bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0004173
HIT000485270 (
NM_001098634
)
(RNA-binding protein 47 isoform a.)
genome : 40,425,272 - 40,631,883 (206,612)
query : 1 - 5,141 (5,141/5,160)
7 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004173)
HIX0004173
HIT000207555 (
NM_019027
)
(RNA-binding protein 47 isoform b.)
genome : 40,425,272 - 40,517,990 (92,719)
query : 1 - 4,485 (4,485/4,504)
5 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27, mito 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004173)
HIX0004173
HIT000122116 (
ENST00000319592
)
(RNA-binding protein 47 isoform b.)
genome : 40,425,272 - 40,631,883 (206,612)
query : 1 - 4,934 (4,934/4,934)
6 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004173)
HIX0004173
HIT000363073 (
ENST00000381795
)
(RNA-binding protein 47 isoform b.)
genome : 40,425,284 - 40,517,990 (92,707)
query : 1 - 4,473 (4,473/4,473)
5 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004173)
HIX0004173
HIT000363071 (
ENST00000381793
)
(RNA-binding protein 47 isoform a.)
genome : 40,425,284 - 40,516,775 (91,492)
query : 1 - 4,816 (4,816/4,816)
6 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004173)
HIX0004173
HIT000264414
(
BC071585
)
Representative transcript
(RNA-binding protein 47 isoform a.)
genome : 40,425,712 - 40,631,881 (206,170)
query : 1 - 4,935 (4,935/4,950)
7 exons
identity = 0.999
3'(1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000504 : RNA recognition motif domain
IPR006535 : HnRNP R/Q splicing factor
IPR012677 : Nucleotide-binding alpha-beta plait domain
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30.5, cyto_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004173)
Ortholog candidate ( ->
Evola
)
Canis
sp. (Dog) : AJ388555
Mus
sp. (Mouse) : AK170082
Rattus
sp. (Rat) : AY724525
Bos
sp. (Cow) : BT030559
Pongo
sp. (Orangutan) : CR860813
Gallus
sp. (Chicken) : ENSGALT00000023079
Oryzias
sp. (Medaka) : ENSORLT00000007357
Tetraodon
sp. (Tetraodon) : GSTENT00011611001
Danio
sp. (Zebrafish) : NM_001114686
Takifugu
sp. (Fugu) : SINFRUT00000160123
Macaca
sp. (Macaque) : XM_001095241
Pan
sp. (Chimpanzee) : XM_001145550
Monodelphis
sp. (Opossum) : XM_001365515
Equus
sp. (Horse) : XM_001917306
HIX0004173
HIT000610623 (
ENST00000510871
)
(RNA-binding protein 47 isoform b.)
genome : 40,425,698 - 40,631,881 (206,184)
query : 1 - 4,951 (4,951/4,951)
7 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30.5, cyto_nucl 16.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004173)
HIX0004173
HIT000002755
(
AK000280
)
(RNA-binding protein 47 isoform b.)
genome : 40,425,738 - 40,517,968 (92,231)
query : 1 - 3,997 (3,997/4,020)
5 exons
identity = 0.996
3'(1.000)5'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004173)
HIX0004173
HIT000114356 (
ENST00000295971
)
(RNA-binding protein 47 isoform a.)
genome : 40,426,355 - 40,631,881 (205,527)
query : 1 - 4,056 (4,056/4,056)
7 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004173)
HIX0004173
HIT000057051
(
BX648404
)
(RNA-binding protein 47 isoform b.)
genome : 40,426,460 - 40,516,585 (90,126)
query : 2 - 1,975 (1,974/2,057)
5 exons
identity = 0.994
3'(1.000)5'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 26, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004173)
HIX0004173
HIT000498830
(
AK304206
)
(RNA-binding protein 47 isoform a.)
genome : 40,427,429 - 40,632,640 (205,212)
query : 1 - 2,419 (2,419/2,419)
6 exons
identity = 0.999
3'(1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000504 : RNA recognition motif domain
IPR006535 : HnRNP R/Q splicing factor
IPR012677 : Nucleotide-binding alpha-beta plait domain
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004173)
HIX0004173
HIT000613543 (
ENST00000514014
)
(RNA-binding protein 47 isoform a.)
genome : 40,427,429 - 40,632,640 (205,212)
query : 1 - 2,419 (2,419/2,419)
6 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004173)
HIX0004173
HIT000075459
(
AF262323
)
(RNA-binding protein 47 isoform b.)
genome : 40,427,452 - 40,516,592 (89,141)
query : 9 - 2,473 (2,465/2,473)
6 exons
identity = 0.993
3'(1.000)5'
coverage = 1.000
InterPro :
IPR000504 : RNA recognition motif domain
IPR006535 : HnRNP R/Q splicing factor
IPR012677 : Nucleotide-binding alpha-beta plait domain
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004173)
HIX0004173
HIT000093420
(
BC034402
)
(RNA-binding protein 47 isoform a.)
genome : 40,434,720 - 40,631,861 (197,142)
query : 1 - 2,178 (2,178/2,178)
6 exons
identity = 0.998
3'(0.988;0.998)5'
coverage = 1.000
InterPro :
IPR000504 : RNA recognition motif domain
IPR006535 : HnRNP R/Q splicing factor
IPR012677 : Nucleotide-binding alpha-beta plait domain
GO :
0000166 : Molecular Function : nucleotide binding
0003676 : Molecular Function : nucleic acid binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004173)
HIX0004173
HIT000614510 (
ENST00000515053
)
(RNA-binding protein 47 isoform b.)
genome : 40,440,259 - 40,632,333 (192,075)
query : 1 - 1,100 (1,100/1,100)
4 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004173)
HIX0004173
HIT000613042 (
ENST00000513473
)
(RNA-binding protein 47 isoform b.)
genome : 40,440,332 - 40,516,560 (76,229)
query : 1 - 882 (882/882)
4 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004173)
HIX0004173
HIT000605550 (
ENST00000505414
)
(RNA-binding protein 47 isoform b.)
genome : 40,440,435 - 40,632,862 (192,428)
query : 1 - 856 (856/856)
4 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30.5, cyto_nucl 16.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004173)
HIX0004173
HIT000614252 (
ENST00000514782
)
(RNA-binding protein 47 isoform b.)
genome : 40,440,499 - 40,632,140 (191,642)
query : 1 - 797 (797/797)
4 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31.5, cyto_nucl 16.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004173)
HIX0004173
HIT000611305 (
ENST00000511598
)
(RNA-binding protein 47 isoform b.)
genome : 40,440,570 - 40,632,892 (192,323)
query : 1 - 836 (836/836)
5 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 17.5, nucl 9.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004173)
HIX0004173
HIT000611594 (
ENST00000511902
)
(RNA-binding protein 47 isoform b.)
genome : 40,440,732 - 40,632,803 (192,072)
query : 1 - 657 (657/657)
3 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18.5, cyto_nucl 15.5, cyto 7.5, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004173)
HIX0004173
HIT000605369 (
ENST00000505220
)
(RNA-binding protein 47 isoform b.)
genome : 40,440,733 - 40,632,803 (192,071)
query : 1 - 741 (741/741)
4 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18.5, cyto_nucl 15.5, cyto 7.5, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004173)
HIX0215997
HIT000693781 (
ENST00000581881
)
(Non-protein coding transcript.)
genome : 40,504,057 - 40,504,136 (80)
query : 1 - 80 (80/80)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215997)
HIX0215997
HIT000726029 (
NR_039966
)
(Non-protein coding transcript.)
genome : 40,504,057 - 40,504,136 (80)
query : 1 - 80 (80/80)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215997)
HIX0004173
HIT000013766
(
AK057152
)
(Conserved hypothetical protein.)
genome : 40,544,540 - 40,631,546 (87,007)
query : 1 - 2,117 (2,117/2,117)
2 exons
identity = 0.995
3'(0.995;0.993)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 14.5, cyto 7.5, extr 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004173)
HIX0004173
HIT000612646 (
ENST00000513044
)
(Conserved hypothetical protein.)
genome : 40,544,540 - 40,631,546 (87,007)
query : 1 - 2,118 (2,118/2,118)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 14.5, cyto 7.5, extr 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004173)
HIX0022176
HIT000097217
(
BC042401
)
Representative transcript
(Putative methyltransferase NSUN7; EC=2.1.1.-; NOL1/NOP2/Sun domain family member 7;)
genome : 40,751,914 - 40,812,001 (60,088)
query : 1 - 3,696 (3,696/3,790)
12 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.999)3'
coverage = 1.000
EC number :
EC 2.1.1.-
InterPro :
IPR001678 : SAM-dependent methyltransferase RsmB/NOP2-type
IPR029063 : S-adenosyl-L-methionine-dependent methyltransferase
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14, cyto 12, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022176)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB168764
Rattus
sp. (Rat) : BC083653
Mus
sp. (Mouse) : BC115878
Bos
sp. (Cow) : BC126645
Danio
sp. (Zebrafish) : ENSDART00000103003
Equus
sp. (Horse) : ENSECAT00000024256
Pongo
sp. (Orangutan) : ENSPPYT00000017078
Pan
sp. (Chimpanzee) : XM_001147079
Monodelphis
sp. (Opossum) : XM_001373390
Gallus
sp. (Chicken) : XM_420736
Canis
sp. (Dog) : XM_536247
HIX0022176
HIT000209378 (
NM_024677
)
(Putative methyltransferase NSUN7; EC=2.1.1.-; NOL1/NOP2/Sun domain family member 7;)
genome : 40,751,914 - 40,812,001 (60,088)
query : 1 - 3,697 (3,697/3,711)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.999)3'
coverage = 1.000
EC number :
EC 2.1.1.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15, cyto 10, extr 3, pero 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022176)
HIX0022176
HIT000363060 (
ENST00000381782
)
(Putative methyltransferase NSUN7; EC=2.1.1.-; NOL1/NOP2/Sun domain family member 7;)
genome : 40,751,914 - 40,812,002 (60,089)
query : 1 - 3,698 (3,698/3,698)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.1.1.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15, cyto 10, extr 3, pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022176)
HIX0022176
HIT000051745
(
BC036568
)
(Putative methyltransferase NSUN7; EC=2.1.1.-; NOL1/NOP2/Sun domain family member 7;)
genome : 40,751,942 - 40,812,001 (60,060)
query : 1 - 3,548 (3,548/3,562)
11 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.991;
1.000;1.000;1.000;0.996)3'
coverage = 1.000
EC number :
EC 2.1.1.-
InterPro :
IPR001678 : SAM-dependent methyltransferase RsmB/NOP2-type
IPR029063 : S-adenosyl-L-methionine-dependent methyltransferase
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11, cysk 9, nucl 6, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022176)
HIX0022176
HIT000120967 (
ENST00000316607
)
(Putative methyltransferase NSUN7; EC=2.1.1.-; NOL1/NOP2/Sun domain family member 7;)
genome : 40,751,942 - 40,812,002 (60,061)
query : 1 - 3,546 (3,546/3,546)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.1.1.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11, cysk 10, nucl 5, cysk_plas 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022176)
HIX0022176
HIT000007337
(
AK024063
)
(Putative methyltransferase NSUN7; EC=2.1.1.-; NOL1/NOP2/Sun domain family member 7;)
genome : 40,751,981 - 40,777,473 (25,493)
query : 1 - 1,759 (1,759/1,759)
6 exons
identity = 0.998
5'(1.000;1.000;0.983;1.000;1.000;0.997)3'
coverage = 1.000
EC number :
EC 2.1.1.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 18, cyto 6, extr 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022176)
HIX0022176
HIT000577731 (
ENST00000473399
)
(Putative methyltransferase NSUN7; EC=2.1.1.-; NOL1/NOP2/Sun domain family member 7;)
genome : 40,751,981 - 40,777,473 (25,493)
query : 1 - 1,759 (1,759/1,759)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.1.1.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
cysk 17, cyto 6, extr 5, nucl 2, golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022176)
HIX0022176
HIT000498672
(
AK304048
)
(Putative methyltransferase NSUN7; EC=2.1.1.-; NOL1/NOP2/Sun domain family member 7;)
genome : 40,752,192 - 40,811,670 (59,479)
query : 3 - 3,090 (3,088/3,090)
12 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.992;0.998)3'
coverage = 0.999
EC number :
EC 2.1.1.-
InterPro :
IPR001678 : SAM-dependent methyltransferase RsmB/NOP2-type
IPR029063 : S-adenosyl-L-methionine-dependent methyltransferase
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16, cyto 9, extr 3, pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022176)
HIX0022176
HIT000568725 (
ENST00000463952
)
(Putative methyltransferase NSUN7; EC=2.1.1.-; NOL1/NOP2/Sun domain family member 7;)
genome : 40,764,623 - 40,778,205 (13,583)
query : 1 - 763 (763/763)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.1.1.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 13.5, cyto 12.5, mito_pero 8, cyto_nucl 7.5,
extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022176)
HIX0022176
HIT000049619
(
AK130348
)
(Conserved hypothetical protein.)
