bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0025817
HIT000047836
(
AK127963
)
Representative transcript
(H(+)/Cl(-) exchange transporter 3 isoform c.)
genome : 14,987,300 - 15,146,399 (159,100)
query : 1 - 1,945 (1,945/1,945)
10 exons
identity = 0.996
3'(1.000;1.000;0.992;1.000;1.000;0.958;1.000)5'
coverage = 1.000
InterPro :
IPR002245 : Chloride channel ClC-3
GO :
0005247 : Molecular Function : voltage-gated chloride channel activity
0006821 : Biological Process : chloride transport
0016020 : Cellular Component : membrane
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, cyto 7.5, cyto_nucl 6.5, nucl 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025817)
Ortholog candidate ( ->
Evola
)
Rattus
sp. (Rat) : AF142778
Mus
sp. (Mouse) : AK150688
Canis
sp. (Dog) : AM048628
Oryzias
sp. (Medaka) : ENSORLT00000009960
Tetraodon
sp. (Tetraodon) : GSTENT00005643001
Bos
sp. (Cow) : XM_865211
HIX0114937
HIT000603212 (
ENST00000502889
)
(Protein of unknown function DUF2228, C2H2, APLF-like family protein.)
genome : 14,993,310 - 15,019,727 (26,418)
query : 1 - 1,188 (1,188/1,188)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 22, extr 4, nucl 3, mito 3, mito_nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0114937)
HIX0114937
HIT000486419 (
NR_003920
)
(Protein of unknown function DUF2228, C2H2, APLF-like family protein.)
genome : 14,993,325 - 15,019,727 (26,403)
query : 1 - 928 (928/932)
5 exons
identity = 0.989
5'(1.000;1.000;0.992)3'
coverage = 0.996
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, cyto_nucl 10, extr 9, mito 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0114937)
HIX0114937
HIT000482885 (
ENST00000399862
)
(Protein of unknown function DUF2228, C2H2, APLF-like family protein.)
genome : 14,993,345 - 15,019,713 (26,369)
query : 1 - 1,143 (1,143/1,143)
8 exons
identity = 0.997
5'(1.000;0.961;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18.5, cyto_nucl 15.5, cyto 9.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0114937)
HIX0025817
HIT000521899 (
ENST00000423965
)
(H(+)/Cl(-) exchange transporter 3 isoform a.)
genome : 15,034,178 - 15,048,059 (13,882)
query : 1 - 1,000 (1,000/1,000)
4 exons
identity = 0.990
3'(1.000;0.984;0.972;0.975)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto_nucl 19.8333, cyto 17.5, nucl 12,
cyto_plas 10.3333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025817)
HIX0169762
HIT000520226 (
ENST00000422292
)
(Conserved hypothetical protein.)
genome : 15,055,055 - 15,056,050 (996)
query : 1 - 996 (996/996)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0169762)
HIX0007927
HIT000018853
(
AK093996
)
Representative transcript
(Conserved hypothetical protein.)
genome : 15,163,622 - 15,166,031 (2,410)
query : 1 - 2,410 (2,410/2,410)
1 exon
identity = 0.997
5'(0.997)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, cyto 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007927)
HIX0007927
HIT000004844
(
AK021570
)
(Conserved hypothetical protein.)
genome : 15,163,622 - 15,165,420 (1,799)
query : 1 - 1,790 (1,790/1,792)
1 exon
identity = 0.994
5'(0.994)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, cyto 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007927)
HIX0007928
HIT000213839 (
NM_152574
)
(Tetratricopeptide repeat protein 39B isoform 1.)
genome : 15,170,842 - 15,307,358 (136,517)
query : 1 - 3,261 (3,261/3,276)
20 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 10, mito 9.5, cyto_mito 7, plas 5, cyto 3.5,
golg 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007928)
HIX0007928
HIT000654534 (
NM_001168339
)
(Tetratricopeptide repeat protein 39B isoform 2.)
genome : 15,170,842 - 15,307,358 (136,517)
query : 1 - 3,255 (3,255/3,270)
20 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 10, mito 9.5, cyto_mito 7, plas 5, cyto 3.5,
golg 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007928)
HIX0007928
HIT000654535 (
NM_001168340
)
(Tetratricopeptide repeat protein 39B isoform 3.)
genome : 15,170,842 - 15,307,358 (136,517)
query : 1 - 3,222 (3,222/3,237)
19 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 10, mito 10, mito_nucl 10
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007928)
HIX0007928
HIT000654536 (
NM_001168341
)
(Tetratricopeptide repeat protein 39B isoform 4.)
genome : 15,170,842 - 15,307,358 (136,517)
query : 1 - 3,054 (3,054/3,069)
18 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 12.5, cyto_mito 8.5, nucl 7, plas 5, cyto 3.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007928)
HIX0007928
HIT000435479
(
BC142985
)
Representative transcript
(Tetratricopeptide repeat protein 39B isoform 2.)
genome : 15,170,842 - 15,307,337 (136,496)
query : 1 - 3,235 (3,235/3,250)
20 exons
identity = 0.997
3'(0.998;1.000;1.000;1.000;1.000;1.000;0.994;
1.000;1.000;1.000;1.000;1.000;1.000;0.985;
1.000;0.992;1.000;1.000;1.000;0.988)5'
coverage = 1.000
InterPro :
IPR011990 : Tetratricopeptide-like helical domain
IPR019412 : Outer membrane protein Iml2/Tetratricopeptide repeat protein 39
IPR019734 : Tetratricopeptide repeat
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 10, mito 9, plas 6, cyto_mito 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007928)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB071091
Mus
sp. (Mouse) : AK037208
Bos
sp. (Cow) : ENSBTAT00000048052
Equus
sp. (Horse) : ENSECAT00000029027
Oryzias
sp. (Medaka) : ENSORLT00000021462
Pongo
sp. (Orangutan) : ENSPPYT00000022390
Rattus
sp. (Rat) : ENSRNOT00000058615
Tetraodon
sp. (Tetraodon) : GSTENT00033440001
Takifugu
sp. (Fugu) : SINFRUT00000163630
Monodelphis
sp. (Opossum) : XM_001372797
Gallus
sp. (Chicken) : XM_424931
Pan
sp. (Chimpanzee) : XM_528545
Canis
sp. (Dog) : XM_531937
HIX0007928
HIT000654537 (
NM_001168342
)
(Tetratricopeptide repeat protein 39B isoform 5.)
genome : 15,170,842 - 15,250,198 (79,357)
query : 1 - 3,136 (3,136/3,151)
18 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, pero 10, plas 4, nucl 2, cysk_plas 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007928)
HIX0007928
HIT000114860 (
ENST00000297615
)
(Tetratricopeptide repeat protein 39B isoform 4.)
genome : 15,170,843 - 15,307,358 (136,516)
query : 1 - 3,053 (3,053/3,053)
18 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 12.5, cyto_mito 8.5, nucl 7, plas 5, cyto 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007928)
HIX0007928
HIT000309801 (
ENST00000355694
)
(Tetratricopeptide repeat protein 39B isoform 1.)
genome : 15,170,843 - 15,307,358 (136,516)
query : 1 - 3,260 (3,260/3,260)
20 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 10, mito 9.5, cyto_mito 7, plas 5, cyto 3.5,
golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007928)
HIX0007928
HIT000362128 (
ENST00000380850
)
(Tetratricopeptide repeat protein 39B isoform 3.)
genome : 15,170,843 - 15,307,358 (136,516)
query : 1 - 3,221 (3,221/3,221)
19 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 10, mito 10, mito_nucl 10
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007928)
HIX0007928
HIT000052055
(
BC038592
)
(Tetratricopeptide repeat protein 39B isoform 5.)
