bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0019184
HIT000111203 (
ENST00000274695
)
genome : 20,534,688 - 21,232,635 (697,948)
query : 1 - 3,272 (3,272/3,272)
16 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019184)
HIX0019184
HIT000206643 (
NM_017774
)
genome : 20,534,688 - 21,232,635 (697,948)
query : 1 - 3,272 (3,272/3,272)
16 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019184)
HIX0019184
HIT000359904 (
ENST00000378624
)
genome : 20,534,688 - 21,232,635 (697,948)
query : 1 - 3,096 (3,096/3,096)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019184)
HIX0019184
HIT000048419
(
AK128546
)
genome : 20,534,688 - 21,232,632 (697,945)
query : 1 - 3,094 (3,094/3,094)
14 exons
identity = 0.999
5'(1.000;1.000;1.000;0.994;0.999)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019184)
HIX0019184
HIT000424532
(
AK291735
)
genome : 20,534,708 - 21,231,343 (696,636)
query : 1 - 1,960 (1,960/1,960)
16 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;0.994;1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019184)
HIX0019184
HIT000002824
(
AK000349
)
genome : 20,534,757 - 21,232,633 (697,877)
query : 1 - 2,627 (2,627/2,642)
17 exons
identity = 0.997
5'(1.000;1.000;1.000;1.000;0.994;0.996;0.985)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019184)
HIX0019184
HIT000388217
(
BC121020
)
genome : 20,534,758 - 21,231,393 (696,636)
query : 1 - 1,960 (1,960/1,960)
16 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019184)
HIX0019184
HIT000388218
(
BC121021
)
genome : 20,534,758 - 21,231,393 (696,636)
query : 1 - 1,960 (1,960/1,960)
16 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019184)
HIX0019184
HIT000359890 (
ENST00000378610
)
genome : 20,546,572 - 21,232,635 (686,064)
query : 1 - 3,115 (3,115/3,115)
14 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019184)
HIX0019184
HIT000007425
(
AK024151
)
genome : 21,065,350 - 21,232,632 (167,283)
query : 1 - 1,730 (1,730/1,730)
3 exons
identity = 0.994
5'(1.000;1.000;0.994)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019184)
HIX0033044
HIT000068228
(
AF090895
)
genome : 21,081,887 - 21,083,501 (1,615)
query : 1 - 1,616 (1,616/1,617)
1 exon
identity = 0.995
5'(0.995)3'
coverage = 0.999
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0033044)
HIX0207421
eHIT000019751 ( ESTsASS_6_401 )
genome : 21,139,661 - 21,141,164 (1,504)
query : 1 - 500 (500/500)
2 exons
ESTs assembly
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0207421)
ESTs used for assembly :
DB451834
HIX0200978
HIT000015122
(
AK074342
)
genome : 21,199,333 - 21,200,820 (1,488)
query : 1 - 1,488 (1,488/1,501)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0200978)
HIX0019184
HIT000580706 (
ENST00000476517
)
genome : 21,201,043 - 21,231,672 (30,630)
query : 1 - 840 (840/840)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0019184)
HIX0165632
HIT000524308 (
ENST00000426374
)
genome : 21,354,642 - 21,355,527 (886)
query : 1 - 386 (386/386)
2 exons
identity = 0.990
3'(1.000;0.980)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0165632)
HIX0207484
HIT000545662 (
ENST00000447728
)
genome : 21,522,707 - 21,524,003 (1,297)
query : 1 - 543 (543/543)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0207484)
HIX0032765
HIT000199970 (
NM_003107
)
genome : 21,593,972 - 21,598,848 (4,877)
query : 1 - 4,877 (4,877/4,912)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032765)
HIX0032765
HIT000105475 (
ENST00000244745
)
genome : 21,593,972 - 21,598,847 (4,876)
query : 1 - 4,876 (4,876/4,876)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032765)
HIX0032765
HIT000065818
(
AF070669
)
genome : 21,593,982 - 21,594,722 (741)
