Clickable map CGI

HIX0033698
HIT000546813 ( ENST00000448879 )
  (Semaphorin-3A; Semaphorin III; Sema III; Precursor;)
  genome : 83,823,791 - 84,121,865 (298,075)
  query : 1 - 534 (534/534)
  5 exons
  identity = 1.000
  3'(1.000;1.000;1.000)5'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    extr 28, cyto_mito 4
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0033698)

HIX0033698
HIT000522489 ( ENST00000424555 )
  (Conserved hypothetical protein.)
  genome : 83,823,845 - 84,122,040 (298,196)
  query : 1 - 568 (568/568)
  4 exons
  identity = 1.000
  3'(1.000;1.000)5'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0033698)

HIX0033698
HIT000575902 ( ENST00000471474 )
  (Hypothetical short protein.)
  genome : 83,935,698 - 84,001,607 (65,910)
  query : 1 - 688 (688/688)
  4 exons
  identity = 1.000
  3'(1.000;1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0033698)

HIX0033698
HIT000594424 ( ENST00000490883 )
  (Non-protein coding transcript.)
  genome : 83,936,523 - 84,001,584 (65,062)
  query : 1 - 237 (237/237)
  3 exons
  identity = 1.000
  3'(1.000;1.000)5'
  coverage = 1.000
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0033698)

HIX0168217
HIT000518822 ( ENST00000420888 )
  (Ribosomal protein L30, ferredoxin-like fold domain containing protein.)
  genome : 84,157,438 - 84,158,146 (709)
  query : 1 - 709 (709/709)
  1 exon
  identity = 1.000
  3'(1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    mito 21, extr 5, cyto 5
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0168217)

HIX0025514
HIT000056547 ( BX647900 )
  Representative transcript
  (Conserved hypothetical protein.)
  genome : 84,161,792 - 84,204,159 (42,368)
  query : 2 - 4,105 (4,104/4,125)
  3 exons
  identity = 0.998
  5'(1.000;1.000;0.998)3'
  coverage = 0.999
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    extr 15, cyto 7.5, extr_plas 7.5, cyto_nucl 6
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0025514)

HIX0025514
HIT000548911 ( ENST00000450977 )
  (Hypothetical short protein.)
  genome : 84,161,792 - 84,204,159 (42,368)
  query : 1 - 4,104 (4,104/4,104)
  3 exons
  identity = 1.000
  5'(1.000;1.000;1.000)3'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    extr 15, cyto 7.5, extr_plas 7.5, cyto_nucl 6
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0025514)

HIX0025514
HIT000543934 ( ENST00000446000 )
  (Hypothetical short protein.)
  genome : 84,178,522 - 84,213,638 (35,117)
  query : 1 - 349 (349/349)
  3 exons
  identity = 1.000
  5'(1.000;1.000;1.000)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 13, mito 8.5, cyto 6.5, extr_plas 6.5,
    mito_pero 5.5
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0025514)

HIX0207943
HIT000533857 ( ENST00000435923 )
  (Conserved hypothetical protein.)
  genome : 84,477,193 - 84,477,569 (377)
  query : 1 - 377 (377/377)
  1 exon
  identity = 1.000
  3'(1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 15, cyto 10, nucl 4
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0207943)

HIX0187420
HIT000543988 ( ENST00000446054 )
  (High mobility group nucleosome-binding domain-containing family protein.)
  genome : 84,505,870 - 84,506,272 (403)
  query : 1 - 403 (403/403)
  1 exon
  identity = 1.000
  5'(1.000)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 19, cyto 8, extr 5
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0187420)

HIX0187420
HIT000514377 ( ENST00000416443 )
  (High mobility group nucleosome-binding domain-containing family protein.)
  genome : 84,505,977 - 84,506,234 (258)
  query : 1 - 258 (258/258)
  1 exon
  identity = 1.000
  5'(1.000)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 27, extr 3
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0187420)