genome : 15,171,565 - 15,188,063 (16,499)
query : 48 - 1,370 (1,323/1,410)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 0.966
InterPro :
IPR011990 : Tetratricopeptide-like helical domain
IPR019412 : Outer membrane protein Iml2/Tetratricopeptide repeat protein 39
IPR019734 : Tetratricopeptide repeat
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 11, cyto 10, mito 5.5, extr_plas 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007928)
HIX0007928
HIT000612333 (
ENST00000512701
)
(Tetratricopeptide repeat protein 39B isoform 1.)
genome : 15,171,561 - 15,307,358 (135,798)
query : 1 - 2,542 (2,542/2,542)
20 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 10, mito 9.5, cyto_mito 7, plas 5, cyto 3.5,
golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007928)
HIX0007928
HIT000016054
(
AK091187
)
(Tetratricopeptide repeat protein 39B isoform 5.)
genome : 15,171,561 - 15,307,244 (135,684)
query : 1 - 2,428 (2,428/2,428)
20 exons
identity = 0.999
3'(0.996;1.000;1.000;1.000;1.000;1.000;0.994;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR011990 : Tetratricopeptide-like helical domain
IPR019412 : Outer membrane protein Iml2/Tetratricopeptide repeat protein 39
IPR019734 : Tetratricopeptide repeat
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16.5, cyto_nucl 10, plas 5, pero 4, nucl 2.5,
mito_pero 2.5, cysk_plas 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007928)
HIX0007928
HIT000362131 (
ENST00000380853
)
(Tetratricopeptide repeat protein 39B isoform 5.)
genome : 15,171,562 - 15,188,063 (16,502)
query : 1 - 1,326 (1,326/1,326)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 11, cyto 10, mito 5.5, extr_plas 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007928)
HIX0007928
HIT000493205
(
AK298581
)
(Tetratricopeptide repeat protein 39B isoform 4.)
genome : 15,171,675 - 15,307,213 (135,539)
query : 1 - 2,076 (2,076/2,076)
18 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;0.984;1.000;0.994;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR011990 : Tetratricopeptide-like helical domain
IPR019412 : Outer membrane protein Iml2/Tetratricopeptide repeat protein 39
IPR019734 : Tetratricopeptide repeat
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 11, nucl 5.5, plas 4, pero 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007928)
HIX0007928
HIT000097223
(
BC042417
)
(Tetratricopeptide repeat protein 39B isoform 2.)
genome : 15,171,916 - 15,232,408 (60,493)
query : 1 - 2,054 (2,054/2,107)
19 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;0.994;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR011990 : Tetratricopeptide-like helical domain
IPR019412 : Outer membrane protein Iml2/Tetratricopeptide repeat protein 39
IPR019734 : Tetratricopeptide repeat
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12, mito 8, cyto_nucl 8, plas 4, cyto 4,
E.R._mito 4, cyto_plas 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007928)
HIX0007928
HIT000493622
(
AK298998
)
(Tetratricopeptide repeat protein 39B isoform 3.)
genome : 15,171,917 - 15,307,330 (135,414)
query : 1 - 2,119 (2,119/2,119)
19 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;0.994;
1.000;1.000;0.985;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.996)5'
coverage = 1.000
InterPro :
IPR011990 : Tetratricopeptide-like helical domain
IPR019412 : Outer membrane protein Iml2/Tetratricopeptide repeat protein 39
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 10.5, cyto_nucl 8, mito 6, plas 5, cyto 4.5,
E.R. 2, pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007928)
HIX0007928
HIT000018326
(
AK093459
)
(Tetratricopeptide repeat protein 39B isoform 5.)
genome : 15,171,927 - 15,232,442 (60,516)
query : 1 - 2,238 (2,238/2,238)
20 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;1.000;0.989;0.981;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR011990 : Tetratricopeptide-like helical domain
IPR019412 : Outer membrane protein Iml2/Tetratricopeptide repeat protein 39
IPR019734 : Tetratricopeptide repeat
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 21, cyto 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007928)
HIX0007928
HIT000607284 (
ENST00000507285
)
(Tetratricopeptide repeat protein 39B isoform 5.)
genome : 15,171,927 - 15,232,442 (60,516)
query : 1 - 2,243 (2,243/2,243)
20 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, pero 10, plas 4, nucl 2, cysk_plas 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007928)
HIX0007928
HIT000496051
(
AK301427
)
(Tetratricopeptide repeat protein 39B isoform 2.)
genome : 15,171,944 - 15,250,114 (78,171)
query : 1 - 1,950 (1,950/1,950)
18 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;0.994;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR011990 : Tetratricopeptide-like helical domain
IPR019412 : Outer membrane protein Iml2/Tetratricopeptide repeat protein 39
IPR019734 : Tetratricopeptide repeat
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, pero 10, plas 4, nucl 2, cysk_plas 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007928)
HIX0007928
HIT000607953 (
ENST00000507993
)
(Tetratricopeptide repeat protein 39B isoform 5.)
genome : 15,171,944 - 15,250,114 (78,171)
query : 1 - 1,950 (1,950/1,950)
18 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, pero 10, plas 4, nucl 2, cysk_plas 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007928)
HIX0007928
HIT000429348
(
AK310482
)
(Tetratricopeptide repeat protein 39B; TPR repeat protein 39B;)
genome : 15,186,585 - 15,307,358 (120,774)
query : 1 - 1,881 (1,881/1,881)
15 exons
identity = 0.999
3'(1.000;0.994;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR011990 : Tetratricopeptide-like helical domain
IPR019412 : Outer membrane protein Iml2/Tetratricopeptide repeat protein 39
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 10, mito 10, mito_nucl 10
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007928)
HIX0007928
HIT000605842 (
ENST00000505732
)
(Tetratricopeptide repeat protein 39B; TPR repeat protein 39B;)
genome : 15,186,585 - 15,307,358 (120,774)
query : 1 - 1,881 (1,881/1,881)
15 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 10, mito 10, mito_nucl 10
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007928)
HIX0007928
HIT000429137
(
AK310271
)
(Tetratricopeptide repeat protein 39B isoform 5.)
genome : 15,188,093 - 15,273,702 (85,610)
query : 1 - 1,166 (1,166/1,166)
15 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;0.971;
1.000)5'
coverage = 1.000
InterPro :
IPR011990 : Tetratricopeptide-like helical domain
IPR019412 : Outer membrane protein Iml2/Tetratricopeptide repeat protein 39
GO :
0005515 : Molecular Function : protein binding
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, cyto_nucl 10.5, plas 6, pero 3,
extr_plas 3, cysk_plas 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007928)
HIX0007928
HIT000495809
(
AK301185
)
(Tetratricopeptide repeat protein 39B isoform 5.)
genome : 15,190,553 - 15,307,209 (116,657)
query : 1 - 927 (927/927)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR019412 : Outer membrane protein Iml2/Tetratricopeptide repeat protein 39
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14.5, nucl 13.5, cyto 12.5, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007928)
HIX0007928
HIT000640490 (
ENST00000541445
)
(Tetratricopeptide repeat protein 39B isoform 5.)
genome : 15,190,553 - 15,307,209 (116,657)
query : 1 - 927 (927/927)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14.5, nucl 13.5, cyto 12.5, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007928)
HIX0007928
HIT000694876 (
ENST00000582994
)
(Tetratricopeptide repeat protein 39B; TPR repeat protein 39B;)
genome : 15,214,136 - 15,232,442 (18,307)
query : 1 - 567 (567/567)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, nucl 11
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007928)
HIX0007928
HIT000264097
(
BC070139
)
(Tetratricopeptide repeat protein 39B isoform 3.)
genome : 15,249,040 - 15,307,207 (58,168)
query : 1 - 899 (899/930)
4 exons
identity = 0.996
3'(0.995;0.989;1.000;1.000)5'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14, cyto 12, extr 6, cyto_mito 6, cyto_pero 6,
cyto_plas 6, cyto_golg 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007928)
HIX0007928
HIT000606928 (
ENST00000506891
)
(Tetratricopeptide repeat protein 39B isoform 3.)
