bases per tick :
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kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0217040
HIT000484235_05 (
ENST00000401371
)
(Non-protein coding transcript.)
genome : 22,123,096 - 22,846,792 (723,697)
query : 1 - 95 (95/95)
2 exons
identity = 0.969
3'(0.955)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0217040)
HIX0005618
HIT000104261 (
ENST00000230012
)
(Hepatoma-derived growth factor-like protein 1.)
genome : 22,569,678 - 22,570,750 (1,073)
query : 1 - 1,073 (1,073/1,073)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21.5, cyto_nucl 14.5, cyto 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005618)
HIX0005618
HIT000212452 (
NM_138574
)
(Hepatoma-derived growth factor-like protein 1.)
genome : 22,569,678 - 22,570,750 (1,073)
query : 1 - 1,073 (1,073/1,073)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21.5, cyto_nucl 14.5, cyto 6.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005618)
HIX0005618
HIT000496734
(
AK302110
)
(Hepatoma-derived growth factor-like protein 1.)
genome : 22,569,771 - 22,571,161 (1,391)
query : 1 - 1,166 (1,166/1,166)
2 exons
identity = 0.996
5'(1.000;0.995)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, mito 10, cyto_nucl 10
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005618)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK133357
Rattus
sp. (Rat) : AY061636
Bos
sp. (Cow) : BC109529
Pongo
sp. (Orangutan) : ENSPPYT00000018923
Macaca
sp. (Macaque) : XM_001099743
Equus
sp. (Horse) : XM_001915624
Pan
sp. (Chimpanzee) : XM_527245
Canis
sp. (Dog) : XM_848364
HIX0005618
HIT000013438
(
AK056824
)
Representative transcript
(Hepatoma-derived growth factor-like protein 1.)
genome : 22,569,795 - 22,571,892 (2,098)
query : 1 - 2,034 (2,034/2,034)
2 exons
identity = 0.996
5'(0.996;0.995)3'
coverage = 1.000
InterPro :
IPR000313 : PWWP domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21.5, cyto_nucl 14, cyto 5.5, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005618)
HIX0005618
HIT000610633 (
ENST00000510882
)
(Hepatoma-derived growth factor-like protein 1.)
genome : 22,569,795 - 22,571,892 (2,098)
query : 1 - 2,034 (2,034/2,034)
2 exons
identity = 0.997
5'(1.000;0.994)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21.5, cyto_nucl 14.5, cyto 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0005618)
HIX0033330
HIT000525709 (
ENST00000427775
)
(Conserved hypothetical protein.)
genome : 22,589,366 - 22,594,062 (4,697)
query : 1 - 743 (743/743)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 28, E.R. 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0033330)
HIX0207425
eHIT000019791 ( ESTsASS_6_441 )
Representative transcript
(Non-protein coding transcript.)
genome : 22,643,793 - 22,718,153 (74,361)
query : 1 - 704 (704/704)
3 exons
ESTs assembly
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0207425)
ESTs used for assembly :
BX113657
HIX0165577
HIT000518506 (
ENST00000420572
)
(Conserved hypothetical protein.)
genome : 22,744,624 - 23,032,009 (287,386)
query : 1 - 871 (871/871)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13.5, extr 11, nucl 11, cyto 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0165577)
HIX0165239
HIT000504688 (
ENST00000404015
)
(60S ribosomal protein L6E family protein.)
genome : 23,102,908 - 23,103,774 (867)
query : 1 - 867 (867/867)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, mito 12, cyto_nucl 11.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0165239)
HIX0165672
HIT000528935 (
ENST00000431001
)
(Hypothetical short protein.)
genome : 23,337,939 - 23,346,788 (8,850)
query : 1 - 312 (312/312)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0165672)
HIX0165170
HIT000504198 (
ENST00000402635
)
(Conserved hypothetical protein.)
genome : 23,649,724 - 23,650,002 (279)
query : 1 - 279 (279/279)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13, extr 10, mito 5, extr_plas 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0165170)
HIX0034871
HIT000054332
(
BX537547
)
Representative transcript
(Serine palmitoyltransferase 1; EC=2.3.1.50; Long chain base biosynthesis protein 1; LCB 1; Serine-palmitoyl-CoA transferase 1; SPT 1; SPT1;)
genome : 23,854,367 - 23,857,874 (3,508)
query : 1 - 3,512 (3,512/3,521)
1 exon
identity = 0.996
5'(0.996)3'
coverage = 1.000
EC number :
EC 2.3.1.50
KEGG pathway :
00600 : Sphingolipid metabolism (25)
01100 : Metabolic pathways (1346)
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17, nucl 12
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034871)
Ortholog candidate ( ->
Evola
)
Pan
sp. (Chimpanzee) : ENSPTRT00000004418
HIX0165415
HIT000505854_01 (
ENST00000407089
)
(Hypothetical short protein.)
genome : 23,856,926 - 23,857,046 (121)
query : 1 - 121 (121/121)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12, extr 5, mito 4.5, nucl 4, E.R._mito 4,
pero 3, extr_plas 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0165415)
HIX0165340
HIT000505374 (
ENST00000405827
)
(Exonuclease, RNase T/DNA polymerase III domain containing protein.)
genome : 23,972,107 - 23,973,169 (1,063)
query : 1 - 1,063 (1,063/1,063)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14, extr 7, cyto_plas 7, nucl 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0165340)
HIX0165223
HIT000504554 (
ENST00000403629
)
(RNA recognition motif domain containing protein.)
genome : 24,002,052 - 24,002,658 (607)
query : 1 - 607 (607/607)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0165223)
HIX0207425
eHIT000019791 ( ESTsASS_6_441 )
Representative transcript
(Non-protein coding transcript.)
genome : 22,643,793 - 22,718,153 (74,361)
query : 1 - 704 (704/704)
3 exons
ESTs assembly
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0207425)
ESTs used for assembly :
BX113657
AL360158.18
22500001-22558209 F +
NCBI
AL033539.18
22558210-22701538 F +
NCBI
AL121979.13
22701539-22722830 F +
NCBI
AL512451.7
22722831-22782179 F +
NCBI
AL031391.1
22782180-22857856 F -
NCBI
AL160406.8
22857857-22918657 F +
NCBI
AL590231.8
22918658-22959448 F +
NCBI
AL035401.23
22959449-23065408 F +
NCBI
AL591416.4
23065409-23220476 F +
NCBI
AL590866.9
23220477-23294634 F +
NCBI
AL139231.13
23294635-23391502 F +
NCBI
AL157370.7
23391503-23426068 F +
NCBI
AL031347.1
23426069-23601523 F -
NCBI
AL133270.24
23601524-23689212 F +
NCBI
AL138915.16
23689213-23731681 F +
NCBI
AL139093.11
23731682-23863575 F +
NCBI
AL512372.11
23863576-23901900 F +
NCBI
AL032822.1
23901901-24001702 F -
NCBI
AL445196.7
24001703-24100000 F +
NCBI