genome : 40,773,781 - 40,775,699 (1,919)
query : 1 - 1,919 (1,919/1,919)
1 exon
identity = 0.990
5'(0.990)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto 11, mito 5, nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022176)
HIX0022176
HIT000573570 (
ENST00000469033
)
(Putative methyltransferase NSUN7; EC=2.1.1.-; NOL1/NOP2/Sun domain family member 7;)
genome : 40,776,282 - 40,778,493 (2,212)
query : 1 - 765 (765/765)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.1.1.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 22.5, cyto_nucl 12.5, mito 4, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022176)
HIX0022176
HIT000521718 (
ENST00000423784
)
(Putative methyltransferase NSUN7; EC=2.1.1.-; NOL1/NOP2/Sun domain family member 7;)
genome : 40,778,092 - 40,810,520 (32,429)
query : 1 - 726 (726/726)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.1.1.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto 12
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022176)
HIX0205629
HIT000607375_01 (
ENST00000507378
)
(Small GTPase superfamily, ARF/SAR type protein.)
genome : 40,788,127 - 40,788,727 (601)
query : 1 - 601 (601/601)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, cyto_nucl 11, nucl 7.5, extr 6, mito 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0205629)
HIX0022176
HIT000019153
(
AK094298
)
(Putative methyltransferase NSUN7; EC=2.1.1.-; NOL1/NOP2/Sun domain family member 7;)
genome : 40,800,797 - 40,812,000 (11,204)
query : 10 - 1,936 (1,927/1,936)
3 exons
identity = 0.998
5'(0.976;1.000;0.999)3'
coverage = 0.995
EC number :
EC 2.1.1.-
InterPro :
IPR029063 : S-adenosyl-L-methionine-dependent methyltransferase
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15, extr 8, cyto 4, extr_plas 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022176)
HIX0022176
HIT000582945 (
ENST00000478857
)
(Putative methyltransferase NSUN7; EC=2.1.1.-; NOL1/NOP2/Sun domain family member 7;)
genome : 40,800,891 - 40,810,560 (9,670)
query : 1 - 413 (413/413)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 2.1.1.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto 6, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022176)
HIX0020340
HIT000654233 (
NM_001166053
)
(Amyloid beta A4 precursor protein-binding family B member 2 isoform d.)
genome : 40,812,044 - 40,859,209 (47,166)
query : 1 - 6,989 (6,989/7,018)
7 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;0.977)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto 12.5, cyto_nucl 8.5, extr_plas 8.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020340)
HIX0020340
HIT000654234 (
NM_001166054
)
(Amyloid beta A4 precursor protein-binding family B member 2; Protein Fe65-like 1;)
genome : 40,812,044 - 40,859,209 (47,166)
query : 1 - 6,983 (6,983/7,012)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto 12.5, cyto_nucl 8.5, extr_plas 8.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020340)
HIX0020340
HIT000654231 (
NM_001166051
)
(Amyloid beta A4 precursor protein-binding family B member 2; Protein Fe65-like 1;)
genome : 40,812,044 - 40,859,172 (47,129)
query : 1 - 6,993 (6,993/7,022)
7 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;0.977)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto 12.5, cyto_nucl 8.5, extr_plas 8.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020340)
HIX0020340
HIT000654232 (
NM_001166052
)
(Amyloid beta A4 precursor protein-binding family B member 2; Protein Fe65-like 1;)
genome : 40,812,044 - 40,859,172 (47,129)
query : 1 - 6,987 (6,987/7,016)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto 12.5, cyto_nucl 8.5, extr_plas 8.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020340)
HIX0020340
HIT000024251
(
AL080130
)
(Conserved hypothetical protein.)
genome : 40,812,044 - 40,816,007 (3,964)
query : 2 - 3,961 (3,960/3,990)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, nucl 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020340)
HIX0020340
HIT000642583 (
ENST00000543538
)
(Amyloid beta A4 precursor protein-binding family B member 2; Protein Fe65-like 1;)
genome : 40,812,045 - 40,859,172 (47,128)
query : 1 - 6,992 (6,992/6,992)
7 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;0.977)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto 12.5, cyto_nucl 8.5, extr_plas 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020340)
HIX0205933
HIT000612722 (
ENST00000513127
)
(Conserved hypothetical protein.)
genome : 40,814,796 - 40,828,168 (13,373)
query : 1 - 477 (477/477)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
This sequence is too short.
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0205933)
HIX0020340
HIT000385309_03
(
AK226179
)
Representative transcript
(Amyloid beta A4 precursor protein-binding family B member 2; Protein Fe65-like 1;)
genome : 40,817,341 - 41,216,549 (399,209)
query : 1 - 3,592 (3,592/3,592)
18 exons
identity = 0.998
3'(0.998;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.940;1.000;0.998;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001202 : WW domain
IPR006020 : PTB/PI domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24.5, cyto_nucl 16.5, cyto 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020340)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK167649
Bos
sp. (Cow) : BC123464
Pongo
sp. (Orangutan) : CR857968
Equus
sp. (Horse) : ENSECAT00000022036
Oryzias
sp. (Medaka) : ENSORLT00000005497
Oryzias
sp. (Medaka) : ENSORLT00000007341
Tetraodon
sp. (Tetraodon) : GSTENT00008068001
Takifugu
sp. (Fugu) : SINFRUT00000166223
Rattus
sp. (Rat) : XM_001077874
Macaca
sp. (Macaque) : XM_001097230
Pan
sp. (Chimpanzee) : XM_001146547
Monodelphis
sp. (Opossum) : XM_001373370
Danio
sp. (Zebrafish) : XM_688300
Canis
sp. (Dog) : XM_857954
HIX0020340
HIT000603165 (
ENST00000502841
)
(Amyloid beta A4 precursor protein-binding family B member 2; Protein Fe65-like 1;)
genome : 40,817,350 - 40,859,172 (41,823)
query : 1 - 1,681 (1,681/1,681)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto 12.5, cyto_nucl 8.5, extr_plas 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020340)
HIX0020340
HIT000494424
(
AK299800
)
(Amyloid beta A4 precursor protein-binding family B member 2; Protein Fe65-like 1;)
genome : 40,817,444 - 40,859,143 (41,700)
query : 1 - 1,558 (1,558/1,558)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR006020 : PTB/PI domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto 12.5, cyto_nucl 8.5, extr_plas 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020340)
HIX0020340
HIT000604534 (
ENST00000504305
)
(Amyloid beta A4 precursor protein-binding family B member 2; Protein Fe65-like 1;)
genome : 40,817,763 - 40,859,172 (41,410)
query : 1 - 1,274 (1,274/1,274)
7 exons
identity = 0.997
3'(1.000;1.000;1.000;1.000;1.000;1.000;0.977)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto 12.5, cyto_nucl 8.5, extr_plas 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020340)
HIX0020340
HIT000603021 (
ENST00000502687
)
(Amyloid beta A4 precursor protein-binding family B member 1; Protein Fe65;)
genome : 40,817,990 - 40,824,483 (6,494)
query : 1 - 883 (883/883)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020340)
HIX0020340
HIT000610672 (
ENST00000510925
)
(Amyloid beta A4 precursor protein-binding family B member 2 isoform d.)
genome : 40,818,102 - 40,832,532 (14,431)
query : 1 - 701 (701/701)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto 12.5, cyto_nucl 8.5, extr_plas 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020340)
HIX0020340
HIT000610438 (
ENST00000510670
)
(Amyloid beta A4 precursor protein-binding family B member 2; Protein Fe65-like 1;)
genome : 40,825,646 - 40,859,209 (33,564)
query : 1 - 587 (587/591)
5 exons
identity = 0.991
3'(0.962;1.000;1.000;1.000;1.000)5'
coverage = 0.993
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, mito 10, cyto_nucl 10, nucl 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020340)
HIX0020340
HIT000614385 (
ENST00000514920
)
(Amyloid beta A4 precursor protein-binding family B member 2; Protein Fe65-like 1;)
genome : 40,825,661 - 40,844,533 (18,873)
query : 1 - 550 (550/550)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11, extr 10, mito 7, nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020340)
HIX0020340
HIT000613079 (
ENST00000513516
)
(Amyloid beta A4 precursor protein-binding family B member 2 isoform d.)
genome : 40,825,685 - 40,859,194 (33,510)
query : 1 - 537 (537/537)
5 exons
identity = 0.993
3'(1.000;1.000;1.000;1.000;0.975)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, cyto_nucl 11, mito 10, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020340)
HIX0020340
HIT000490598
(
AK295974
)
(Amyloid beta A4 precursor protein-binding family B member 2; Protein Fe65-like 1;)
genome : 40,892,326 - 41,016,402 (124,077)
query : 1 - 1,486 (1,486/1,486)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001202 : WW domain
IPR006020 : PTB/PI domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020340)
HIX0020340
HIT000609339 (
ENST00000509475
)
(Amyloid beta A4 precursor protein-binding family B member 2; Protein Fe65-like 1;)
genome : 40,892,326 - 41,016,402 (124,077)
query : 1 - 1,486 (1,486/1,486)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020340)
HIX0020340
HIT000008145
(
AK024871
)
(Amyloid beta A4 precursor protein-binding family B member 2; Protein Fe65-like 1;)
genome : 40,894,412 - 40,937,643 (43,232)
query : 1 - 2,092 (2,092/2,162)
3 exons
identity = 0.999
3'(0.998;1.000;1.000)5'
coverage = 0.976
InterPro :
IPR006020 : PTB/PI domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, cyto_nucl 7, nucl 5.5, cyto 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020340)
HIX0020340
HIT000604696 (
ENST00000504484
)
(Amyloid beta A4 precursor protein-binding family B member 2; Protein Fe65-like 1;)
genome : 40,894,412 - 40,937,643 (43,232)
query : 1 - 2,091 (2,091/2,091)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, cyto_nucl 7, nucl 5.5, cyto 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020340)
HIX0020340
HIT000610855 (
ENST00000511120
)
(Amyloid beta A4 precursor protein-binding family B member 2; Protein Fe65-like 1;)
genome : 40,895,380 - 40,937,457 (42,078)
query : 1 - 560 (560/560)
4 exons
identity = 0.993
3'(1.000;1.000;1.000;0.989)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 11, nucl 10, cyto 8, extr 6, mito 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020340)
HIX0020340
HIT000609311 (
ENST00000509446
)
(Amyloid beta A4 precursor protein-binding family B member 2; Protein Fe65-like 1;)
genome : 41,015,964 - 41,216,510 (200,547)
query : 1 - 907 (907/907)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 25, mito 3, extr 1, cyto 1, pero 1, cysk 1,
cyto_pero 1
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020340)
HIX0020340
HIT000608620 (
ENST00000508707
)
(Amyloid beta A4 precursor protein-binding family B member 2; Protein Fe65-like 1;)
genome : 41,016,230 - 41,216,537 (200,308)
query : 1 - 639 (639/639)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, cyto_nucl 13.5, cyto 12.5, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020340)
HIX0020340
HIT000603563 (
ENST00000503264
)
(Conserved hypothetical protein.)
genome : 41,016,305 - 41,216,535 (200,231)
query : 1 - 493 (493/493)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020340)
HIX0020340
HIT000608593 (
ENST00000508676
)
(Conserved hypothetical protein.)
genome : 41,016,353 - 41,216,625 (200,273)
query : 1 - 604 (604/604)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020340)
HIX0020340
HIT000603789 (
ENST00000503503
)
(Conserved hypothetical protein.)
