bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0209063
HIT000631760 (
ENST00000532664
)
(Non-protein coding transcript.)
genome : 13,553,083 - 13,563,015 (9,933)
query : 1 - 270 (270/270)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0209063)
HIX0209077
HIT000633085 (
ENST00000534017
)
(Conserved hypothetical protein.)
genome : 13,599,318 - 13,600,290 (973)
query : 1 - 973 (973/973)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 19, cyto 6.5, cyto_nucl 5.5, nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0209077)
HIX0209009
HIT000624902 (
ENST00000525673
)
(Hypothetical short protein.)
genome : 13,701,610 - 13,706,618 (5,009)
query : 1 - 589 (589/589)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0209009)
HIX0209018
HIT000625889 (
ENST00000526681
)
(Conserved hypothetical protein.)
genome : 13,766,740 - 13,767,289 (550)
query : 1 - 550 (550/550)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto 6, mito 5, nucl 3, cyto_pero 3,
cyto_plas 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0209018)
HIX0209080
HIT000633631_01 (
ENST00000534576
)
(Hypothetical protein.)
genome : 13,880,196 - 13,880,931 (736)
query : 1 - 736 (736/736)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, extr 5, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0209080)
HIX0034312
HIT000083291
(
AY028700
)
Representative transcript
(Zeta-sarcoglycan.)
genome : 13,947,373 - 14,412,435 (465,063)
query : 1 - 1,479 (1,479/1,495)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR006875 : Sarcoglycan complex subunit protein
IPR027662 : Zeta-sarcoglycan
GO :
0016012 : Cellular Component : sarcoglycan complex
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 20, extr_plas 12.5, extr 3, E.R. 3, cyto 2,
mito 2, lyso 2, cyto_mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034312)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK136779
Canis
sp. (Dog) : ENSCAFT00000010944
Macaca
sp. (Macaque) : ENSMMUT00000009395
Monodelphis
sp. (Opossum) : ENSMODT00000024227
Oryzias
sp. (Medaka) : ENSORLT00000005151
Pongo
sp. (Orangutan) : ENSPPYT00000021418
Tetraodon
sp. (Tetraodon) : GSTENT00033521001
Takifugu
sp. (Fugu) : SINFRUT00000157359
Rattus
sp. (Rat) : XM_001066057
Equus
sp. (Horse) : XM_001488004
Danio
sp. (Zebrafish) : XM_001921806
Gallus
sp. (Chicken) : XM_429984
Pan
sp. (Chimpanzee) : XM_528075
HIX0034312
HIT000363358 (
ENST00000382080
)
(Zeta-sarcoglycan.)
genome : 13,947,373 - 15,095,848 (1,148,476)
query : 1 - 2,234 (2,234/2,234)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 24, extr_plas 13.5, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034312)
HIX0034312
HIT000212704 (
NM_139167
)
(Zeta-sarcoglycan.)
genome : 13,947,373 - 15,095,792 (1,148,420)
query : 1 - 2,178 (2,178/2,178)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 24, extr_plas 13.5, cyto 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034312)
HIX0034312
HIT000263610
(
BC069459
)
(Zeta-sarcoglycan.)
genome : 13,947,879 - 14,412,435 (464,557)
query : 1 - 973 (973/973)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR006875 : Sarcoglycan complex subunit protein
IPR027662 : Zeta-sarcoglycan
GO :
0016012 : Cellular Component : sarcoglycan complex
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 20, extr_plas 12.5, extr 3, E.R. 3, cyto 2,
mito 2, lyso 2, cyto_mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034312)
HIX0034312
HIT000388490
(
BC125037
)
(Zeta-sarcoglycan.)
genome : 13,947,883 - 14,412,435 (464,553)
query : 1 - 867 (867/867)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR006875 : Sarcoglycan complex subunit protein
IPR027662 : Zeta-sarcoglycan
GO :
0016012 : Cellular Component : sarcoglycan complex
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 17, extr_plas 12, extr 5, E.R. 3, lyso 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034312)
HIX0034312
HIT000519458 (
ENST00000421524
)
(Zeta-sarcoglycan.)
