bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0034765
HIT000094865
(
BC037528
)
(Conserved hypothetical protein.)
genome : 19,507,453 - 19,509,863 (2,411)
query : 2 - 2,413 (2,412/2,447)
1 exon
identity = 0.997
3'(0.997)5'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 28, nucl 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034765)
HIX0034765
HIT000207861 (
NM_020344
)
(Sodium/potassium/calcium exchanger 2; Na(+)/K(+)/Ca(2+)-exchange protein 2; Retinal cone Na-Ca+K exchanger; Solute carrier family 24 member 2;)
genome : 19,507,450 - 19,787,017 (279,568)
query : 1 - 10,840 (10,840/10,857)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034765)
HIX0034765
HIT000655781 (
NM_001193288
)
(Sodium/potassium/calcium exchanger 2 isoform 2.)
genome : 19,507,450 - 19,787,017 (279,568)
query : 1 - 10,789 (10,789/10,806)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034765)
HIX0034765
HIT000046965
(
AK127092
)
(Hypothetical protein.)
genome : 19,509,293 - 19,513,741 (4,449)
query : 1 - 4,441 (4,441/4,441)
1 exon
identity = 0.998
3'(0.998)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 31
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034765)
HIX0034765
HIT000068478
(
AF097366
)
Representative transcript
(Sodium/potassium/calcium exchanger 2; Na(+)/K(+)/Ca(2+)-exchange protein 2; Retinal cone Na-Ca+K exchanger; Solute carrier family 24 member 2;)
genome : 19,515,978 - 19,786,926 (270,949)
query : 1 - 2,221 (2,221/2,221)
10 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;0.990;1.000;
1.000;0.974;1.000)5'
coverage = 1.000
InterPro :
IPR004481 : Sodium/potassium/calcium exchanger
IPR004837 : Sodium/calcium exchanger membrane region
GO :
0016021 : Cellular Component : integral component of membrane
0055085 : Biological Process : transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034765)
Ortholog candidate ( ->
Evola
)
Rattus
sp. (Rat) : AF021923
Gallus
sp. (Chicken) : AF177985
Mus
sp. (Mouse) : AK083127
Oryzias
sp. (Medaka) : ENSORLT00000006138
Pongo
sp. (Orangutan) : ENSPPYT00000022371
Tetraodon
sp. (Tetraodon) : GSTENT00035821001
Takifugu
sp. (Fugu) : SINFRUT00000137198
Takifugu
sp. (Fugu) : SINFRUT00000173327
Takifugu
sp. (Fugu) : SINFRUT00000181856
Macaca
sp. (Macaque) : XM_001108751
Monodelphis
sp. (Opossum) : XM_001373197
Equus
sp. (Horse) : XM_001495010
Danio
sp. (Zebrafish) : XM_001921942
Pan
sp. (Chimpanzee) : XM_528551
Bos
sp. (Cow) : XM_603971
Canis
sp. (Dog) : XM_859803
HIX0034765
HIT000072736
(
AF177987
)
(Sodium/potassium/calcium exchanger 2 isoform 2.)
genome : 19,515,978 - 19,786,926 (270,949)
query : 1 - 2,170 (2,170/2,170)
9 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;0.990;1.000;
0.974;1.000)5'
coverage = 1.000
InterPro :
IPR004481 : Sodium/potassium/calcium exchanger
IPR004837 : Sodium/calcium exchanger membrane region
GO :
0016021 : Cellular Component : integral component of membrane
0055085 : Biological Process : transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034765)
HIX0034765
HIT000112711 (
ENST00000286344
)
(Sodium/potassium/calcium exchanger 2 isoform 2.)
genome : 19,515,978 - 19,786,926 (270,949)
query : 1 - 2,170 (2,170/2,170)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034765)
HIX0034765
HIT000134628 (
ENST00000341998
)
(Sodium/potassium/calcium exchanger 2; Na(+)/K(+)/Ca(2+)-exchange protein 2; Retinal cone Na-Ca+K exchanger; Solute carrier family 24 member 2;)
genome : 19,515,978 - 19,786,926 (270,949)
query : 1 - 2,221 (2,221/2,221)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034765)
HIX0034765
HIT000502330
(
BC143889
)
(Sodium/potassium/calcium exchanger 2 isoform 2.)
genome : 19,516,080 - 19,786,887 (270,808)
query : 1 - 2,029 (2,029/2,029)
9 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;0.990;1.000;
0.974;1.000)5'
coverage = 1.000
InterPro :
IPR004481 : Sodium/potassium/calcium exchanger
IPR004837 : Sodium/calcium exchanger membrane region
GO :
0016021 : Cellular Component : integral component of membrane
0055085 : Biological Process : transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034765)
HIX0034765
HIT000263773
(
BC069622
)
(Sodium/potassium/calcium exchanger 2; Na(+)/K(+)/Ca(2+)-exchange protein 2; Retinal cone Na-Ca+K exchanger; Solute carrier family 24 member 2;)
genome : 19,516,101 - 19,786,914 (270,814)
query : 1 - 2,086 (2,086/2,086)
10 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;0.990;1.000;
1.000;0.974;1.000)5'
coverage = 1.000
InterPro :
IPR004481 : Sodium/potassium/calcium exchanger
IPR004837 : Sodium/calcium exchanger membrane region
GO :
0016021 : Cellular Component : integral component of membrane
0055085 : Biological Process : transmembrane transport
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 32
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034765)
HIX0170105
HIT000544048 (
ENST00000446114
)
(Conserved hypothetical protein.)
