bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0003434
HIT000655202 (
NM_001177599
)
(Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial; EC=6.2.1.4; GTP-specific succinyl-CoA synthetase subunit beta; Succinyl-CoA synthetase beta-G chain; SCS-betaG; Precursor;)
genome : 67,410,884 - 67,705,038 (294,155)
query : 1 - 1,520 (1,520/1,520)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.2.1.4
KEGG pathway :
00020 : Citrate cycle (TCA cycle) (22)
00640 : Propanoate metabolism (45)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
01120 : Microbial metabolism in diverse environments (468)
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 24.5, cyto_mito 13.5, nucl 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003434)
HIX0003434
HIT000429393
(
AK310527
)
Representative transcript
(Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial; EC=6.2.1.4; GTP-specific succinyl-CoA synthetase subunit beta; Succinyl-CoA synthetase beta-G chain; SCS-betaG; Precursor;)
genome : 67,410,884 - 67,705,034 (294,151)
query : 1 - 1,516 (1,516/1,516)
11 exons
identity = 0.999
3'(1.000;1.000;0.990;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.2.1.4
KEGG pathway :
00020 : Citrate cycle (TCA cycle) (22)
00640 : Propanoate metabolism (45)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
01120 : Microbial metabolism in diverse environments (468)
InterPro :
IPR005809 : Succinyl-CoA synthetase, beta subunit
IPR005811 : ATP-citrate lyase/succinyl-CoA ligase
IPR013650 : ATP-grasp fold, succinyl-CoA synthetase-type
IPR013815 : ATP-grasp fold, subdomain 1
IPR013816 : ATP-grasp fold, subdomain 2
IPR016102 : Succinyl-CoA synthetase-like
IPR017866 : Succinyl-CoA synthetase, beta subunit, conserved site
GO :
0003824 : Molecular Function : catalytic activity
0005524 : Molecular Function : ATP binding
0008152 : Biological Process : metabolic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 24.5, cyto_mito 13.5, nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003434)
Ortholog candidate ( ->
Evola
)
Gallus
sp. (Chicken) : AJ719897
Mus
sp. (Mouse) : AK045176
Danio
sp. (Zebrafish) : BC056551
Rattus
sp. (Rat) : BC079367
Bos
sp. (Cow) : BC104559
Tetraodon
sp. (Tetraodon) : CR727186
Oryzias
sp. (Medaka) : ENSORLT00000010035
Pongo
sp. (Orangutan) : ENSPPYT00000015974
Takifugu
sp. (Fugu) : SINFRUT00000132569
Macaca
sp. (Macaque) : XM_001089976
Monodelphis
sp. (Opossum) : XM_001372189
Equus
sp. (Horse) : XM_001495004
Pan
sp. (Chimpanzee) : XM_516570
Canis
sp. (Dog) : XM_533767
HIX0003434
HIT000596566 (
ENST00000493112
)
(Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial; EC=6.2.1.4; GTP-specific succinyl-CoA synthetase subunit beta; Succinyl-CoA synthetase beta-G chain; SCS-betaG; Precursor;)
genome : 67,410,884 - 67,705,034 (294,151)
query : 1 - 1,516 (1,516/1,516)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.2.1.4
KEGG pathway :
00020 : Citrate cycle (TCA cycle) (22)
00640 : Propanoate metabolism (45)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
01120 : Microbial metabolism in diverse environments (468)
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 24.5, cyto_mito 13.5, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003434)
HIX0003434
HIT000024100
(
AL050226
)
(Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial; EC=6.2.1.4; GTP-specific succinyl-CoA synthetase subunit beta; Succinyl-CoA synthetase beta-G chain; SCS-betaG; Precursor;)
genome : 67,425,144 - 67,578,646 (153,503)
query : 18 - 1,612 (1,595/1,636)
5 exons
identity = 0.999
3'(1.000;1.000;1.000)5'
coverage = 0.989
EC number :
EC 6.2.1.4
KEGG pathway :
00020 : Citrate cycle (TCA cycle) (22)
00640 : Propanoate metabolism (45)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
01120 : Microbial metabolism in diverse environments (468)
InterPro :
IPR005809 : Succinyl-CoA synthetase, beta subunit
IPR005811 : ATP-citrate lyase/succinyl-CoA ligase
IPR013650 : ATP-grasp fold, succinyl-CoA synthetase-type
IPR013815 : ATP-grasp fold, subdomain 1
IPR013816 : ATP-grasp fold, subdomain 2
IPR016102 : Succinyl-CoA synthetase-like
GO :
0003824 : Molecular Function : catalytic activity
0005524 : Molecular Function : ATP binding
0008152 : Biological Process : metabolic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 24, mito 5, E.R._mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003434)
HIX0003434
HIT000089981
(
BC019868
)
(Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial; EC=6.2.1.4; GTP-specific succinyl-CoA synthetase subunit beta; Succinyl-CoA synthetase beta-G chain; SCS-betaG; Precursor;)
genome : 67,425,144 - 67,578,639 (153,496)
query : 1 - 1,990 (1,990/2,009)
8 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.2.1.4
KEGG pathway :
00020 : Citrate cycle (TCA cycle) (22)
00640 : Propanoate metabolism (45)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
01120 : Microbial metabolism in diverse environments (468)
InterPro :
IPR005809 : Succinyl-CoA synthetase, beta subunit
IPR005811 : ATP-citrate lyase/succinyl-CoA ligase
IPR013650 : ATP-grasp fold, succinyl-CoA synthetase-type
IPR013816 : ATP-grasp fold, subdomain 2
IPR016102 : Succinyl-CoA synthetase-like
IPR017866 : Succinyl-CoA synthetase, beta subunit, conserved site
GO :
0003824 : Molecular Function : catalytic activity
0005524 : Molecular Function : ATP binding
0008152 : Biological Process : metabolic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 25, mito 4, mito_pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003434)
HIX0003434
HIT000070753
(
AF131748
)
(Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial; EC=6.2.1.4; GTP-specific succinyl-CoA synthetase subunit beta; Succinyl-CoA synthetase beta-G chain; SCS-betaG; Precursor;)
genome : 67,425,144 - 67,559,288 (134,145)
query : 1 - 1,624 (1,624/1,642)
5 exons
identity = 0.998
3'(0.993;1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.2.1.4
KEGG pathway :
00020 : Citrate cycle (TCA cycle) (22)
00640 : Propanoate metabolism (45)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
01120 : Microbial metabolism in diverse environments (468)
InterPro :
IPR005809 : Succinyl-CoA synthetase, beta subunit
IPR005811 : ATP-citrate lyase/succinyl-CoA ligase
IPR013816 : ATP-grasp fold, subdomain 2
IPR016102 : Succinyl-CoA synthetase-like
IPR017866 : Succinyl-CoA synthetase, beta subunit, conserved site
GO :
0003824 : Molecular Function : catalytic activity
0005524 : Molecular Function : ATP binding
0008152 : Biological Process : metabolic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 13.5, cyto_mito 11, mito 7.5, plas 6, nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003434)
HIX0003434
HIT000053069
(
BC047024
)
(Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial; EC=6.2.1.4; GTP-specific succinyl-CoA synthetase subunit beta; Succinyl-CoA synthetase beta-G chain; SCS-betaG; Precursor;)
genome : 67,425,146 - 67,705,008 (279,863)
query : 1 - 2,320 (2,320/2,339)
11 exons
identity = 0.997
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.993;1.000)5'
coverage = 1.000
EC number :
EC 6.2.1.4
KEGG pathway :
00020 : Citrate cycle (TCA cycle) (22)
00640 : Propanoate metabolism (45)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
01120 : Microbial metabolism in diverse environments (468)
InterPro :
IPR005809 : Succinyl-CoA synthetase, beta subunit
IPR005811 : ATP-citrate lyase/succinyl-CoA ligase
IPR013650 : ATP-grasp fold, succinyl-CoA synthetase-type
IPR013815 : ATP-grasp fold, subdomain 1
IPR013816 : ATP-grasp fold, subdomain 2
IPR016102 : Succinyl-CoA synthetase-like
IPR017866 : Succinyl-CoA synthetase, beta subunit, conserved site
GO :
0003824 : Molecular Function : catalytic activity
0005524 : Molecular Function : ATP binding
0008152 : Biological Process : metabolic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 21, pero 6.5, mito_pero 4.5, mito 1.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003434)
HIX0003434
HIT000263157
(
BC068602
)
(Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial; EC=6.2.1.4; GTP-specific succinyl-CoA synthetase subunit beta; Succinyl-CoA synthetase beta-G chain; SCS-betaG; Precursor;)
genome : 67,425,146 - 67,705,038 (279,893)
query : 2 - 2,349 (2,348/2,365)
11 exons
identity = 0.998
3'(1.000;1.000;1.000;0.989;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 0.999
EC number :
EC 6.2.1.4
KEGG pathway :
