0005634 : Cellular Component : nucleus
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
0032300 : Cellular Component : mismatch repair complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 11, extr 7, mito 5, cyto 3.5,
extr_plas 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003168)
HIX0003168
HIT000540183 (
ENST00000442249
)
(DNA mismatch repair protein Mlh1 isoform 2.)
genome : 37,035,024 - 37,053,547 (18,524)
query : 1 - 558 (558/558)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003168)
HIX0003168
HIT000431475
(
AK312609
)
(DNA mismatch repair protein Mlh1; MutL protein homolog 1;)
genome : 37,035,025 - 37,092,144 (57,120)
query : 1 - 2,285 (2,285/2,285)
19 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.997;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR002099 : DNA mismatch repair protein family
IPR003594 : Histidine kinase-like ATPase, C-terminal domain
IPR011186 : DNA mismatch repair protein Mlh1/HexB
IPR013507 : DNA mismatch repair protein, C-terminal
IPR014721 : Ribosomal protein S5 domain 2-type fold, subgroup
IPR014762 : DNA mismatch repair, conserved site
IPR020568 : Ribosomal protein S5 domain 2-type fold
GO :
0005524 : Molecular Function : ATP binding
0005634 : Cellular Component : nucleus
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
0032300 : Cellular Component : mismatch repair complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003168)
HIX0003168
HIT000330590
(
AK222810
)
(DNA mismatch repair protein Mlh1; MutL protein homolog 1;)
genome : 37,035,036 - 37,092,331 (57,296)
query : 3 - 2,463 (2,461/2,478)
19 exons
identity = 0.998
5'(1.000;0.989;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.997;1.000;0.991;
1.000;1.000;0.989;1.000;1.000)3'
coverage = 0.999
InterPro :
IPR002099 : DNA mismatch repair protein family
IPR003594 : Histidine kinase-like ATPase, C-terminal domain
IPR011186 : DNA mismatch repair protein Mlh1/HexB
IPR013507 : DNA mismatch repair protein, C-terminal
IPR014721 : Ribosomal protein S5 domain 2-type fold, subgroup
IPR014762 : DNA mismatch repair, conserved site
IPR020568 : Ribosomal protein S5 domain 2-type fold
GO :
0005524 : Molecular Function : ATP binding
0005634 : Cellular Component : nucleus
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
0032300 : Cellular Component : mismatch repair complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003168)
HIX0003168
HIT000255118
(
AY517558
)
(DNA mismatch repair protein Mlh1; MutL protein homolog 1;)
genome : 37,035,041 - 37,092,330 (57,290)
query : 1 - 2,452 (2,452/2,452)
19 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.991;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.992)3'
coverage = 1.000
InterPro :
IPR002099 : DNA mismatch repair protein family
IPR003594 : Histidine kinase-like ATPase, C-terminal domain
IPR011186 : DNA mismatch repair protein Mlh1/HexB
IPR013507 : DNA mismatch repair protein, C-terminal
IPR014721 : Ribosomal protein S5 domain 2-type fold, subgroup
IPR014762 : DNA mismatch repair, conserved site
IPR020568 : Ribosomal protein S5 domain 2-type fold
GO :
0005524 : Molecular Function : ATP binding
0005634 : Cellular Component : nucleus
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
0032300 : Cellular Component : mismatch repair complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003168)
HIX0003168
HIT000430192
(
AK311326
)
(DNA mismatch repair protein Mlh1 isoform 2.)