genome : 41,035,253 - 41,216,502 (181,250)
query : 1 - 533 (533/544)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.980
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020340)
HIX0020340
HIT000603834 (
ENST00000503555
)
(Hypothetical short protein.)
genome : 41,067,607 - 41,209,925 (142,319)
query : 1 - 556 (556/556)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21.5, cyto_nucl 16, nucl 5.5, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020340)
HIX0020340
HIT000611283 (
ENST00000511572
)
(Conserved hypothetical protein.)
genome : 41,067,622 - 41,216,586 (148,965)
query : 1 - 619 (619/619)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020340)
HIX0020340
HIT000607023 (
ENST00000506999
)
(Hypothetical short protein.)
genome : 41,102,642 - 41,216,586 (113,945)
query : 1 - 564 (564/565)
4 exons
identity = 0.989
3'(0.952;1.000;1.000;1.000)5'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020340)
HIX0020340
HIT000603016 (
ENST00000502682
)
(Hypothetical short protein.)
genome : 41,102,652 - 41,218,731 (116,080)
query : 1 - 481 (481/482)
3 exons
identity = 0.998
3'(0.991;1.000;1.000)5'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020340)
HIX0020340
HIT000605412 (
ENST00000505266
)
(Conserved hypothetical protein.)
genome : 41,195,810 - 41,216,514 (20,705)
query : 1 - 446 (446/446)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, nucl 8, cyto_nucl 6.5, cyto 3, golg 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0020340)
HIX0205174
HIT000607196 (
ENST00000507190
)
(Conserved hypothetical protein.)
genome : 41,222,091 - 41,258,744 (36,654)
query : 1 - 592 (592/592)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 12.5, extr 10, cyto_nucl 9, nucl 4.5, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0205174)
HIX0205174
HIT000727843 (
NR_102709
)
(Conserved hypothetical protein.)
genome : 41,222,091 - 41,258,744 (36,654)
query : 1 - 592 (592/592)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 12.5, extr 10, cyto_nucl 9, nucl 4.5, mito 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0205174)
HIX0205174
HIT000609899 (
ENST00000510073
)
(Conserved hypothetical protein.)
genome : 41,255,900 - 41,258,738 (2,839)
query : 1 - 451 (451/451)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11.5, cyto_nucl 10.5, extr 9, nucl 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0205174)
HIX0004176
HIT000614389 (
ENST00000514924
)
(Ubiquitin carboxyl-terminal hydrolase isozyme L1; UCH-L1; EC=3.4.19.12; EC=6.-.-.-; Neuron cytoplasmic protein 9.5; PGP 9.5; PGP9.5; Ubiquitin thioesterase L1; Precursor;)
genome : 41,258,430 - 41,259,754 (1,325)
query : 1 - 445 (445/445)
4 exons
identity = 0.984
5'(1.000;1.000;0.903;1.000)3'
coverage = 1.000
EC number :
EC 3.4.19.12
,
EC 6.-.-.-
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 9, extr 8, mito_pero 6.33333, mito 5,
extr_plas 5, pero 4.5, cyto_golg 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004176)
HIX0004176
HIT000603721 (
ENST00000503431
)
(Ubiquitin carboxyl-terminal hydrolase isozyme L1; UCH-L1; EC=3.4.19.12; EC=6.-.-.-; Neuron cytoplasmic protein 9.5; PGP 9.5; PGP9.5; Ubiquitin thioesterase L1; Precursor;)
genome : 41,258,786 - 41,270,273 (11,488)
query : 1 - 917 (917/917)
9 exons
identity = 0.992
5'(1.000;0.903;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.4.19.12
,
EC 6.-.-.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, extr 8, cyto_plas 8, nucl 3, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004176)
HIX0004176
HIT000112489 (
ENST00000284440
)
(Ubiquitin carboxyl-terminal hydrolase isozyme L1; UCH-L1; EC=3.4.19.12; EC=6.-.-.-; Neuron cytoplasmic protein 9.5; PGP 9.5; PGP9.5; Ubiquitin thioesterase L1; Precursor;)
genome : 41,258,850 - 41,270,446 (11,597)
query : 1 - 1,172 (1,172/1,172)
8 exons
identity = 0.994
5'(0.963;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
EC number :
EC 3.4.19.12
,
EC 6.-.-.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, extr 8, cyto_plas 8, nucl 3, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004176)
HIX0004176
eHIT000017314 ( ESTsASS_4_233 )
(Non-protein coding transcript.)
genome : 41,258,854 - 41,270,142 (11,289)
query : 1 - 893 (893/893)
9 exons
ESTs assembly
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004176)
ESTs used for assembly :
AW246946,H29917,BE311888,BI547458
BF036499,BU076465,BG751712,BG716556
DT218914
HIX0004176
HIT000200948 (
NM_004181
)
(Ubiquitin carboxyl-terminal hydrolase isozyme L1; UCH-L1; EC=3.4.19.12; EC=6.-.-.-; Neuron cytoplasmic protein 9.5; PGP 9.5; PGP9.5; Ubiquitin thioesterase L1; Precursor;)
genome : 41,258,898 - 41,270,446 (11,549)
query : 1 - 1,124 (1,124/1,141)
8 exons
identity = 0.994
5'(0.950;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
EC number :
EC 3.4.19.12
,
EC 6.-.-.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, extr 8, cyto_plas 8, nucl 3, mito 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004176)
HIX0004176
HIT000363038 (
ENST00000381760
)
(Ubiquitin carboxyl-terminal hydrolase isozyme L1; UCH-L1; EC=3.4.19.12; EC=6.-.-.-; Neuron cytoplasmic protein 9.5; PGP 9.5; PGP9.5; Ubiquitin thioesterase L1; Precursor;)
genome : 41,258,925 - 41,270,445 (11,521)
query : 1 - 1,578 (1,578/1,578)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
EC number :
EC 3.4.19.12
,
EC 6.-.-.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11.5, cyto_nucl 7.5, plas 5, mito 5, extr 3,
pero 3, nucl 2.5, E.R._mito 2.5, cysk_plas 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004176)
HIX0004176
HIT000612079 (
ENST00000512419
)
(Ubiquitin carboxyl-terminal hydrolase isozyme L3 isoform 1.)
genome : 41,258,928 - 41,270,472 (11,545)
query : 1 - 1,119 (1,119/1,119)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
EC number :
EC 3.4.19.12
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 10, cyto 9, plas 3, extr 3, nucl 3, extr_plas 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004176)
HIX0004176
HIT000029526
(
BC000332
)
Representative transcript
(Ubiquitin carboxyl-terminal hydrolase isozyme L1; UCH-L1; EC=3.4.19.12; EC=6.-.-.-; Neuron cytoplasmic protein 9.5; PGP 9.5; PGP9.5; Ubiquitin thioesterase L1; Precursor;)
genome : 41,258,929 - 41,270,446 (11,518)
query : 1 - 1,093 (1,093/1,110)
8 exons
identity = 0.994
5'(0.936;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
EC number :
EC 3.4.19.12
,
EC 6.-.-.-
InterPro :
IPR001578 : Peptidase C12, ubiquitin carboxyl-terminal hydrolase
GO :
0004843 : Molecular Function : ubiquitin-specific protease activity
0005622 : Cellular Component : intracellular
0006511 : Biological Process : ubiquitin-dependent protein catabolic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, extr 8, cyto_plas 8, nucl 3, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004176)
Ortholog candidate ( ->
Evola
)
Equus
sp. (Horse) : AB013344
Macaca
sp. (Macaque) : AB056429
Mus
sp. (Mouse) : AK013729
Danio
sp. (Zebrafish) : BC049044
Rattus
sp. (Rat) : BC060573
Bos
sp. (Cow) : BC111330
Gallus
sp. (Chicken) : BX950489
Tetraodon
sp. (Tetraodon) : CR705821
Oryzias
sp. (Medaka) : ENSORLT00000009828
Pongo
sp. (Orangutan) : ENSPPYT00000017082
Takifugu
sp. (Fugu) : SINFRUT00000176482
Pan
sp. (Chimpanzee) : XM_001147600
Monodelphis
sp. (Opossum) : XM_001365380
Canis
sp. (Dog) : XM_536245
HIX0004176
HIT000089756
(
BC018838
)
(Ubiquitin carboxyl-terminal hydrolase isozyme L1; UCH-L1; EC=3.4.19.12; EC=6.-.-.-; Neuron cytoplasmic protein 9.5; PGP 9.5; PGP9.5; Ubiquitin thioesterase L1; Precursor;)
genome : 41,258,929 - 41,270,446 (11,518)
query : 1 - 1,093 (1,093/1,110)
8 exons
identity = 0.994
5'(0.936;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
EC number :
EC 3.4.19.12
,
EC 6.-.-.-
InterPro :
IPR001578 : Peptidase C12, ubiquitin carboxyl-terminal hydrolase
GO :
0004843 : Molecular Function : ubiquitin-specific protease activity
0005622 : Cellular Component : intracellular
0006511 : Biological Process : ubiquitin-dependent protein catabolic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, extr 8, cyto_plas 8, nucl 3, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004176)
HIX0004176
HIT000011193
(
AK054579
)
(Ubiquitin carboxyl-terminal hydrolase isozyme L1; UCH-L1; EC=3.4.19.12; EC=6.-.-.-; Neuron cytoplasmic protein 9.5; PGP 9.5; PGP9.5; Ubiquitin thioesterase L1; Precursor;)
genome : 41,258,945 - 41,270,445 (11,501)
query : 1 - 1,558 (1,558/1,558)
8 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.998)3'
coverage = 1.000
EC number :
EC 3.4.19.12
,
EC 6.-.-.-
InterPro :
IPR001578 : Peptidase C12, ubiquitin carboxyl-terminal hydrolase
GO :
0004843 : Molecular Function : ubiquitin-specific protease activity
0005622 : Cellular Component : intracellular
0006511 : Biological Process : ubiquitin-dependent protein catabolic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11.5, cyto_nucl 7.5, plas 7, mito 4, extr 3,
E.R._mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004176)
HIX0004176
HIT000605381 (
ENST00000505232
)
(Ubiquitin carboxyl-terminal hydrolase isozyme L1; UCH-L1; EC=3.4.19.12; EC=6.-.-.-; Neuron cytoplasmic protein 9.5; PGP 9.5; PGP9.5; Ubiquitin thioesterase L1; Precursor;)
genome : 41,258,949 - 41,270,125 (11,177)
query : 1 - 748 (748/748)
8 exons
identity = 0.991
5'(0.922;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
EC number :
EC 3.4.19.12
,
EC 6.-.-.-
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 16, extr 7, nucl 4, extr_plas 4, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004176)
HIX0004176
HIT000434234
(
AK315368
)
(Ubiquitin carboxyl-terminal hydrolase isozyme L1; UCH-L1; EC=3.4.19.12; EC=6.-.-.-; Neuron cytoplasmic protein 9.5; PGP 9.5; PGP9.5; Ubiquitin thioesterase L1; Precursor;)
genome : 41,258,949 - 41,270,090 (11,142)
query : 1 - 717 (717/717)
8 exons
identity = 0.987
5'(0.922;0.992;1.000;1.000;1.000;1.000;0.983;
1.000)3'
coverage = 1.000
EC number :
EC 3.4.19.12
,
EC 6.-.-.-
InterPro :
IPR001578 : Peptidase C12, ubiquitin carboxyl-terminal hydrolase
GO :
0004843 : Molecular Function : ubiquitin-specific protease activity
0005622 : Cellular Component : intracellular
0006511 : Biological Process : ubiquitin-dependent protein catabolic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, extr 8, cyto_plas 8, nucl 3, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004176)
HIX0004176
HIT000604991 (
ENST00000504818
)
(Ubiquitin carboxyl-terminal hydrolase isozyme L1; UCH-L1; EC=3.4.19.12; EC=6.-.-.-; Neuron cytoplasmic protein 9.5; PGP 9.5; PGP9.5; Ubiquitin thioesterase L1; Precursor;)
genome : 41,258,950 - 41,263,940 (4,991)
query : 1 - 726 (726/726)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.4.19.12
,
EC 6.-.-.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 21.5, cyto_mito 12.5, plas 3, cyto 2.5, nucl 2,
extr_plas 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004176)
HIX0004176
HIT000608679 (
ENST00000508768
)
(Ubiquitin carboxyl-terminal hydrolase isozyme L1; UCH-L1; EC=3.4.19.12; EC=6.-.-.-; Neuron cytoplasmic protein 9.5; PGP 9.5; PGP9.5; Ubiquitin thioesterase L1; Precursor;)
genome : 41,258,957 - 41,270,256 (11,300)
query : 1 - 827 (827/827)
7 exons
identity = 0.992
5'(0.915;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.4.19.12
,
EC 6.-.-.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, extr 7, nucl 4, extr_plas 4, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004176)