00020 : Citrate cycle (TCA cycle) (22)
00640 : Propanoate metabolism (45)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
01120 : Microbial metabolism in diverse environments (468)
InterPro :
IPR005809 : Succinyl-CoA synthetase, beta subunit
IPR005811 : ATP-citrate lyase/succinyl-CoA ligase
IPR013650 : ATP-grasp fold, succinyl-CoA synthetase-type
IPR013815 : ATP-grasp fold, subdomain 1
IPR013816 : ATP-grasp fold, subdomain 2
IPR016102 : Succinyl-CoA synthetase-like
IPR017866 : Succinyl-CoA synthetase, beta subunit, conserved site
GO :
0003824 : Molecular Function : catalytic activity
0005524 : Molecular Function : ATP binding
0008152 : Biological Process : metabolic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 25.5, cyto_mito 14, nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003434)
HIX0003434
HIT000093730
(
BC035149
)
(Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial; EC=6.2.1.4; GTP-specific succinyl-CoA synthetase subunit beta; Succinyl-CoA synthetase beta-G chain; SCS-betaG; Precursor;)
genome : 67,425,146 - 67,579,610 (154,465)
query : 17 - 2,111 (2,095/2,127)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.992
EC number :
EC 6.2.1.4
KEGG pathway :
00020 : Citrate cycle (TCA cycle) (22)
00640 : Propanoate metabolism (45)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
01120 : Microbial metabolism in diverse environments (468)
InterPro :
IPR005809 : Succinyl-CoA synthetase, beta subunit
IPR005811 : ATP-citrate lyase/succinyl-CoA ligase
IPR013650 : ATP-grasp fold, succinyl-CoA synthetase-type
IPR013815 : ATP-grasp fold, subdomain 1
IPR013816 : ATP-grasp fold, subdomain 2
IPR016102 : Succinyl-CoA synthetase-like
IPR017866 : Succinyl-CoA synthetase, beta subunit, conserved site
GO :
0003824 : Molecular Function : catalytic activity
0005524 : Molecular Function : ATP binding
0008152 : Biological Process : metabolic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 11, E.R._mito 10.5, E.R. 9, mito 6, plas 2,
extr 2, pero 2, extr_plas 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003434)
HIX0003434
HIT000200642_01 (
NM_003848
)
(Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial; EC=6.2.1.4; GTP-specific succinyl-CoA synthetase subunit beta; Succinyl-CoA synthetase beta-G chain; SCS-betaG; Precursor;)
genome : 67,425,141 - 67,705,038 (279,898)
query : 1 - 2,354 (2,354/2,363)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 25.5, cyto_mito 14, nucl 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003434)
HIX0003434
HIT000117595_01 (
ENST00000307227
)
(Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial; EC=6.2.1.4; GTP-specific succinyl-CoA synthetase subunit beta; Succinyl-CoA synthetase beta-G chain; SCS-betaG; Precursor;)
genome : 67,425,143 - 67,705,038 (279,896)
query : 1 - 2,352 (2,352/2,352)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.2.1.4
KEGG pathway :
00020 : Citrate cycle (TCA cycle) (22)
00640 : Propanoate metabolism (45)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
01120 : Microbial metabolism in diverse environments (468)
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 25.5, cyto_mito 14, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003434)
HIX0003434
HIT000565491_01 (
ENST00000460567
)
(Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial; EC=6.2.1.4; GTP-specific succinyl-CoA synthetase subunit beta; Succinyl-CoA synthetase beta-G chain; SCS-betaG; Precursor;)
genome : 67,425,143 - 67,578,646 (153,504)
query : 1 - 1,596 (1,596/1,596)
5 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.2.1.4
KEGG pathway :
00020 : Citrate cycle (TCA cycle) (22)
00640 : Propanoate metabolism (45)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
01120 : Microbial metabolism in diverse environments (468)
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 26, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003434)
HIX0003434
HIT000086896
(
BC007716
)
(Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial; EC=6.2.1.4; GTP-specific succinyl-CoA synthetase subunit beta; Succinyl-CoA synthetase beta-G chain; SCS-betaG; Precursor;)
genome : 67,425,796 - 67,705,001 (279,206)
query : 1 - 1,662 (1,662/1,679)
11 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.2.1.4
KEGG pathway :
00020 : Citrate cycle (TCA cycle) (22)
00640 : Propanoate metabolism (45)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
01120 : Microbial metabolism in diverse environments (468)
InterPro :
IPR005809 : Succinyl-CoA synthetase, beta subunit
IPR005811 : ATP-citrate lyase/succinyl-CoA ligase
IPR013650 : ATP-grasp fold, succinyl-CoA synthetase-type
IPR013815 : ATP-grasp fold, subdomain 1
IPR013816 : ATP-grasp fold, subdomain 2
IPR016102 : Succinyl-CoA synthetase-like
IPR017866 : Succinyl-CoA synthetase, beta subunit, conserved site
GO :
0003824 : Molecular Function : catalytic activity
0005524 : Molecular Function : ATP binding
0008152 : Biological Process : metabolic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 21, pero 6.5, mito_pero 4.5, mito 1.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003434)
HIX0003434
HIT000064815
(
AF058954
)
(Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial; EC=6.2.1.4; GTP-specific succinyl-CoA synthetase subunit beta; Succinyl-CoA synthetase beta-G chain; SCS-betaG; Precursor;)
genome : 67,426,118 - 67,660,020 (233,903)
query : 1 - 1,265 (1,265/1,265)
10 exons
identity = 0.996
3'(1.000;1.000;1.000;1.000;0.974;1.000;1.000;
1.000)5'
coverage = 1.000
EC number :
EC 6.2.1.4
KEGG pathway :
00020 : Citrate cycle (TCA cycle) (22)
00640 : Propanoate metabolism (45)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
01120 : Microbial metabolism in diverse environments (468)
InterPro :
IPR005809 : Succinyl-CoA synthetase, beta subunit
IPR005811 : ATP-citrate lyase/succinyl-CoA ligase
IPR013650 : ATP-grasp fold, succinyl-CoA synthetase-type
IPR013815 : ATP-grasp fold, subdomain 1
IPR013816 : ATP-grasp fold, subdomain 2
IPR016102 : Succinyl-CoA synthetase-like
IPR017866 : Succinyl-CoA synthetase, beta subunit, conserved site
GO :
0003824 : Molecular Function : catalytic activity
0005524 : Molecular Function : ATP binding
0008152 : Biological Process : metabolic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 11.5, mito 10.5, cyto_nucl 8.5, mito_pero 6.5,
nucl 4.5, E.R. 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003434)
HIX0003434
HIT000489222
(
AK294598
)
(Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial; EC=6.2.1.4; GTP-specific succinyl-CoA synthetase subunit beta; Succinyl-CoA synthetase beta-G chain; SCS-betaG; Precursor;)
genome : 67,459,030 - 67,705,031 (246,002)
query : 1 - 1,512 (1,512/1,512)
10 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.993;1.000)5'
coverage = 1.000
EC number :
EC 6.2.1.4
KEGG pathway :
00020 : Citrate cycle (TCA cycle) (22)
00640 : Propanoate metabolism (45)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
01120 : Microbial metabolism in diverse environments (468)
InterPro :
IPR005809 : Succinyl-CoA synthetase, beta subunit
IPR013650 : ATP-grasp fold, succinyl-CoA synthetase-type
IPR013815 : ATP-grasp fold, subdomain 1
IPR013816 : ATP-grasp fold, subdomain 2
IPR016102 : Succinyl-CoA synthetase-like
IPR017866 : Succinyl-CoA synthetase, beta subunit, conserved site
GO :
0003824 : Molecular Function : catalytic activity
0005524 : Molecular Function : ATP binding
0008152 : Biological Process : metabolic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 28.5, cyto_mito 17.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003434)
HIX0003434
HIT000596261 (
ENST00000492795
)
(Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial; EC=6.2.1.4; GTP-specific succinyl-CoA synthetase subunit beta; Succinyl-CoA synthetase beta-G chain; SCS-betaG; Precursor;)
genome : 67,459,030 - 67,705,031 (246,002)
query : 1 - 1,512 (1,512/1,512)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.2.1.4
KEGG pathway :
00020 : Citrate cycle (TCA cycle) (22)
00640 : Propanoate metabolism (45)
01100 : Metabolic pathways (1346)
01110 : Biosynthesis of secondary metabolites (562)
01120 : Microbial metabolism in diverse environments (468)
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 28.5, cyto_mito 17.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003434)
HIX0204532
HIT000567237 (
ENST00000462398
)
(NADH:ubiquinone oxidoreductase, subunit NDUFB4 family protein.)