query : 1 - 741 (741/742)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 0.999
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032765)
HIX0032765
HIT000070410
(
AF124147
)
genome : 21,593,999 - 21,594,527 (529)
query : 1 - 529 (529/529)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032765)
HIX0032765
HIT000264907
(
BC072668
)
genome : 21,594,071 - 21,596,236 (2,166)
query : 1 - 2,085 (2,085/2,107)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032765)
HIX0032765
HIT000642517 (
ENST00000543472
)
genome : 21,594,071 - 21,596,233 (2,163)
query : 1 - 2,082 (2,082/2,082)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032765)
HIX0032765
HIT000323105
(
X70683
)
genome : 21,594,420 - 21,597,212 (2,793)
query : 5 - 2,795 (2,791/2,797)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 0.998
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032765)
HIX0032765
HIT000322751
(
X65661
)
genome : 21,594,973 - 21,595,134 (162)
query : 1 - 162 (162/162)
1 exon
identity = 0.988
5'(0.988)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032765)
HIX0032765
HIT000247788
(
AJ420500
)
genome : 21,597,661 - 21,598,848 (1,188)
query : 12 - 1,196 (1,185/1,233)
1 exon
identity = 0.997
5'(0.997)3'
coverage = 0.991
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0032765)
HIX0201011
HIT000504894 (
ENST00000404566
)
genome : 21,602,359 - 21,602,614 (256)
query : 1 - 256 (256/256)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0201011)
HIX0021914
HIT000429078
(
AK310212
)
genome : 21,665,003 - 21,920,372 (255,370)
query : 1 - 1,306 (1,306/1,306)
8 exons
identity = 0.988
5'(1.000;1.000;1.000;1.000;0.986;1.000;1.000;
0.750)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021914)
HIX0021914
HIT000495426
(
AK300802
)
genome : 21,666,646 - 21,979,247 (312,602)
query : 1 - 979 (979/979)
7 exons
identity = 0.999
5'(1.000;0.996;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021914)
HIX0021914
HIT000009463
(
AK026189
)
genome : 21,666,675 - 22,194,615 (527,941)
query : 1 - 1,888 (1,888/1,904)
12 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.995;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021914)
HIX0021914
HIT000562170 (
NR_015410
)
genome : 21,666,675 - 22,194,615 (527,941)
query : 1 - 1,888 (1,888/1,904)
12 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;0.995;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021914)
HIX0021914
HIT000006139
(
AK022865
)
genome : 21,669,050 - 22,194,614 (525,565)
query : 1 - 1,634 (1,634/1,634)
12 exons
identity = 0.998
5'(0.988;1.000;1.000;1.000;0.992;1.000;1.000;
1.000;1.000;1.000;1.000;0.997)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021914)
HIX0033010
HIT000218399
(
U17618
)
genome : 21,822,767 - 21,822,968 (202)
query : 1 - 202 (202/203)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 0.995
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0033010)
HIX0078318
HIT000218398
(
U17617
)
genome : 21,822,767 - 21,822,968 (202)
query : 2 - 203 (202/203)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 0.995
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0078318)
HIX0021914
HIT000021488
(
AK096633
)
genome : 21,845,774 - 21,983,052 (137,279)
query : 1 - 2,417 (2,417/2,417)
5 exons
identity = 0.999
5'(0.995;1.000;1.000;1.000;0.999)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021914)
HIX0021914
HIT000097833
(
BC044235
)
genome : 21,898,951 - 22,214,733 (315,783)
query : 1 - 1,496 (1,496/1,612)
11 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.989;1.000;1.000;1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021914)
HIX0005615
HIT000022852
(
AK097998
)
genome : 21,965,727 - 21,967,577 (1,851)