HIX0004176
HIT000032743
(
BC006305
)
(Ubiquitin carboxyl-terminal hydrolase isozyme L1; UCH-L1; EC=3.4.19.12; EC=6.-.-.-; Neuron cytoplasmic protein 9.5; PGP 9.5; PGP9.5; Ubiquitin thioesterase L1; Precursor;)
genome : 41,258,958 - 41,270,441 (11,484)
query : 1 - 1,059 (1,059/1,101)
8 exons
identity = 0.993
5'(0.914;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
EC number :
EC 3.4.19.12
,
EC 6.-.-.-
InterPro :
IPR001578 : Peptidase C12, ubiquitin carboxyl-terminal hydrolase
GO :
0004843 : Molecular Function : ubiquitin-specific protease activity
0005622 : Cellular Component : intracellular
0006511 : Biological Process : ubiquitin-dependent protein catabolic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, extr 8, cyto_plas 8, nucl 3, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004176)
HIX0004176
HIT000612411 (
ENST00000512788
)
(Ubiquitin carboxyl-terminal hydrolase isozyme L1; UCH-L1; EC=3.4.19.12; EC=6.-.-.-; Neuron cytoplasmic protein 9.5; PGP 9.5; PGP9.5; Ubiquitin thioesterase L1; Precursor;)
genome : 41,258,962 - 41,270,142 (11,181)
query : 1 - 785 (785/785)
8 exons
identity = 0.991
5'(0.909;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
EC number :
EC 3.4.19.12
,
EC 6.-.-.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, extr 6, mito_pero 3.83333, nucl 3, mito 3,
E.R._mito 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004176)
HIX0004176
HIT000576872 (
ENST00000472501
)
(Ubiquitin carboxyl-terminal hydrolase isozyme L1; UCH-L1; EC=3.4.19.12; EC=6.-.-.-; Neuron cytoplasmic protein 9.5; PGP 9.5; PGP9.5; Ubiquitin thioesterase L1; Precursor;)
genome : 41,258,963 - 41,270,444 (11,482)
query : 1 - 1,550 (1,550/1,550)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
EC number :
EC 3.4.19.12
,
EC 6.-.-.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 10, extr 7.5, cyto_nucl 7.5, nucl 5, cyto_golg 5,
extr_plas 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004176)
HIX0004176
HIT000032221
(
BC005117
)
(Ubiquitin carboxyl-terminal hydrolase isozyme L1; UCH-L1; EC=3.4.19.12; EC=6.-.-.-; Neuron cytoplasmic protein 9.5; PGP 9.5; PGP9.5; Ubiquitin thioesterase L1; Precursor;)
genome : 41,258,970 - 41,270,446 (11,477)
query : 1 - 1,052 (1,052/1,072)
8 exons
identity = 0.993
5'(0.899;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
EC number :
EC 3.4.19.12
,
EC 6.-.-.-
InterPro :
IPR001578 : Peptidase C12, ubiquitin carboxyl-terminal hydrolase
GO :
0004843 : Molecular Function : ubiquitin-specific protease activity
0005622 : Cellular Component : intracellular
0006511 : Biological Process : ubiquitin-dependent protein catabolic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, extr 8, cyto_plas 8, nucl 3, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004176)
HIX0004176
HIT000328973
(
AB209038
)
(Conserved hypothetical protein.)
genome : 41,259,005 - 41,264,647 (5,643)
query : 1 - 5,644 (5,644/5,644)
1 exon
identity = 0.998
5'(0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, nucl 10, cyto_nucl 9, cyto 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004176)
HIX0004176
HIT000321064
(
X04741
)
(Ubiquitin carboxyl-terminal hydrolase isozyme L1; UCH-L1; EC=3.4.19.12; EC=6.-.-.-; Neuron cytoplasmic protein 9.5; PGP 9.5; PGP9.5; Ubiquitin thioesterase L1; Precursor;)
genome : 41,259,626 - 41,270,448 (10,823)
query : 44 - 1,014 (971/1,014)
7 exons
identity = 0.985
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.966)3'
coverage = 0.958
EC number :
EC 3.4.19.12
,
EC 6.-.-.-
InterPro :
IPR001578 : Peptidase C12, ubiquitin carboxyl-terminal hydrolase
GO :
0004843 : Molecular Function : ubiquitin-specific protease activity
0005622 : Cellular Component : intracellular
0006511 : Biological Process : ubiquitin-dependent protein catabolic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, extr 7, pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004176)
HIX0004176
HIT000614235 (
ENST00000514764
)
(Ubiquitin carboxyl-terminal hydrolase isozyme L1; UCH-L1; EC=3.4.19.12; EC=6.-.-.-; Neuron cytoplasmic protein 9.5; PGP 9.5; PGP9.5; Ubiquitin thioesterase L1; Precursor;)
genome : 41,262,656 - 41,270,446 (7,791)
query : 1 - 862 (862/862)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.4.19.12
,
EC 6.-.-.-
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, cyto 10.5, extr_plas 10.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004176)
HIX0004176
HIT000610348 (
ENST00000510566
)
(Ubiquitin carboxyl-terminal hydrolase isozyme L1; UCH-L1; EC=3.4.19.12; EC=6.-.-.-; Neuron cytoplasmic protein 9.5; PGP 9.5; PGP9.5; Ubiquitin thioesterase L1; Precursor;)
genome : 41,263,756 - 41,266,482 (2,727)
query : 1 - 540 (540/540)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
EC number :
EC 3.4.19.12
,
EC 6.-.-.-
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 21, E.R. 3, cyto 2.5, cyto_mito 2.5, nucl 2,
E.R._golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004176)
HIX0004176
HIT000011863
(
AK055249
)
(Ubiquitin carboxyl-terminal hydrolase isozyme L1; UCH-L1; EC=3.4.19.12; EC=6.-.-.-; Ubiquitin thioesterase L1; Precursor;)
genome : 41,267,837 - 41,270,450 (2,614)
query : 1 - 2,614 (2,614/2,618)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 0.998
EC number :
EC 3.4.19.12
,
EC 6.-.-.-
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 24, cyto 4, nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004176)
HIX0215983
HIT000611902 (
ENST00000512228
)
(Calponin/LIMCH1 family protein.)
genome : 41,362,824 - 41,601,138 (238,315)
query : 1 - 473 (473/473)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23.5, cyto_nucl 15, nucl 3.5, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215983)
HIX0120158
HIT000044877
(
AK125004
)
Representative transcript
(LIM and calponin homology domains-containing protein 1 isoform c.)
genome : 41,362,855 - 41,365,544 (2,690)
query : 1 - 2,690 (2,690/2,690)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, nucl 5, cyto 5, cyto_nucl 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0120158)
Ortholog candidate ( ->
Evola
)
Pan
sp. (Chimpanzee) : XM_001149447
HIX0205307
HIT000579774 (
ENST00000475538
)
(Conserved hypothetical protein.)
genome : 41,391,132 - 41,391,610 (479)
query : 1 - 479 (479/479)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto 5.5, mito 5, cyto_nucl 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0205307)
HIX0215983
HIT000615252 (
ENST00000515847
)
(Calponin homology domain containing protein.)
genome : 41,420,756 - 41,600,965 (180,210)
query : 1 - 490 (490/490)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 24, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215983)
HIX0024724
HIT000049783
(
AK130512
)
Representative transcript
(Conserved hypothetical protein.)
genome : 41,481,183 - 41,486,367 (5,185)
query : 1 - 2,586 (2,586/2,586)
2 exons
identity = 0.997
3'(0.984;0.997)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 16, cyto_nucl 10.5, cyto 8, E.R._mito 8,
mito_pero 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024724)
HIX0031650
HIT000090284
(
BC020895
)
Representative transcript
(Conserved hypothetical protein.)
genome : 41,535,772 - 41,537,180 (1,409)
query : 1 - 1,408 (1,408/1,436)
1 exon
identity = 0.998
5'(0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 22, cyto 18, cyto_plas 12.5, nucl 10.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0031650)
HIX0215936
HIT000262971
(
BC068200
)
Representative transcript
(Conserved hypothetical protein.)
genome : 41,614,919 - 41,622,311 (7,393)
query : 6 - 1,511 (1,506/1,542)
3 exons
identity = 0.999
5'(1.000;1.000;0.999)3'
coverage = 0.995
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215936)
HIX0215936
HIT000609319 (
ENST00000509454
)
(Conserved hypothetical protein.)
genome : 41,614,919 - 41,622,311 (7,393)
query : 1 - 1,506 (1,506/1,506)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215936)
HIX0215839
HIT000010505
(
AK027231
)
Representative transcript
(LIM and calponin homology domains-containing protein 1 isoform e.)
genome : 41,663,495 - 41,699,825 (36,331)
query : 1 - 1,854 (1,854/1,871)
13 exons
identity = 0.995
5'(1.000;1.000;0.991;1.000;0.975;0.989;1.000;
0.969;1.000;1.000;1.000;1.000;0.997)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22.5, cyto_nucl 15.5, cyto 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215839)
HIX0215839
HIT000497298
(
AK302674
)
(LIM and calponin homology domains-containing protein 1 isoform a.)
genome : 41,663,696 - 41,699,427 (35,732)
query : 1 - 1,703 (1,703/1,703)
13 exons
identity = 0.996
5'(0.985;1.000;1.000;0.976;1.000;1.000;1.000;
0.992;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001781 : Zinc finger, LIM-type
GO :
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215839)
HIX0215839
HIT000091891
(
BC029735
)
(Zinc finger, LIM-type domain containing protein.)
genome : 41,668,631 - 41,699,831 (31,201)
query : 1 - 1,610 (1,610/1,635)
11 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.998)3'
coverage = 0.985
InterPro :
IPR001781 : Zinc finger, LIM-type
GO :
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31.5, cyto_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215839)
HIX0120155
HIT000005201
(
AK021927
)
Representative transcript
(Conserved hypothetical protein.)
genome : 41,670,636 - 41,673,075 (2,440)
query : 1 - 2,440 (2,440/2,440)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 20, cyto_nucl 19.5, nucl 11
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0120155)
HIX0215839
HIT000005588
(
AK022314
)
(Conserved hypothetical protein.)
genome : 41,672,105 - 41,673,901 (1,797)
query : 1 - 1,798 (1,798/1,798)
1 exon
identity = 0.998
5'(0.998)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 12, cyto 11, mito 4.5, mito_pero 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215839)
HIX0205582
HIT000606539 (
ENST00000506475
)
(Hypothetical short protein.)
genome : 41,690,875 - 41,694,814 (3,940)
query : 1 - 435 (435/435)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 27, nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0205582)
HIX0215839
HIT000430462
(
AK311596
)
(Hypothetical short protein.)
genome : 41,694,972 - 41,699,912 (4,941)
query : 1 - 1,130 (1,130/1,130)
2 exons
identity = 0.999
5'(1.000;0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, mito 11, pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215839)
HIX0215839
HIT000615192 (
ENST00000515785
)
(Hypothetical short protein.)
genome : 41,694,972 - 41,699,912 (4,941)
query : 1 - 1,129 (1,129/1,129)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, mito 11, pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215839)
HIX0215839
HIT000605816 (
ENST00000505705
)
(Hypothetical short protein.)
genome : 41,695,213 - 41,700,496 (5,284)
query : 1 - 437 (437/437)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215839)
HIX0215839
HIT000010089
(
AK026815
)
(Hypothetical protein.)
genome : 41,699,859 - 41,702,060 (2,202)
query : 3 - 2,204 (2,202/2,219)
1 exon
identity = 0.997
5'(0.997)3'
coverage = 0.999
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 23.5, cyto_mito 13, extr 2, nucl 2, mito 1.5,
extr_plas 1.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215839)
HIX0215839
HIT000024734
(
AL117572
)
(Hypothetical short protein.)