genome : 15,249,040 - 15,307,207 (58,168)
query : 1 - 900 (900/900)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 12.5, nucl 8.5, extr 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007928)
HIX0127045
HIT000542093 (
ENST00000444159
)
(Ribosomal protein L7, eukaryotic family protein.)
genome : 15,361,391 - 15,362,132 (742)
query : 1 - 742 (742/742)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 22.5, cyto_nucl 12, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0127045)
HIX0025738
HIT000362099 (
ENST00000380821
)
(snRNA-activating protein complex subunit 3; SNAPc subunit 3; Proximal sequence element-binding transcription factor subunit beta; PSE-binding factor subunit beta; PTF subunit beta; Small nuclear RNA-activating complex polypeptide 3; snRNA-activating protein complex 50 kDa subunit; SNAPc 50 kDa subunit;)
genome : 15,422,702 - 15,464,132 (41,431)
query : 1 - 5,680 (5,680/5,680)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 12, nucl 7.5, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025738)
HIX0025738
HIT000571684 (
ENST00000467062
)
(snRNA-activating protein complex subunit 3; SNAPc subunit 3; Proximal sequence element-binding transcription factor subunit beta; PSE-binding factor subunit beta; PTF subunit beta; Small nuclear RNA-activating complex polypeptide 3; snRNA-activating protein complex 50 kDa subunit; SNAPc 50 kDa subunit;)
genome : 15,422,732 - 15,465,951 (43,220)
query : 1 - 2,574 (2,574/2,574)
12 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 12, nucl 7.5, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025738)
HIX0025738
HIT000051593
(
BC036031
)
(snRNA-activating protein complex subunit 3; SNAPc subunit 3; Proximal sequence element-binding transcription factor subunit beta; PSE-binding factor subunit beta; PTF subunit beta; Small nuclear RNA-activating complex polypeptide 3; snRNA-activating protein complex 50 kDa subunit; SNAPc 50 kDa subunit;)
genome : 15,422,732 - 15,465,831 (43,100)
query : 1 - 2,452 (2,452/2,467)
12 exons
identity = 0.998
5'(1.000;1.000;1.000;1.000;1.000;0.964;1.000;
1.000;0.998;0.994;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR022042 : snRNA-activating protein complex, subunit 3
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 11.5, extr 8, nucl 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025738)
HIX0025738
HIT000366500 (
NM_001039697
)
(snRNA-activating protein complex subunit 3; SNAPc subunit 3; Proximal sequence element-binding transcription factor subunit beta; PSE-binding factor subunit beta; PTF subunit beta; Small nuclear RNA-activating complex polypeptide 3; snRNA-activating protein complex 50 kDa subunit; SNAPc 50 kDa subunit;)
genome : 15,422,782 - 15,461,627 (38,846)
query : 1 - 3,095 (3,095/3,095)
9 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 12, nucl 7.5, extr 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025738)
HIX0025738
HIT000221154
(
U71300
)
(snRNA-activating protein complex subunit 3; SNAPc subunit 3; Proximal sequence element-binding transcription factor subunit beta; PSE-binding factor subunit beta; PTF subunit beta; Small nuclear RNA-activating complex polypeptide 3; snRNA-activating protein complex 50 kDa subunit; SNAPc 50 kDa subunit;)
genome : 15,422,871 - 15,460,461 (37,591)
query : 8 - 1,848 (1,841/1,848)
9 exons
identity = 0.996
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.991)3'
coverage = 0.996
InterPro :
IPR022042 : snRNA-activating protein complex, subunit 3
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 12, nucl 7.5, extr 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025738)
HIX0025738
HIT000220940
(
U66413
)
Representative transcript
(snRNA-activating protein complex subunit 3; SNAPc subunit 3; Proximal sequence element-binding transcription factor subunit beta; PSE-binding factor subunit beta; PTF subunit beta; Small nuclear RNA-activating complex polypeptide 3; snRNA-activating protein complex 50 kDa subunit; SNAPc 50 kDa subunit;)
genome : 15,422,867 - 15,462,458 (39,592)
query : 1 - 2,520 (2,520/2,533)
10 exons
identity = 0.993
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.997;0.981)3'
coverage = 1.000
InterPro :
IPR022042 : snRNA-activating protein complex, subunit 3
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 12, nucl 7.5, extr 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025738)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB169044
Mus
sp. (Mouse) : AK019863
Danio
sp. (Zebrafish) : BC050516
Rattus
sp. (Rat) : BC091186
Bos
sp. (Cow) : BC109574
Canis
sp. (Dog) : ENSCAFT00000036657
Danio
sp. (Zebrafish) : ENSDART00000105184
Pongo
sp. (Orangutan) : ENSPPYT00000022389
Pan
sp. (Chimpanzee) : ENSPTRT00000047711
Tetraodon
sp. (Tetraodon) : GSTENT00033438001
Takifugu
sp. (Fugu) : SINFRUT00000132821
Gallus
sp. (Chicken) : XM_001231674
Monodelphis
sp. (Opossum) : XM_001372877
Equus
sp. (Horse) : XM_001495345
HIX0025738
HIT000594509 (
ENST00000490969
)
(snRNA-activating protein complex subunit 3; SNAPc subunit 3; Proximal sequence element-binding transcription factor subunit beta; PSE-binding factor subunit beta; PTF subunit beta; Small nuclear RNA-activating complex polypeptide 3; snRNA-activating protein complex 50 kDa subunit; SNAPc 50 kDa subunit;)
genome : 15,422,867 - 15,462,458 (39,592)
query : 1 - 2,524 (2,524/2,524)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 12, nucl 7.5, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025738)
HIX0025738
HIT000388208
(
BC121011
)
(snRNA-activating protein complex subunit 3; SNAPc subunit 3; Proximal sequence element-binding transcription factor subunit beta; PSE-binding factor subunit beta; PTF subunit beta; Small nuclear RNA-activating complex polypeptide 3; snRNA-activating protein complex 50 kDa subunit; SNAPc 50 kDa subunit;)
genome : 15,422,867 - 15,461,790 (38,924)
query : 1 - 1,856 (1,856/1,856)
10 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.998;1.000)3'
coverage = 1.000
InterPro :
IPR022042 : snRNA-activating protein complex, subunit 3
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 12, nucl 7.5, extr 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025738)
HIX0025738
HIT000388209
(
BC121012
)
(snRNA-activating protein complex subunit 3; SNAPc subunit 3; Proximal sequence element-binding transcription factor subunit beta; PSE-binding factor subunit beta; PTF subunit beta; Small nuclear RNA-activating complex polypeptide 3; snRNA-activating protein complex 50 kDa subunit; SNAPc 50 kDa subunit;)
genome : 15,422,867 - 15,461,790 (38,924)
query : 1 - 1,856 (1,856/1,856)
10 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.998;1.000)3'
coverage = 1.000
InterPro :
IPR022042 : snRNA-activating protein complex, subunit 3
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 12, nucl 7.5, extr 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025738)
HIX0025738
HIT000339147
(
BC108743
)
(snRNA-activating protein complex subunit 3; SNAPc subunit 3; Proximal sequence element-binding transcription factor subunit beta; PSE-binding factor subunit beta; PTF subunit beta; Small nuclear RNA-activating complex polypeptide 3; snRNA-activating protein complex 50 kDa subunit; SNAPc 50 kDa subunit;)
genome : 15,422,871 - 15,461,044 (38,174)
query : 1 - 2,423 (2,423/2,437)
9 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.998)3'
coverage = 1.000
InterPro :
IPR022042 : snRNA-activating protein complex, subunit 3
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 12, nucl 7.5, extr 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025738)
HIX0025738
HIT000487934
(
AK293310
)
(SnRNA-activating protein complex subunit 3.)