genome : 19,705,336 - 19,705,653 (318)
query : 1 - 318 (318/318)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, nucl 8.5, extr_plas 8.5, cyto_nucl 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0170105)
HIX0034765
HIT000341056
(
DQ067463
)
(Hypothetical protein.)
genome : 19,786,910 - 19,788,808 (1,899)
query : 1 - 388 (388/388)
2 exons
identity = 0.997
3'(1.000;0.996)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto_nucl 8.5, nucl 6.5, cyto 5.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034765)
HIX0034765
HIT000341055
(
DQ067462
)
(Non-protein coding transcript.)
genome : 19,786,910 - 19,788,609 (1,700)
query : 1 - 188 (188/188)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034765)
HIX0034765
HIT000341057
(
DQ067464
)
(Hypothetical short protein.)
genome : 19,786,910 - 19,788,103 (1,194)
query : 1 - 300 (300/300)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11.5, extr 10, cyto_nucl 9.5, cyto 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034765)
HIX0218625
HIT000484235_08 (
ENST00000401371
)
(Non-protein coding transcript.)
genome : 19,829,751 - 19,829,845 (95)
query : 1 - 95 (95/95)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218625)
HIX0025716
HIT000681051 (
ENST00000568063
)
(Conserved hypothetical protein.)
genome : 19,926,092 - 19,929,935 (3,844)
query : 1 - 3,844 (3,844/3,844)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 19.5, cyto_mito 13, extr 5, cyto 5,
cyto_nucl 4.83333
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025716)
HIX0025716
HIT000043729
(
AK123856
)
Representative transcript
(Conserved hypothetical protein.)
genome : 19,926,278 - 19,929,622 (3,345)
query : 1 - 3,347 (3,347/3,347)
1 exon
identity = 0.998
5'(0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14.5, cyto_nucl 10.1667, extr 10,
mito_nucl 9.33333, cyto 4.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025716)
HIX0025716
HIT000056780
(
BX648133
)
(Conserved hypothetical protein.)
genome : 19,926,914 - 19,929,933 (3,020)
query : 1 - 3,020 (3,020/3,041)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 0.999
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 14, cyto_nucl 7.16667, extr 5, nucl 5, cyto 5,
cyto_pero 4.33333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025716)
HIX0169593
HIT000506874 (
ENST00000408817
)
(Non-protein coding transcript.)
genome : 20,295,002 - 20,295,086 (85)
query : 1 - 85 (85/85)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0169593)
HIX0007949
HIT000021405
(
AK096550
)
Representative transcript
(Survival motor neuron protein isoform c.)
genome : 20,330,163 - 20,332,553 (2,391)
query : 1 - 2,391 (2,391/2,391)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
InterPro :
IPR010304 : Survival motor neuron
GO :
0003723 : Molecular Function : RNA binding
0005634 : Cellular Component : nucleus
0005737 : Cellular Component : cytoplasm
0006397 : Biological Process : mRNA processing
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 11, extr 9, nucl 8, cyto 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007949)
Ortholog candidate ( ->
Evola
)
Pongo
sp. (Orangutan) : ENSPPYT00000022370
Pan
sp. (Chimpanzee) : XR_021136
HIX0007949
HIT000511990 (
ENST00000414056
)
(Survival motor neuron protein isoform a.)