HIX0168484
HIT000537039 ( ENST00000439105 )
  (Hypothetical short protein.)
  genome : 84,568,665 - 84,569,561 (897)
  query : 1 - 782 (782/782)
  2 exons
  identity = 1.000
  3'(1.000;1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 30
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0168484)

HIX0167795
HIT000675905_01 ( ENST00000562726 )
  (Nuclear factor hnRNPA1 family protein.)
  genome : 84,612,811 - 84,614,155 (1,345)
  query : 2 - 1,359 (1,358/1,377)
  1 exon
  identity = 0.957
  5'(0.957)3'
  coverage = 0.996
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 32
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0167795)

HIX0167795
HIT000525150_03 ( ENST00000427216 )
  (Nuclear factor hnRNPA1 family protein.)
  genome : 84,612,811 - 84,613,932 (1,122)
  query : 1 - 688 (688/688)
  2 exons
  identity = 0.957
  5'(0.974;0.934)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 32
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0167795)

HIX0167795
HIT000504400_03 ( ENST00000403195 )
  (Nuclear factor hnRNPA1 family protein.)
  genome : 84,612,812 - 84,613,857 (1,046)
  query : 1 - 857 (857/857)
  2 exons
  identity = 0.957
  5'(0.965;0.951)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 32
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0167795)

HIX0167795
HIT000661812_01 ( ENST00000547708 )
  (RNA recognition motif domain containing protein.)
  genome : 84,612,812 - 84,613,689 (878)
  query : 1 - 530 (530/530)
  2 exons
  identity = 0.970
  5'(0.974;0.960)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 32
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0167795)

HIX0167795
HIT000544375_01 ( ENST00000446441 )
  (Nuclear factor hnRNPA1 family protein.)
  genome : 84,612,863 - 84,613,825 (963)
  query : 1 - 963 (963/963)
  1 exon
  identity = 1.000
  5'(1.000)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 32
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0167795)

HIX0167795
HIT000505465_02 ( ENST00000406078 )
  (Nuclear factor hnRNPA1 family protein.)
  genome : 84,612,872 - 84,613,825 (954)
  query : 1 - 960 (960/960)
  1 exon
  identity = 0.963
  5'(0.962)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 32
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0167795)

HIX0167795
HIT000620590_03 ( ENST00000521273 )
  (Nuclear factor hnRNPA1 family protein.)
  genome : 84,612,872 - 84,613,825 (954)
  query : 1 - 963 (963/963)
  1 exon
  identity = 0.960
  5'(0.960)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 32
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0167795)

HIX0167795
HIT000534024 ( ENST00000436090 )
  (Nuclear factor hnRNPA1 family protein.)
  genome : 84,612,872 - 84,613,822 (951)
  query : 1 - 951 (951/951)
  1 exon
  identity = 1.000
  5'(1.000)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 32
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0167795)

HIX0167795
HIT000678393_01 ( ENST00000565308 )
  (Nuclear factor hnRNPA1 family protein.)
  genome : 84,612,874 - 84,613,825 (952)
  query : 1 - 961 (961/961)
  1 exon
  identity = 0.960
  5'(0.960)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 32
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0167795)

HIX0167795
HIT000609556_03 ( ENST00000509706 )
  (Nuclear factor hnRNPA1 family protein.)
  genome : 84,613,079 - 84,613,825 (747)
  query : 1 - 756 (756/756)
  1 exon
  identity = 0.955
  5'(0.955)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 32
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0167795)

HIX0006812
HIT000214003 ( NM_152754 )
  (Semaphorin-3D precursor.)
  genome : 84,624,873 - 84,751,247 (126,375)
  query : 1 - 6,257 (6,257/6,276)
  17 exons
  identity = 0.999
  3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
      1.000;1.000;1.000;0.965;1.000;1.000;1.000;
      1.000;1.000;1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    E.R._mito 9.5, mito 8, E.R. 7.5, mito_pero 7, cyto 6,
    extr 3, nucl 3, cyto_golg 3
  RefSeq
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0006812)