genome : 37,035,061 - 37,053,590 (18,530)
query : 4 - 885 (882/896)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 0.984
InterPro :
IPR003594 : Histidine kinase-like ATPase, C-terminal domain
IPR011186 : DNA mismatch repair protein Mlh1/HexB
IPR014762 : DNA mismatch repair, conserved site
GO :
0005524 : Molecular Function : ATP binding
0005634 : Cellular Component : nucleus
0006298 : Biological Process : mismatch repair
0032300 : Cellular Component : mismatch repair complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003168)
HIX0003168
HIT000329783
(
AB209848
)
(DNA mismatch repair protein Mlh1; MutL protein homolog 1;)
genome : 37,035,064 - 37,092,335 (57,272)
query : 1 - 2,231 (2,231/2,231)
17 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;0.989;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR002099 : DNA mismatch repair protein family
IPR003594 : Histidine kinase-like ATPase, C-terminal domain
IPR011186 : DNA mismatch repair protein Mlh1/HexB
IPR013507 : DNA mismatch repair protein, C-terminal
IPR014721 : Ribosomal protein S5 domain 2-type fold, subgroup
IPR014762 : DNA mismatch repair, conserved site
IPR020568 : Ribosomal protein S5 domain 2-type fold
GO :
0005524 : Molecular Function : ATP binding
0005634 : Cellular Component : nucleus
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
0032300 : Cellular Component : mismatch repair complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003168)
HIX0003168
HIT000554610 (
ENST00000456676
)
(DNA mismatch repair protein Mlh1; MutL protein homolog 1;)
genome : 37,035,064 - 37,092,335 (57,272)
query : 1 - 2,230 (2,230/2,230)
17 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003168)
HIX0003168
HIT000057491
(
BX648844
)
Representative transcript
(DNA mismatch repair protein Mlh1 isoform 3.)
genome : 37,035,267 - 37,092,337 (57,071)
query : 3 - 2,611 (2,609/2,633)
20 exons
identity = 0.998
5'(1.000;1.000;0.993;1.000;1.000;1.000;0.989;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.994)3'
coverage = 0.998
InterPro :
IPR011186 : DNA mismatch repair protein Mlh1/HexB
IPR013507 : DNA mismatch repair protein, C-terminal
IPR014721 : Ribosomal protein S5 domain 2-type fold, subgroup
IPR020568 : Ribosomal protein S5 domain 2-type fold
GO :
0005524 : Molecular Function : ATP binding
0005634 : Cellular Component : nucleus
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
0032300 : Cellular Component : mismatch repair complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 11, extr 7, mito 5, cyto 3.5,
extr_plas 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003168)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : BC021815
Danio
sp. (Zebrafish) : BC057507
Bos
sp. (Cow) : BC114810
Equus
sp. (Horse) : ENSECAT00000002892
Monodelphis
sp. (Opossum) : ENSMODT00000017006
Pongo
sp. (Orangutan) : ENSPPYT00000016304
Tetraodon
sp. (Tetraodon) : GSTENT00024558001
Takifugu
sp. (Fugu) : SINFRUT00000135651
Rattus
sp. (Rat) : U80054
Macaca
sp. (Macaque) : XM_001087274
Pan
sp. (Chimpanzee) : XM_001170253
Canis
sp. (Dog) : XM_534219
HIX0003168
HIT000556139 (
ENST00000458205
)
(DNA mismatch repair protein Mlh1 isoform 3.)
genome : 37,035,267 - 37,092,337 (57,071)
query : 1 - 2,608 (2,608/2,608)
20 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 11, extr 7, mito 5, cyto 3.5,
extr_plas 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003168)
HIX0003168
HIT000654425 (
NM_001167617
)
(DNA mismatch repair protein Mlh1 isoform 2.)
genome : 37,035,268 - 37,092,336 (57,069)
query : 1 - 2,456 (2,456/2,473)
19 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15, nucl 13.5, cyto 13.5, extr 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003168)
HIX0003168
HIT000654426 (
NM_001167618
)
(DNA mismatch repair protein Mlh1 isoform 3.)
genome : 37,035,268 - 37,092,336 (57,069)
query : 1 - 2,456 (2,456/2,473)
19 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 11, extr 7, mito 5, cyto 3.5,
extr_plas 3.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003168)
HIX0003168
HIT000654427 (
NM_001167619
)
(DNA mismatch repair protein Mlh1 isoform 3.)
genome : 37,035,268 - 37,092,336 (57,069)
query : 1 - 2,369 (2,369/2,386)
18 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 11, extr 7, mito 5, cyto 3.5,
extr_plas 3.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003168)
HIX0003168
HIT000724178 (
NM_001258274
)
(DNA mismatch repair protein Mlh1 isoform 3.)
genome : 37,035,268 - 37,092,336 (57,069)
query : 1 - 2,606 (2,606/2,623)
20 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 11, extr 7, mito 5, cyto 3.5,
extr_plas 3.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003168)
HIX0003168
HIT000638522 (
ENST00000539477
)
(DNA mismatch repair protein Mlh1 isoform 3.)