genome : 41,700,818 - 41,702,060 (1,243)
query : 4 - 1,246 (1,243/1,266)
1 exon
identity = 0.998
5'(0.998)3'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, cyto_nucl 11.5, extr 7, mito 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215839)
HIX0205595
HIT000606845 (
ENST00000506803
)
(Conserved hypothetical protein.)
genome : 41,724,555 - 41,725,529 (975)
query : 1 - 618 (618/618)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 27.5, extr_plas 15
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0205595)
HIX0004178
HIT000200710 (
NM_003924
)
(Paired mesoderm homeobox protein 2B; Neuroblastoma Phox; NBPhox; PHOX2B homeodomain protein; Paired-like homeobox 2B;)
genome : 41,746,099 - 41,750,987 (4,889)
query : 1 - 3,030 (3,030/3,033)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31.5, cyto_nucl 16.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004178)
HIX0004178
HIT000103987 (
ENST00000226382
)
(Paired mesoderm homeobox protein 2B; Neuroblastoma Phox; NBPhox; PHOX2B homeodomain protein; Paired-like homeobox 2B;)
genome : 41,746,099 - 41,750,987 (4,889)
query : 1 - 3,030 (3,030/3,030)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31.5, cyto_nucl 16.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004178)
HIX0004178
HIT000101772
(
D82344
)
(Paired mesoderm homeobox protein 2B; Neuroblastoma Phox; NBPhox; PHOX2B homeodomain protein; Paired-like homeobox 2B;)
genome : 41,746,100 - 41,750,987 (4,888)
query : 1 - 3,029 (3,029/3,029)
3 exons
identity = 0.998
3'(0.998;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR017970 : Homeobox, conserved site
GO :
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
0043565 : Molecular Function : sequence-specific DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31.5, cyto_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004178)
HIX0120072
HIT000429948
(
AK311082
)
Representative transcript
(Paired mesoderm homeobox protein 2B; Neuroblastoma Phox; NBPhox; PHOX2B homeodomain protein; Paired-like homeobox 2B;)
genome : 41,746,932 - 41,750,742 (3,811)
query : 1 - 1,041 (1,041/1,041)
2 exons
identity = 0.995
5'(0.999;0.947)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 24.5, extr_plas 13, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0120072)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : XR_011730
HIX0004178
HIT000037869
(
BC017199
)
Representative transcript
(Paired mesoderm homeobox protein 2B; Neuroblastoma Phox; NBPhox; PHOX2B homeodomain protein; Paired-like homeobox 2B;)
genome : 41,747,385 - 41,750,723 (3,339)
query : 1 - 1,480 (1,480/1,497)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR017970 : Homeobox, conserved site
GO :
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
0043565 : Molecular Function : sequence-specific DNA binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31.5, cyto_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004178)
Ortholog candidate ( ->
Evola
)
Danio
sp. (Zebrafish) : AY846871
Mus
sp. (Mouse) : BC079610
Danio
sp. (Zebrafish) : ENSDART00000106333
Monodelphis
sp. (Opossum) : ENSMODT00000026194
Oryzias
sp. (Medaka) : ENSORLT00000014087
Pongo
sp. (Orangutan) : ENSPPYT00000017084
Rattus
sp. (Rat) : ENSRNOT00000003136
Tetraodon
sp. (Tetraodon) : GSTENT00024455001
Takifugu
sp. (Fugu) : SINFRUT00000142914
Macaca
sp. (Macaque) : XM_001098028
Pan
sp. (Chimpanzee) : XM_001149518
Bos
sp. (Cow) : XM_001252230
Equus
sp. (Horse) : XM_001917254
Canis
sp. (Dog) : XM_847747
HIX0004178
HIT000610220 (
ENST00000510424
)
(Paired mesoderm homeobox protein 2B; Neuroblastoma Phox; NBPhox; PHOX2B homeodomain protein; Paired-like homeobox 2B;)
genome : 41,748,050 - 41,749,724 (1,675)
query : 1 - 538 (538/538)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004178)
HIX0205670
HIT000607995 (
ENST00000508038
)
(Conserved hypothetical protein.)
genome : 41,750,310 - 41,826,136 (75,827)
query : 1 - 907 (907/907)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto 11
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0205670)
HIX0205811
HIT000610381 (
ENST00000510602
)
(Hypothetical short protein.)
genome : 41,752,362 - 41,759,358 (6,997)
query : 1 - 561 (561/561)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, cyto_nucl 14.5, nucl 9, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0205811)
HIX0205650
HIT000607755 (
ENST00000507778
)
(Conserved hypothetical protein.)
genome : 41,844,171 - 41,845,967 (1,797)
query : 1 - 552 (552/552)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, nucl 10, cyto_nucl 7.5, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0205650)
HIX0031439
HIT000605040 (
ENST00000504870
)
(Conserved hypothetical protein.)
genome : 41,878,498 - 41,884,628 (6,131)
query : 1 - 632 (632/632)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, mito 12, mito_nucl 9, nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0031439)
HIX0031439
HIT000091055
(
BC025350
)
Representative transcript
(Hypothetical short protein.)
genome : 41,881,540 - 41,884,569 (3,030)
query : 1 - 1,364 (1,364/1,381)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, cyto_nucl 7.5, cyto 6.5, nucl 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0031439)
HIX0031439
HIT000602094 (
ENST00000499082
)
(Hypothetical short protein.)
genome : 41,881,538 - 41,884,587 (3,050)
query : 1 - 1,384 (1,384/1,384)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, cyto_nucl 7.5, cyto 6.5, nucl 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0031439)
HIX0031439
HIT000602064 (
ENST00000498940
)
(Hypothetical short protein.)
genome : 41,881,564 - 41,883,860 (2,297)
query : 1 - 1,625 (1,625/1,625)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, cyto_nucl 7.5, cyto 6.5, nucl 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0031439)
HIX0205820
HIT000610527 (
ENST00000510772
)
(Hypothetical short protein.)
genome : 41,885,077 - 41,896,596 (11,520)
query : 1 - 825 (825/825)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, cyto 4, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0205820)
HIX0205439
HIT000603953 (
ENST00000503681
)
(Conserved hypothetical protein.)
genome : 41,926,197 - 41,926,397 (201)
query : 1 - 201 (201/201)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, extr 10, mito 4, nucl 2, pero 2, E.R._mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0205439)
HIX0004179
HIT000206959 (
NM_018126
)
(Transmembrane protein 33; Protein DB83;)
genome : 41,937,137 - 41,962,824 (25,688)
query : 1 - 7,717 (7,717/7,717)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004179)
HIX0004179
HIT000605147 (
ENST00000504986
)
(Transmembrane protein 33; Protein DB83;)
genome : 41,937,137 - 41,962,589 (25,453)
query : 1 - 7,482 (7,482/7,482)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004179)
HIX0004179
HIT000109319 (
ENST00000264452
)
(Transmembrane protein 33; Protein DB83;)
genome : 41,937,146 - 41,956,874 (19,729)
query : 1 - 1,570 (1,570/1,570)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 11, plas 5, nucl 5, extr 4, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004179)
HIX0004179
HIT000613255 (
ENST00000513702
)
(Transmembrane protein 33; Protein DB83;)
genome : 41,937,146 - 41,956,412 (19,267)
query : 1 - 1,092 (1,092/1,092)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004179)
HIX0004179
HIT000608377 (
ENST00000508448
)
(Transmembrane protein 33.)
genome : 41,937,146 - 41,956,139 (18,994)
query : 1 - 867 (867/867)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004179)
HIX0004179
HIT000006336
(
AK023062
)
(Transmembrane protein 33; Protein DB83;)
genome : 41,937,157 - 41,957,558 (20,402)
query : 1 - 2,431 (2,431/2,431)
7 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR005344 : Uncharacterised protein family UPF0121
GO :
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004179)
HIX0004179
HIT000434936
(
AY659966
)
(Transmembrane protein 33; Protein DB83;)
genome : 41,937,169 - 41,962,583 (25,415)
query : 1 - 6,757 (6,757/6,777)
8 exons
identity = 0.991
5'(0.997;1.000;1.000;1.000;1.000;1.000;0.991;
0.986)3'
coverage = 1.000
InterPro :
IPR005344 : Uncharacterised protein family UPF0121
GO :
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004179)
HIX0004179
HIT000124090 (
ENST00000325094
)
(Transmembrane protein 33; Protein DB83;)
genome : 41,937,169 - 41,962,580 (25,412)
query : 1 - 6,743 (6,743/6,743)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.999)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004179)
HIX0004179
HIT000003861
(
AK001387
)
(Transmembrane protein 33; Protein DB83;)
genome : 41,937,169 - 41,957,823 (20,655)
query : 1 - 2,684 (2,684/2,684)
7 exons
identity = 0.999
5'(0.997;1.000;1.000;1.000;1.000;1.000;0.998)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004179)
HIX0004179
HIT000019045
(
AK094190
)
Representative transcript
(Transmembrane protein 33; Protein DB83;)
genome : 41,937,169 - 41,957,823 (20,655)
query : 1 - 2,629 (2,629/2,629)
8 exons
identity = 0.997
5'(1.000;0.958;1.000;1.000;1.000;1.000;1.000;
0.999)3'
coverage = 1.000
InterPro :
IPR005344 : Uncharacterised protein family UPF0121
GO :
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004179)
Ortholog candidate ( ->
Evola
)
Rattus
sp. (Rat) : AB006135
Mus
sp. (Mouse) : AK017281
Danio
sp. (Zebrafish) : BC044544
Bos
sp. (Cow) : BC114131
Tetraodon
sp. (Tetraodon) : CR731888
Equus
sp. (Horse) : ENSECAT00000012179
Pongo
sp. (Orangutan) : ENSPPYT00000017085
Takifugu
sp. (Fugu) : SINFRUT00000142911
Macaca
sp. (Macaque) : XM_001098225
Pan
sp. (Chimpanzee) : XM_001149937
Bos
sp. (Cow) : XM_001250362
Monodelphis
sp. (Opossum) : XM_001365239
Gallus
sp. (Chicken) : XM_420732
Canis
sp. (Dog) : XM_847767
HIX0004179
HIT000427367
(
AK308501
)
(Transmembrane protein 33; Protein DB83;)
genome : 41,937,169 - 41,956,874 (19,706)
query : 1 - 1,547 (1,547/1,547)
6 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR005344 : Uncharacterised protein family UPF0121
GO :
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 11, plas 5, nucl 5, extr 4, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004179)
HIX0004179
HIT000610184 (
ENST00000510383
)
(Transmembrane protein 33.)
genome : 41,937,401 - 41,946,219 (8,819)
query : 1 - 697 (697/697)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 11, plas 5, nucl 5, extr 4, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004179)
HIX0004179
HIT000030022
(
BC000948
)
(Transmembrane protein 33; Protein DB83;)
genome : 41,937,407 - 41,956,814 (19,408)
query : 1 - 1,437 (1,437/1,453)
7 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.996)3'
coverage = 1.000
InterPro :
IPR005344 : Uncharacterised protein family UPF0121
GO :
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004179)
HIX0004179
HIT000606836 (
ENST00000506794
)
(Transmembrane protein 33.)
genome : 41,937,461 - 41,951,401 (13,941)
query : 1 - 574 (574/574)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 9, nucl 7, plas 6, pero 4, extr_plas 4,
mito_nucl 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004179)
HIX0004179
HIT000268110
(
CR457260
)
(Transmembrane protein 33; Protein DB83;)
genome : 41,937,502 - 41,956,215 (18,714)
query : 1 - 743 (743/744)
7 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.992)3'
coverage = 0.999
InterPro :
IPR005344 : Uncharacterised protein family UPF0121
GO :
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004179)
HIX0004179
HIT000613119 (
ENST00000513558
)
(Transmembrane protein 33.)
genome : 41,941,272 - 41,956,038 (14,767)
query : 1 - 677 (677/677)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 21, plas 6, nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004179)
HIX0004179
HIT000007861
(
AK024587
)
(Conserved hypothetical protein.)
genome : 41,956,400 - 41,957,824 (1,425)
query : 1 - 1,426 (1,426/1,442)
1 exon
identity = 0.996
5'(0.996)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 19, cyto 7.5, cyto_nucl 5.5, nucl 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004179)
HIX0216021
HIT000243000
(
AF403224
)
Representative transcript
(Conserved hypothetical protein.)