HIX0006812
HIT000057299 ( BX648652 )
  (Hypothetical short protein.)
  genome : 84,624,873 - 84,628,486 (3,614)
  query : 1 - 3,614 (3,614/3,633)
  1 exon
  identity = 1.000
  3'(1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    mito 22, cyto 3.5, cyto_nucl 3.5, extr 3
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0006812)

HIX0006812
HIT000112448 ( ENST00000284136 )
  (Semaphorin-3D precursor.)
  genome : 84,624,869 - 84,751,251 (126,383)
  query : 1 - 6,265 (6,265/6,265)
  17 exons
  identity = 0.999
  3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
      1.000;1.000;1.000;0.965;1.000;1.000;1.000;
      1.000;1.000;1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    E.R._mito 9.5, mito 8, E.R. 7.5, mito_pero 7, cyto 6,
    extr 3, nucl 3, cyto_golg 3
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0006812)

HIX0006812
HIT000040837 ( BC029590 )
  (Semaphorin-3D precursor.)
  genome : 84,628,719 - 84,671,255 (42,537)
  query : 1 - 1,497 (1,497/1,514)
  10 exons
  identity = 1.000
  3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
      1.000;1.000;1.000)5'
  coverage = 0.999
  InterPro :
    IPR001627 : Sema domain
    IPR016201 : Plexin-like fold
    IPR027231 : Semaphorin
  GO :
    0004872 : Molecular Function : receptor activity
    0005515 : Molecular Function : protein binding
    0007275 : Biological Process : multicellular organismal development
    0016020 : Cellular Component : membrane
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 17, cyto_nucl 14.8333, nucl 11.5,
    cyto_plas 9.83333
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0006812)

HIX0006812
HIT000587903 ( ENST00000484038 )
  (Semaphorin-3D precursor.)
  genome : 84,628,713 - 84,671,255 (42,543)
  query : 1 - 1,503 (1,503/1,503)
  10 exons
  identity = 1.000
  3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
      1.000;1.000;1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 17, cyto_nucl 14.8333, nucl 11.5,
    cyto_plas 9.83333
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0006812)

HIX0168717
HIT000552105 ( ENST00000454171 )
  (Heat shock protein 70 family protein.)
  genome : 84,657,144 - 84,659,008 (1,865)
  query : 1 - 1,865 (1,865/1,865)
  1 exon
  identity = 1.000
  5'(1.000)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    mito 22.5, mito_pero 12, cyto 5
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0168717)

HIX0217828
HIT000568115 ( ENST00000463315 )
  (Conserved hypothetical protein.)
  genome : 84,670,394 - 84,685,081 (14,688)
  query : 1 - 1,257 (1,257/1,257)
  2 exons
  identity = 0.996
  5'(1.000;0.898)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 22, mito 5, cyto_nucl 2.33333, cyto 2,
    cyto_pero 1.83333
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0217828)

HIX0006812
HIT000005076 ( AK021802 )
  (Semaphorin-3D precursor.)
  genome : 84,670,394 - 84,685,081 (14,688)
  query : 1 - 1,258 (1,258/1,258)
  2 exons
  identity = 0.994
  3'(0.998;0.898)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    mito 10, extr 7, nucl 7, cyto_nucl 6.5, cyto 4,
    pero 2, golg 2
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0006812)

HIX0006812
HIT000427982 ( AK309116 )
  (Semaphorin-3D precursor.)
  genome : 84,679,673 - 84,816,171 (136,499)
  query : 1 - 1,605 (1,605/1,605)
  10 exons
  identity = 0.997
  3'(1.000;0.965;1.000;1.000;1.000;1.000;1.000;
      1.000;1.000;1.000)5'
  coverage = 1.000
  InterPro :
    IPR001627 : Sema domain
    IPR027231 : Semaphorin
  GO :
    0005515 : Molecular Function : protein binding
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 11, extr 8, mito_pero 5.5, mito 5, E.R._mito 5,
    plas 3
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0006812)