query : 1 - 1,851 (1,851/1,853)
1 exon
identity = 0.997
3'(0.997)5'
coverage = 0.999
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005615)
HIX0021914
HIT000542199 (
ENST00000444265
)
genome : 22,056,775 - 22,111,157 (54,383)
query : 1 - 327 (327/327)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021914)
HIX0217040
HIT000484235_05 (
ENST00000401371
)
genome : 22,123,096 - 22,846,792 (723,697)
query : 1 - 95 (95/95)
2 exons
identity = 0.969
3'(0.981)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0217040)
HIX0025136
HIT000659279 (
NR_034143
)
genome : 22,134,831 - 22,147,422 (12,592)
query : 1 - 2,295 (2,295/2,308)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025136)
HIX0025136
HIT000046041
(
AK126168
)
genome : 22,135,186 - 22,147,422 (12,237)
query : 1 - 1,940 (1,940/1,940)
3 exons
identity = 0.998
3'(0.998;1.000;1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025136)
HIX0025136
HIT000679937 (
ENST00000566912
)
genome : 22,135,186 - 22,147,422 (12,237)
query : 1 - 1,940 (1,940/1,940)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025136)
HIX0025136
HIT000557610
(
EU250753
)
genome : 22,146,627 - 22,147,770 (1,144)
query : 1 - 1,029 (1,029/1,029)
2 exons
identity = 0.998
3'(1.000;0.998)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025136)
HIX0021914
HIT000019573
(
AK094718
)
genome : 22,146,883 - 22,196,049 (49,167)
query : 1 - 2,566 (2,566/2,566)
4 exons
identity = 0.996
5'(0.998;1.000;1.000;0.995)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021914)
HIX0021914
HIT000067334
(
AF086455
)
genome : 22,195,582 - 22,196,025 (444)
query : 1 - 445 (445/455)
1 exon
identity = 0.998
5'(0.998)3'
coverage = 0.998
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0021914)
HIX0165203
HIT000504414 (
ENST00000403247
)
genome : 22,213,535 - 22,214,466 (932)
query : 1 - 604 (604/604)
2 exons
identity = 0.992
3'(0.993;0.988)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0165203)
HIX0005616
HIT000024721
(
AL117559
)
genome : 22,221,010 - 22,222,619 (1,610)
query : 25 - 1,634 (1,610/1,654)
1 exon
identity = 0.997
5'(0.997)3'
coverage = 0.985
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005616)
HIX0005616
HIT000680754 (
ENST00000567753
)
genome : 22,221,031 - 22,222,624 (1,594)
query : 22 - 1,615 (1,594/1,615)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005616)
HIX0217098
HIT000675126 (
ENST00000561912
)
genome : 22,260,653 - 22,318,027 (57,375)
query : 1 - 341 (341/341)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0217098)
HIX0005617
HIT000037361
(
BC015850
)
genome : 22,287,480 - 22,297,730 (10,251)
query : 4 - 1,357 (1,354/1,388)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.996
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005617)
HIX0005617
HIT000653853 (
NM_001163558
)
genome : 22,287,473 - 22,303,082 (15,610)
query : 1 - 1,033 (1,033/1,043)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.999
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005617)
HIX0005617
HIT000197956 (
NM_000948
)
genome : 22,287,473 - 22,297,730 (10,258)
query : 1 - 1,361 (1,361/1,371)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.999
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005617)
HIX0005617
HIT000266204
(
BC088370
)
genome : 22,287,485 - 22,297,257 (9,773)
query : 1 - 879 (879/893)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005617)
HIX0005617
HIT000648030
(
GQ305133
)
genome : 22,287,479 - 22,303,082 (15,604)
query : 1 - 1,027 (1,027/1,027)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005617)
HIX0005617
HIT000117361 (
ENST00000306482
)
genome : 22,287,480 - 22,297,730 (10,251)