genome : 41,957,315 - 41,957,505 (191)
query : 1 - 191 (191/191)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto 8, mito 8, cyto_mito 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0216021)
HIX0004179
HIT000088387
(
BC014384
)
(Hypothetical short protein.)
genome : 41,961,159 - 41,962,573 (1,415)
query : 4 - 1,418 (1,415/1,449)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 0.996
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, mito 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004179)
HIX0004179
HIT000013588
(
AK056974
)
(Hypothetical short protein.)
genome : 41,961,538 - 41,962,575 (1,038)
query : 1 - 1,038 (1,038/1,038)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 26, cyto 3.5, cyto_nucl 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004179)
HIX0024569
HIT000365910 (
NM_001029955
)
(DDB1- and CUL4-associated factor 4-like protein 1; WD repeat-containing protein 21B;)
genome : 41,983,713 - 41,988,484 (4,772)
query : 1 - 4,772 (4,772/4,772)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 16, cyto 12.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024569)
HIX0024569
HIT000128190 (
ENST00000333141
)
(DDB1- and CUL4-associated factor 4-like protein 1; WD repeat-containing protein 21B;)
genome : 41,983,713 - 41,988,476 (4,764)
query : 1 - 4,764 (4,764/4,764)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 16, cyto 12.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024569)
HIX0024569
HIT000259227
(
BC052943
)
(Conserved hypothetical protein.)
genome : 41,983,773 - 41,988,484 (4,712)
query : 1 - 4,714 (4,714/4,731)
1 exon
identity = 0.997
5'(0.997)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024569)
HIX0024569
HIT000337672
(
BC104224
)
(DDB1- and CUL4-associated factor 4-like protein 1; WD repeat-containing protein 21B;)
genome : 41,983,791 - 41,985,120 (1,330)
query : 1 - 1,330 (1,330/1,330)
1 exon
identity = 0.998
5'(0.998)3'
coverage = 1.000
InterPro :
IPR001680 : WD40 repeat
IPR017986 : WD40-repeat-containing domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 16, cyto 12.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024569)
HIX0024569
HIT000337673
(
BC104225
)
(DDB1- and CUL4-associated factor 4-like protein 1; WD repeat-containing protein 21B;)
genome : 41,983,791 - 41,985,120 (1,330)
query : 1 - 1,330 (1,330/1,330)
1 exon
identity = 0.998
5'(0.998)3'
coverage = 1.000
InterPro :
IPR001680 : WD40 repeat
IPR017986 : WD40-repeat-containing domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 16, cyto 12.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024569)
HIX0024569
HIT000042787
(
AK122914
)
Representative transcript
(DDB1- and CUL4-associated factor 4-like protein 1; WD repeat-containing protein 21B;)
genome : 41,983,795 - 41,987,233 (3,439)
query : 1 - 3,442 (3,442/3,442)
1 exon
identity = 0.997
5'(0.997)3'
coverage = 1.000
InterPro :
IPR001680 : WD40 repeat
IPR017986 : WD40-repeat-containing domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 16, cyto 12.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024569)
Ortholog candidate ( ->
Evola
)
Tetraodon
sp. (Tetraodon) : CR662629
Oryzias
sp. (Medaka) : ENSORLT00000022603
Pongo
sp. (Orangutan) : ENSPPYT00000017086
Takifugu
sp. (Fugu) : SINFRUT00000135923
Macaca
sp. (Macaque) : XM_001096941
Pan
sp. (Chimpanzee) : XM_526564
HIX0024569
HIT000093644
(
BC035027
)
(Conserved hypothetical protein.)
genome : 41,983,840 - 41,987,074 (3,235)
query : 1 - 3,235 (3,235/3,250)
1 exon
identity = 0.996
5'(0.996)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024569)
HIX0216082
HIT000610253 (
ENST00000510460
)
(XPA C- terminal domain containing protein.)
genome : 41,992,544 - 42,022,792 (30,249)
query : 1 - 819 (819/819)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 27, golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0216082)
HIX0215914
HIT000090723
(
BC022981
)
Representative transcript
(Cation efflux protein family protein.)
genome : 42,024,884 - 42,089,538 (64,655)
query : 1 - 2,639 (2,639/2,655)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.991;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR002524 : Cation efflux protein
IPR009061 : DNA binding domain, putative
IPR022656 : XPA C- terminal
IPR027469 : Cation efflux protein transmembrane domain
GO :
0006812 : Biological Process : cation transport
0008324 : Molecular Function : cation transmembrane transporter activity
0016021 : Cellular Component : integral component of membrane
0055085 : Biological Process : transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215914)
HIX0205770
HIT000609614 (
ENST00000509767
)
(Conserved hypothetical protein.)
genome : 42,031,226 - 42,032,140 (915)
query : 1 - 915 (915/915)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0205770)
HIX0215914
HIT000609536 (
ENST00000509683
)
(Conserved hypothetical protein.)
genome : 42,065,051 - 42,080,868 (15,818)
query : 1 - 1,078 (1,078/1,078)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, cyto_nucl 13, extr 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215914)
HIX0215914
HIT000605648 (
ENST00000505523
)
(Cation efflux protein family protein.)
genome : 42,072,206 - 42,088,393 (16,188)
query : 1 - 809 (809/809)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 15, E.R. 8, plas 3, mito 2, cyto_plas 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215914)
HIX0017685
HIT000023427
(
AK098597
)
Representative transcript
(Conserved hypothetical protein.)
genome : 42,097,864 - 42,101,378 (3,515)
query : 1 - 1,683 (1,683/1,683)
2 exons
identity = 0.998
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, cyto_nucl 6, nucl 4.5, cyto 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0017685)
HIX0216155
HIT000214773 (
NM_173075
)
(WW domain containing protein.)
genome : 40,812,044 - 41,216,635 (404,592)
query : 1 - 8,906 (8,906/8,935)
17 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24.5, cyto_nucl 16.5, cyto 5.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0216155)
HIX0216155
HIT000654230 (
NM_001166050
)
(WW domain containing protein.)
genome : 40,812,044 - 41,216,635 (404,592)
query : 1 - 8,972 (8,972/9,001)
18 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.940;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24.5, cyto_nucl 16.5, cyto 5.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0216155)
HIX0216155
HIT000657645 (
NM_004307
)
(WW domain containing protein.)
genome : 40,812,044 - 41,216,635 (404,592)
query : 1 - 8,975 (8,975/9,004)
18 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.940;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24.5, cyto_nucl 16.5, cyto 5.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0216155)
HIX0216155
HIT000114357 (
ENST00000295974
)
(WW domain containing protein.)
genome : 40,812,044 - 41,216,635 (404,592)
query : 1 - 8,972 (8,972/8,972)
18 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.940;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24.5, cyto_nucl 16.5, cyto 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0216155)
HIX0216155
HIT000050929
(
BC027946
)
(Amyloid beta A4 precursor protein-binding family B member 2 isoform d.)
genome : 40,816,624 - 41,216,475 (399,852)
query : 1 - 4,166 (4,166/4,265)
17 exons
identity = 0.999
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.998;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001202 : WW domain
IPR006020 : PTB/PI domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24.5, cyto_nucl 16.5, cyto 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0216155)
HIX0216155
HIT000612735 (
ENST00000513140
)
(WW domain containing protein.)
genome : 40,816,624 - 41,216,475 (399,852)
query : 1 - 4,166 (4,166/4,166)
17 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24.5, cyto_nucl 16.5, cyto 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0216155)
HIX0216155
HIT000266206
(
BC088372
)
(Amyloid beta A4 precursor protein-binding family B member 2; Protein Fe65-like 1;)
genome : 40,817,330 - 40,936,535 (119,206)
query : 10 - 1,877 (1,868/1,939)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 0.995
InterPro :
IPR006020 : PTB/PI domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20.5, cyto_nucl 15, nucl 6.5, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0216155)
HIX0216155
HIT000613169 (
ENST00000513611
)
(WW domain containing protein.)
genome : 40,817,330 - 41,016,402 (199,073)
query : 1 - 2,964 (2,964/2,964)
12 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27.5, cyto_nucl 16
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0216155)
HIX0216155
HIT000608515 (
ENST00000508593
)
(WW domain containing protein.)
genome : 40,817,341 - 41,216,549 (399,209)
query : 1 - 3,592 (3,592/3,592)
18 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.940;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24.5, cyto_nucl 16.5, cyto 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0216155)
HIX0216155
HIT000220711
(
U62325
)
Representative transcript
(WW domain containing protein.)
genome : 40,817,407 - 41,016,357 (198,951)
query : 6 - 2,897 (2,892/2,912)
13 exons
identity = 0.980
3'(0.999;0.994;1.000;1.000;1.000;1.000;0.984;
1.000;1.000;1.000;0.940;1.000;0.936)5'
coverage = 0.998
InterPro :
IPR001202 : WW domain
IPR006020 : PTB/PI domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14.5, cyto_nucl 11, mito 9, cyto 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0216155)
HIX0216155
HIT000498871
(
AK304247
)
(Amyloid beta A4 precursor protein-binding family B member 2; Protein Fe65-like 1;)
genome : 40,817,408 - 41,216,506 (399,099)
query : 1 - 3,479 (3,479/3,479)
18 exons
identity = 0.997
3'(0.999;0.994;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.940;1.000;0.996;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR001202 : WW domain
IPR006020 : PTB/PI domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24.5, cyto_nucl 16.5, cyto 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0216155)
HIX0216155
HIT000606421 (
ENST00000506352
)
(WW domain containing protein.)
genome : 40,817,634 - 41,216,632 (398,999)
query : 1 - 3,316 (3,316/3,316)
17 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24.5, cyto_nucl 16.5, cyto 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0216155)
HIX0216155
HIT000422635
(
AK289838
)
(Amyloid beta A4 precursor protein-binding family B member 2; Protein Fe65-like 1;)
genome : 40,817,779 - 40,947,093 (129,315)
query : 10 - 1,724 (1,715/1,724)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 0.995
InterPro :
IPR006020 : PTB/PI domain
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20.5, cyto_nucl 15, nucl 6.5, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0216155)
HIX0216155
HIT000612158 (
ENST00000512510
)
(PTB/PI domain containing protein.)
genome : 40,824,000 - 40,892,442 (68,443)
query : 1 - 539 (539/539)
6 exons
identity = 0.994
3'(1.000;1.000;1.000;1.000;1.000;0.956)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 12, mito 7, nucl 3.5,
E.R._mito 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0216155)
HIX0216155
HIT000607803 (
ENST00000507831
)
(PTB/PI domain containing protein.)
genome : 40,825,683 - 40,892,931 (67,249)
query : 1 - 575 (575/575)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, cyto_nucl 11, extr 5, cysk 4, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0216155)
HIX0216155
HIT000613059 (
ENST00000513493
)
(PTB/PI domain containing protein.)
genome : 40,827,904 - 40,892,510 (64,607)
query : 7 - 426 (420/426)
4 exons
identity = 0.993
3'(1.000;1.000;1.000;0.978)5'
coverage = 0.986
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21.5, cyto_nucl 13, extr 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0216155)
HIX0216155
HIT000613615 (
ENST00000514094
)
(PTB/PI domain containing protein.)
genome : 40,828,803 - 40,936,504 (107,702)
query : 1 - 856 (856/856)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, extr 10, nucl 3, mito 1, lyso 1, cysk 1,
golg 1
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0216155)
HIX0004177
HIT000306891
(
CR936610
)
(LIM and calponin homology domains-containing protein 1 isoform d.)
genome : 41,361,624 - 41,701,003 (339,380)
query : 2 - 5,112 (5,111/5,129)
26 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.994;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR001781 : Zinc finger, LIM-type
GO :
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004177)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : BC075634
Danio
sp. (Zebrafish) : BC159250
Gallus
sp. (Chicken) : BX930762
Tetraodon
sp. (Tetraodon) : CR729483
Canis
sp. (Dog) : ENSCAFT00000002810
Monodelphis
sp. (Opossum) : ENSMODT00000026193
Oryzias
sp. (Medaka) : ENSORLT00000009820
Pongo
sp. (Orangutan) : ENSPPYT00000017083
Rattus
sp. (Rat) : XM_001077838
Pan
sp. (Chimpanzee) : XM_001148596
Equus
sp. (Horse) : XM_001494623
Macaca
sp. (Macaque) : XR_011730
Bos
sp. (Cow) : XR_027969
HIX0004177
HIT000612627 (
ENST00000513024
)
(LIM and calponin homology domains-containing protein 1 isoform d.)
