bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0031774
HIT000621475 (
ENST00000522173
)
(Hypothetical protein.)
genome : 97,231,883 - 97,740,015 (508,133)
query : 1 - 799 (799/799)
4 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0031774)
HIX0205518
HIT000605435 (
ENST00000505291
)
(Cytochrome c oxidase, subunit VIIa family protein.)
genome : 97,823,952 - 97,824,201 (250)
query : 1 - 250 (250/250)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 23, cyto 5.5, cyto_nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0205518)
HIX0206118
HIT000616806 (
ENST00000517407
)
(Hypothetical short protein.)
genome : 98,041,852 - 98,056,210 (14,359)
query : 1 - 525 (525/525)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0206118)
HIX0024601
HIT000621967 (
ENST00000522676
)
(Sperm-tail PG-rich repeat-containing protein 2.)
genome : 98,105,244 - 98,893,505 (788,262)
query : 1 - 4,203 (4,203/4,203)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17.5, cyto_nucl 15.5, cyto 10.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024601)
HIX0024601
HIT000056952
(
BX648305
)
(Sperm-tail PG-rich repeat-containing protein 2.)
genome : 98,105,264 - 98,893,505 (788,242)
query : 1 - 4,185 (4,185/4,204)
5 exons
identity = 1.000
3'(0.999;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR010736 : Sperm-tail PG-rich repeat
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17.5, cyto_nucl 15.5, cyto 10.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024601)
HIX0024601
HIT000606546 (
ENST00000506482
)
(Sperm-tail PG-rich repeat-containing protein 2.)
genome : 98,156,795 - 98,814,354 (657,560)
query : 1 - 559 (559/559)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 11, mito 6, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024601)
HIX0215981
HIT000608830 (
ENST00000508933
)
(Conserved hypothetical protein.)
genome : 98,288,077 - 98,411,315 (123,239)
query : 1 - 537 (537/537)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, nucl 2.5, cyto_nucl 2.5, lyso 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215981)
HIX0215981
HIT000727847 (
NR_102713
)
(Conserved hypothetical protein.)
genome : 98,288,077 - 98,411,315 (123,239)
query : 1 - 537 (537/537)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, nucl 2.5, cyto_nucl 2.5, lyso 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0215981)
HIX0164070
HIT000484081 (
ENST00000401217
)
(Non-protein coding transcript.)
genome : 98,407,957 - 98,408,047 (91)
query : 1 - 91 (91/91)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0164070)
HIX0024601
HIT000051835
(
BC036870
)
Representative transcript
(Sperm-tail PG-rich repeat-containing protein 2.)
genome : 98,480,027 - 99,064,391 (584,365)
query : 1 - 1,650 (1,650/1,750)
11 exons
identity = 0.999
3'(0.992;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 0.998
InterPro :
IPR010736 : Sperm-tail PG-rich repeat
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto 13
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024601)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK046955
Rattus
sp. (Rat) : BC128777
Bos
sp. (Cow) : ENSBTAT00000048227
Macaca
sp. (Macaque) : ENSMMUT00000018952
Monodelphis
sp. (Opossum) : ENSMODT00000039909
Pongo
sp. (Orangutan) : ENSPPYT00000017362
Tetraodon
sp. (Tetraodon) : GSTENT00029403001
Pan
sp. (Chimpanzee) : XM_001165076
Equus
sp. (Horse) : XM_001915706
Canis
sp. (Dog) : XM_544989
HIX0024601
HIT000317918 (
NM_174952
)
(Sperm-tail PG-rich repeat-containing protein 2.)
genome : 98,480,025 - 99,064,391 (584,367)
query : 1 - 1,654 (1,654/1,654)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto 13
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024601)
HIX0024601
HIT000114113 (
ENST00000295268
)
(Sperm-tail PG-rich repeat-containing protein 2.)
genome : 98,480,027 - 99,064,391 (584,365)
query : 1 - 1,652 (1,652/1,652)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto 13
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0024601)
HIX0205472
HIT000604455 (
ENST00000504217
)
(Alcohol dehydrogenase GroES-like domain containing protein.)
genome : 98,837,504 - 98,838,552 (1,049)
query : 1 - 1,049 (1,049/1,049)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 14, nucl 5.5, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0205472)
HIX0205312
HIT000581233 (
ENST00000477071
)
(Ribosomal protein L18/L5 family protein.)
genome : 98,946,541 - 98,947,391 (851)
query : 1 - 851 (851/851)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 12, extr 9, cyto 6.5, cyto_nucl 5, nucl 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0205312)
HIX0163612
HIT000516346 (
ENST00000418412
)
(Conserved hypothetical protein.)
genome : 98,969,706 - 98,970,194 (489)
query : 1 - 489 (489/489)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto_nucl 8.5, cyto 6.5, nucl 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0163612)
AC104816.4
97500001-97509565 F +
NCBI
AC113613.4
97509566-97594133 F +
NCBI
AC079616.4
97594134-97758046 F +
NCBI
AC096585.5
97758047-97797679 F +
NCBI
AC004544.1
97797680-97964323 F +
NCBI
AC079925.6
97964324-98046988 F +
NCBI
AC108515.3
98046989-98135274 F +
NCBI
AC021878.4
98135275-98294665 F -
NCBI
AC108217.3
98294666-98403866 F +
NCBI
AC034154.6
98403867-98613356 F -
NCBI
AC131949.1
98613357-98676566 F +
NCBI
AC018884.6
98676567-98840866 F +
NCBI
AC073855.5
98840867-99031890 F +
NCBI
AC019077.9
99031891-99100000 F +
NCBI