genome : 67,564,364 - 67,564,744 (381)
query : 1 - 381 (381/381)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14, cyto 13.5, cyto_plas 9.66667, extr 9,
nucl 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0204532)
HIX0003435
HIT000015005
(
AK074225
)
Representative transcript
(Conserved hypothetical protein.)
genome : 67,612,720 - 67,650,344 (37,625)
query : 1 - 2,174 (2,174/2,192)
2 exons
identity = 0.987
3'(0.779;0.999)5'
coverage = 0.999
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003435)
HIX0018343
HIT000095132
(
BC038210
)
(Hypothetical short protein.)
genome : 67,705,121 - 67,797,533 (92,413)
query : 1 - 962 (962/977)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, nucl 3.5, cyto_nucl 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018343)
HIX0018343
HIT000569169 (
ENST00000464420
)
(Hypothetical short protein.)
genome : 67,705,121 - 67,797,534 (92,414)
query : 1 - 963 (963/963)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, nucl 3.5, cyto_nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018343)
HIX0018343
HIT000027096
(
AL832184
)
Representative transcript
(Conserved hypothetical protein.)
genome : 67,705,182 - 67,998,135 (292,954)
query : 2 - 2,225 (2,224/2,242)
7 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;0.990;0.995)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, cyto 6, mito 6, cyto_nucl 5.5,
cyto_pero 5.33333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018343)
HIX0018343
HIT000586598 (
ENST00000482677
)
(Conserved hypothetical protein.)
genome : 67,705,182 - 67,998,137 (292,956)
query : 1 - 2,226 (2,226/2,226)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, mito 6, cyto_nucl 5.66667, cyto 5.5,
nucl 4.5, cyto_pero 4.33333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018343)
HIX0003436
HIT000013810
(
AK057196
)
Representative transcript
(Conserved hypothetical protein.)
genome : 67,708,364 - 67,710,542 (2,179)
query : 1 - 2,179 (2,179/2,179)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 22, plas 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003436)
HIX0018343
HIT000599951 (
ENST00000496640
)
(Conserved hypothetical protein.)
genome : 67,718,671 - 67,801,093 (82,423)
query : 1 - 862 (862/862)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16.5, nucl 13, cyto 12, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018343)
HIX0215708
HIT000693690 (
ENST00000581789
)
(Non-protein coding transcript.)
genome : 67,878,596 - 67,878,697 (102)
query : 1 - 102 (102/102)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215708)
HIX0017784
HIT000723290 (
NM_001252216
)
(Protein FAM19A1; Chemokine-like protein TAFA-1; Precursor;)
genome : 68,040,734 - 68,594,770 (554,037)
query : 1 - 1,734 (1,734/1,758)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 20, mito 7, plas 1, nucl 1, cyto 1, E.R. 1,
cyto_nucl 1, lyso 1, cyto_plas 1
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017784)
HIX0017784
HIT000251768
(
AY325114
)
Representative transcript
(Protein FAM19A1; Chemokine-like protein TAFA-1; Precursor;)
genome : 68,040,734 - 68,593,851 (553,118)
query : 1 - 815 (815/815)
5 exons
identity = 0.998
5'(0.991;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR020350 : Chemokine-like protein, FAM19A2
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 20, mito 7, plas 1, nucl 1, cyto 1, E.R. 1,
cyto_nucl 1, lyso 1, cyto_plas 1
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017784)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB172528
Mus
sp. (Mouse) : AK050001
Bos
sp. (Cow) : BC142202
Gallus
sp. (Chicken) : CR353412
Oryzias
sp. (Medaka) : ENSORLT00000017035
Pongo
sp. (Orangutan) : ENSPPYT00000015972
Pan
sp. (Chimpanzee) : ENSPTRT00000028235
Rattus
sp. (Rat) : ENSRNOT00000056975
Tetraodon
sp. (Tetraodon) : GSTENT00023612001
Takifugu
sp. (Fugu) : SINFRUT00000150421
Takifugu
sp. (Fugu) : SINFRUT00000152886
Monodelphis
sp. (Opossum) : XM_001372263
Equus
sp. (Horse) : XM_001498804
Canis
sp. (Dog) : XM_848605
HIX0017784
HIT000320571 (
NM_213609
)
(Protein FAM19A1; Chemokine-like protein TAFA-1; Precursor;)
genome : 68,053,359 - 68,594,770 (541,412)
query : 1 - 2,008 (2,008/2,032)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 20, mito 7, plas 1, nucl 1, cyto 1, E.R. 1,
cyto_nucl 1, lyso 1, cyto_plas 1
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017784)
HIX0017784
HIT000582252 (
ENST00000478136
)
(Protein FAM19A1; Chemokine-like protein TAFA-1; Precursor;)
genome : 68,053,359 - 68,594,776 (541,418)
query : 1 - 2,014 (2,014/2,014)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 20, mito 7, plas 1, nucl 1, cyto 1, E.R. 1,
cyto_nucl 1, lyso 1, cyto_plas 1
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017784)
HIX0017784
HIT000422465
(
AK289668
)
(Protein FAM19A1; Chemokine-like protein TAFA-1; Precursor;)
genome : 68,053,367 - 68,594,009 (540,643)
query : 1 - 1,236 (1,236/1,236)
5 exons
identity = 0.997
5'(0.994;1.000;1.000;1.000;0.997)3'
coverage = 1.000
InterPro :
IPR020350 : Chemokine-like protein, FAM19A2
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 20, mito 7, plas 1, nucl 1, cyto 1, E.R. 1,
cyto_nucl 1, lyso 1, cyto_plas 1
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017784)
HIX0017784
HIT000423243
(
AK290446
)
(Protein FAM19A1; Chemokine-like protein TAFA-1; Precursor;)
genome : 68,053,434 - 68,594,028 (540,595)
query : 1 - 1,188 (1,188/1,188)
5 exons
identity = 0.997
5'(0.993;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR020350 : Chemokine-like protein, FAM19A2
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 20, mito 7, plas 1, nucl 1, cyto 1, E.R. 1,
cyto_nucl 1, lyso 1, cyto_plas 1
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017784)
HIX0017784
HIT000091115
(
BC025746
)
(Protein FAM19A1; Chemokine-like protein TAFA-1; Precursor;)
genome : 68,053,454 - 68,594,770 (541,317)
query : 1 - 1,910 (1,910/1,934)
5 exons
identity = 0.998
5'(0.992;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR020350 : Chemokine-like protein, FAM19A2
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 20, mito 7, plas 1, nucl 1, cyto 1, E.R. 1,
cyto_nucl 1, lyso 1, cyto_plas 1
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017784)
HIX0017784
HIT000016996_03
(
AK092129
)
(Hypothetical protein.)