genome : 41,361,624 - 41,701,020 (339,397)
query : 1 - 5,129 (5,129/5,129)
26 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004177)
HIX0004177
HIT000259325
(
BC053639
)
(LIM and calponin homology domains-containing protein 1 isoform d.)
genome : 41,362,648 - 41,621,949 (259,302)
query : 1 - 1,566 (1,566/1,614)
7 exons
identity = 0.999
5'(0.997;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004177)
HIX0004177
HIT000609493 (
ENST00000509638
)
(LIM and calponin homology domains-containing protein 1 isoform d.)
genome : 41,362,648 - 41,621,953 (259,306)
query : 1 - 1,570 (1,570/1,570)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004177)
HIX0004177
HIT000306827
(
CR933645
)
(LIM and calponin homology domains-containing protein 1 isoform d.)
genome : 41,362,802 - 41,701,009 (338,208)
query : 2 - 5,036 (5,035/5,057)
26 exons
identity = 0.999
5'(0.987;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.998;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.990;0.998)3'
coverage = 0.999
InterPro :
IPR001715 : Calponin homology domain
IPR001781 : Zinc finger, LIM-type
IPR001997 : Calponin/LIMCH1
IPR003096 : Smooth muscle protein/calponin
GO :
0003779 : Molecular Function : actin binding
0005515 : Molecular Function : protein binding
0008270 : Molecular Function : zinc ion binding
0031032 : Biological Process : actomyosin structure organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004177)
HIX0004177
HIT000306937
(
CR936664
)
(LIM and calponin homology domains-containing protein 1 isoform d.)
genome : 41,362,802 - 41,701,011 (338,210)
query : 2 - 5,038 (5,037/5,056)
26 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;0.991;1.000;
1.000;1.000;1.000;0.994;1.000;0.995;1.000;
1.000;1.000;0.976;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR001715 : Calponin homology domain
IPR001781 : Zinc finger, LIM-type
IPR001997 : Calponin/LIMCH1
IPR003096 : Smooth muscle protein/calponin
GO :
0003779 : Molecular Function : actin binding
0005515 : Molecular Function : protein binding
0008270 : Molecular Function : zinc ion binding
0031032 : Biological Process : actomyosin structure organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004177)
HIX0004177
HIT000608428 (
ENST00000508501
)
(LIM and calponin homology domains-containing protein 1 isoform c.)
genome : 41,362,802 - 41,701,029 (338,228)
query : 1 - 5,054 (5,054/5,054)
26 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004177)
HIX0004177
HIT000612557 (
ENST00000512946
)
(LIM and calponin homology domains-containing protein 1;)
genome : 41,362,802 - 41,701,029 (338,228)
query : 1 - 5,057 (5,057/5,057)
26 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004177)
HIX0004177
HIT000317166 (
NM_014988
)
(LIM and calponin homology domains-containing protein 1;)
genome : 41,362,804 - 41,702,060 (339,257)
query : 1 - 6,164 (6,164/6,182)
27 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004177)
HIX0004177
HIT000485864 (
NM_001112717
)
(LIM and calponin homology domains-containing protein 1;)
genome : 41,362,804 - 41,702,060 (339,257)
query : 1 - 6,086 (6,086/6,104)
26 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004177)
HIX0004177
HIT000485865 (
NM_001112718
)
(LIM and calponin homology domains-containing protein 1 isoform c.)
genome : 41,362,804 - 41,702,060 (339,257)
query : 1 - 6,083 (6,083/6,101)
26 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004177)
HIX0004177
HIT000119912 (
ENST00000313860
)
(LIM and calponin homology domains-containing protein 1;)
genome : 41,362,804 - 41,702,061 (339,258)
query : 1 - 6,165 (6,165/6,165)
27 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004177)
HIX0004177
HIT000000819
(
AB029025
)
(LIM and calponin homology domains-containing protein 1;)
genome : 41,362,804 - 41,701,010 (338,207)
query : 1 - 5,113 (5,113/5,113)
27 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.976;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004177)
HIX0004177
HIT000306931
(
CR936658
)
(LIM and calponin homology domains-containing protein 1 isoform e.)
genome : 41,362,824 - 41,701,003 (338,180)
query : 2 - 4,780 (4,779/4,796)
23 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;0.991;1.000;
1.000;1.000;0.992;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.999)3'
coverage = 1.000
InterPro :
IPR001781 : Zinc finger, LIM-type
GO :
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004177)
HIX0004177
HIT000612271 (
ENST00000512632
)
(LIM and calponin homology domains-containing protein 1;)
genome : 41,362,824 - 41,701,017 (338,194)
query : 1 - 4,792 (4,792/4,792)
23 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004177)
HIX0004177
HIT000613705 (
ENST00000514190
)
(LIM and calponin homology domains-containing protein 1 isoform e.)
genome : 41,362,826 - 41,615,574 (252,749)
query : 1 - 540 (540/540)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17, extr 8, cyto 3, golg 2, cyto_pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004177)
HIX0004177
HIT000306883
(
CR936601
)
(LIM and calponin homology domains-containing protein 1 isoform d.)
genome : 41,362,832 - 41,701,016 (338,185)
query : 2 - 5,050 (5,049/5,070)
26 exons
identity = 0.999
5'(0.992;1.000;1.000;1.000;1.000;1.000;0.995;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.999)3'
coverage = 0.999
InterPro :
IPR001715 : Calponin homology domain
IPR001781 : Zinc finger, LIM-type
IPR001997 : Calponin/LIMCH1
IPR003096 : Smooth muscle protein/calponin
GO :
0003779 : Molecular Function : actin binding
0005515 : Molecular Function : protein binding
0008270 : Molecular Function : zinc ion binding
0031032 : Biological Process : actomyosin structure organization
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004177)
HIX0004177
HIT000612441 (
ENST00000512820
)
(LIM and calponin homology domains-containing protein 1 isoform b.)
genome : 41,362,832 - 41,701,037 (338,206)
query : 1 - 5,071 (5,071/5,071)
26 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004177)
HIX0004177
HIT000306934
(
CR936661
)
(LIM and calponin homology domains-containing protein 1 isoform a.)
genome : 41,387,820 - 41,699,831 (312,012)
query : 1 - 3,760 (3,760/3,789)
25 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.996;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.976;1.000;1.000;1.000;1.000;1.000;
1.000;0.991;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001781 : Zinc finger, LIM-type
GO :
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004177)
HIX0004177
HIT000611145 (
ENST00000511424
)
(LIM and calponin homology domains-containing protein 1 isoform c.)
genome : 41,387,820 - 41,615,551 (227,732)
query : 1 - 551 (551/551)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, cyto_nucl 12, extr 9, nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004177)
HIX0004177
HIT000335187
(
BC095394
)
(LIM and calponin homology domains-containing protein 1 isoform d.)
genome : 41,387,996 - 41,699,765 (311,770)
query : 1 - 2,091 (2,091/2,106)
15 exons
identity = 0.997
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.975;1.000;1.000;1.000;1.000;1.000;1.000;
0.998)3'
coverage = 1.000
InterPro :
IPR001781 : Zinc finger, LIM-type
GO :
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004177)
HIX0004177
HIT000544559 (
ENST00000446625
)
(LIM and calponin homology domains-containing protein 1 isoform c.)
genome : 41,387,996 - 41,621,379 (233,384)
query : 1 - 789 (789/789)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 13, cyto 8.5, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004177)
HIX0004177
HIT000603368 (
ENST00000503057
)
(LIM and calponin homology domains-containing protein 1 isoform e.)
genome : 41,540,174 - 41,699,831 (159,658)
query : 1 - 5,467 (5,467/5,467)
32 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004177)
HIX0004177
HIT000050819
(
BC023546
)
(LIM and calponin homology domains-containing protein 1 isoform d.)
genome : 41,540,191 - 41,699,560 (159,370)
query : 1 - 3,438 (3,438/3,458)
23 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.976;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001781 : Zinc finger, LIM-type
GO :
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004177)
HIX0004177
HIT000611211 (
ENST00000511496
)
(LIM and calponin homology domains-containing protein 1 isoform d.)
genome : 41,540,191 - 41,699,561 (159,371)
query : 1 - 3,439 (3,439/3,439)
23 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004177)
HIX0004177
HIT000026874
(
AL831962
)
Representative transcript
(LIM and calponin homology domains-containing protein 1 isoform e.)
genome : 41,540,321 - 41,699,831 (159,511)
query : 2 - 5,320 (5,319/5,364)
32 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.996;
1.000;1.000;0.997;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.995;1.000;1.000;1.000;
0.927;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.990;0.998)3'
coverage = 1.000
InterPro :
IPR001781 : Zinc finger, LIM-type
GO :
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004177)
HIX0004177
HIT000428712
(
AK309846
)
(LIM and calponin homology domains-containing protein 1 isoform e.)
genome : 41,614,356 - 41,699,624 (85,269)
query : 5 - 3,339 (3,335/3,339)
20 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;0.998;1.000;
0.989;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.996)3'
coverage = 0.999
InterPro :
IPR001781 : Zinc finger, LIM-type
GO :
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004177)
HIX0004177
HIT000613617 (
ENST00000514096
)
(LIM and calponin homology domains-containing protein 1 isoform e.)
genome : 41,614,356 - 41,699,831 (85,476)
query : 1 - 3,543 (3,543/3,543)
20 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004177)
HIX0004177
HIT000609151 (
ENST00000509277
)
(LIM and calponin homology domains-containing protein 1 isoform e.)
genome : 41,614,726 - 41,699,559 (84,834)
query : 1 - 3,474 (3,474/3,474)
21 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004177)
HIX0004177
HIT000489398
(
AK294774
)
(LIM and calponin homology domains-containing protein 1 isoform d.)
genome : 41,614,726 - 41,699,346 (84,621)
query : 1 - 3,261 (3,261/3,261)
21 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;0.998;1.000;
1.000;1.000;1.000;0.951;1.000;1.000;1.000;
1.000;1.000;0.992;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001781 : Zinc finger, LIM-type
GO :
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004177)
HIX0004177
HIT000054700
(
BX537916
)
(LIM and calponin homology domains-containing protein 1 isoform e.)
genome : 41,614,919 - 41,702,060 (87,142)
query : 1 - 5,704 (5,704/5,722)
20 exons
identity = 0.998
5'(1.000;0.995;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.976;1.000;1.000;1.000;
1.000;1.000;1.000;0.991;1.000;0.997)3'
coverage = 1.000
InterPro :
IPR001781 : Zinc finger, LIM-type
GO :
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004177)
HIX0004177
HIT000485866 (
NM_001112719
)
(LIM and calponin homology domains-containing protein 1 isoform d.)
genome : 41,614,919 - 41,702,060 (87,142)
query : 1 - 5,740 (5,740/5,758)
21 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004177)
HIX0004177
HIT000485867 (
NM_001112720
)
(LIM and calponin homology domains-containing protein 1 isoform e.)
genome : 41,614,919 - 41,702,060 (87,142)
query : 1 - 5,704 (5,704/5,722)
20 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004177)
HIX0004177
HIT000306248
(
CR749205
)
(LIM and calponin homology domains-containing protein 1 isoform d.)
genome : 41,614,919 - 41,702,060 (87,142)
query : 1 - 5,740 (5,740/5,749)
21 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.998;
1.000;1.000;1.000;1.000;0.976;1.000;1.000;
1.000;0.992;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.998
InterPro :
IPR001781 : Zinc finger, LIM-type
GO :
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004177)
HIX0004177
HIT000363031 (
ENST00000381753
)
(LIM and calponin homology domains-containing protein 1 isoform e.)
genome : 41,614,919 - 41,702,061 (87,143)
query : 1 - 5,705 (5,705/5,705)
20 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004177)
HIX0004177
HIT000479925 (
ENST00000396595
)
(LIM and calponin homology domains-containing protein 1 isoform d.)
genome : 41,614,919 - 41,702,060 (87,142)
query : 1 - 5,740 (5,740/5,740)
21 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004177)
HIX0004177
HIT000493921
(
AK299297
)
(LIM and calponin homology domains-containing protein 1 isoform e.)