genome : 20,331,444 - 20,332,275 (832)
query : 1 - 832 (832/832)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 11, extr 9, nucl 8, cyto 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007949)
HIX0025733
HIT000361617 (
ENST00000380338
)
(Protein AF-9; ALL1-fused gene from chromosome 9 protein; Myeloid/lymphoid or mixed-lineage leukemia translocated to chromosome 3 protein; YEATS domain-containing protein 3;)
genome : 20,341,663 - 20,622,542 (280,880)
query : 1 - 6,772 (6,772/6,772)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24.5, cyto_nucl 16, cyto 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025733)
HIX0025733
HIT000201274 (
NM_004529
)
(Protein AF-9; ALL1-fused gene from chromosome 9 protein; Myeloid/lymphoid or mixed-lineage leukemia translocated to chromosome 3 protein; YEATS domain-containing protein 3;)
genome : 20,344,968 - 20,622,514 (277,547)
query : 1 - 3,439 (3,439/3,439)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24.5, cyto_nucl 16, cyto 6.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025733)
HIX0025733
HIT000310003 (
ENST00000355930
)
(Protein AF-9; ALL1-fused gene from chromosome 9 protein; Myeloid/lymphoid or mixed-lineage leukemia translocated to chromosome 3 protein; YEATS domain-containing protein 3;)
genome : 20,344,968 - 20,622,514 (277,547)
query : 1 - 3,367 (3,367/3,367)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24.5, cyto_nucl 16, cyto 6.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025733)
HIX0025733
HIT000192215
(
L13744
)
Representative transcript
(Protein AF-9; ALL1-fused gene from chromosome 9 protein; Myeloid/lymphoid or mixed-lineage leukemia translocated to chromosome 3 protein; YEATS domain-containing protein 3;)
genome : 20,344,968 - 20,622,450 (277,483)
query : 1 - 3,376 (3,376/3,376)
11 exons
identity = 0.999
3'(0.999;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.994;1.000)5'
coverage = 1.000
InterPro :
IPR005033 : YEATS
GO :
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto_nucl 15.5, cyto 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025733)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : BC021420
Danio
sp. (Zebrafish) : BC092798
Bos
sp. (Cow) : BC126526
Equus
sp. (Horse) : ENSECAT00000025395
Oryzias
sp. (Medaka) : ENSORLT00000015221
Pongo
sp. (Orangutan) : ENSPPYT00000022369
Takifugu
sp. (Fugu) : SINFRUT00000182078
Macaca
sp. (Macaque) : XM_001108646
Pan
sp. (Chimpanzee) : XM_001148491
Monodelphis
sp. (Opossum) : XM_001364482
Gallus
sp. (Chicken) : XM_424818
Canis
sp. (Dog) : XM_538677
HIX0025733
HIT000057841
(
BX649194
)
(Protein AF-9.)
genome : 20,345,068 - 20,622,517 (277,450)
query : 1 - 3,342 (3,342/3,360)
11 exons
identity = 0.998
3'(0.999;1.000;1.000;1.000;0.992;1.000;0.996;
0.993;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR005033 : YEATS
GO :
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24.5, cyto_nucl 16, cyto 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025733)
HIX0025733
HIT000361602 (
ENST00000380323
)
(Protein AF-9.)
genome : 20,345,075 - 20,382,485 (37,411)
query : 1 - 1,983 (1,983/1,983)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 15, cyto 12.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025733)
HIX0025733
HIT000100611
(
D16688
)
(Protein AF-9.)
genome : 20,345,985 - 20,414,166 (68,182)
query : 1 - 1,486 (1,486/1,486)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR005033 : YEATS
GO :
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28, cyto 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025733)
HIX0025733
HIT000496098
(
AK301474
)
(Protein AF-9.)
genome : 20,346,197 - 20,621,872 (275,676)
query : 1 - 2,040 (2,040/2,040)
11 exons
identity = 1.000
3'(0.997;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR005033 : YEATS
GO :
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23.5, cyto_nucl 16, cyto 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025733)
HIX0025733
HIT000527360 (
ENST00000429426
)
(Protein AF-9.)
genome : 20,346,197 - 20,621,872 (275,676)
query : 1 - 2,040 (2,040/2,040)
11 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 23.5, cyto_nucl 16, cyto 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025733)
HIX0025733
HIT000051619
(
BC036089
)
(Protein AF-9; ALL1-fused gene from chromosome 9 protein; Myeloid/lymphoid or mixed-lineage leukemia translocated to chromosome 3 protein; YEATS domain-containing protein 3;)
genome : 20,346,290 - 20,622,505 (276,216)
query : 1 - 2,109 (2,109/2,124)
11 exons
identity = 0.999
3'(0.993;1.000;1.000;1.000;1.000;1.000;0.999;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR005033 : YEATS
GO :
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24.5, cyto_nucl 16, cyto 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025733)
HIX0025733
HIT000573791 (
ENST00000469261
)
(Protein AF-9.)
genome : 20,346,291 - 20,363,567 (17,277)
query : 1 - 476 (476/476)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17.5, cyto_nucl 10.5, extr 7, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025733)
HIX0025733
HIT000592339 (
ENST00000488705
)
(Protein AF-9.)
genome : 20,346,351 - 20,382,469 (36,119)
query : 1 - 457 (457/457)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 14.5, cyto 12, cyto_plas 9, extr 8,
nucl 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025733)
HIX0025733
HIT000385087
(
AK225957
)
(Protein AF-9; ALL1-fused gene from chromosome 9 protein; Myeloid/lymphoid or mixed-lineage leukemia translocated to chromosome 3 protein; YEATS domain-containing protein 3;)
genome : 20,346,376 - 20,622,477 (276,102)
query : 1 - 1,991 (1,991/1,991)
11 exons
identity = 0.997
3'(0.990;1.000;1.000;1.000;1.000;1.000;0.996;
1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR005033 : YEATS
GO :
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24.5, cyto_nucl 16, cyto 6.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025733)
HIX0025733
HIT000492211
(
AK297587
)
(YEATS family protein.)
genome : 20,346,392 - 20,621,160 (274,769)
query : 1 - 2,070 (2,070/2,070)
10 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;0.998)5'
coverage = 1.000
InterPro :
IPR005033 : YEATS
GO :
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 21.5, cyto_nucl 16, cyto 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025733)
HIX0025733
HIT000361600 (
ENST00000380321
)
(Protein AF-9.)