genome : 37,035,268 - 37,092,333 (57,066)
query : 1 - 2,366 (2,366/2,366)
18 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 11, extr 7, mito 5, cyto 3.5,
extr_plas 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003168)
HIX0003168
HIT000489983
(
AK295359
)
(DNA mismatch repair protein Mlh1 isoform 3.)
genome : 37,035,289 - 37,092,197 (56,909)
query : 1 - 2,296 (2,296/2,296)
19 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;0.986;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR011186 : DNA mismatch repair protein Mlh1/HexB
IPR013507 : DNA mismatch repair protein, C-terminal
IPR014721 : Ribosomal protein S5 domain 2-type fold, subgroup
IPR020568 : Ribosomal protein S5 domain 2-type fold
GO :
0005524 : Molecular Function : ATP binding
0005634 : Cellular Component : nucleus
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
0032300 : Cellular Component : mismatch repair complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 11, extr 7, mito 5, cyto 3.5,
extr_plas 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003168)
HIX0003168
HIT000553379 (
ENST00000455445
)
(DNA mismatch repair protein Mlh1 isoform 3.)
genome : 37,035,289 - 37,092,197 (56,909)
query : 1 - 2,296 (2,296/2,296)
19 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 11, extr 7, mito 5, cyto 3.5,
extr_plas 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003168)
HIX0003168
HIT000493207
(
AK298583
)
(DNA mismatch repair protein Mlh1 isoform 3.)
genome : 37,035,295 - 37,092,335 (57,041)
query : 1 - 2,428 (2,428/2,428)
19 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.997;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR003594 : Histidine kinase-like ATPase, C-terminal domain
IPR011186 : DNA mismatch repair protein Mlh1/HexB
IPR013507 : DNA mismatch repair protein, C-terminal
IPR014721 : Ribosomal protein S5 domain 2-type fold, subgroup
IPR020568 : Ribosomal protein S5 domain 2-type fold
GO :
0005524 : Molecular Function : ATP binding
0005634 : Cellular Component : nucleus
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
0032300 : Cellular Component : mismatch repair complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15, nucl 13.5, cyto 13.5, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003168)
HIX0003168
HIT000533110 (
ENST00000435176
)
(DNA mismatch repair protein Mlh1 isoform 2.)
genome : 37,035,295 - 37,092,335 (57,041)
query : 1 - 2,428 (2,428/2,428)
19 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 15, nucl 13.5, cyto 13.5, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003168)
HIX0003168
HIT000499687
(
AK316074
)
(DNA mismatch repair protein Mlh1 isoform 3.)
genome : 37,035,295 - 37,092,274 (56,980)
query : 1 - 2,280 (2,280/2,280)
18 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.989;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.994;0.989;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR011186 : DNA mismatch repair protein Mlh1/HexB
IPR013507 : DNA mismatch repair protein, C-terminal
IPR014721 : Ribosomal protein S5 domain 2-type fold, subgroup
IPR020568 : Ribosomal protein S5 domain 2-type fold
GO :
0005524 : Molecular Function : ATP binding
0005634 : Cellular Component : nucleus
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
0032300 : Cellular Component : mismatch repair complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 11, extr 7, mito 5, cyto 3.5,
extr_plas 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003168)
HIX0003168
HIT000539199 (
ENST00000441265
)
(DNA mismatch repair protein Mlh1 isoform 3.)
genome : 37,035,295 - 37,061,954 (26,660)
query : 1 - 917 (917/917)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_mito 9.66667, mito 9.5, cyto 9, extr 8,
cyto_nucl 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003168)
HIX0003168
HIT000492948
(
AK298324
)
(DNA mismatch repair protein Mlh1 isoform 3.)
