bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0024588
HIT000118840 (
ENST00000310836
)
genome : 115,519,611 - 115,599,380 (79,770)
query : 1 - 4,084 (4,084/4,084)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024588)
HIX0024588
HIT000559412 (
NM_001128174
)
genome : 115,519,611 - 115,598,202 (78,592)
query : 1 - 2,906 (2,906/2,906)
6 exons
identity = 0.999
5'(0.998;0.999;1.000;1.000;0.995;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024588)
HIX0024588
HIT000047843
(
AK127970
)
genome : 115,519,611 - 115,597,485 (77,875)
query : 1 - 2,172 (2,172/2,172)
6 exons
identity = 0.989
5'(0.958;0.998;1.000;1.000;0.995;1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024588)
HIX0024588
HIT000220745
(
U62899
)
genome : 115,519,910 - 115,597,486 (77,577)
query : 2 - 1,894 (1,893/1,894)
6 exons
identity = 0.993
5'(0.978;0.994;1.000;1.000;0.986;0.998)3'
coverage = 0.999
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024588)
HIX0024588
HIT000607689 (
ENST00000507710
)
genome : 115,519,926 - 115,544,461 (24,536)
query : 1 - 735 (735/735)
3 exons
identity = 0.991
5'(1.000;0.972;0.991)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024588)
HIX0024588
HIT000384893
(
AK225763
)
genome : 115,519,965 - 115,598,015 (78,051)
query : 1 - 2,363 (2,363/2,381)
6 exons
identity = 0.997
5'(0.988;0.996;1.000;1.000;0.995;0.998)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024588)
HIX0024588
HIT000265576
(
BC075069
)
genome : 115,520,086 - 115,597,463 (77,378)
query : 1 - 1,692 (1,692/1,692)
6 exons
identity = 0.998
5'(0.978;0.999;1.000;1.000;0.995;0.997)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024588)
HIX0024588
HIT000200196 (
NM_003360
)
genome : 115,543,523 - 115,598,202 (54,680)
query : 1 - 2,898 (2,898/2,898)
5 exons
identity = 0.999
5'(0.999;1.000;1.000;0.995;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024588)
HIX0024588
HIT000219119
(
U30930
)
genome : 115,543,523 - 115,597,752 (54,230)
query : 1 - 2,448 (2,448/2,448)
5 exons
identity = 0.998
5'(0.999;1.000;1.000;0.995;0.999)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024588)
HIX0024588
HIT000477920 (
ENST00000394511
)
genome : 115,543,523 - 115,597,752 (54,230)
query : 1 - 2,448 (2,448/2,448)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024588)
HIX0024588
HIT000489062
(
AK294438
)
genome : 115,544,108 - 115,597,532 (53,425)
query : 1 - 1,648 (1,648/1,648)
5 exons
identity = 0.994
5'(0.993;0.986;0.987;0.991;1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024588)
HIX0120756
HIT000471049 (
ENST00000385196
)
genome : 115,577,915 - 115,578,010 (96)
query : 1 - 96 (96/96)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0120756)
HIX0120756
HIT000658295 (
NR_030303
)
genome : 115,577,915 - 115,578,010 (96)
query : 1 - 96 (96/96)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0120756)
HIX0024588
HIT000025630
(
AL137342
)
genome : 115,597,775 - 115,599,381 (1,607)
query : 1 - 1,608 (1,608/1,642)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024588)
HIX0206030
HIT000614290 (
ENST00000514821
)
genome : 115,634,735 - 115,636,076 (1,342)
query : 1 - 1,342 (1,342/1,342)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0206030)
HIX0031346
HIT000059166
(
AB036429
)
genome : 115,748,928 - 116,035,032 (286,105)
query : 1 - 3,342 (3,342/3,359)
14 exons
identity = 0.999
3'(0.994;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.998)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0031346)
HIX0031346
HIT000208782 (
NM_022569
)
genome : 115,748,928 - 116,035,032 (286,105)
query : 1 - 3,342 (3,342/3,359)
