bases per tick :
500
200
100
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kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0207419
eHIT000019682 ( ESTsASS_6_332 )
genome : 119,871,526 - 120,166,230 (294,705)
query : 1 - 595 (595/595)
3 exons
ESTs assembly
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0207419)
ESTs used for assembly :
AI928162
HIX0207431
eHIT000019927 ( ESTsASS_6_577 )
genome : 120,168,079 - 120,170,917 (2,839)
query : 1 - 489 (489/489)
3 exons
ESTs assembly
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0207431)
ESTs used for assembly :
AI017971,BX112190
HIX0207556
HIT000659362 (
NR_036098
)
genome : 120,336,325 - 120,336,403 (79)
query : 1 - 79 (79/79)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0207556)
HIX0207556
HIT000691388 (
ENST00000579460
)
genome : 120,336,325 - 120,336,403 (79)
query : 1 - 79 (79/79)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0207556)
HIX0033177
HIT000091993
(
BC029985
)
genome : 120,408,332 - 120,409,524 (1,193)
query : 1 - 1,193 (1,193/1,236)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 0.999
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0033177)
HIX0185517
pHIT000104940 ( pHIT000104940 )
genome : 120,665,876 - 120,678,113 (12,238)
query : 1 - 267 (267/267)
2 exons
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0185517)
CAGE tag :
T06F073097F4
HIX0122222
HIT000345058 (
ENST00000363440
)
genome : 121,007,767 - 121,007,888 (122)
query : 1 - 122 (122/122)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0122222)
HIX0165249
HIT000504746 (
ENST00000404167
)
genome : 121,102,366 - 121,102,658 (293)
query : 1 - 293 (293/293)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0165249)
HIX0021317
HIT000213981 (
NM_152730
)
genome : 121,400,627 - 121,655,644 (255,018)
query : 1 - 5,132 (5,132/5,132)
32 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;0.938;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021317)
HIX0021317
HIT000481417 (
ENST00000398197
)
genome : 121,400,640 - 121,558,208 (157,569)
query : 1 - 2,690 (2,690/2,690)
12 exons
identity = 0.997
3'(1.000;1.000;1.000;1.000;0.938;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021317)
HIX0021317
HIT000046132
(
AK126259
)
genome : 121,400,642 - 121,558,208 (157,567)
query : 1 - 2,690 (2,690/2,690)
12 exons
identity = 0.994
3'(0.997;1.000;1.000;0.993;0.938;1.000;1.000;
1.000;1.000;1.000;0.991;0.989)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021317)
HIX0021317
HIT000016421
(
AK091554
)
genome : 121,401,383 - 121,655,626 (254,244)
query : 1 - 3,431 (3,431/3,431)
29 exons
identity = 0.992
3'(0.934;0.932;1.000;1.000;1.000;0.989;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021317)
HIX0021317
HIT000249734
(
AK131446
)
genome : 121,401,383 - 121,655,624 (254,242)
query : 3 - 5,325 (5,323/5,325)
36 exons
identity = 0.997
3'(0.998;0.995;1.000;1.000;0.938;0.993;1.000;
0.992;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021317)
HIX0021317
HIT000569360 (
ENST00000464622
)
genome : 121,401,383 - 121,655,624 (254,242)
query : 1 - 5,323 (5,323/5,323)
36 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;0.938;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021317)
HIX0021317
HIT000111260 (
ENST00000275159
)
genome : 121,401,383 - 121,655,576 (254,194)
query : 1 - 4,431 (4,431/4,431)
33 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;0.938;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021317)
HIX0021317
HIT000045258
(
AK125385
)
genome : 121,401,383 - 121,613,339 (211,957)
query : 12 - 3,211 (3,200/3,211)
22 exons
identity = 0.997
3'(0.998;0.995;1.000;1.000;0.938;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 0.997
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021317)
HIX0021317
HIT000012075
(
AK055461
)
genome : 121,401,383 - 121,563,396 (162,014)
query : 1 - 2,323 (2,323/2,323)
16 exons
identity = 0.995
3'(0.998;1.000;1.000;1.000;0.938;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.992;
1.000;0.980)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021317)
HIX0021317
HIT000481431 (
ENST00000398212
)
genome : 121,401,917 - 121,655,626 (253,710)
query : 1 - 3,824 (3,824/3,824)
32 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;0.938;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021317)
HIX0021317
HIT000619319 (
ENST00000519972
)
genome : 121,402,005 - 121,427,316 (25,312)
query : 1 - 369 (369/369)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021317)
HIX0021317
HIT000349744 (
ENST00000368464
)
genome : 121,417,056 - 121,436,462 (19,407)
query : 1 - 906 (906/906)
5 exons
identity = 0.991
3'(1.000;1.000;1.000;0.938;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021317)
HIX0021317
HIT000609356 (
ENST00000509492
)
genome : 121,433,532 - 121,481,183 (47,652)
query : 1 - 754 (754/754)
7 exons
identity = 0.989
3'(1.000;0.938;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021317)
HIX0021317
HIT000622626 (
ENST00000523345
)
genome : 121,452,773 - 121,484,208 (31,436)
query : 1 - 422 (422/429)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 0.984
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021317)
HIX0185517
pHIT000104940 ( pHIT000104940 )
genome : 120,665,876 - 120,678,113 (12,238)
query : 1 - 267 (267/267)
2 exons
JIGSAW prediction
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0185517)
CAGE tag :
T06F073097F4
HIX0207419
eHIT000019682 ( ESTsASS_6_332 )
genome : 119,871,526 - 120,166,230 (294,705)
query : 1 - 595 (595/595)
3 exons
ESTs assembly
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0207419)
ESTs used for assembly :
AI928162
HIX0207431
eHIT000019927 ( ESTsASS_6_577 )
genome : 120,168,079 - 120,170,917 (2,839)
query : 1 - 489 (489/489)
3 exons
ESTs assembly
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0207431)
ESTs used for assembly :
AI017971,BX112190
AL080277.12
120000001-120067407 F -
NCBI
AL449163.1
120067408-120080612 F -
NCBI
AL590545.7
120080613-120155321 F +
NCBI
AL162382.13
120155322-120208915 F +
NCBI
AL158135.5
120208916-120273669 F +
NCBI
AL049613.2
120273670-120393569 F -
NCBI
AL136315.9
120393570-120486167 F -
NCBI
AL139105.17
120486168-120550918 F +
NCBI
AL606830.4
120550919-120616290 F +
NCBI
AL603904.5
120616291-120713769 F +
NCBI
AL590731.12
120713770-120863158 F +
NCBI
AL096854.5
120863159-120954224 F -
NCBI
AL357332.11
120954225-121028115 F +
NCBI
AL357513.8
121028116-121205660 F +
NCBI
AL512446.8
121205661-121266818 F +
NCBI
AC064878.9
121266819-121339426 F -
NCBI
AL035593.11
121339427-121427368 F -
NCBI
AL365508.19
121427369-121523583 F +
NCBI
AL590225.4
121523584-121588597 F +
NCBI
AL589910.9
121588598-121600000 F +
NCBI