genome : 20,346,404 - 20,382,467 (36,064)
query : 1 - 708 (708/708)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 15, cyto 13.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025733)
HIX0025733
HIT000431780
(
AK312914
)
(Protein AF-9; ALL1-fused gene from chromosome 9 protein; Myeloid/lymphoid or mixed-lineage leukemia translocated to chromosome 3 protein; YEATS domain-containing protein 3;)
genome : 20,346,441 - 20,622,434 (275,994)
query : 2 - 1,887 (1,886/1,887)
11 exons
identity = 0.998
3'(1.000;0.986;1.000;1.000;0.992;1.000;1.000;
1.000;1.000;0.994;1.000)5'
coverage = 0.999
InterPro :
IPR005033 : YEATS
GO :
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 22, cyto_nucl 15.5, cyto 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025733)
HIX0025733
HIT000573077 (
ENST00000468513
)
(Protein AF-9.)
genome : 20,360,740 - 20,411,960 (51,221)
query : 1 - 563 (563/563)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14.5, cyto_nucl 13, cyto 10.5, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025733)
HIX0025733
HIT000594673 (
ENST00000491137
)
(Protein AF-9.)
genome : 20,360,751 - 20,382,450 (21,700)
query : 1 - 488 (488/488)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15, cyto 10, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025733)
HIX0025733
HIT000092145
(
BC030550
)
(Protein AF-9.)
genome : 20,362,726 - 20,622,439 (259,714)
query : 1 - 2,036 (2,036/2,059)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR005033 : YEATS
GO :
0005634 : Cellular Component : nucleus
0006355 : Biological Process : regulation of transcription, DNA-templated
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19.5, cyto_nucl 18.5, cyto 12.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025733)
HIX0025733
HIT000580174 (
ENST00000475957
)
(Protein AF-9.)
genome : 20,362,726 - 20,622,439 (259,714)
query : 1 - 2,036 (2,036/2,059)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 19.5, cyto_nucl 18.5, cyto 12.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025733)
HIX0218569
HIT000695609 (
ENST00000583731
)
(Non-protein coding transcript.)
genome : 20,411,146 - 20,411,236 (91)
query : 1 - 91 (91/91)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218569)
HIX0218569
HIT000725747 (
NR_039684
)
(Non-protein coding transcript.)
genome : 20,411,146 - 20,411,236 (91)
query : 1 - 91 (91/91)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218569)
HIX0169596
HIT000508281 (
ENST00000410270
)
(Non-protein coding transcript.)
genome : 20,418,319 - 20,418,425 (107)
query : 1 - 107 (107/107)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0169596)
HIX0025733
HIT000048095
(
AK128222
)
(Protein AF-9.)
genome : 20,455,949 - 20,458,966 (3,018)
query : 1 - 3,019 (3,019/3,020)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 12, cyto 8.5, cyto_nucl 8.33333, nucl 6,
extr_plas 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025733)
HIX0218554
HIT000691120 (
ENST00000579189
)
(Non-protein coding transcript.)
genome : 20,502,263 - 20,502,340 (78)
query : 1 - 78 (78/78)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218554)
HIX0218554
HIT000725748 (
NR_039685
)
(Non-protein coding transcript.)
genome : 20,502,263 - 20,502,340 (78)
query : 1 - 78 (78/78)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0218554)
HIX0025839
HIT000048932
(
AK129661
)
Representative transcript
(Conserved hypothetical protein.)
genome : 20,514,525 - 20,516,339 (1,815)
query : 1 - 1,815 (1,815/1,815)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, cyto 6, nucl 4, cyto_mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025839)
HIX0170087
HIT000542829 (
ENST00000444895
)
(50S ribosomal protein L30e-like domain containing protein.)
genome : 20,532,550 - 20,533,337 (788)
query : 1 - 788 (788/788)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, cyto 7, mito 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0170087)
HIX0007950
HIT000361528 (
ENST00000380249
)
(Focadhesin.)
genome : 20,658,308 - 20,995,954 (337,647)
query : 1 - 6,096 (6,096/6,096)
46 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 26, E.R. 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007950)
HIX0007950
HIT000013136
(
AK056522
)
(Focadhesin.)
genome : 20,658,308 - 20,912,893 (254,586)
query : 1 - 3,111 (3,111/3,111)
25 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.996;1.000;
1.000;1.000;1.000;1.000;1.000;0.988;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR022542 : Domain of unknown function DUF3730
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007950)
HIX0007950
HIT000084714
(
AY139834
)
Representative transcript
(Focadhesin.)
