bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0007277
HIT000077780
(
AF333704
)
Representative transcript
(CUB and sushi domain-containing protein 1; CUB and sushi multiple domains protein 1; Precursor;)
genome : 2,795,621 - 4,852,328 (2,056,708)
query : 1 - 11,577 (11,577/11,580)
70 exons
identity = 0.998
3'(1.000)5'
coverage = 1.000
InterPro :
IPR000436 : Sushi/SCR/CCP domain
IPR000859 : CUB domain
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 21, extr_plas 13.5, extr 4, E.R. 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007277)
HIX0007277
HIT000083215
(
AY017307
)
(CUB and sushi domain-containing protein 1; CUB and sushi multiple domains protein 1; Precursor;)
genome : 2,795,621 - 4,852,223 (2,056,603)
query : 1 - 10,941 (10,941/10,944)
67 exons
identity = 0.998
3'(1.000)5'
coverage = 1.000
InterPro :
IPR000436 : Sushi/SCR/CCP domain
IPR000859 : CUB domain
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 21, extr_plas 13.5, extr 4, E.R. 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007277)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB179469
Mus
sp. (Mouse) : AY017475
Gallus
sp. (Chicken) : BX933326
Rattus
sp. (Rat) : DQ124115
Bos
sp. (Cow) : ENSBTAT00000027766
Canis
sp. (Dog) : ENSCAFT00000013885
Oryzias
sp. (Medaka) : ENSORLT00000012618
Pongo
sp. (Orangutan) : ENSPPYT00000021332
Tetraodon
sp. (Tetraodon) : GSTENT00025804001
Monodelphis
sp. (Opossum) : XM_001381517
Equus
sp. (Horse) : XM_001916722
Pan
sp. (Chimpanzee) : XR_025618
HIX0007277
HIT000619348 (
ENST00000520002
)
(CUB and sushi domain-containing protein 1; CUB and sushi multiple domains protein 1; Precursor;)
genome : 2,795,621 - 4,852,494 (2,056,874)
query : 1 - 11,740 (11,740/11,740)
70 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 21, extr_plas 13.5, extr 4, E.R. 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007277)
HIX0007277
HIT000714290 (
ENST00000602557
)
(CUB and sushi domain-containing protein 1; CUB and sushi multiple domains protein 1; Precursor;)
genome : 2,795,621 - 4,852,494 (2,056,874)
query : 1 - 11,740 (11,740/11,740)
70 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 21, extr_plas 13.5, extr 4, E.R. 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007277)
HIX0007277
HIT000483176 (
ENST00000400186
)
(CUB and sushi domain-containing protein 1 precursor.)
genome : 2,795,621 - 4,852,223 (2,056,603)
query : 1 - 10,938 (10,938/10,938)
67 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 21, extr_plas 13.5, extr 4, E.R. 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007277)
HIX0007277
HIT000714456 (
ENST00000602723
)
(CUB and sushi domain-containing protein 1 precursor.)
genome : 2,795,621 - 4,852,223 (2,056,603)
query : 1 - 10,938 (10,938/10,938)
67 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 21, extr_plas 13.5, extr 4, E.R. 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007277)
HIX0208500
HIT000616940_02 (
ENST00000517543
)
(SAICAR synthetase/ADE2, N-terminal domain containing protein.)
genome : 4,644,854 - 4,646,106 (1,253)
query : 1 - 1,253 (1,253/1,253)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, cyto 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0208500)
HIX0058521
HIT000340747
(
BC114566
)
Representative transcript
(Hypothetical protein.)
genome : 4,650,981 - 4,652,460 (1,480)
query : 10 - 1,491 (1,482/1,492)
1 exon
identity = 0.997
3'(0.997)5'
coverage = 0.993
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 14, cyto 10, cyto_nucl 10, nucl 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0058521)
HIX0208575
HIT000617895 (
ENST00000518519
)
(Conserved hypothetical protein.)
genome : 4,930,167 - 4,930,391 (225)
query : 1 - 225 (225/225)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, cyto 6, nucl 3, cyto_pero 3, cyto_plas 3,
cyto_golg 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0208575)
HIX0125191
HIT000469955 (
ENST00000383934
)
(Hypothetical short protein.)
genome : 4,985,801 - 4,985,934 (134)
query : 1 - 134 (134/134)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0125191)
HIX0208402
HIT000598502 (
ENST00000495129
)
(Ribosomal protein L25/L23 family protein.)
genome : 5,334,070 - 5,334,488 (419)
query : 1 - 419 (419/419)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, mito 9, extr 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0208402)
HIX0034574
HIT000096509
(
BC040995
)
Representative transcript
(Conserved hypothetical protein.)
genome : 5,363,590 - 5,366,648 (3,059)
query : 1 - 3,059 (3,059/3,074)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15, cyto 9, mito_nucl 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034574)
HIX0034574
HIT000617199 (
ENST00000517807
)
(Conserved hypothetical protein.)
genome : 5,363,590 - 5,366,648 (3,059)
query : 1 - 3,059 (3,059/3,059)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15, cyto 9, mito_nucl 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034574)
HIX0208611
HIT000618295 (
ENST00000518926
)
(Hypothetical short protein.)
genome : 5,517,201 - 5,527,599 (10,399)
query : 1 - 923 (923/923)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14.5, cyto_nucl 13, cyto 10.5, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0208611)
HIX0208741
HIT000620102 (
ENST00000520775
)
(Conserved hypothetical protein.)
genome : 5,706,219 - 5,707,214 (996)
query : 1 - 996 (996/996)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 19, cyto 6, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0208741)
HIX0168963
HIT000508649 (
ENST00000410657
)
(Hypothetical protein.)
genome : 5,768,467 - 5,768,758 (292)
query : 1 - 292 (292/292)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14.5, cyto_nucl 13.5, extr 10, cyto 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0168963)
HIX0208913
HIT000622374 (
ENST00000523090
)
(Non-protein coding transcript.)
genome : 5,893,955 - 5,894,496 (542)
query : 1 - 331 (331/331)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0208913)
HIX0218252
HIT000618905 (
ENST00000519555
)
(Conserved hypothetical protein.)
genome : 5,901,875 - 6,115,058 (213,184)
query : 1 - 574 (574/574)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218252)
AC022068.6
4500001-4622040 F +
NCBI
AC012543.4
4622041-4768400 F +
NCBI
AC103782.2
4768401-4818355 F -
NCBI
AC105998.4
4818356-4887355 F +
NCBI
AC019176.4
4887356-5008675 F +
NCBI
AC100856.3
5008676-5189237 F +
NCBI
AC007718.12
5189238-5268697 F -
NCBI
AC091193.6
5268698-5355291 F -
NCBI
AC004944.1
5355292-5471869 F +
NCBI
AC084768.4
5471870-5601149 F +
NCBI
AC087369.5
5601150-5751814 F -
NCBI
AC079054.6
5751815-5922192 F +
NCBI
AC009435.5
5922193-6048828 F +
NCBI
AC011727.16
6048829-6100000 F +
NCBI