genome : 41,614,919 - 41,699,653 (84,735)
query : 1 - 3,294 (3,294/3,294)
20 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.976;1.000;1.000;1.000;
0.992;1.000;1.000;1.000;1.000;0.994)3'
coverage = 1.000
InterPro :
IPR001781 : Zinc finger, LIM-type
GO :
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004177)
HIX0004177
HIT000493539
(
AK298915
)
(LIM and calponin homology domains-containing protein 1 isoform d.)
genome : 41,614,919 - 41,684,380 (69,462)
query : 1 - 2,304 (2,304/2,304)
16 exons
identity = 0.999
5'(1.000;0.995;0.996;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.976;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 30, cyto_nucl 17
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004177)
HIX0004177
HIT000494459
(
AK299835
)
(LIM and calponin homology domains-containing protein 1 isoform e.)
genome : 41,615,056 - 41,699,559 (84,504)
query : 3 - 3,148 (3,146/3,148)
21 exons
identity = 0.999
5'(1.000;1.000;0.996;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.992)3'
coverage = 0.999
InterPro :
IPR001781 : Zinc finger, LIM-type
GO :
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004177)
HIX0004177
HIT000490460
(
AK295836
)
(LIM and calponin homology domains-containing protein 1 isoform a.)
genome : 41,615,493 - 41,699,500 (84,008)
query : 1 - 3,052 (3,052/3,052)
21 exons
identity = 0.999
5'(1.000;1.000;1.000;0.992;1.000;0.998;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.997)3'
coverage = 1.000
InterPro :
IPR001781 : Zinc finger, LIM-type
GO :
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004177)
HIX0004177
HIT000608394 (
ENST00000508466
)
(LIM and calponin homology domains-containing protein 1 isoform d.)
genome : 41,615,493 - 41,699,500 (84,008)
query : 1 - 3,051 (3,051/3,051)
21 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004177)
HIX0004177
HIT000055241
(
BX640692
)
(LIM and calponin homology domains-containing protein 1 isoform d.)
genome : 41,615,526 - 41,701,003 (85,478)
query : 1 - 4,405 (4,405/4,422)
19 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;0.995;1.000;1.000;
1.000;1.000;0.976;1.000;1.000;1.000;1.000;
0.992;1.000;1.000;1.000;0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23, cyto 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004177)
HIX0004177
HIT000490408
(
AK295784
)
(LIM and calponin homology domains-containing protein 1 isoform a.)
genome : 41,615,567 - 41,699,493 (83,927)
query : 1 - 2,934 (2,934/2,934)
20 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.992;
1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR001781 : Zinc finger, LIM-type
GO :
0008270 : Molecular Function : zinc ion binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004177)
HIX0004181
HIT000109318 (
ENST00000264451
)
(Zinc transporter 9; ZnT-9; Human embryonic lung protein; HuEL; Solute carrier family 30 member 9;)
genome : 41,992,489 - 42,089,551 (97,063)
query : 1 - 3,295 (3,295/3,295)
18 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 24, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004181)
HIX0004181
HIT000613252 (
ENST00000513699
)
(Zinc transporter 9; ZnT-9; Human embryonic lung protein; HuEL; Solute carrier family 30 member 9;)
genome : 41,992,519 - 42,088,386 (95,868)
query : 1 - 2,217 (2,217/2,217)
19 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 23, extr 5, nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004181)
HIX0004181
HIT000202949 (
NM_006345
)
(Zinc transporter 9; ZnT-9; Human embryonic lung protein; HuEL; Solute carrier family 30 member 9;)
genome : 41,992,523 - 42,089,551 (97,029)
query : 1 - 3,261 (3,261/3,272)
18 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 24, mito 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004181)
HIX0004181
HIT000431704
(
AK312838
)
(Zinc transporter 9; ZnT-9; Human embryonic lung protein; HuEL; Solute carrier family 30 member 9;)
genome : 41,992,523 - 42,088,143 (95,621)
query : 1 - 1,853 (1,853/1,853)
18 exons
identity = 0.997
5'(0.996;0.994;0.983;0.990;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.992;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR002524 : Cation efflux protein
IPR009061 : DNA binding domain, putative
IPR022656 : XPA C- terminal
IPR027469 : Cation efflux protein transmembrane domain
GO :
0006812 : Biological Process : cation transport
0008324 : Molecular Function : cation transmembrane transporter activity
0016021 : Cellular Component : integral component of membrane
0055085 : Biological Process : transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 24, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004181)
HIX0004181
HIT000037764
(
BC016949
)
(Zinc transporter 9; ZnT-9; Human embryonic lung protein; HuEL; Solute carrier family 30 member 9;)
genome : 41,992,544 - 42,089,537 (96,994)
query : 1 - 3,226 (3,226/3,253)
18 exons
identity = 0.998
5'(0.996;0.994;0.983;0.990;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR002524 : Cation efflux protein
IPR009061 : DNA binding domain, putative
IPR022656 : XPA C- terminal
IPR027469 : Cation efflux protein transmembrane domain
GO :
0006812 : Biological Process : cation transport
0008324 : Molecular Function : cation transmembrane transporter activity
0016021 : Cellular Component : integral component of membrane
0055085 : Biological Process : transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 24, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004181)
HIX0004181
HIT000494541
(
AK299917
)
(Zinc transporter 9.)
genome : 41,992,547 - 42,088,386 (95,840)
query : 1 - 2,190 (2,190/2,190)
19 exons
identity = 0.998
5'(0.996;0.994;0.983;1.000;0.990;1.000;0.988;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR002524 : Cation efflux protein
IPR009061 : DNA binding domain, putative
IPR022656 : XPA C- terminal
IPR027469 : Cation efflux protein transmembrane domain
GO :
0006812 : Biological Process : cation transport
0008324 : Molecular Function : cation transmembrane transporter activity
0016021 : Cellular Component : integral component of membrane
0055085 : Biological Process : transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004181)
HIX0004181
HIT000061849
(
AF006621
)
(Zinc transporter 9; ZnT-9; Human embryonic lung protein; HuEL; Solute carrier family 30 member 9;)
genome : 41,992,549 - 42,089,538 (96,990)
query : 1 - 3,222 (3,222/3,250)
18 exons
identity = 0.998
5'(0.996;0.994;0.983;0.990;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.997)3'
coverage = 1.000
InterPro :
IPR002524 : Cation efflux protein
IPR009061 : DNA binding domain, putative
IPR022656 : XPA C- terminal
IPR027469 : Cation efflux protein transmembrane domain
GO :
0006812 : Biological Process : cation transport
0008324 : Molecular Function : cation transmembrane transporter activity
0016021 : Cellular Component : integral component of membrane
0055085 : Biological Process : transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 24, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004181)
HIX0004181
HIT000085814
(
BC000240
)
(Zinc transporter 9.)
genome : 41,992,562 - 42,089,538 (96,977)
query : 1 - 3,210 (3,210/3,233)
18 exons
identity = 0.998
5'(0.995;0.994;0.983;0.990;1.000;1.000;0.967;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR002524 : Cation efflux protein
IPR027469 : Cation efflux protein transmembrane domain
GO :
0006812 : Biological Process : cation transport
0008324 : Molecular Function : cation transmembrane transporter activity
0016021 : Cellular Component : integral component of membrane
0055085 : Biological Process : transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004181)
HIX0004181
HIT000033409
(
BC007732
)
(Zinc transporter 9; ZnT-9; Human embryonic lung protein; HuEL; Solute carrier family 30 member 9;)
genome : 41,992,562 - 42,089,182 (96,621)
query : 1 - 2,853 (2,853/2,920)
18 exons
identity = 0.998
5'(0.995;0.994;0.983;0.990;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR002524 : Cation efflux protein
IPR009061 : DNA binding domain, putative
IPR022656 : XPA C- terminal
IPR027469 : Cation efflux protein transmembrane domain
GO :
0006812 : Biological Process : cation transport
0008324 : Molecular Function : cation transmembrane transporter activity
0016021 : Cellular Component : integral component of membrane
0055085 : Biological Process : transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 24, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004181)
HIX0004181
HIT000251709
(
AY319413
)
(Zinc transporter 9.)
genome : 41,992,569 - 42,089,538 (96,970)
query : 1 - 3,127 (3,127/3,147)
18 exons
identity = 0.992
5'(0.896;0.994;0.983;0.980;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.950;1.000;1.000;
1.000;1.000;1.000;0.998)3'
coverage = 1.000
InterPro :
IPR002524 : Cation efflux protein
IPR009061 : DNA binding domain, putative
IPR022656 : XPA C- terminal
IPR027469 : Cation efflux protein transmembrane domain
GO :
0006812 : Biological Process : cation transport
0008324 : Molecular Function : cation transmembrane transporter activity
0016021 : Cellular Component : integral component of membrane
0055085 : Biological Process : transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 24, pero 4, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004181)
HIX0004181
HIT000384600
(
AK225470
)
(Zinc transporter 9; ZnT-9; Human embryonic lung protein; HuEL; Solute carrier family 30 member 9;)
genome : 41,992,586 - 42,089,052 (96,467)
query : 1 - 2,699 (2,699/2,699)
18 exons
identity = 0.998
5'(0.995;0.994;0.983;0.990;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.999)3'
coverage = 1.000
InterPro :
IPR002524 : Cation efflux protein
IPR009061 : DNA binding domain, putative
IPR022656 : XPA C- terminal
IPR027469 : Cation efflux protein transmembrane domain
GO :
0006812 : Biological Process : cation transport
0008324 : Molecular Function : cation transmembrane transporter activity
0016021 : Cellular Component : integral component of membrane
0055085 : Biological Process : transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 24, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004181)
HIX0004181
HIT000255660
(
AY594282
)
Representative transcript
(Zinc transporter 9; ZnT-9; Human embryonic lung protein; HuEL; Solute carrier family 30 member 9;)
genome : 41,992,669 - 42,088,143 (95,475)
query : 1 - 1,707 (1,707/1,707)
18 exons
identity = 0.999
5'(0.991;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR002524 : Cation efflux protein
IPR009061 : DNA binding domain, putative
IPR022656 : XPA C- terminal
IPR027469 : Cation efflux protein transmembrane domain
GO :
0006812 : Biological Process : cation transport
0008324 : Molecular Function : cation transmembrane transporter activity
0016021 : Cellular Component : integral component of membrane
0055085 : Biological Process : transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 24, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004181)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK082853
Pongo
sp. (Orangutan) : CR858064
Oryzias
sp. (Medaka) : ENSORLT00000000802
Tetraodon
sp. (Tetraodon) : GSTENT00029260001
Takifugu
sp. (Fugu) : SINFRUT00000132093
Rattus
sp. (Rat) : XM_001057251
Macaca
sp. (Macaque) : XM_001098524
Monodelphis
sp. (Opossum) : XM_001373088
Equus
sp. (Horse) : XM_001494445
Canis
sp. (Dog) : XM_539237
Bos
sp. (Cow) : XM_864282
Pan
sp. (Chimpanzee) : XR_024038
HIX0004176
eHIT000017314 ( ESTsASS_4_233 )
(Non-protein coding transcript.)
genome : 41,258,854 - 41,270,142 (11,289)
query : 1 - 893 (893/893)
9 exons
ESTs assembly
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0004176)
ESTs used for assembly :
AW246946,H29917,BE311888,BI547458
BF036499,BU076465,BG751712,BG716556
DT218914
AC098869.3
40500001-40558062 F -
NCBI
AC112717.5
40558063-40739920 F +
NCBI
AC131953.1
40739921-40873893 F +
NCBI
AC108937.4
40873894-40974926 F +
NCBI
AC093804.3
40974927-41150634 F +
NCBI
AC096712.3
41150635-41230139 F +
NCBI
AC095043.3
41230140-41406176 F +
NCBI
AC121159.2
41406177-41420708 F +
NCBI
AC108050.5
41420709-41632958 F +
NCBI
AC124009.4
41632959-41645307 F +
NCBI
AC105389.3
41645308-41830374 F +
NCBI
AC108210.4
41830375-41951753 F +
NCBI
AC106052.4
41951754-42020844 F +
NCBI
AC113151.5
42020845-42100000 F +
NCBI