genome : 37,035,317 - 37,092,311 (56,995)
query : 1 - 2,382 (2,382/2,382)
19 exons
identity = 0.999
5'(0.985;1.000;1.000;1.000;1.000;0.989;1.000;
0.989;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR011186 : DNA mismatch repair protein Mlh1/HexB
IPR013507 : DNA mismatch repair protein, C-terminal
IPR014721 : Ribosomal protein S5 domain 2-type fold, subgroup
IPR020568 : Ribosomal protein S5 domain 2-type fold
GO :
0005524 : Molecular Function : ATP binding
0005634 : Cellular Component : nucleus
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
0032300 : Cellular Component : mismatch repair complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 11, extr 7, mito 5, cyto 3.5,
extr_plas 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003168)
HIX0003168
HIT000430231
(
AK311365
)
(DNA mismatch repair protein Mlh1; MutL protein homolog 1;)
genome : 37,035,317 - 37,061,920 (26,604)
query : 1 - 951 (951/951)
11 exons
identity = 0.997
5'(1.000;1.000;1.000;1.000;0.959;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR003594 : Histidine kinase-like ATPase, C-terminal domain
IPR011186 : DNA mismatch repair protein Mlh1/HexB
IPR013507 : DNA mismatch repair protein, C-terminal
IPR014721 : Ribosomal protein S5 domain 2-type fold, subgroup
IPR020568 : Ribosomal protein S5 domain 2-type fold
GO :
0005524 : Molecular Function : ATP binding
0005634 : Cellular Component : nucleus
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
0032300 : Cellular Component : mismatch repair complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 17.5, nucl 14, cyto 13, extr 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003168)
HIX0003168
HIT000497431
(
AK302807
)
(DNA mismatch repair protein Mlh1 isoform 2.)
genome : 37,035,339 - 37,107,380 (72,042)
query : 1 - 2,303 (2,303/2,303)
19 exons
identity = 1.000
5'(1.000;1.000;0.990;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR002099 : DNA mismatch repair protein family
IPR003594 : Histidine kinase-like ATPase, C-terminal domain
IPR011186 : DNA mismatch repair protein Mlh1/HexB
IPR013507 : DNA mismatch repair protein, C-terminal
IPR014721 : Ribosomal protein S5 domain 2-type fold, subgroup
IPR014762 : DNA mismatch repair, conserved site
IPR020568 : Ribosomal protein S5 domain 2-type fold
GO :
0005524 : Molecular Function : ATP binding
0005634 : Cellular Component : nucleus
0006298 : Biological Process : mismatch repair
0030983 : Molecular Function : mismatched DNA binding
0032300 : Cellular Component : mismatch repair complex
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003168)
HIX0003168
HIT000635423 (
ENST00000536378
)
(DNA mismatch repair protein Mlh1; MutL protein homolog 1;)
genome : 37,035,339 - 37,107,380 (72,042)
query : 1 - 2,303 (2,303/2,303)
19 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003168)
HIX0003168
HIT000484713
(
EU188670
)
(DNA mismatch repair protein Mlh1; MutL protein homolog 1;)
genome : 37,055,917 - 37,092,232 (36,316)
query : 13 - 1,287 (1,275/1,287)
8 exons
identity = 0.995
5'(0.983;0.995;0.993;1.000;1.000;1.000;1.000;
0.996)3'
coverage = 0.991
InterPro :
IPR014721 : Ribosomal protein S5 domain 2-type fold, subgroup
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto_nucl 7, nucl 5.5, cyto 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003168)
HIX0003168
HIT000484719
(
EU188676
)
(DNA mismatch repair protein Mlh1; MutL protein homolog 1;)
genome : 37,055,928 - 37,092,198 (36,271)
query : 1 - 709 (709/709)
5 exons
identity = 0.972
5'(0.982;0.946;0.989;1.000;0.964)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto 11.5, cyto_nucl 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003168)
HIX0003168
HIT000484716
(
EU188673
)
(DNA mismatch repair protein Mlh1; MutL protein homolog 1;)
genome : 37,067,404 - 37,092,263 (24,860)
query : 3 - 654 (652/654)
4 exons
identity = 0.977
5'(0.939;0.967;0.974;0.997)3'
coverage = 0.997
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, cyto 9, mito_nucl 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003168)