genome : 20,658,309 - 20,995,954 (337,646)
query : 1 - 6,095 (6,095/6,117)
46 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.996;1.000;
1.000;1.000;1.000;1.000;1.000;0.988;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.992;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.990;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR021392 : Protein of unknown function DUF3028
IPR022542 : Domain of unknown function DUF3730
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 27, E.R. 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007950)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB172383
Mus
sp. (Mouse) : BC089005
Danio
sp. (Zebrafish) : ENSDART00000101543
Oryzias
sp. (Medaka) : ENSORLT00000015197
Pongo
sp. (Orangutan) : ENSPPYT00000022368
Pan
sp. (Chimpanzee) : ENSPTRT00000056647
Tetraodon
sp. (Tetraodon) : GSTENT00008954001
Takifugu
sp. (Fugu) : SINFRUT00000139918
Monodelphis
sp. (Opossum) : XM_001364553
Equus
sp. (Horse) : XM_001496721
Rattus
sp. (Rat) : XM_233144
Canis
sp. (Dog) : XM_538678
HIX0007950
HIT000206660 (
NM_017794
)
(Focadhesin.)
genome : 20,658,309 - 20,995,954 (337,646)
query : 1 - 6,095 (6,095/6,117)
46 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 26, E.R. 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007950)
HIX0169298
HIT000537810 (
ENST00000439876
)
(Hypothetical short protein.)
genome : 20,683,303 - 20,684,687 (1,385)
query : 1 - 359 (359/359)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, extr 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0169298)
HIX0169298
HIT000542985 (
ENST00000445051
)
(Hypothetical short protein.)
genome : 20,683,388 - 20,683,937 (550)
query : 1 - 217 (217/217)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 20, extr 9
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0169298)
HIX0007950
HIT000131012 (
ENST00000338382
)
(Focadhesin.)
genome : 20,715,353 - 20,995,947 (280,595)
query : 1 - 5,725 (5,725/5,725)
43 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.965;0.961;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 26, E.R. 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007950)
HIX0153182
HIT000470833 (
ENST00000384877
)
(Non-protein coding transcript.)
genome : 20,716,104 - 20,716,187 (84)
query : 1 - 84 (84/84)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0153182)
HIX0153182
HIT000658187 (
NR_030166
)
(Non-protein coding transcript.)
genome : 20,716,104 - 20,716,187 (84)
query : 1 - 84 (84/84)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0153182)
HIX0125636
HIT000346908 (
ENST00000365319
)
(Non-protein coding transcript.)
genome : 20,786,926 - 20,787,054 (129)
query : 1 - 129 (129/129)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0125636)
HIX0007950
HIT000001512
(
AB058700
)
(Focadhesin.)
genome : 20,820,293 - 20,995,947 (175,655)
query : 1 - 4,195 (4,195/4,195)
32 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;1.000;0.988;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.992;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.990;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 28, extr 1, nucl 1, E.R. 1, pero 1
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007950)
HIX0018870
HIT000016480
(
AK091613
)
Representative transcript
(Conserved hypothetical protein.)
genome : 20,825,869 - 20,828,151 (2,283)
query : 1 - 2,283 (2,283/2,283)
1 exon
identity = 0.998
5'(0.998)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 27, cyto 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0018870)
HIX0007950
HIT000005688
(
AK022414
)
(Focadhesin.)
genome : 20,873,842 - 20,875,814 (1,973)
query : 1 - 1,975 (1,975/1,975)
1 exon
identity = 0.998
5'(0.998)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 27, extr_plas 15.5, extr 2, E.R. 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007950)
HIX0007950
HIT000011730
(
AK055116
)
(Focadhesin.)
genome : 20,881,882 - 20,995,952 (114,071)
query : 2 - 3,402 (3,401/3,402)
25 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.996;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR021392 : Protein of unknown function DUF3028
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007950)
HIX0007950
HIT000249981
(
AK172818
)
(Focadhesin.)
genome : 20,929,357 - 20,995,952 (66,596)
query : 2 - 2,653 (2,652/2,680)
18 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.990;1.000;1.000;1.000)3'
coverage = 0.999
InterPro :
IPR021392 : Protein of unknown function DUF3028
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 28, E.R. 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007950)
HIX0007950
HIT000030254
(
BC001246
)
(Focadhesin.)
genome : 20,949,623 - 20,995,948 (46,326)
query : 1 - 1,830 (1,830/1,866)
12 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;0.991;1.000;1.000;
1.000;0.990;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR021392 : Protein of unknown function DUF3028
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr_plas 10, plas 9.5, extr 9.5, mito 4, pero 4,
mito_pero 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007950)
HIX0007950
HIT000002857
(
AK000382
)
(Focadhesin.)
genome : 20,949,639 - 20,995,948 (46,310)
query : 1 - 1,812 (1,812/1,828)
12 exons
identity = 0.998
5'(1.000;1.000;0.988;1.000;1.000;1.000;1.000;
1.000;0.969;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 19.5, mito_pero 10.5, extr 7, nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007950)
HIX0007950
HIT000384613
(
AK225483
)
(Focadhesin.)
genome : 20,949,639 - 20,995,948 (46,310)
query : 1 - 1,812 (1,812/1,828)
12 exons
identity = 0.998
5'(1.000;1.000;0.988;1.000;1.000;1.000;1.000;
1.000;0.969;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR021392 : Protein of unknown function DUF3028
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 19.5, mito_pero 10.5, extr 7, nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007950)
HIX0007950
HIT000026513
(
AL512738
)
(Focadhesin.)