genome : 68,055,133 - 68,057,522 (2,390)
query : 1 - 2,390 (2,390/2,390)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, cyto_nucl 4, nucl 3.5, cyto 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017784)
HIX0017784
HIT000026627
(
AL713702
)
(Protein FAM19A1; Chemokine-like protein TAFA-1; Precursor;)
genome : 68,055,373 - 68,594,770 (539,398)
query : 4 - 1,917 (1,914/1,936)
4 exons
identity = 0.997
5'(0.998;0.993;0.992;0.997)3'
coverage = 0.998
InterPro :
IPR020350 : Chemokine-like protein, FAM19A2
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 20, mito 7, plas 1, nucl 1, cyto 1, E.R. 1,
cyto_nucl 1, lyso 1, cyto_plas 1
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017784)
HIX0017784
HIT000599996 (
ENST00000496687
)
(Protein FAM19A1; Chemokine-like protein TAFA-1; Precursor;)
genome : 68,055,373 - 68,594,772 (539,400)
query : 1 - 1,917 (1,917/1,917)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 20, mito 7, plas 1, nucl 1, cyto 1, E.R. 1,
cyto_nucl 1, lyso 1, cyto_plas 1
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017784)
HIX0215541
HIT000635495_03 (
ENST00000536450
)
(Non-protein coding transcript.)
genome : 68,169,312 - 68,169,415 (104)
query : 5 - 108 (104/108)
1 exon
identity = 0.962
3'(0.962)5'
coverage = 0.963
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215541)
HIX0215541
HIT000665360_02 (
ENST00000551795
)
(Non-protein coding transcript.)
genome : 68,169,312 - 68,169,415 (104)
query : 5 - 108 (104/108)
1 exon
identity = 0.962
3'(0.962)5'
coverage = 0.963
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215541)
HIX0204661
HIT000577568_02 (
ENST00000473228
)
(Hypothetical protein.)
genome : 68,194,154 - 68,194,780 (627)
query : 1 - 627 (627/627)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 27, cyto_nucl 3, nucl 2.5, cyto 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0204661)
HIX0031156
HIT000098129
(
BC045692
)
Representative transcript
(Conserved hypothetical protein.)
genome : 68,214,545 - 68,217,295 (2,751)
query : 1 - 2,747 (2,747/2,762)
1 exon
identity = 0.997
5'(0.997)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, cyto 7, nucl 3, mito 3, mito_nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0031156)
HIX0204639
HIT000575530 (
ENST00000471084
)
(Conserved hypothetical protein.)
genome : 68,241,548 - 68,241,730 (183)
query : 1 - 183 (183/183)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, nucl 8, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0204639)
HIX0017784
HIT000594555 (
ENST00000491017
)
(Protein FAM19A1; Chemokine-like protein TAFA-1; Precursor;)
genome : 68,295,961 - 68,466,571 (170,611)
query : 1 - 648 (648/648)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017784)
HIX0003438
HIT000020528
(
AK095673
)
Representative transcript
(Conserved hypothetical protein.)
genome : 68,457,122 - 68,459,855 (2,734)
query : 1 - 2,734 (2,734/2,734)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, cyto_nucl 8.5, cyto 7, nucl 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003438)
HIX0024485
HIT000050285
(
AK131014
)
Representative transcript
(Conserved hypothetical protein.)
genome : 68,549,798 - 68,555,017 (5,220)
query : 1 - 608 (608/608)
2 exons
identity = 0.997
5'(0.993;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 27, cyto_nucl 2.5, cyto 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024485)
HIX0204520
HIT000566509 (
ENST00000461635
)
(Conserved hypothetical protein.)
genome : 68,682,857 - 68,683,507 (651)
query : 1 - 651 (651/651)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, mito 5, cyto_nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0204520)
HIX0119984
HIT000474336 (
ENST00000390806
)
(Non-protein coding transcript.)
genome : 68,684,067 - 68,684,160 (94)
query : 1 - 94 (94/94)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0119984)
HIX0030744
HIT000267894
(
CR457044
)
Representative transcript
(26S protease regulatory subunit 4; P26s4; 26S proteasome AAA-ATPase subunit RPT2; Proteasome 26S subunit ATPase 1;)
genome : 68,684,856 - 68,686,178 (1,323)
query : 1 - 1,323 (1,323/1,323)
1 exon
identity = 0.998
5'(0.998)3'
coverage = 1.000
InterPro :
IPR003593 : AAA+ ATPase domain
IPR003959 : ATPase, AAA-type, core
IPR003960 : ATPase, AAA-type, conserved site
IPR005937 : 26S proteasome subunit P45
GO :
0000166 : Molecular Function : nucleotide binding
0005524 : Molecular Function : ATP binding
0005737 : Cellular Component : cytoplasm
0016787 : Molecular Function : hydrolase activity
0017111 : Molecular Function : nucleoside-triphosphatase activity
0030163 : Biological Process : protein catabolic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14.5, cyto 13.5, mito 9, nucl 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030744)
Ortholog candidate ( ->
Evola
)
Danio
sp. (Zebrafish) : BC049471
Tetraodon
sp. (Tetraodon) : CR646015
Oryzias
sp. (Medaka) : ENSORLT00000019327
Pongo
sp. (Orangutan) : ENSPPYT00000003534
Takifugu
sp. (Fugu) : SINFRUT00000171244
Macaca
sp. (Macaque) : XM_001103312
Canis
sp. (Dog) : XM_843431
Rattus
sp. (Rat) : XR_006736
Mus
sp. (Mouse) : XR_033613
HIX0030744
HIT000582228_01 (
ENST00000478110
)
(26S protease regulatory subunit 4; P26s4; 26S proteasome AAA-ATPase subunit RPT2; Proteasome 26S subunit ATPase 1;)
genome : 68,684,856 - 68,686,175 (1,320)
query : 1 - 1,320 (1,320/1,320)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, cyto_nucl 12, mito 11, nucl 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030744)
HIX0030744
HIT000342115_03
(
DQ185033
)
(Non-protein coding transcript.)
genome : 68,685,497 - 68,685,634 (138)
query : 1 - 143 (143/143)
1 exon
identity = 0.958
5'(0.958)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030744)
HIX0030744
HIT000612470_01 (
ENST00000512850
)
(26S protease regulatory subunit 4; P26s4; 26S proteasome AAA-ATPase subunit RPT2; Proteasome 26S subunit ATPase 1;)
genome : 68,685,936 - 68,686,110 (175)
query : 1 - 175 (175/177)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 0.989
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 13, cyto 11.5, cyto_nucl 11, nucl 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0030744)
HIX0215582
HIT000079098_03
(
AF401213
)
Representative transcript
(Non-protein coding transcript.)