HIX0006812
HIT000542801 ( ENST00000444867 )
  (Semaphorin-3D precursor.)
  genome : 84,679,673 - 84,816,171 (136,499)
  query : 1 - 1,605 (1,605/1,605)
  10 exons
  identity = 0.997
  3'(1.000;0.965;1.000;1.000;1.000;1.000;1.000;
      1.000;1.000;1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 11, extr 8, mito_pero 5.5, mito 5, E.R._mito 5,
    plas 3
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0006812)

HIX0168326
HIT000527207 ( ENST00000429273 )
  (Dynein light chain, type 1/2 family protein.)
  genome : 85,010,434 - 85,010,691 (258)
  query : 1 - 258 (258/258)
  1 exon
  identity = 1.000
  3'(1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    cyto 17, extr 11, mito 3
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0168326)

HIX0167755
HIT000535999 ( ENST00000438065 )
  (Hypothetical short protein.)
  genome : 85,050,438 - 85,118,609 (68,172)
  query : 1 - 788 (788/788)
  4 exons
  identity = 1.000
  5'(1.000;1.000;1.000;1.000)3'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 21, cyto 6, mito 3, cyto_pero 3, cyto_plas 3,
    cyto_golg 3
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0167755)

HIX0167755
HIT000520382 ( ENST00000422448 )
  (Hypothetical short protein.)
  genome : 85,104,543 - 85,118,548 (14,006)
  query : 1 - 485 (485/485)
  2 exons
  identity = 1.000
  5'(1.000;1.000)3'
  coverage = 1.000
  SOSUI :
    MEMBRANE PROTEIN
  PSORT :
    extr 17, cyto 9, mito 4
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0167755)

HIX0168475
HIT000536729 ( ENST00000438795 )
  (Conserved hypothetical protein.)
  genome : 85,265,329 - 85,265,660 (332)
  query : 1 - 332 (332/332)
  1 exon
  identity = 1.000
  3'(1.000)5'
  coverage = 1.000
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    nucl 15, extr 8, cyto 8, mito_nucl 8
  Ensembl
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0168475)

HIX0033990
HIT000098015 ( BC045182 )
  Representative transcript
  (Conserved hypothetical protein.)
  genome : 85,588,564 - 85,591,033 (2,470)
  query : 6 - 2,476 (2,471/2,490)
  1 exon
  identity = 0.998
  3'(0.998)5'
  coverage = 0.998
  SOSUI :
    SOLUBLE PROTEIN
  PSORT :
    extr 13, cyto 10, nucl 9
  H-InvDB(Transcript view)
  H-InvDB(Locus view)
  DDBJ
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0033990)

HIX0187494
pHIT000079999 ( pHIT000079999 )
  Representative transcript
  (Hypothetical short protein.)
  genome : 84,477,261 - 84,569,371 (92,111)
  query : 1 - 225 (225/225)
  3 exons
  SOSUI :
    SOLUBLE PROTEIN
  JIGSAW prediction
  cDNA-genome Alignment
  cDNA Multiple Alignment
    (HIX0187494)
  CAGE tag :
    H27BE25B1811

bases per tick : kb first site :
main : All Human Genes JIGSAW prediction ESTs assembly
homology : UCSC CCDS Pseudogene.org Conserved regions ( Segmental duplication P.troglodytes P.abelii M.mulatta M.musculus R.norvegicus C.familiaris E.caballus B.taurus M.domestica G.gallus D.rerio O.latipes T.nigroviridis T.rubripes )
gene prediction : FGENESH GenScan HMMgene tRNA
show... : SNPs ESTs(summary) ESTs(detail) CAGE tag(summary) CAGE tag(detail)
sequence viewer : = ( , )