genome : 20,990,210 - 20,995,948 (5,739)
query : 1 - 634 (634/654)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR021392 : Protein of unknown function DUF3028
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 24, cyto 7
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0007950)
HIX0025749
HIT000049559
(
AK130288
)
(Hypothetical protein.)
genome : 20,993,494 - 20,995,359 (1,866)
query : 1 - 1,866 (1,866/1,866)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 13.5, extr 11, cyto_nucl 9, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025749)
HIX0025749
HIT000340640
(
BC114215
)
Representative transcript
(Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase 4; EC=4.2.1.134; 3-hydroxyacyl-CoA dehydratase 4; HACD4; Protein tyrosine phosphatase-like protein PTPLAD2; Protein-tyrosine phosphatase-like A domain-containing protein 2;)
genome : 20,995,305 - 21,031,608 (36,304)
query : 1 - 2,135 (2,135/2,217)
9 exons
identity = 0.998
3'(0.994;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
InterPro :
IPR007482 : Protein-tyrosine phosphatase-like, PTPLA
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 18.5, cyto_mito 13.5, cyto 7.5, extr 2, nucl 2,
pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025749)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK039344
Danio
sp. (Zebrafish) : BC097204
Bos
sp. (Cow) : BC120231
Tetraodon
sp. (Tetraodon) : CR732483
Oryzias
sp. (Medaka) : ENSORLT00000015114
Pongo
sp. (Orangutan) : ENSPPYT00000022367
Rattus
sp. (Rat) : ENSRNOT00000008199
Macaca
sp. (Macaque) : XM_001099778
Pan
sp. (Chimpanzee) : XM_001148626
Monodelphis
sp. (Opossum) : XM_001373372
Equus
sp. (Horse) : XM_001495346
Gallus
sp. (Chicken) : XM_424816
Canis
sp. (Dog) : XM_848993
HIX0025749
HIT000612876 (
ENST00000513293
)
(Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase 4; EC=4.2.1.134; 3-hydroxyacyl-CoA dehydratase 4; HACD4; Protein tyrosine phosphatase-like protein PTPLAD2; Protein-tyrosine phosphatase-like A domain-containing protein 2;)
genome : 20,995,306 - 21,031,608 (36,303)
query : 1 - 2,131 (2,131/2,131)
9 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 18.5, cyto_mito 13.5, cyto 7.5, extr 2, nucl 2,
pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025749)
HIX0025749
HIT000054836
(
BX538052
)
(Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase 4; EC=4.2.1.134; 3-hydroxyacyl-CoA dehydratase 4; HACD4; Protein tyrosine phosphatase-like protein PTPLAD2; Protein-tyrosine phosphatase-like A domain-containing protein 2;)
genome : 21,003,624 - 21,029,319 (25,696)
query : 1 - 3,995 (3,995/4,108)
6 exons
identity = 0.996
3'(0.996;1.000;0.991;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR007482 : Protein-tyrosine phosphatase-like, PTPLA
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto_nucl 11, cyto 10.5, nucl 8.5, mito 5.5, extr 5,
E.R._mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025749)
HIX0025749
HIT000057426
(
BX648779
)
(Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase 4; EC=4.2.1.134; 3-hydroxyacyl-CoA dehydratase 4; HACD4; Protein tyrosine phosphatase-like protein PTPLAD2; Protein-tyrosine phosphatase-like A domain-containing protein 2;)
genome : 21,003,624 - 21,031,635 (28,012)
query : 2 - 4,098 (4,097/4,113)
8 exons
identity = 0.970
3'(0.954;0.966;1.000;1.000;1.000;1.000;0.990;
1.000)5'
coverage = 1.000
InterPro :
IPR007482 : Protein-tyrosine phosphatase-like, PTPLA
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 19.5, cyto_mito 12.5, cyto 4.5, extr 3, nucl 2,
pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025749)
HIX0025749
HIT000599178 (
ENST00000495827
)
(Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase 4; EC=4.2.1.134; 3-hydroxyacyl-CoA dehydratase 4; HACD4; Protein tyrosine phosphatase-like protein PTPLAD2; Protein-tyrosine phosphatase-like A domain-containing protein 2;)
genome : 21,003,620 - 21,031,635 (28,016)
query : 1 - 4,161 (4,161/4,161)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 18.5, cyto_mito 13.5, cyto 7.5, extr 2, nucl 2,
pero 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025749)
HIX0025749
HIT000316759 (
NM_001010915
)
(Very-long-chain (3R)-3-hydroxyacyl-[acyl-carrier protein] dehydratase 4; EC=4.2.1.134; 3-hydroxyacyl-CoA dehydratase 4; HACD4; Protein tyrosine phosphatase-like protein PTPLAD2; Protein-tyrosine phosphatase-like A domain-containing protein 2;)
genome : 21,006,365 - 21,031,635 (25,271)
query : 1 - 1,416 (1,416/1,416)
7 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 18.5, cyto_mito 13.5, cyto 7.5, extr 2, nucl 2,
pero 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025749)
HIX0025749
HIT000592086 (
ENST00000488436
)
(Conserved hypothetical protein.)