genome : 15,422,874 - 15,453,203 (30,330)
query : 1 - 814 (814/814)
7 exons
identity = 0.995
5'(1.000;0.942;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR022042 : snRNA-activating protein complex, subunit 3
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, cyto_nucl 11.3333, extr 9,
cyto_pero 7.33333, nucl 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025738)
HIX0025738
HIT000519644 (
ENST00000421710
)
(SnRNA-activating protein complex subunit 3.)
genome : 15,422,877 - 15,453,102 (30,226)
query : 1 - 730 (730/730)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17.5, extr 11, cyto_nucl 10.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025738)
HIX0025738
HIT000088527
(
BC014985
)
(SnRNA-activating protein complex subunit 3.)
genome : 15,422,879 - 15,462,198 (39,320)
query : 1 - 2,252 (2,252/2,288)
10 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.998;0.998)3'
coverage = 1.000
InterPro :
IPR022042 : snRNA-activating protein complex, subunit 3
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, extr 6, nucl 3, extr_plas 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025738)
HIX0025738
HIT000565947 (
ENST00000461041
)
(SnRNA-activating protein complex subunit 3.)
genome : 15,423,140 - 15,433,822 (10,683)
query : 1 - 403 (403/403)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 19, cyto 11.5, cyto_nucl 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025738)
HIX0209284
HIT000615428 (
ENST00000516025
)
(Non-protein coding transcript.)
genome : 15,431,897 - 15,432,004 (108)
query : 1 - 108 (108/108)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0209284)
HIX0025738
HIT000362077 (
ENST00000380799
)
(SnRNA-activating protein complex subunit 3.)
genome : 15,447,110 - 15,453,575 (6,466)
query : 1 - 753 (753/753)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto 10.5, cyto_nucl 8, extr_plas 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025738)
HIX0218424
HIT000057802
(
BX649155
)
Representative transcript
(Conserved hypothetical protein.)
genome : 15,464,582 - 15,472,689 (8,108)
query : 1 - 4,256 (4,256/4,276)
6 exons
identity = 0.996
3'(0.998;0.991;1.000;1.000;1.000;0.995)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 12, cyto 10, extr 9
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218424)
HIX0007930
HIT000007790
(
AK024516
)
Representative transcript
(Conserved hypothetical protein.)
genome : 15,466,900 - 15,468,122 (1,223)
query : 1 - 1,201 (1,201/1,217)
1 exon
identity = 0.980
5'(0.980)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, cyto 8.5, cyto_nucl 8, nucl 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007930)
HIX0007931
HIT000010169
(
AK026895
)
Representative transcript
(PC4 and SFRS1-interacting protein isoform 2.)
genome : 15,469,219 - 15,470,933 (1,715)
query : 4 - 1,716 (1,713/1,732)
1 exon
identity = 0.995
5'(0.995)3'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 22, cyto 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007931)
HIX0218424
HIT000021260
(
AK096405
)
(Conserved hypothetical protein.)
genome : 15,470,644 - 15,472,544 (1,901)
query : 1 - 1,900 (1,900/1,900)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218424)
HIX0218424
HIT000585821 (
ENST00000481862
)
(Conserved hypothetical protein.)
genome : 15,470,988 - 15,472,748 (1,761)
query : 1 - 306 (306/306)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218424)
HIX0218450
HIT000591069 (
ENST00000487363
)
(PWWP domain containing protein.)
genome : 15,485,901 - 15,510,287 (24,387)
query : 1 - 660 (660/660)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16, cyto 7, extr 5, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218450)
HIX0218450
HIT000568494 (
ENST00000463712
)
(PWWP domain containing protein.)
genome : 15,489,268 - 15,510,944 (21,677)
query : 1 - 730 (730/730)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 10, extr 8, cyto 7, mito 7, cyto_mito 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218450)
HIX0218450
HIT000592425 (
ENST00000488797
)
(PWWP domain containing protein.)
genome : 15,491,950 - 15,510,989 (19,040)
query : 1 - 736 (736/736)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, mito 9, extr 8, cyto_nucl 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218450)
HIX0218450
HIT000041975
(
BC033817
)
Representative transcript
(PWWP domain containing protein.)
genome : 15,504,977 - 15,510,987 (6,011)
query : 1 - 2,045 (2,045/2,069)
3 exons
identity = 0.999
3'(0.999;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000313 : PWWP domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, mito 11
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218450)
HIX0218450
HIT000588123 (
ENST00000484265
)
(PWWP domain containing protein.)
genome : 15,504,977 - 15,510,987 (6,011)
query : 1 - 2,045 (2,045/2,065)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, mito 11
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218450)
HIX0169169
HIT000530071 (
ENST00000432137
)
(Ferritin family protein.)
genome : 15,527,131 - 15,527,681 (551)
query : 1 - 551 (551/551)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 12.5, cyto_nucl 11.5, extr 10, nucl 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0169169)
HIX0126212
HIT000450230
(
DQ583699
)
Representative transcript
(Non-protein coding transcript.)
genome : 15,527,461 - 15,527,491 (31)
query : 1 - 31 (31/31)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0126212)
HIX0218464
HIT000427150
(
AK308284
)
Representative transcript
(Coiled-coil domain-containing protein 171;)
genome : 15,552,872 - 15,744,528 (191,657)
query : 1 - 2,529 (2,529/2,529)
17 exons
identity = 0.998
5'(0.989;1.000;1.000;1.000;1.000;0.992;1.000;
1.000;1.000;1.000;1.000;1.000;0.989;1.000;
1.000;0.995;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23.5, cyto_nucl 13.5, nucl 2.5, extr 2, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218464)
HIX0218464
HIT000054717
(
BX537933
)
(Coiled-coil domain-containing protein 171;)
genome : 15,552,895 - 15,660,144 (107,250)
query : 2 - 4,018 (4,017/4,047)
8 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.999)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 25, mito 3, nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218464)
HIX0218464
HIT000635013 (
ENST00000535968
)
(Conserved hypothetical protein.)
genome : 15,552,895 - 15,660,144 (107,250)
query : 1 - 4,017 (4,017/4,017)
8 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 25, mito 3, nucl 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218464)
HIX0218464
HIT000578490 (
ENST00000474193
)
(Hypothetical short protein.)
genome : 15,553,289 - 15,564,022 (10,734)
query : 1 - 363 (363/363)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14, cyto_nucl 14, cyto 10, extr 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218464)
HIX0170256
HIT000554736 (
ENST00000456802
)
(High mobility group nucleosome-binding domain-containing family protein.)
genome : 15,588,353 - 15,588,613 (261)
query : 1 - 261 (261/261)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0170256)
HIX0018920
HIT000091174
(
BC026063
)
(Coiled-coil domain-containing protein 171;)
genome : 15,744,632 - 15,874,729 (130,098)
query : 1 - 1,258 (1,258/1,276)
8 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;0.995;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, cyto_nucl 14, nucl 8, extr 2, lyso 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018920)
HIX0018920
HIT000019361
(
AK094506
)
(Conserved hypothetical protein.)
genome : 15,777,766 - 15,876,081 (98,316)
query : 1 - 2,181 (2,181/2,181)
6 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18, cyto 9.5, cyto_nucl 6, pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018920)
HIX0018920
HIT000530888 (
ENST00000432954
)
(Conserved hypothetical protein.)
genome : 15,777,766 - 15,876,081 (98,316)
query : 1 - 2,181 (2,181/2,181)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 18, cyto 9.5, cyto_nucl 6, pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018920)
HIX0018920
HIT000079687
(
AF440401
)
(Coiled-coil domain-containing protein 171;)
genome : 15,845,637 - 15,971,895 (126,259)
query : 1 - 838 (838/838)
6 exons
identity = 0.998
5'(0.968;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 15, nucl 11.5, extr 2, golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018920)
HIX0018920
HIT000574678 (
ENST00000470191
)
(Conserved hypothetical protein.)