genome : 68,686,318 - 68,686,393 (76)
query : 1 - 76 (76/76)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215582)
HIX0003439
HIT000041314
(
BC031566
)
(Protein FAM19A4; Chemokine-like protein TAFA-4; Precursor;)
genome : 68,780,917 - 68,981,675 (200,759)
query : 1 - 2,114 (2,114/2,188)
6 exons
identity = 0.992
3'(0.991;0.969;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR020350 : Chemokine-like protein, FAM19A2
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003439)
HIX0003439
HIT000251771
(
AY325117
)
Representative transcript
(Protein FAM19A4; Chemokine-like protein TAFA-4; Precursor;)
genome : 68,780,917 - 68,981,711 (200,795)
query : 23 - 2,258 (2,236/2,274)
6 exons
identity = 0.990
3'(0.987;0.969;1.000;1.000;1.000;1.000)5'
coverage = 0.990
InterPro :
IPR020350 : Chemokine-like protein, FAM19A2
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003439)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB045997
Mus
sp. (Mouse) : AK149355
Bos
sp. (Cow) : BC120098
Danio
sp. (Zebrafish) : BC124818
Equus
sp. (Horse) : ENSECAT00000022196
Gallus
sp. (Chicken) : ENSGALT00000035120
Oryzias
sp. (Medaka) : ENSORLT00000010112
Oryzias
sp. (Medaka) : ENSORLT00000017023
Pongo
sp. (Orangutan) : ENSPPYT00000015970
Pan
sp. (Chimpanzee) : ENSPTRT00000028238
Tetraodon
sp. (Tetraodon) : GSTENT00023613001
Takifugu
sp. (Fugu) : SINFRUT00000183240
Rattus
sp. (Rat) : XM_001069304
Monodelphis
sp. (Opossum) : XM_001372285
Canis
sp. (Dog) : XM_848600
HIX0003439
HIT000316219 (
NM_001005527
)
(Protein FAM19A4; Chemokine-like protein TAFA-4; Precursor;)
genome : 68,780,915 - 68,981,761 (200,847)
query : 1 - 2,212 (2,212/2,212)
6 exons
identity = 0.998
3'(1.000;0.969;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003439)
HIX0003439
HIT000318614 (
NM_182522
)
(Protein FAM19A4; Chemokine-like protein TAFA-4; Precursor;)
genome : 68,780,915 - 68,981,761 (200,847)
query : 1 - 2,294 (2,294/2,294)
6 exons
identity = 0.998
3'(1.000;0.969;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003439)
HIX0003439
HIT000114204 (
ENST00000295569
)
(Protein FAM19A4; Chemokine-like protein TAFA-4; Precursor;)
genome : 68,780,917 - 68,981,761 (200,845)
query : 1 - 2,292 (2,292/2,292)
6 exons
identity = 0.998
3'(1.000;0.969;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003439)
HIX0003439
HIT000014497
(
AK057890
)
(Protein FAM19A4; Chemokine-like protein TAFA-4; Precursor;)
genome : 68,780,918 - 68,934,448 (153,531)
query : 1 - 1,897 (1,897/1,897)
5 exons
identity = 0.991
3'(0.991;0.969;1.000;1.000;0.992)5'
coverage = 1.000
InterPro :
IPR020350 : Chemokine-like protein, FAM19A2
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003439)
HIX0003439
HIT000599095 (
ENST00000495737
)
(Protein FAM19A4; Chemokine-like protein TAFA-4; Precursor;)
genome : 68,802,067 - 68,981,719 (179,653)
query : 1 - 602 (602/602)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003439)
HIX0003440
HIT000040649
(
BC028935
)
(Conserved hypothetical protein.)
genome : 69,024,377 - 69,026,308 (1,932)
query : 2 - 1,942 (1,941/1,993)
1 exon
identity = 0.994
3'(0.994)5'
coverage = 0.999
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 11, E.R._mito 5.5, mito 5, plas 4, cyto 4,
E.R. 4, cyto_plas 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003440)
HIX0003440
HIT000057465
(
BX648818
)
(EGF domain-specific O-linked N-acetylglucosamine transferase; EC=2.4.1.255; Extracellular O-linked N-acetylglucosamine transferase; Precursor;)
genome : 69,024,365 - 69,062,819 (38,455)
query : 2 - 4,440 (4,439/4,469)
18 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.989;1.000;1.000;1.000;0.989;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.4.1.255
InterPro :
IPR007657 : Glycosyltransferase AER61, uncharacterised
GO :
0016757 : Molecular Function : transferase activity, transferring glycosyl groups
SOSUI :
SOLUBLE PROTEIN
PSORT :
E.R. 15, extr 11, plas 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003440)
HIX0003440
HIT000028379
(
AL833467
)
(EGF domain-specific O-linked N-acetylglucosamine transferase; EC=2.4.1.255; Extracellular O-linked N-acetylglucosamine transferase; Precursor;)
genome : 69,024,371 - 69,032,005 (7,635)
query : 1 - 2,812 (2,812/2,845)
4 exons
identity = 0.998
3'(0.998;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.4.1.255
InterPro :
IPR007657 : Glycosyltransferase AER61, uncharacterised
GO :
0016757 : Molecular Function : transferase activity, transferring glycosyl groups
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, nucl 13
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003440)
HIX0003440
HIT000260189
(
BC060887
)
(EGF domain-specific O-linked N-acetylglucosamine transferase; EC=2.4.1.255; Extracellular O-linked N-acetylglucosamine transferase; Precursor;)
genome : 69,024,369 - 69,062,774 (38,406)
query : 1 - 4,137 (4,137/4,152)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.989;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
EC number :
EC 2.4.1.255
InterPro :
IPR007657 : Glycosyltransferase AER61, uncharacterised
GO :
0016757 : Molecular Function : transferase activity, transferring glycosyl groups
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, E.R. 13, plas 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003440)
HIX0003440
HIT000317908 (
NM_173654
)
(EGF domain-specific O-linked N-acetylglucosamine transferase; EC=2.4.1.255; Extracellular O-linked N-acetylglucosamine transferase; Precursor;)
genome : 69,024,369 - 69,062,774 (38,406)
query : 1 - 4,137 (4,137/4,152)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.989;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
EC number :
EC 2.4.1.255
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, E.R. 13, plas 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003440)
HIX0003440
HIT000055369
(
BX640821
)
(EGF domain-specific O-linked N-acetylglucosamine transferase; EC=2.4.1.255; Extracellular O-linked N-acetylglucosamine transferase; Precursor;)
genome : 69,024,382 - 69,057,681 (33,300)
query : 6 - 3,768 (3,763/3,787)
14 exons
identity = 0.999
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.990;1.000;1.000;0.989;1.000;1.000)5'
coverage = 0.999
EC number :
EC 2.4.1.255
InterPro :
IPR007657 : Glycosyltransferase AER61, uncharacterised
GO :
0016757 : Molecular Function : transferase activity, transferring glycosyl groups
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 15.5, nucl 13.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003440)
HIX0003440
HIT000364979 (
ENST00000383701
)
(EGF domain-specific O-linked N-acetylglucosamine transferase; EC=2.4.1.255; Extracellular O-linked N-acetylglucosamine transferase; Precursor;)
genome : 69,024,365 - 69,063,112 (38,748)
query : 1 - 4,731 (4,731/4,731)
18 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.4.1.255
SOSUI :
SOLUBLE PROTEIN
PSORT :
E.R. 15, extr 11, plas 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003440)
HIX0003440
HIT000114205 (
ENST00000295571
)
(EGF domain-specific O-linked N-acetylglucosamine transferase; EC=2.4.1.255; Extracellular O-linked N-acetylglucosamine transferase; Precursor;)
genome : 69,024,368 - 69,062,774 (38,407)
query : 1 - 4,138 (4,138/4,138)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
EC number :
EC 2.4.1.255
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, E.R. 13, plas 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003440)
HIX0003440
HIT000046060
(
AK126187
)
(EGF domain-specific O-linked N-acetylglucosamine transferase; EC=2.4.1.255; Extracellular O-linked N-acetylglucosamine transferase; Precursor;)
genome : 69,024,378 - 69,061,594 (37,217)
query : 2 - 3,724 (3,723/3,724)
13 exons
identity = 0.994
3'(0.999;0.841;1.000;1.000;1.000;1.000;0.990;
0.989;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.4.1.255
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, plas 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003440)
HIX0003440
HIT000006414
(
AK023140
)
(Conserved hypothetical protein.)