HIX0003172
HIT000109427 (
ENST00000264741
)
(Integrin alpha-9; Integrin alpha-RLC; Precursor;)
genome : 37,493,610 - 37,865,005 (371,396)
query : 1 - 7,889 (7,889/7,889)
28 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 19, pero 5, E.R. 3, mito_pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003172)
HIX0003172
HIT000101125
(
D25303
)
Representative transcript
(Integrin alpha-9; Integrin alpha-RLC; Precursor;)
genome : 37,493,813 - 37,860,937 (367,125)
query : 2 - 3,588 (3,587/3,588)
28 exons
identity = 0.989
5'(0.987;1.000;1.000;0.992;0.985;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.994;
1.000)3'
coverage = 1.000
InterPro :
IPR000413 : Integrin alpha chain
IPR013519 : Integrin alpha beta-propellor
IPR013649 : Integrin alpha-2
IPR018184 : Integrin alpha chain, C-terminal cytoplasmic region, conserved site
GO :
0007155 : Biological Process : cell adhesion
0008305 : Cellular Component : integrin complex
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 19, pero 5, E.R. 3, mito_pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003172)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AJ344342
Gallus
sp. (Chicken) : AJ719562
Danio
sp. (Zebrafish) : BC054897
Macaca
sp. (Macaque) : ENSMMUT00000030850
Monodelphis
sp. (Opossum) : ENSMODT00000016943
Oryzias
sp. (Medaka) : ENSORLT00000013982
Pongo
sp. (Orangutan) : ENSPPYT00000016300
Tetraodon
sp. (Tetraodon) : GSTENT00030764001
Takifugu
sp. (Fugu) : SINFRUT00000145743
Equus
sp. (Horse) : XM_001489074
Pan
sp. (Chimpanzee) : XM_526172
Canis
sp. (Dog) : XM_534221
Bos
sp. (Cow) : XM_610637
HIX0003172
HIT000199124 (
NM_002207
)
(Integrin alpha-9; Integrin alpha-RLC; Precursor;)
genome : 37,493,813 - 37,861,281 (367,469)
query : 1 - 3,962 (3,962/3,962)
28 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 19, pero 5, E.R. 3, mito_pero 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003172)
HIX0003172
HIT000192589
(
L24158
)
(Integrin alpha-9; Integrin alpha-RLC; Precursor;)
genome : 37,493,971 - 37,860,616 (366,646)
query : 1 - 3,139 (3,139/3,139)
28 exons
identity = 0.999
5'(0.988;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.991;1.000;1.000;1.000;0.994;
1.000)3'
coverage = 1.000
InterPro :
IPR000413 : Integrin alpha chain
IPR013519 : Integrin alpha beta-propellor
IPR013649 : Integrin alpha-2
IPR018184 : Integrin alpha chain, C-terminal cytoplasmic region, conserved site
GO :
0007155 : Biological Process : cell adhesion
0008305 : Cellular Component : integrin complex
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 11, nucl 6.5, E.R. 5, plas 3,
E.R._mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003172)
HIX0182247
pHIT000101096 ( pHIT000101096 )
Representative transcript
(Conserved hypothetical protein.)
genome : 36,657,502 - 36,679,290 (21,789)
query : 1 - 1,278 (1,278/1,278)
9 exons
InterPro :
IPR010630 : Neuroblastoma breakpoint family (NBPF) domain
SOSUI :
SOLUBLE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0182247)
CAGE tag :
T03F022E60FC
Ortholog candidate ( ->
Evola
)
Canis
sp. (Dog) : ENSCAFT00000036883
Pan
sp. (Chimpanzee) : XM_001173786
HIX0204404
eHIT000015702 ( ESTsASS_3_5 )
Representative transcript
(Non-protein coding transcript.)
genome : 36,860,767 - 36,863,974 (3,208)
query : 1 - 564 (564/564)
3 exons
ESTs assembly
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0204404)
ESTs used for assembly :
BG205916,BG210536
AC124153.2
36000001-36136422 F +
NCBI
AC105901.2
36136423-36321344 F +
NCBI
AC126117.2
36321345-36396227 F -
NCBI
AC092051.2
36396228-36575867 F +
NCBI
AC098648.2
36575868-36683131 F -
NCBI
AC105749.2
36683132-36877849 F +
NCBI
AC097360.2
36877850-36901283 F +
NCBI
AC011816.17
36901284-37061146 F +
NCBI
AC006583.31
37061147-37161516 F -
NCBI
AC126118.2
37161517-37225682 F +
NCBI
AC097359.2
37225683-37409585 F +
NCBI
AC136290.2
37409586-37471652 F -
NCBI
AC092055.2
37471653-37595354 F -
NCBI
AP006240.1
37595355-37600000 F +
NCBI