genome : 15,845,637 - 15,971,895 (126,259)
query : 1 - 838 (838/838)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18.5, cyto_nucl 12, mito 6, cyto 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018920)
HIX0018920
HIT000601933 (
ENST00000498725
)
(Conserved hypothetical protein.)
genome : 15,850,224 - 15,971,733 (121,510)
query : 1 - 498 (498/498)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 12, nucl 10.5, cyto 8.5, extr 4, mito 4,
pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018920)
HIX0018920
HIT000027355
(
AL832443
)
Representative transcript
(Conserved hypothetical protein.)
genome : 15,874,539 - 16,061,660 (187,122)
query : 13 - 2,333 (2,321/2,382)
10 exons
identity = 0.999
5'(1.000;1.000;0.989;1.000;1.000;1.000;0.986;
1.000;1.000;0.999)3'
coverage = 0.995
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 11.1667, nucl 10, extr 9, cyto 6,
cyto_pero 5.5, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018920)
HIX0018920
HIT000590385 (
ENST00000486641
)
(Conserved hypothetical protein.)
genome : 15,874,539 - 16,061,661 (187,123)
query : 1 - 2,322 (2,322/2,322)
10 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14.5, nucl 13, cyto 10, extr 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018920)
HIX0018920
HIT000577168 (
ENST00000472806
)
(Non-protein coding transcript.)
genome : 15,887,793 - 15,920,332 (32,540)
query : 1 - 478 (478/478)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018920)
HIX0018920
HIT000096676
(
BC041404
)
(Conserved hypothetical protein.)
genome : 15,888,035 - 15,890,767 (2,733)
query : 6 - 1,844 (1,839/1,857)
2 exons
identity = 0.997
5'(0.962;0.998)3'
coverage = 0.997
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 14, nucl 13.5, cyto_nucl 9, cyto 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018920)
HIX0018920
HIT000097058
(
BC042022
)
(Conserved hypothetical protein.)
genome : 15,888,035 - 15,890,767 (2,733)
query : 1 - 1,839 (1,839/1,855)
2 exons
identity = 0.997
5'(0.962;0.998)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto_nucl 8, nucl 7, cyto 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018920)
HIX0018920
HIT000096370
(
BC040738
)
(Coiled-coil domain-containing protein 171;)
genome : 15,920,267 - 15,972,012 (51,746)
query : 51 - 610 (560/669)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 0.917
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, cyto_nucl 15, nucl 7, mito 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018920)
HIX0018920
HIT000582999 (
ENST00000478913
)
(Hypothetical short protein.)
genome : 16,042,796 - 16,061,318 (18,523)
query : 1 - 764 (764/764)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto_nucl 14.5, extr 6, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018920)
HIX0058633
HIT000727605 (
NR_073471
)
(Conserved hypothetical protein.)
genome : 16,203,933 - 16,276,311 (72,379)
query : 1 - 379 (379/392)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto 9, extr_plas 9
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0058633)
HIX0058633
HIT000725072 (
NM_001271829
)
(Conserved hypothetical protein.)
genome : 16,203,933 - 16,253,105 (49,173)
query : 1 - 364 (364/377)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto 14
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0058633)
HIX0058633
HIT000361963 (
ENST00000380685
)
(Conserved hypothetical protein.)
genome : 16,203,933 - 16,276,311 (72,379)
query : 1 - 379 (379/379)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto 9, extr_plas 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0058633)
HIX0058633
HIT000361961 (
ENST00000380683
)
(Conserved hypothetical protein.)
genome : 16,203,945 - 16,253,112 (49,168)
query : 1 - 359 (359/359)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, cyto 14
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0058633)
HIX0058633
HIT000531281 (
ENST00000433347
)
(Conserved hypothetical protein.)
genome : 16,203,946 - 16,215,897 (11,952)
query : 1 - 219 (219/219)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 26, cyto 2, mito 2, cyto_mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0058633)
HIX0007934
HIT000057148
(
BX648501
)
Representative transcript
(Putative uncharacterized protein C9orf92;)
genome : 16,212,442 - 16,219,227 (6,786)
query : 1 - 6,783 (6,783/6,804)
1 exon
identity = 0.995
5'(0.995)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19.5, cyto_nucl 11, mito 7, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007934)
HIX0007934
HIT000018845
(
AK093988
)
(Conserved hypothetical protein.)
genome : 16,216,806 - 16,219,226 (2,421)
query : 1 - 2,422 (2,422/2,422)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17.5, cyto_nucl 11.5, extr 7, cyto 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007934)
HIX0218384
HIT000055573
(
BX641030
)
(Conserved hypothetical protein.)
genome : 16,416,406 - 16,437,362 (20,957)
query : 1 - 5,051 (5,051/5,126)
2 exons
identity = 0.999
3'(0.998;0.999)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31, cyto_nucl 17
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218384)
HIX0218384
HIT000094733
(
BC037160
)
Representative transcript
(Conserved hypothetical protein.)
genome : 16,418,545 - 16,436,370 (17,826)
query : 1 - 2,072 (2,072/2,114)
6 exons
identity = 0.999
3'(0.983;0.999;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218384)
HIX0218384
HIT000509686 (
ENST00000411752
)
(Conserved hypothetical protein.)
genome : 16,418,541 - 16,436,370 (17,830)
query : 1 - 2,106 (2,106/2,106)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218384)
HIX0218384
HIT000002525
(
AK000050
)
(Conserved hypothetical protein.)
genome : 16,418,565 - 16,436,115 (17,551)
query : 1 - 1,668 (1,668/1,690)
2 exons
identity = 0.984
3'(0.976;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31.5, cyto_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218384)
HIX0218384
HIT000009156
(
AK025882
)
(Conserved hypothetical protein.)
genome : 16,418,578 - 16,435,860 (17,283)
query : 1 - 1,378 (1,378/1,405)
2 exons
identity = 0.999
3'(0.999;0.997)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218384)
HIX0218384
HIT000017114
(
AK092247
)
(Conserved hypothetical protein.)
genome : 16,418,579 - 16,437,061 (18,483)
query : 1 - 3,322 (3,322/3,322)
4 exons
identity = 0.996
3'(0.990;1.000;1.000;0.999)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31, cyto_nucl 17
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218384)
HIX0218384
HIT000499369
(
AK304745
)
(Conserved hypothetical protein.)
genome : 16,419,520 - 16,575,354 (155,835)
query : 1 - 2,481 (2,481/2,481)
5 exons
identity = 0.999
3'(1.000;1.000;0.999;1.000;0.991)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218384)
HIX0218384
HIT000393980
(
DQ884945
)
(Conserved hypothetical protein.)
genome : 16,419,603 - 16,435,728 (16,126)
query : 1 - 287 (287/287)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31.5, cyto_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218384)
HIX0218384
HIT000393981
(
DQ884946
)
(Conserved hypothetical protein.)
genome : 16,419,603 - 16,435,728 (16,126)
query : 1 - 255 (255/255)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31.5, cyto_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218384)
HIX0218384
HIT000393982
(
DQ884947
)
(Conserved hypothetical protein.)
genome : 16,421,260 - 16,435,728 (14,469)
query : 1 - 272 (272/276)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 0.986
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31, cyto_nucl 17
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218384)
HIX0218384
HIT000393983
(
DQ884948
)
(Conserved hypothetical protein.)
genome : 16,421,260 - 16,435,728 (14,469)
query : 1 - 276 (276/280)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 0.986
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 31.5, cyto_nucl 16.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218384)
HIX0025853
HIT000050154
(
AK130883
)
Representative transcript
(Hypothetical protein.)