genome : 69,024,378 - 69,026,623 (2,246)
query : 1 - 2,246 (2,246/2,246)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 12, E.R._mito 5.5, plas 5, E.R. 5, mito 4,
nucl 2, cyto 2, cyto_nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003440)
HIX0003440
HIT000015956
(
AK091089
)
(EGF domain-specific O-linked N-acetylglucosamine transferase; EC=2.4.1.255; Extracellular O-linked N-acetylglucosamine transferase; Precursor;)
genome : 69,024,383 - 69,050,792 (26,410)
query : 1 - 3,624 (3,624/3,624)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.990;1.000)5'
coverage = 1.000
EC number :
EC 2.4.1.255
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21, cyto_nucl 13.5, extr 4, nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003440)
HIX0003440
HIT000599957 (
ENST00000496647
)
(EGF domain-specific O-linked N-acetylglucosamine transferase precursor.)
genome : 69,024,383 - 69,050,792 (26,410)
query : 1 - 3,624 (3,624/3,624)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.4.1.255
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, extr 9, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003440)
HIX0003440
HIT000043086
(
AK123213
)
(EGF domain-specific O-linked N-acetylglucosamine transferase precursor.)
genome : 69,024,707 - 69,037,516 (12,810)
query : 1 - 2,650 (2,650/2,650)
6 exons
identity = 0.993
3'(0.992;1.000;1.000;1.000;1.000;0.986)5'
coverage = 1.000
EC number :
EC 2.4.1.255
InterPro :
IPR007657 : Glycosyltransferase AER61, uncharacterised
GO :
0016757 : Molecular Function : transferase activity, transferring glycosyl groups
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18, cyto 8, cyto_nucl 7.5, nucl 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003440)
HIX0003440
HIT000488725
(
AK294101
)
(EGF domain-specific O-linked N-acetylglucosamine transferase precursor.)
genome : 69,026,162 - 69,050,801 (24,640)
query : 1 - 1,507 (1,507/1,507)
10 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.989;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.4.1.255
InterPro :
IPR007657 : Glycosyltransferase AER61, uncharacterised
GO :
0016757 : Molecular Function : transferase activity, transferring glycosyl groups
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 14.5, nucl 9.5, cysk 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003440)
HIX0003440
HIT000498726
(
AK304102
)
(EGF domain-specific O-linked N-acetylglucosamine transferase; EC=2.4.1.255; Extracellular O-linked N-acetylglucosamine transferase; Precursor;)
genome : 69,026,331 - 69,062,801 (36,471)
query : 1 - 2,243 (2,243/2,243)
16 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.4.1.255
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, plas 6, mito 2, lyso 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003440)
HIX0003440
HIT000504384 (
ENST00000403140
)
(EGF domain-specific O-linked N-acetylglucosamine transferase; EC=2.4.1.255; Extracellular O-linked N-acetylglucosamine transferase; Precursor;)
genome : 69,026,331 - 69,062,801 (36,471)
query : 1 - 2,243 (2,243/2,243)
16 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.4.1.255
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, plas 6, mito 2, lyso 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003440)
HIX0003440
HIT000640000 (
ENST00000540955
)
(EGF domain-specific O-linked N-acetylglucosamine transferase; EC=2.4.1.255; Extracellular O-linked N-acetylglucosamine transferase; Precursor;)
genome : 69,026,331 - 69,062,801 (36,471)
query : 1 - 2,243 (2,243/2,243)
16 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.4.1.255
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, plas 6, mito 2, lyso 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003440)
HIX0003440
HIT000423153
(
AK290356
)
(EGF domain-specific O-linked N-acetylglucosamine transferase; EC=2.4.1.255; Extracellular O-linked N-acetylglucosamine transferase; Precursor;)
genome : 69,026,419 - 69,057,681 (31,263)
query : 12 - 1,738 (1,727/1,738)
14 exons
identity = 0.999
3'(0.998;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.989;1.000;1.000)5'
coverage = 0.994
EC number :
EC 2.4.1.255
InterPro :
IPR007657 : Glycosyltransferase AER61, uncharacterised
GO :
0016757 : Molecular Function : transferase activity, transferring glycosyl groups
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16.8333, nucl 16.5, cyto 14, cyto_plas 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003440)
HIX0003440
HIT000639809 (
ENST00000540764
)
(EGF domain-specific O-linked N-acetylglucosamine transferase; EC=2.4.1.255; Extracellular O-linked N-acetylglucosamine transferase; Precursor;)
genome : 69,026,419 - 69,057,681 (31,263)
query : 1 - 1,726 (1,726/1,726)
14 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.4.1.255
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_nucl 12.8333, cyto_plas 10.3333,
nucl 5.5, E.R. 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003440)
HIX0003440
pHIT000006969 ( pHIT000006969 )
(EGF domain-specific O-linked N-acetylglucosamine transferase precursor.)
genome : 69,026,769 - 69,063,150 (36,382)
query : 1 - 1,239 (1,239/1,239)
12 exons
EC number :
EC 2.4.1.255
SOSUI :
MEMBRANE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003440)
CAGE tag :
H05BD65A1807
HIX0003440
pHIT000101480 ( pHIT000101480 )
(EGF domain-specific O-linked N-acetylglucosamine transferase; EC=2.4.1.255; Extracellular O-linked N-acetylglucosamine transferase; Precursor;)
genome : 69,026,769 - 69,063,150 (36,382)
query : 1 - 1,359 (1,359/1,359)
13 exons
EC number :
EC 2.4.1.255
InterPro :
IPR007657 : Glycosyltransferase AER61, uncharacterised
GO :
0016757 : Molecular Function : transferase activity, transferring glycosyl groups
SOSUI :
MEMBRANE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003440)
CAGE tag :
T03R041FAADF
HIX0003440
HIT000249461
(
AJ868234
)
Representative transcript
(EGF domain-specific O-linked N-acetylglucosamine transferase; EC=2.4.1.255; Extracellular O-linked N-acetylglucosamine transferase; Precursor;)
genome : 69,026,769 - 69,058,997 (32,229)
query : 1 - 1,584 (1,584/1,584)
15 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.989;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
EC number :
EC 2.4.1.255
InterPro :
IPR007657 : Glycosyltransferase AER61, uncharacterised
GO :
0016757 : Molecular Function : transferase activity, transferring glycosyl groups
SOSUI :
SOLUBLE PROTEIN
PSORT :
E.R. 15, extr 11, plas 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003440)
Ortholog candidate ( ->
Evola
)
Canis
sp. (Dog) : AJ868227
Gallus
sp. (Chicken) : AJ868233
Pan
sp. (Chimpanzee) : AJ868235
Rattus
sp. (Rat) : AJ868236
Tetraodon
sp. (Tetraodon) : AJ868237
Takifugu
sp. (Fugu) : AJ868238
Mus
sp. (Mouse) : AK037507
Bos
sp. (Cow) : BC126625
Equus
sp. (Horse) : ENSECAT00000013261
Oryzias
sp. (Medaka) : ENSORLT00000010011
Pongo
sp. (Orangutan) : ENSPPYT00000015969
Macaca
sp. (Macaque) : XM_001088832
Danio
sp. (Zebrafish) : XM_001921688
HIX0003440
HIT000722522
(
KC347596
)
(EGF domain-specific O-linked N-acetylglucosamine transferase; EC=2.4.1.255; Extracellular O-linked N-acetylglucosamine transferase; Precursor;)
genome : 69,026,769 - 69,058,997 (32,229)
query : 1 - 1,584 (1,584/1,584)
15 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.989;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
EC number :
EC 2.4.1.255
InterPro :
IPR007657 : Glycosyltransferase AER61, uncharacterised
GO :
0016757 : Molecular Function : transferase activity, transferring glycosyl groups
SOSUI :
SOLUBLE PROTEIN
PSORT :
E.R. 15, extr 11, plas 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003440)
HIX0003440
HIT000584840 (
ENST00000480846
)
(EGF domain-specific O-linked N-acetylglucosamine transferase; EC=2.4.1.255; Extracellular O-linked N-acetylglucosamine transferase; Precursor;)
genome : 69,031,888 - 69,037,010 (5,123)
query : 1 - 551 (551/551)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.4.1.255
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 14.1667, cyto_plas 10.5,
nucl 7.5, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003440)
HIX0003440
HIT000522308 (
ENST00000424374
)
(EGF domain-specific O-linked N-acetylglucosamine transferase; EC=2.4.1.255; Extracellular O-linked N-acetylglucosamine transferase; Precursor;)
genome : 69,056,888 - 69,062,750 (5,863)
query : 1 - 924 (924/924)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.4.1.255
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, plas 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003440)
HIX0003440
HIT000554310 (
ENST00000456376
)
(EGF domain-specific O-linked N-acetylglucosamine transferase; EC=2.4.1.255; Extracellular O-linked N-acetylglucosamine transferase; Precursor;)
genome : 69,056,913 - 69,062,822 (5,910)
query : 1 - 736 (736/736)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 2.4.1.255
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 25, plas 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003440)
HIX0204761
HIT000586305 (
ENST00000482368
)
(Conserved hypothetical protein.)