14 exons
identity = 0.999
3'(0.994;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.998)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0031346)
HIX0031346
HIT000109280 (
ENST00000264363
)
genome : 115,748,928 - 116,035,032 (286,105)
query : 1 - 3,342 (3,342/3,351)
14 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0031346)
HIX0031346
HIT000422467
(
AK289670
)
genome : 115,748,929 - 116,035,010 (286,082)
query : 1 - 3,319 (3,319/3,319)
14 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.989;1.000;0.998)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0031346)
HIX0031346
HIT000340532
(
BC113075
)
genome : 115,748,942 - 116,034,933 (285,992)
query : 1 - 2,015 (2,015/2,015)
13 exons
identity = 1.000
3'(0.993;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0031346)
HIX0031346
HIT000605025 (
ENST00000504854
)
genome : 115,748,942 - 116,034,933 (285,992)
query : 1 - 2,015 (2,015/2,015)
13 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0031346)
HIX0031346
HIT000087824
(
BC012326
)
genome : 115,856,207 - 116,035,005 (178,799)
query : 1 - 1,231 (1,231/1,248)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0031346)
HIX0031346
HIT000614055 (
ENST00000514570
)
genome : 115,856,204 - 116,035,005 (178,802)
query : 1 - 1,234 (1,234/1,234)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0031346)
HIX0205950
HIT000613025 (
ENST00000513456
)
genome : 116,064,138 - 116,064,459 (322)
query : 1 - 322 (322/322)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0205950)
HIX0205490
HIT000604881 (
ENST00000504693
)
genome : 116,549,968 - 116,550,863 (896)
query : 1 - 896 (896/896)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0205490)
HIX0205896
HIT000612140 (
ENST00000512491
)
genome : 116,685,255 - 116,685,975 (721)
query : 1 - 721 (721/721)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0205896)
HIX0206079
HIT000615176 (
ENST00000515767
)
genome : 116,841,863 - 116,843,134 (1,272)
query : 1 - 1,272 (1,272/1,272)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0206079)
HIX0205186
HIT000608343 (
ENST00000508414
)
genome : 116,843,171 - 117,218,316 (375,146)
query : 1 - 457 (457/457)
3 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0205186)
HIX0206011
HIT000613953 (
ENST00000514461
)
genome : 116,964,563 - 116,965,201 (639)
query : 1 - 639 (639/639)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0206011)
HIX0205186
HIT000612731 (
ENST00000513136
)
genome : 117,016,266 - 117,018,222 (1,957)
query : 1 - 1,957 (1,957/1,957)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0205186)
HIX0205186
HIT000609811 (
ENST00000509983
)
genome : 117,017,447 - 117,218,313 (200,867)
query : 1 - 716 (716/716)
3 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0205186)
HIX0031732
HIT000096950
(
BC041909
)
genome : 117,097,940 - 117,099,550 (1,611)
query : 3 - 1,613 (1,611/1,628)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 0.999
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0031732)
AC093914.3
115500001-115513615 F +
NCBI
AC127386.5
115513616-115530168 F +
NCBI
AC122938.3
115530169-115679196 F +
NCBI
AC110777.3
115679197-115780766 F +
NCBI
AC109821.5
115780767-115884889 F +
NCBI
AC097519.2
115884890-115951256 F +
NCBI
AC093656.4
115951257-116101582 F +
NCBI
AC097513.2
116101583-116250971 F +
NCBI
AC107389.4
116250972-116353830 F +
NCBI
AC079774.4
116353831-116450704 F +
NCBI
AC110085.3
116450705-116528719 F +
NCBI
AC093744.2
116528720-116715633 F +
NCBI
AC093657.4
116715634-116876322 F +
NCBI
AC020701.8
116876323-117003894 F +
NCBI
AC027613.6
117003895-117100000 F +
NCBI