genome : 13,947,883 - 14,412,435 (464,553)
query : 1 - 867 (867/867)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 17, extr_plas 12, extr 5, E.R. 3, lyso 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034312)
HIX0034312
HIT000255022
(
AY502063
)
(Zeta-sarcoglycan.)
genome : 13,947,952 - 14,412,437 (464,486)
query : 38 - 939 (902/939)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.961
InterPro :
IPR006875 : Sarcoglycan complex subunit protein
IPR027662 : Zeta-sarcoglycan
GO :
0016012 : Cellular Component : sarcoglycan complex
0016021 : Cellular Component : integral component of membrane
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 24, extr_plas 13.5, cyto 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034312)
HIX0209025
HIT000626314 (
ENST00000527110
)
(Hypothetical short protein.)
genome : 14,018,806 - 14,022,868 (4,063)
query : 1 - 488 (488/488)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 28, cyto 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0209025)
HIX0125309
HIT000611348_02 (
ENST00000511644
)
(Translation Initiation factor eIF- 4e family protein.)
genome : 14,166,539 - 14,167,366 (828)
query : 3 - 686 (684/686)
2 exons
identity = 0.956
5'(0.949;0.966)3'
coverage = 0.997
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 24, extr 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0125309)
HIX0125309
HIT000627410_02 (
ENST00000528228
)
(Translation Initiation factor eIF- 4e family protein.)
genome : 14,166,542 - 14,167,181 (640)
query : 1 - 640 (640/640)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto 12.5, cyto_nucl 8.5, nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0125309)
HIX0208473
HIT000615629 (
ENST00000516226
)
(Non-protein coding transcript.)
genome : 14,345,285 - 14,345,388 (104)
query : 1 - 104 (104/104)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0208473)
HIX0218302
HIT000692512 (
ENST00000580600
)
(Conserved hypothetical protein.)
genome : 14,372,250 - 14,372,374 (125)
query : 1 - 125 (125/125)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218302)
HIX0209045
HIT000629347 (
ENST00000530195
)
(Non-protein coding transcript.)
genome : 14,547,891 - 14,548,128 (238)
query : 1 - 238 (238/238)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0209045)
HIX0152379
HIT000343886 (
ENST00000362257
)
(Non-protein coding transcript.)
genome : 14,710,947 - 14,711,019 (73)
query : 1 - 73 (73/73)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0152379)
HIX0152379
HIT000658137 (
NR_029875
)
(Non-protein coding transcript.)
genome : 14,710,947 - 14,711,019 (73)
query : 1 - 73 (73/73)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0152379)
HIX0007328
HIT000011355
(
AK054741
)
Representative transcript
(Conserved hypothetical protein.)
genome : 14,735,721 - 14,737,679 (1,959)
query : 1 - 1,960 (1,960/1,960)
1 exon
identity = 0.990
3'(0.990)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20.5, cyto_nucl 14.5, mito 6, nucl 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007328)
HIX0007328
HIT000632060 (
ENST00000532973
)
(Conserved hypothetical protein.)
genome : 14,736,566 - 14,737,328 (763)
query : 1 - 312 (312/312)
2 exons
identity = 0.990
3'(1.000;0.956)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 23, extr 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007328)
AC022832.13
13500001-13551741 F -
NCBI
AC022880.10
13551742-13703541 F +
NCBI
AC022690.6
13703542-13852628 F -
NCBI
AC023538.7
13852629-14006320 F -
NCBI
AC022039.7
14006321-14100403 F +
NCBI
AC009898.6
14100404-14225207 F +
NCBI
AC107965.4
14225208-14272203 F -
NCBI
AC021760.9
14272204-14416783 F +
NCBI
AC040926.5
14416784-14610213 F +
NCBI
AC084838.7
14610214-14753319 F -
NCBI
AC106857.8
14753320-14906192 F +
NCBI
AC019215.4
14906193-15084238 F +
NCBI
AC020992.10
15084239-15100000 F +
NCBI