genome : 16,424,469 - 16,426,173 (1,705)
query : 1 - 1,705 (1,705/1,705)
1 exon
identity = 0.998
3'(0.998)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025853)
HIX0169902
HIT000528574 (
ENST00000430640
)
(Hypothetical short protein.)
genome : 16,473,186 - 16,476,235 (3,050)
query : 1 - 414 (414/414)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 10.5, extr 10, cyto_nucl 10, nucl 6.5, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0169902)
HIX0007936
HIT000039017
(
BC020879
)
Representative transcript
(Conserved hypothetical protein.)
genome : 16,525,994 - 16,527,731 (1,738)
query : 1 - 1,738 (1,738/1,767)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 27, cyto 2, lyso 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007936)
HIX0125599
HIT000005069
(
AK021795
)
Representative transcript
(Conserved hypothetical protein.)
genome : 16,526,492 - 16,527,703 (1,212)
query : 1 - 1,212 (1,212/1,212)
1 exon
identity = 0.994
5'(0.994)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 18.1667, cyto 16, cyto_plas 10.5, nucl 8,
extr 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0125599)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : XM_001110501
HIX0007937
HIT000003573
(
AK001099
)
Representative transcript
(Conserved hypothetical protein.)
genome : 16,540,178 - 16,542,548 (2,371)
query : 1 - 2,372 (2,372/2,372)
1 exon
identity = 0.998
3'(0.998)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 15, extr 14
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007937)
HIX0218517
HIT000572766 (
ENST00000468187
)
(Zinc finger, SWIM-type domain containing protein.)
genome : 16,579,789 - 16,727,996 (148,208)
query : 1 - 663 (663/663)
3 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 28, nucl 2.5, cyto_nucl 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218517)
HIX0218517
HIT000575740 (
ENST00000471301
)
(Zinc finger, SWIM-type domain containing protein.)
genome : 16,579,835 - 16,705,080 (125,246)
query : 1 - 745 (745/745)
3 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 11, mito 10, cyto 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218517)
HIX0218517
HIT000393968
(
DQ884933
)
Representative transcript
(Zinc finger protein basonuclin-2.)
genome : 16,583,058 - 16,867,690 (284,633)
query : 1 - 687 (687/687)
4 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto_nucl 8.5, nucl 7.5, cyto 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218517)
HIX0218517
HIT000393969
(
DQ884934
)
(Zinc finger protein basonuclin-2.)
genome : 16,583,058 - 16,867,690 (284,633)
query : 1 - 561 (561/561)
3 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, cyto_nucl 8.5, nucl 7.5, cyto 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218517)
HIX0218517
HIT000393970
(
DQ884935
)
(Hypothetical short protein.)
genome : 16,583,058 - 16,867,690 (284,633)
query : 1 - 360 (360/360)
2 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218517)
HIX0218517
HIT000393977
(
DQ884942
)
(Non-protein coding transcript.)
genome : 16,583,058 - 16,714,975 (131,918)
query : 2 - 299 (298/299)
3 exons
identity = 1.000
3'(1.000)5'
coverage = 0.997
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218517)
HIX0218517
HIT000393978
(
DQ884943
)
(Non-protein coding transcript.)
genome : 16,583,058 - 16,714,975 (131,918)
query : 2 - 268 (267/268)
3 exons
identity = 1.000
3'(1.000)5'
coverage = 0.996
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218517)
HIX0218517
HIT000393971
(
DQ884936
)
(Hypothetical short protein.)
genome : 16,583,058 - 16,705,133 (122,076)
query : 1 - 520 (520/520)
3 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218517)
HIX0218517
HIT000393972
(
DQ884937
)
(Hypothetical short protein.)
genome : 16,583,058 - 16,705,133 (122,076)
query : 1 - 409 (409/409)
2 exons
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218517)
HIX0007932
HIT000211220 (
NM_033222
)
(PC4 and SFRS1-interacting protein; CLL-associated antigen KW-7; Dense fine speckles 70 kDa protein; DFS 70; Lens epithelium-derived growth factor; Transcriptional coactivator p75/p52;)
genome : 15,464,066 - 15,511,003 (46,938)
query : 1 - 3,375 (3,375/3,396)
16 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto_nucl 14.1667, cyto 7, cyto_golg 5.16667
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007932)
HIX0007932
HIT000559431 (
NM_001128217
)
(PC4 and SFRS1-interacting protein; CLL-associated antigen KW-7; Dense fine speckles 70 kDa protein; DFS 70; Lens epithelium-derived growth factor; Transcriptional coactivator p75/p52;)
genome : 15,464,066 - 15,511,003 (46,938)
query : 1 - 3,372 (3,372/3,393)
16 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto_nucl 14.1667, cyto 7, cyto_golg 5.16667
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007932)
HIX0007932
HIT000065263
(
AF063020
)
Representative transcript
(PC4 and SFRS1-interacting protein; CLL-associated antigen KW-7; Dense fine speckles 70 kDa protein; DFS 70; Lens epithelium-derived growth factor; Transcriptional coactivator p75/p52;)
genome : 15,464,066 - 15,510,982 (46,917)
query : 1 - 3,356 (3,356/3,377)
16 exons
identity = 0.998
3'(0.997;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.995;1.000)5'
coverage = 1.000
InterPro :
IPR000313 : PWWP domain
IPR017859 : Treacle-like, Treacher Collins Syndrome
IPR021567 : Lens epithelium-derived growth factor (LEDGF)
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto_nucl 14.1667, cyto 7, cyto_golg 5.16667
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007932)
Ortholog candidate ( ->
Evola
)
Rattus
sp. (Rat) : AF339084
Bos
sp. (Cow) : AF474175
Gallus
sp. (Chicken) : AJ719789
Mus
sp. (Mouse) : BC043079
Danio
sp. (Zebrafish) : BC095038
Equus
sp. (Horse) : DQ873682
Oryzias
sp. (Medaka) : ENSORLT00000021204
Pongo
sp. (Orangutan) : ENSPPYT00000022388
Tetraodon
sp. (Tetraodon) : GSTENT00033437001
Takifugu
sp. (Fugu) : SINFRUT00000155908
Monodelphis
sp. (Opossum) : XM_001366003
Pan
sp. (Chimpanzee) : XM_520495
Canis
sp. (Dog) : XM_531939
HIX0007932
HIT000222686
(
U94319
)
(PC4 and SFRS1-interacting protein isoform 2.)