genome : 69,063,092 - 69,098,039 (34,948)
query : 1 - 962 (962/962)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15.5, extr_plas 9.5, mito 6.5, E.R._mito 4.5,
pero 3, plas 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0204761)
HIX0204761
HIT000709725 (
ENST00000597950
)
(Conserved hypothetical protein.)
genome : 69,063,135 - 69,097,715 (34,581)
query : 1 - 725 (725/725)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15.5, extr_plas 9.5, mito 6.5, E.R._mito 4.5,
pero 3, plas 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0204761)
HIX0204761
HIT000710547 (
ENST00000598783
)
(Conserved hypothetical protein.)
genome : 69,063,135 - 69,097,715 (34,581)
query : 1 - 694 (694/694)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15.5, extr_plas 9.5, mito 6.5, E.R._mito 4.5,
pero 3, plas 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0204761)
HIX0204761
HIT000708311 (
ENST00000596523
)
(Conserved hypothetical protein.)
genome : 69,063,141 - 69,097,715 (34,575)
query : 1 - 448 (448/448)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15.5, extr_plas 9.5, mito 6.5, E.R._mito 4.5,
pero 3, plas 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0204761)
HIX0204761
HIT000708519 (
ENST00000596732
)
(Conserved hypothetical protein.)
genome : 69,063,152 - 69,097,715 (34,564)
query : 1 - 613 (613/613)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15.5, extr_plas 9.5, mito 6.5, E.R._mito 4.5,
pero 3, plas 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0204761)
HIX0204761
HIT000707716 (
ENST00000595925
)
(Conserved hypothetical protein.)
genome : 69,063,315 - 69,105,773 (42,459)
query : 1 - 745 (745/745)
3 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_mito 10.5, extr 7, mito 5.5, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0204761)
HIX0204761
HIT000711222 (
ENST00000599467
)
(Conserved hypothetical protein.)
genome : 69,063,315 - 69,084,610 (21,296)
query : 1 - 523 (523/523)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0204761)
HIX0204761
HIT000713249 (
ENST00000601511
)
(Non-protein coding transcript.)
genome : 69,063,315 - 69,084,303 (20,989)
query : 1 - 453 (453/453)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0204761)
HIX0204761
HIT000709145 (
ENST00000597366
)
(Conserved hypothetical protein.)
genome : 69,063,315 - 69,079,830 (16,516)
query : 1 - 853 (853/853)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 11.5, extr 7, mito 5, nucl 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0204761)
HIX0204761
HIT000708447 (
ENST00000596659
)
(Hypothetical short protein.)
genome : 69,063,315 - 69,066,658 (3,344)
query : 1 - 742 (742/742)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, cyto_nucl 11.5, extr 7, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0204761)
HIX0204761
HIT000713472 (
ENST00000601735
)
(Conserved hypothetical protein.)
genome : 69,063,316 - 69,097,592 (34,277)
query : 1 - 597 (597/597)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15.5, extr_plas 9.5, mito 6.5, E.R._mito 4.5,
pero 3, plas 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0204761)
HIX0200591
HIT000056361
(
BX647714
)
Representative transcript
(Conserved hypothetical protein.)
genome : 69,066,555 - 69,068,522 (1,968)
query : 1 - 1,969 (1,969/1,988)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, cyto 5, nucl 3, cyto_pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200591)
HIX0200557
HIT000203643 (
NM_007114
)
(TATA element modulatory factor; TMF; Androgen receptor coactivator 160 kDa protein; Androgen receptor-associated protein of 160 kDa;)
genome : 69,068,979 - 69,101,484 (32,506)
query : 1 - 6,878 (6,878/6,895)
17 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25, cyto 6, cyto_golg 4.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200557)
HIX0200557
HIT000481741 (
ENST00000398559
)
(TATA element modulatory factor; TMF; Androgen receptor coactivator 160 kDa protein; Androgen receptor-associated protein of 160 kDa;)
genome : 69,068,978 - 69,101,454 (32,477)
query : 1 - 6,849 (6,849/6,849)
17 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25, cyto 6, cyto_golg 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200557)
HIX0200557
HIT000643021 (
ENST00000543976
)
(TATA element modulatory factor; TMF; Androgen receptor coactivator 160 kDa protein; Androgen receptor-associated protein of 160 kDa;)
genome : 69,068,980 - 69,101,484 (32,505)
query : 1 - 6,886 (6,886/6,886)
17 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25, cyto 6, cyto_golg 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200557)
HIX0003441
HIT000021220
(
AK096365
)
Representative transcript
(Activating molecule in BECN1-regulated autophagy protein 1 isoform 1.)
genome : 69,068,980 - 69,071,140 (2,161)
query : 1 - 2,161 (2,161/2,161)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto 8, cyto_nucl 7.83333, cyto_pero 5.66667,
mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003441)
HIX0200557
HIT000329044
(
AB209109
)
Representative transcript
(TATA element modulatory factor; TMF; Androgen receptor coactivator 160 kDa protein; Androgen receptor-associated protein of 160 kDa;)
genome : 69,071,772 - 69,101,454 (29,683)
query : 1 - 4,055 (4,055/4,055)
17 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.999)5'
coverage = 1.000
InterPro :
IPR022091 : TATA element modulatory factor 1 TATA binding
IPR022092 : TATA element modulatory factor 1 DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25, cyto 6, cyto_golg 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200557)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB179247
Rattus
sp. (Rat) : AF107843
Mus
sp. (Mouse) : AK144729
Danio
sp. (Zebrafish) : BC077134
Gallus
sp. (Chicken) : CR391544
Pongo
sp. (Orangutan) : CR858920
Monodelphis
sp. (Opossum) : ENSMODT00000004332
Oryzias
sp. (Medaka) : ENSORLT00000009990
Tetraodon
sp. (Tetraodon) : GSTENT00020999001
Takifugu
sp. (Fugu) : SINFRUT00000127930
Equus
sp. (Horse) : XM_001498669
Pan
sp. (Chimpanzee) : XM_526227
Canis
sp. (Dog) : XM_533766
Bos
sp. (Cow) : XM_868895
HIX0200557
HIT000591681 (
ENST00000488010
)
(TATA element modulatory factor.)