query : 1 - 1,354 (1,354/1,354)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005617)
HIX0005617
HIT000100399
(
D00411
)
genome : 22,287,480 - 22,294,813 (7,334)
query : 1 - 807 (807/807)
4 exons
identity = 0.995
3'(0.991;0.994;1.000;1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005617)
HIX0005617
HIT000195315
(
M29386
)
genome : 22,287,480 - 22,294,813 (7,334)
query : 1 - 807 (807/807)
4 exons
identity = 0.996
3'(0.991;1.000;1.000;1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005617)
HIX0005617
HIT000321890
(
X54393
)
genome : 22,287,486 - 22,303,035 (15,550)
query : 1 - 970 (970/970)
6 exons
identity = 0.997
3'(1.000;1.000;1.000;1.000;0.976;1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005617)
HIX0005617
HIT000320833
(
V00566
)
genome : 22,287,486 - 22,297,214 (9,729)
query : 2 - 833 (832/833)
5 exons
identity = 0.998
3'(0.997;1.000;1.000;0.994;1.000)5'
coverage = 0.999
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005617)
HIX0005617
HIT000221263
(
U75583
)
genome : 22,287,712 - 22,294,812 (7,101)
query : 1 - 574 (574/574)
4 exons
identity = 0.995
3'(0.991;0.994;1.000;0.994)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005617)
HIX0005617
HIT000321891
(
X54394
)
genome : 22,294,638 - 22,303,015 (8,378)
query : 1 - 329 (329/329)
3 exons
identity = 0.994
3'(1.000;0.984;1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005617)
HIX0005617
HIT000195879
(
M58594
)
genome : 22,297,209 - 22,303,082 (5,874)
query : 1 - 194 (194/194)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005617)
HIX0005618
HIT000104261 (
ENST00000230012
)
genome : 22,569,678 - 22,570,750 (1,073)
query : 1 - 1,073 (1,073/1,073)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005618)
HIX0005618
HIT000212452 (
NM_138574
)
genome : 22,569,678 - 22,570,750 (1,073)
query : 1 - 1,073 (1,073/1,073)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005618)
HIX0005618
HIT000496734
(
AK302110
)
genome : 22,569,771 - 22,571,161 (1,391)
query : 1 - 1,166 (1,166/1,166)
2 exons
identity = 0.996
5'(1.000;0.995)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005618)
HIX0005618
HIT000013438
(
AK056824
)
genome : 22,569,795 - 22,571,892 (2,098)
query : 1 - 2,034 (2,034/2,034)
2 exons
identity = 0.996
5'(0.996;0.995)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005618)
HIX0005618
HIT000610633 (
ENST00000510882
)
genome : 22,569,795 - 22,571,892 (2,098)
query : 1 - 2,034 (2,034/2,034)
2 exons
identity = 0.997
5'(1.000;0.994)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005618)
HIX0033330
HIT000525709 (
ENST00000427775
)
genome : 22,589,366 - 22,594,062 (4,697)
query : 1 - 743 (743/743)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0033330)
HIX0207421
eHIT000019751 ( ESTsASS_6_401 )
genome : 21,139,661 - 21,141,164 (1,504)
query : 1 - 500 (500/500)
2 exons
ESTs assembly
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0207421)
ESTs used for assembly :
DB451834
AL022717.2
21000001-21073255 F -
NCBI
AL590129.3
21073256-21082507 F +
NCBI
AL513015.6
21082508-21195635 F +
NCBI
AL512405.13
21195636-21206935 F +
NCBI
AL451080.11
21206936-21263560 F +
NCBI
AL137004.7
21263561-21316454 F +
NCBI
AL031767.13
21316455-21435561 F +
NCBI
AL512380.20
21435562-21586533 F +
NCBI
AL136179.15
21586534-21713261 F +
NCBI
AL136313.27
21713262-21841313 F +
NCBI
AL160260.22
21841314-21915091 F +
NCBI
AL161436.12
21915092-22037905 F +
NCBI
AL008732.1
22037906-22141073 F -
NCBI
AL512344.13
22141074-22183804 F +
NCBI
AL359694.17
22183805-22279073 F +
NCBI
AL023883.6
22279074-22430209 F -
NCBI
AL591062.8
22430210-22474415 F +
NCBI
AL360158.18
22474416-22558209 F +
NCBI
AL033539.18
22558210-22600000 F +
NCBI