genome : 21,015,136 - 21,026,744 (11,609)
query : 1 - 1,126 (1,126/1,126)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cyto_nucl 9, nucl 7.5, cyto 7.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0025749)
HIX0169881
HIT000527153 (
ENST00000429219
)
(Interferon alpha/beta/delta family protein.)
genome : 21,058,770 - 21,059,322 (553)
query : 1 - 553 (553/553)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0169881)
HIX0034856
HIT000195259
(
M28622
)
Representative transcript
(Interferon beta; IFN-beta; Fibroblast interferon; Precursor;)
genome : 21,077,104 - 21,077,943 (840)
query : 1 - 840 (840/840)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
InterPro :
IPR000471 : Interferon alpha/beta/delta
IPR009079 : Four-helical cytokine-like, core
IPR012351 : Four-helical cytokine, core
IPR015588 : Interferon beta
GO :
0005126 : Molecular Function : cytokine receptor binding
0005576 : Cellular Component : extracellular region
0006952 : Biological Process : defense response
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034856)
Ortholog candidate ( ->
Evola
)
Pongo
sp. (Orangutan) : ENSPPYT00000022366
Canis
sp. (Dog) : FJ194477
Mus
sp. (Mouse) : K00020
Rattus
sp. (Rat) : NM_019127
Macaca
sp. (Macaque) : XM_001108163
Monodelphis
sp. (Opossum) : XM_001373425
Equus
sp. (Horse) : XM_001917573
Pan
sp. (Chimpanzee) : XM_528553
Bos
sp. (Cow) : XM_603903
HIX0034856
HIT000199095 (
NM_002176
)
(Interferon beta; IFN-beta; Fibroblast interferon; Precursor;)
genome : 21,077,104 - 21,077,943 (840)
query : 1 - 840 (840/840)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034856)
HIX0034856
HIT000361511 (
ENST00000380232
)
(Interferon beta; IFN-beta; Fibroblast interferon; Precursor;)
genome : 21,077,104 - 21,077,943 (840)
query : 1 - 840 (840/840)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034856)
HIX0034856
HIT000194998
(
M25460
)
(Interferon beta precursor.)
genome : 21,077,105 - 21,077,939 (835)
query : 4 - 838 (835/838)
1 exon
identity = 0.982
3'(0.982)5'
coverage = 0.996
InterPro :
IPR000471 : Interferon alpha/beta/delta
IPR009079 : Four-helical cytokine-like, core
IPR012351 : Four-helical cytokine, core
IPR015588 : Interferon beta
GO :
0005126 : Molecular Function : cytokine receptor binding
0005576 : Cellular Component : extracellular region
0006952 : Biological Process : defense response
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034856)
HIX0034856
HIT000320826
(
V00546
)
(Interferon beta; IFN-beta; Fibroblast interferon; Precursor;)
genome : 21,077,105 - 21,077,932 (828)
query : 1 - 828 (828/828)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
InterPro :
IPR000471 : Interferon alpha/beta/delta
IPR009079 : Four-helical cytokine-like, core
IPR012351 : Four-helical cytokine, core
IPR015588 : Interferon beta
GO :
0005126 : Molecular Function : cytokine receptor binding
0005576 : Cellular Component : extracellular region
0006952 : Biological Process : defense response
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034856)
HIX0034856
HIT000320827
(
V00547
)
(Interferon beta; IFN-beta; Fibroblast interferon; Precursor;)
genome : 21,077,112 - 21,077,868 (757)
query : 1 - 757 (757/757)
1 exon
identity = 0.995
3'(0.995)5'
coverage = 1.000
InterPro :
IPR000471 : Interferon alpha/beta/delta
IPR009079 : Four-helical cytokine-like, core
IPR012351 : Four-helical cytokine, core
IPR015588 : Interferon beta
GO :
0005126 : Molecular Function : cytokine receptor binding
0005576 : Cellular Component : extracellular region
0006952 : Biological Process : defense response
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034856)
HIX0034856
HIT000335439
(
BC096151
)
(Interferon beta; IFN-beta; Fibroblast interferon; Precursor;)
genome : 21,077,251 - 21,077,868 (618)
query : 1 - 618 (618/622)
1 exon
identity = 0.997
3'(0.997)5'
coverage = 0.994
InterPro :
IPR000471 : Interferon alpha/beta/delta
IPR009079 : Four-helical cytokine-like, core
IPR012351 : Four-helical cytokine, core
IPR015588 : Interferon beta
GO :
0005126 : Molecular Function : cytokine receptor binding
0005576 : Cellular Component : extracellular region
0006952 : Biological Process : defense response
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034856)
HIX0034856
HIT000335440
(
BC096152
)
(Interferon beta; IFN-beta; Fibroblast interferon; Precursor;)
genome : 21,077,255 - 21,077,868 (614)
query : 1 - 614 (614/622)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 0.987
InterPro :
IPR000471 : Interferon alpha/beta/delta
IPR009079 : Four-helical cytokine-like, core
IPR012351 : Four-helical cytokine, core