genome : 15,464,066 - 15,478,552 (14,487)
query : 15 - 2,508 (2,494/2,525)
9 exons
identity = 0.995
3'(0.993;1.000;0.995;1.000;1.000;1.000;1.000;
0.996;1.000)5'
coverage = 0.994
InterPro :
IPR021567 : Lens epithelium-derived growth factor (LEDGF)
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, cyto 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007932)
HIX0007932
HIT000362011 (
ENST00000380733
)
(PC4 and SFRS1-interacting protein; CLL-associated antigen KW-7; Dense fine speckles 70 kDa protein; DFS 70; Lens epithelium-derived growth factor; Transcriptional coactivator p75/p52;)
genome : 15,464,064 - 15,511,017 (46,954)
query : 1 - 3,391 (3,391/3,391)
16 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto_nucl 14.1667, cyto 7, cyto_golg 5.16667
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007932)
HIX0007932
HIT000362016 (
ENST00000380738
)
(PC4 and SFRS1-interacting protein; CLL-associated antigen KW-7; Dense fine speckles 70 kDa protein; DFS 70; Lens epithelium-derived growth factor; Transcriptional coactivator p75/p52;)
genome : 15,464,064 - 15,510,993 (46,930)
query : 1 - 3,364 (3,364/3,364)
16 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto_nucl 14.1667, cyto 7, cyto_golg 5.16667
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007932)
HIX0007932
HIT000079606
(
AF432220
)
(PC4 and SFRS1-interacting protein; CLL-associated antigen KW-7; Dense fine speckles 70 kDa protein; DFS 70; Lens epithelium-derived growth factor; Transcriptional coactivator p75/p52;)
genome : 15,464,327 - 15,510,967 (46,641)
query : 3 - 3,076 (3,074/3,076)
16 exons
identity = 0.998
3'(0.998;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.980)5'
coverage = 0.999
InterPro :
IPR000313 : PWWP domain
IPR017859 : Treacle-like, Treacher Collins Syndrome
IPR021567 : Lens epithelium-derived growth factor (LEDGF)
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto_nucl 14.1667, cyto 7, cyto_golg 5.16667
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007932)
HIX0007932
HIT000068546
(
AF098483
)
(PC4 and SFRS1-interacting protein; CLL-associated antigen KW-7; Dense fine speckles 70 kDa protein; DFS 70; Lens epithelium-derived growth factor; Transcriptional coactivator p75/p52;)
genome : 15,464,789 - 15,510,210 (45,422)
query : 1 - 2,346 (2,346/2,346)
15 exons
identity = 0.997
3'(0.995;1.000;0.995;1.000;1.000;1.000;1.000;
0.996;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)5'
coverage = 1.000
InterPro :
IPR000313 : PWWP domain
IPR017859 : Treacle-like, Treacher Collins Syndrome
IPR021567 : Lens epithelium-derived growth factor (LEDGF)
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19, cyto_nucl 14.1667, cyto 7, cyto_golg 5.16667
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007932)
HIX0007932
HIT000097859
(
BC044568
)
(PC4 and SFRS1-interacting protein isoform 1.)
genome : 15,470,643 - 15,510,989 (40,347)
query : 3 - 1,958 (1,956/2,006)
11 exons
identity = 0.999
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 0.999
InterPro :
IPR000313 : PWWP domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto 4, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007932)
HIX0007932
HIT000068545
(
AF098482
)
(PC4 and SFRS1-interacting protein isoform 1.)
genome : 15,470,643 - 15,510,250 (39,608)
query : 14 - 1,650 (1,637/1,677)
10 exons
identity = 0.988
3'(0.970;1.000;0.996;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 0.992
InterPro :
IPR000313 : PWWP domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, cyto 4.5, mito 4, cyto_golg 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007932)
HIX0007932
HIT000261277
(
BC064135
)
(PC4 and SFRS1-interacting protein isoform 1.)
genome : 15,470,643 - 15,510,964 (40,322)
query : 1 - 1,817 (1,817/1,842)
11 exons
identity = 0.995
3'(0.986;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.993)5'
coverage = 1.000
InterPro :
IPR000313 : PWWP domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto 4, mito 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007932)
HIX0007932
HIT000208260 (
NM_021144
)
(PC4 and SFRS1-interacting protein isoform 1.)
genome : 15,470,643 - 15,510,287 (39,645)
query : 1 - 1,665 (1,665/1,690)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, cyto 4.5, mito 4, cyto_golg 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007932)
HIX0007932
HIT000361994 (
ENST00000380716
)
(PC4 and SFRS1-interacting protein isoform 1.)
genome : 15,470,643 - 15,510,992 (40,350)
query : 1 - 1,880 (1,880/1,889)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, cyto 4.5, mito 4, cyto_golg 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007932)
HIX0007932
HIT000361993 (
ENST00000380715
)
(PC4 and SFRS1-interacting protein isoform 1.)
genome : 15,470,643 - 15,510,989 (40,347)
query : 1 - 1,957 (1,957/1,966)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto 4, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007932)
HIX0007932
HIT000480798 (
ENST00000397519
)
(PC4 and SFRS1-interacting protein isoform 1.)
genome : 15,470,644 - 15,510,287 (39,644)
query : 1 - 1,664 (1,664/1,664)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, cyto 4.5, mito 4, cyto_golg 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007932)
HIX0007932
HIT000599221 (
ENST00000495873
)
(PC4 and SFRS1-interacting protein isoform 2.)
genome : 15,472,079 - 15,474,199 (2,121)
query : 1 - 863 (863/863)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 18, cyto 12
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007932)
HIX0007932
HIT000090720
(
BC022971
)
(PC4 and SFRS1-interacting protein isoform 1.)
genome : 15,474,088 - 15,510,985 (36,898)
query : 1 - 1,089 (1,089/1,103)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000313 : PWWP domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto 4, mito 4, cyto_mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007932)
HIX0007932
HIT000095969
(
BC040032
)
(PC4 and SFRS1-interacting protein isoform 1.)
genome : 15,474,088 - 15,510,949 (36,862)
query : 1 - 1,051 (1,051/1,065)
9 exons
identity = 0.998
3'(1.000;1.000;1.000;0.969;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000313 : PWWP domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14, cyto 8, extr 5, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007932)
HIX0007932
HIT000088025
(
BC013160
)
(PC4 and SFRS1-interacting protein isoform 1.)
genome : 15,474,133 - 15,510,954 (36,822)
query : 1 - 1,010 (1,010/1,029)
9 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;0.990;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
InterPro :
IPR000313 : PWWP domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21, cyto 4, mito 4, cyto_mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007932)
HIX0218733
HIT000307048
(
CR936775
)
(Coiled-coil domain-containing protein 171;)
genome : 15,553,005 - 15,974,031 (421,027)
query : 1 - 6,772 (6,772/6,792)
27 exons
identity = 0.999
5'(0.997;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.995;1.000;1.000;1.000;0.995;
0.995;1.000;1.000;1.000;1.000;0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, cyto_nucl 13, nucl 8, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218733)
HIX0218733
HIT000114868 (
ENST00000297641
)
(Coiled-coil domain-containing protein 171;)
genome : 15,553,005 - 15,883,161 (330,157)
query : 1 - 4,097 (4,097/4,097)
25 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21, cyto_nucl 15, nucl 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218733)
HIX0218733
HIT000361979 (
ENST00000380701
)
(Coiled-coil domain-containing protein 171;)
genome : 15,553,084 - 15,974,037 (420,954)
query : 1 - 6,512 (6,512/6,512)
26 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, cyto_nucl 15, nucl 8
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218733)
HIX0218733
HIT000214933 (
NM_173550
)
(Coiled-coil domain-containing protein 171;)
genome : 15,553,097 - 15,971,897 (418,801)
query : 1 - 4,359 (4,359/4,359)
26 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, cyto_nucl 15, nucl 8
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218733)
HIX0218733
HIT000254378
(
AY422473
)
Representative transcript
(Coiled-coil domain-containing protein 171;)
genome : 15,553,097 - 15,971,897 (418,801)
query : 1 - 4,359 (4,359/4,359)