genome : 69,072,228 - 69,101,441 (29,214)
query : 1 - 3,399 (3,399/3,399)
16 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, cyto_golg 11.5, nucl 10
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200557)
HIX0200557
HIT000388715
(
BC126123
)
(TATA element modulatory factor; TMF; Androgen receptor coactivator 160 kDa protein; Androgen receptor-associated protein of 160 kDa;)
genome : 69,072,289 - 69,101,337 (29,049)
query : 1 - 3,421 (3,421/3,421)
17 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.999)5'
coverage = 1.000
InterPro :
IPR022091 : TATA element modulatory factor 1 TATA binding
IPR022092 : TATA element modulatory factor 1 DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25, cyto 6, cyto_golg 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200557)
HIX0200557
HIT000502281
(
BC143840
)
(TATA element modulatory factor; TMF; Androgen receptor coactivator 160 kDa protein; Androgen receptor-associated protein of 160 kDa;)
genome : 69,072,289 - 69,101,337 (29,049)
query : 1 - 3,430 (3,430/3,430)
17 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.999)5'
coverage = 1.000
InterPro :
IPR022091 : TATA element modulatory factor 1 TATA binding
IPR022092 : TATA element modulatory factor 1 DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25, cyto 6, cyto_golg 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200557)
HIX0200557
HIT000387708
(
BC117418
)
(TATA element modulatory factor; TMF; Androgen receptor coactivator 160 kDa protein; Androgen receptor-associated protein of 160 kDa;)
genome : 69,072,295 - 69,101,337 (29,043)
query : 1 - 3,415 (3,415/3,415)
17 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.999)5'
coverage = 1.000
InterPro :
IPR022091 : TATA element modulatory factor 1 TATA binding
IPR022092 : TATA element modulatory factor 1 DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25, cyto 6, cyto_golg 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200557)
HIX0200557
HIT000431563
(
AK312697
)
(TATA element modulatory factor; TMF; Androgen receptor coactivator 160 kDa protein; Androgen receptor-associated protein of 160 kDa;)
genome : 69,072,328 - 69,101,438 (29,111)
query : 1 - 3,483 (3,483/3,483)
17 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;0.995;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.998)5'
coverage = 1.000
InterPro :
IPR022091 : TATA element modulatory factor 1 TATA binding
IPR022092 : TATA element modulatory factor 1 DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25, cyto 6, cyto_golg 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200557)
HIX0200557
HIT000191442
(
L01042
)
(TATA element modulatory factor; TMF; Androgen receptor coactivator 160 kDa protein; Androgen receptor-associated protein of 160 kDa;)
genome : 69,072,328 - 69,101,237 (28,910)
query : 1 - 3,282 (3,282/3,282)
17 exons
identity = 0.998
3'(1.000;1.000;0.968;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.998)5'
coverage = 1.000
InterPro :
IPR022091 : TATA element modulatory factor 1 TATA binding
IPR022092 : TATA element modulatory factor 1 DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25, cyto 6, cyto_golg 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200557)
HIX0200557
HIT000493644
(
AK299020
)
(TATA element modulatory factor.)
genome : 69,072,383 - 69,101,396 (29,014)
query : 1 - 3,134 (3,134/3,134)
18 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.994;1.000;1.000;1.000;1.000;
1.000;0.999;0.983)5'
coverage = 1.000
InterPro :
IPR022091 : TATA element modulatory factor 1 TATA binding
IPR022092 : TATA element modulatory factor 1 DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25, cyto 6, cyto_golg 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200557)
HIX0200557
HIT000592975 (
ENST00000489370
)
(TATA element modulatory factor.)
genome : 69,073,433 - 69,075,251 (1,819)
query : 1 - 372 (372/372)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18, cyto 7, cyto_nucl 7, extr 3, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200557)
HIX0204761
HIT000708063 (
ENST00000596274
)
(Conserved hypothetical protein.)
genome : 69,084,247 - 69,097,715 (13,469)
query : 1 - 515 (515/515)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15.5, extr_plas 9.5, mito 6.5, E.R._mito 4.5,
pero 3, plas 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0204761)
HIX0200557
HIT000093222
(
BC033771
)
(TATA element modulatory factor.)
genome : 69,092,896 - 69,101,429 (8,534)
query : 1 - 1,775 (1,775/1,792)
4 exons
identity = 0.999
3'(0.992;1.000;1.000)5'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23, cyto 8, cyto_golg 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200557)
HIX0200557
HIT000087076
(
BC008454
)
(TATA element modulatory factor.)
genome : 69,092,951 - 69,101,432 (8,482)
query : 1 - 1,723 (1,723/1,752)
4 exons
identity = 0.998
3'(1.000;1.000;0.998)5'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24, cyto 7.5, cyto_golg 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200557)
HIX0200557
HIT000581999 (
ENST00000477872
)
(TATA element modulatory factor.)
genome : 69,092,943 - 69,093,779 (837)
query : 1 - 222 (222/222)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 12.5, cyto 12, nucl 9, extr 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200557)
HIX0205069
HIT000659351 (
NR_036087
)
(Non-protein coding transcript.)
genome : 69,098,109 - 69,098,186 (78)
query : 1 - 78 (78/78)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0205069)
HIX0205069
HIT000695379 (
ENST00000583498
)
(Non-protein coding transcript.)
genome : 69,098,109 - 69,098,186 (78)
query : 1 - 78 (78/78)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0205069)
HIX0003440
pHIT000006969 ( pHIT000006969 )
(EGF domain-specific O-linked N-acetylglucosamine transferase precursor.)
genome : 69,026,769 - 69,063,150 (36,382)
query : 1 - 1,239 (1,239/1,239)
12 exons
EC number :
EC 2.4.1.255
SOSUI :
MEMBRANE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003440)
CAGE tag :
H04BA42B1703,H05BA68F0903,H05BC50G0302
H05BD19D1503,H05BD65A1807
HIX0003440
pHIT000101480 ( pHIT000101480 )
(EGF domain-specific O-linked N-acetylglucosamine transferase; EC=2.4.1.255; Extracellular O-linked N-acetylglucosamine transferase; Precursor;)
genome : 69,026,769 - 69,063,150 (36,382)
query : 1 - 1,359 (1,359/1,359)
13 exons
EC number :
EC 2.4.1.255
InterPro :
IPR007657 : Glycosyltransferase AER61, uncharacterised
GO :
0016757 : Molecular Function : transferase activity, transferring glycosyl groups
SOSUI :
MEMBRANE PROTEIN
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0003440)
CAGE tag :
T03R041FAADF
AC113169.2
67500001-67546813 F +
NCBI
AC112213.3
67546814-67620369 F +
NCBI
AC099783.2
67620370-67730392 F -
NCBI
AC135321.2
67730393-67799043 F +
NCBI
AC113171.3
67799044-67965037 F +
NCBI
AC138390.2
67965038-68087542 F +
NCBI
AC139766.15
68087543-68193004 F +
NCBI
AC092416.3
68193005-68213495 F -
NCBI
AC107626.2
68213496-68375262 F -
NCBI
AC104443.2
68375263-68434046 F -
NCBI
AC104167.2
68434047-68563335 F +
NCBI
AC126123.2
68563336-68604950 F +
NCBI
AC096922.2
68604951-68821305 F -
NCBI
AC104166.2
68821306-68959716 F +
NCBI
AC109587.2
68959717-69100000 F +
NCBI