IPR015588 : Interferon beta
GO :
0005126 : Molecular Function : cytokine receptor binding
0005576 : Cellular Component : extracellular region
0006952 : Biological Process : defense response
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034856)
HIX0034856
HIT000335441
(
BC096153
)
(Interferon beta; IFN-beta; Fibroblast interferon; Precursor;)
genome : 21,077,254 - 21,077,868 (615)
query : 1 - 615 (615/622)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 0.989
InterPro :
IPR000471 : Interferon alpha/beta/delta
IPR009079 : Four-helical cytokine-like, core
IPR012351 : Four-helical cytokine, core
IPR015588 : Interferon beta
GO :
0005126 : Molecular Function : cytokine receptor binding
0005576 : Cellular Component : extracellular region
0006952 : Biological Process : defense response
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034856)
HIX0034856
HIT000263466
(
BC069314
)
(Interferon beta; IFN-beta; Fibroblast interferon; Precursor;)
genome : 21,077,255 - 21,077,868 (614)
query : 1 - 614 (614/614)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
InterPro :
IPR000471 : Interferon alpha/beta/delta
IPR009079 : Four-helical cytokine-like, core
IPR012351 : Four-helical cytokine, core
IPR015588 : Interferon beta
GO :
0005126 : Molecular Function : cytokine receptor binding
0005576 : Cellular Component : extracellular region
0006952 : Biological Process : defense response
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034856)
HIX0034856
HIT000335438
(
BC096150
)
(Interferon beta; IFN-beta; Fibroblast interferon; Precursor;)
genome : 21,077,258 - 21,077,868 (611)
query : 1 - 611 (611/611)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
InterPro :
IPR000471 : Interferon alpha/beta/delta
IPR009079 : Four-helical cytokine-like, core
IPR012351 : Four-helical cytokine, core
IPR015588 : Interferon beta
GO :
0005126 : Molecular Function : cytokine receptor binding
0005576 : Cellular Component : extracellular region
0006952 : Biological Process : defense response
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034856)
HIX0034856
HIT000487536
(
AB451323
)
(Interferon beta; IFN-beta; Fibroblast interferon; Precursor;)
genome : 21,077,307 - 21,077,868 (562)
query : 1 - 562 (562/564)
1 exon
identity = 0.998
3'(0.998)5'
coverage = 0.996
InterPro :
IPR000471 : Interferon alpha/beta/delta
IPR009079 : Four-helical cytokine-like, core
IPR012351 : Four-helical cytokine, core
IPR015588 : Interferon beta
GO :
0005126 : Molecular Function : cytokine receptor binding
0005576 : Cellular Component : extracellular region
0006952 : Biological Process : defense response
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034856)
HIX0034856
HIT000487704
(
AB451491
)
(Interferon beta precursor.)
genome : 21,077,307 - 21,077,805 (499)
query : 1 - 499 (499/501)
1 exon
identity = 0.998
3'(0.998)5'
coverage = 0.996
InterPro :
IPR000471 : Interferon alpha/beta/delta
IPR009079 : Four-helical cytokine-like, core
IPR012351 : Four-helical cytokine, core
IPR015588 : Interferon beta
GO :
0005126 : Molecular Function : cytokine receptor binding
0005576 : Cellular Component : extracellular region
0006952 : Biological Process : defense response
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 13, cyto 11, cyto_nucl 9, extr 3, nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034856)
HIX0034856
HIT000487665
(
AB451452
)
(Interferon beta; IFN-beta; Fibroblast interferon; Precursor;)
genome : 21,077,308 - 21,077,868 (561)
query : 1 - 561 (561/561)
1 exon
identity = 0.998
3'(0.998)5'
coverage = 1.000
InterPro :
IPR000471 : Interferon alpha/beta/delta
IPR009079 : Four-helical cytokine-like, core
IPR012351 : Four-helical cytokine, core
IPR015588 : Interferon beta
GO :
0005126 : Molecular Function : cytokine receptor binding
0005576 : Cellular Component : extracellular region
0006952 : Biological Process : defense response
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 29
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0034856)
AL158206.8
19500001-19596660 F +
NCBI
AL133281.12
19596661-19755257 F +
NCBI
AL158077.15
19755258-19913157 F +
NCBI
AL591222.2
19913158-20026958 F +
NCBI
AL731856.14
20026959-20076090 F +
NCBI
AL445595.6
20076091-20235657 F +
NCBI
AL512635.8
20235658-20361132 F +
NCBI
AL513498.2
20361133-20487786 F +
NCBI
AL163193.5
20487787-20607431 F +
NCBI
AL627410.9
20607432-20610032 F +
NCBI
AL354879.12
20610033-20690302 F +
NCBI
AL445624.3
20690303-20867828 F -
NCBI
AL392163.8
20867829-20917097 F +
NCBI
AL662879.5
20917098-21006400 F -
NCBI
AL390882.12
21006401-21100000 F -
NCBI