26 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, cyto_nucl 15, nucl 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218733)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB070050
Mus
sp. (Mouse) : AK039282
Gallus
sp. (Chicken) : BX934228
Pongo
sp. (Orangutan) : ENSPPYT00000022387
Pan
sp. (Chimpanzee) : XM_001149040
Danio
sp. (Zebrafish) : XM_001336247
Monodelphis
sp. (Opossum) : XM_001372945
Equus
sp. (Horse) : XM_001494192
Rattus
sp. (Rat) : XM_342856
Canis
sp. (Dog) : XM_531940
Bos
sp. (Cow) : XM_618533
HIX0218733
HIT000502643
(
BC144214
)
(Coiled-coil domain-containing protein 171;)
genome : 15,563,995 - 15,971,875 (407,881)
query : 1 - 4,138 (4,138/4,138)
25 exons
identity = 1.000
5'(1.000;0.993;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.990;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 14.5, nucl 6.5, mito 2, pero 2,
mito_pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218733)
HIX0218733
HIT000503296
(
BC150600
)
(Coiled-coil domain-containing protein 171;)
genome : 15,563,995 - 15,971,875 (407,881)
query : 1 - 4,138 (4,138/4,138)
25 exons
identity = 1.000
5'(1.000;0.993;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.990;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 14.5, nucl 6.5, mito 2, pero 2,
mito_pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218733)
HIX0218733
HIT000048454
(
AK128581
)
(Coiled-coil domain-containing protein 171;)
genome : 15,723,676 - 15,974,034 (250,359)
query : 1 - 4,760 (4,760/4,760)
14 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.995;1.000;1.000;1.000;1.000;0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20, cyto_nucl 16, nucl 10
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218733)
HIX0218733
HIT000261606
(
BC064849
)
(Coiled-coil domain-containing protein 171;)
genome : 15,724,766 - 15,971,896 (247,131)
query : 6 - 2,564 (2,559/2,700)
13 exons
identity = 0.999
5'(0.990;1.000;1.000;1.000;1.000;1.000;1.000;
0.995;1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.998
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 20.5, cyto_nucl 17, nucl 10.5, cyto_mito 10.5,
cyto_plas 10.5, cyto_golg 10.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218733)
HIX0218733
HIT000021441
(
AK096586
)
(Coiled-coil domain-containing protein 171;)
genome : 15,744,473 - 15,886,803 (142,331)
query : 1 - 2,662 (2,662/2,662)
11 exons
identity = 0.998
5'(0.997;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.996)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 23, cyto_nucl 15.5, nucl 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218733)
HIX0218733
HIT000547509 (
ENST00000449575
)
(Coiled-coil domain-containing protein 171;)
genome : 15,744,503 - 15,886,803 (142,301)
query : 1 - 2,628 (2,628/2,628)
11 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 18, cyto_nucl 13, nucl 6, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218733)
HIX0007935
HIT000206519 (
NM_017637
)
(Zinc finger protein basonuclin-2;)
genome : 16,409,501 - 16,870,786 (461,286)
query : 1 - 12,926 (12,926/12,926)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007935)
HIX0007935
HIT000361950 (
ENST00000380672
)
(Zinc finger protein basonuclin-2;)
genome : 16,416,404 - 16,870,704 (454,301)
query : 1 - 5,941 (5,941/5,941)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007935)
HIX0007935
HIT000588563 (
ENST00000484726
)
(Zinc finger protein basonuclin-2;)
genome : 16,418,292 - 16,870,758 (452,467)
query : 1 - 4,841 (4,841/4,841)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007935)
HIX0007935
HIT000306831
(
CR933649
)
Representative transcript
(Zinc finger protein basonuclin-2.)
genome : 16,418,541 - 16,870,745 (452,205)
query : 1 - 3,773 (3,773/3,795)
7 exons
identity = 0.999
3'(1.000;1.000;0.998;1.000;1.000)5'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007935)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK030323
Danio
sp. (Zebrafish) : BC157380
Oryzias
sp. (Medaka) : ENSORLT00000008984
Pongo
sp. (Orangutan) : ENSPPYT00000022385
Pan
sp. (Chimpanzee) : ENSPTRT00000038476
Takifugu
sp. (Fugu) : SINFRUT00000155906
Rattus
sp. (Rat) : XM_001060986
Macaca
sp. (Macaque) : XM_001110334
Monodelphis
sp. (Opossum) : XM_001373200
Equus
sp. (Horse) : XM_001494292
Canis
sp. (Dog) : XM_848855
Gallus
sp. (Chicken) : XR_026912
HIX0007935
HIT000516711 (
ENST00000418777
)
(Zinc finger protein basonuclin-2.)
genome : 16,418,541 - 16,727,995 (309,455)
query : 1 - 3,673 (3,673/3,673)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007935)
HIX0007935
HIT000254702
(
AY438376
)
(Zinc finger protein basonuclin-2.)
genome : 16,418,578 - 16,727,909 (309,332)
query : 1 - 3,494 (3,494/3,494)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007935)
HIX0007935
HIT000249686
(
AK131398
)
(Zinc finger protein basonuclin-2;)
genome : 16,418,579 - 16,870,668 (452,090)
query : 1 - 3,740 (3,740/3,740)
7 exons
identity = 0.997
3'(0.990;0.999;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007935)
HIX0007935
HIT000361945 (
ENST00000380667
)
(Zinc finger protein basonuclin-2.)
genome : 16,418,808 - 16,870,729 (451,922)
query : 1 - 3,361 (3,361/3,361)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007935)
HIX0007935
HIT000493697
(
AK299073
)
(Zinc finger protein basonuclin-2;)
genome : 16,418,910 - 16,870,756 (451,847)
query : 1 - 3,267 (3,267/3,267)
6 exons
identity = 0.999
3'(1.000;0.999;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007935)
HIX0007935
HIT000644542 (
ENST00000545497
)
(Zinc finger protein basonuclin-2.)
genome : 16,418,987 - 16,832,286 (413,300)
query : 1 - 3,015 (3,015/3,015)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007935)
HIX0007935
HIT000361944 (
ENST00000380666
)
(Zinc finger protein basonuclin-2.)
genome : 16,429,925 - 16,870,786 (440,862)
query : 1 - 2,852 (2,852/2,852)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007935)
HIX0007935
HIT000393973
(
DQ884938
)
(Zinc finger protein basonuclin-2.)
genome : 16,437,074 - 16,870,665 (433,592)
query : 1 - 1,248 (1,248/1,248)
7 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22.5, cyto_nucl 15.5, cyto 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007935)
HIX0007935
HIT000393974
(
DQ884939
)
(Zinc finger protein basonuclin-2.)
genome : 16,437,074 - 16,870,665 (433,592)
query : 1 - 1,244 (1,244/1,244)
7 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23.5, cyto_nucl 19.5, cyto 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007935)
HIX0007935
HIT000393975
(
DQ884940
)
(Zinc finger protein basonuclin-2.)
genome : 16,437,074 - 16,870,665 (433,592)
query : 1 - 1,232 (1,232/1,232)
6 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 17, nucl 15.5, cyto 9.5, extr 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007935)
HIX0007935
HIT000393976
(
DQ884941
)
(Zinc finger protein basonuclin-2.)
genome : 16,437,074 - 16,870,665 (433,592)
query : 1 - 1,221 (1,221/1,221)
7 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21.5, cyto_nucl 15.5, cyto 8.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007935)
HIX0007935
HIT000393979
(
DQ884944
)
(Zinc finger protein basonuclin-2.)
genome : 16,437,223 - 16,728,163 (290,941)
query : 1 - 1,008 (1,008/1,008)
4 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 16.5, nucl 14, cyto 11, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007935)
HIX0007935
HIT000590265 (
ENST00000486514
)
(Zinc finger protein basonuclin-2.)
genome : 16,552,578 - 16,870,841 (318,264)
query : 1 - 688 (688/688)
4 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto 10.5, cyto_nucl 10, nucl 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007935)
AL592293.7
15000001-15073536 F +
NCBI
AL390958.15
15073537-15137327 F +
NCBI
AL591393.10
15137328-15310238 F +
NCBI
AL390246.17
15310239-15409992 F +
NCBI
AL441925.16
15409993-15466627 F +
NCBI
AL359998.21
15466628-15467864 F +
NCBI
AL513423.3
15467865-15636399 F -
NCBI
AL662788.7
15636400-15740762 F +
NCBI
AL359877.12
15740763-15902770 F +
NCBI
AL592153.6
15902771-16008904 F +
NCBI
AL160053.15
16008905-16181749 F +
NCBI
AL513424.3
16181750-16335493 F -
NCBI
AL449344.5
16335494-16393086 F +
NCBI
AL646003.5
16393087-16400214 F +
NCBI
AL449983.2
16400215-16596930 F -
NCBI
AL450003.2
16596931-16600000 F +
NCBI