bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0148522
HIT000482486 (
ENST00000399414
)
(Glyceraldehyde/Erythrose phosphate dehydrogenase family protein.)
genome : 108,585,042 - 108,585,926 (885)
query : 1 - 885 (885/885)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 20.5, mito_pero 12, cyto 6, nucl 3, cyto_plas 3,
cyto_golg 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0148522)
HIX0148522
HIT000639426 (
ENST00000540381
)
(Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain containing protein.)
genome : 108,585,421 - 108,585,860 (440)
query : 1 - 420 (420/420)
1 exon
identity = 0.955
5'(0.955)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 21, cyto 6, plas 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0148522)
HIX0056276
HIT000193306
(
L37378
)
(Retinal guanylyl cyclase 2; RETGC-2; EC=4.6.1.2; Guanylate cyclase 2F, retinal; Guanylate cyclase F; GC-F; Rod outer segment membrane guanylate cyclase 2; ROS-GC2; Precursor;)
genome : 108,616,135 - 108,725,301 (109,167)
query : 8 - 3,721 (3,714/3,723)
20 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;0.997;1.000;0.971)5'
coverage = 0.998
EC number :
EC 4.6.1.2
KEGG pathway :
00230 : Purine metabolism (100)
InterPro :
IPR001054 : Adenylyl cyclase class-3/4/guanylyl cyclase
IPR001245 : Serine-threonine/tyrosine-protein kinase catalytic domain
IPR001828 : Extracellular ligand-binding receptor
IPR011645 : Haem NO binding associated
IPR018297 : Adenylyl cyclase class-3/4/guanylyl cyclase, conserved site
IPR028082 : Periplasmic binding protein-like I
GO :
0004383 : Molecular Function : guanylate cyclase activity
0004672 : Molecular Function : protein kinase activity
0006182 : Biological Process : cGMP biosynthetic process
0006468 : Biological Process : protein phosphorylation
0009190 : Biological Process : cyclic nucleotide biosynthetic process
0016849 : Molecular Function : phosphorus-oxygen lyase activity
0035556 : Biological Process : intracellular signal transduction
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 9.5, extr_plas 9.5, extr 8.5, mito 6.5, pero 5,
cyto_mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056276)
HIX0056276
HIT000103260 (
ENST00000218006
)
(Retinal guanylyl cyclase 2; RETGC-2; EC=4.6.1.2; Guanylate cyclase 2F, retinal; Guanylate cyclase F; GC-F; Rod outer segment membrane guanylate cyclase 2; ROS-GC2; Precursor;)
genome : 108,616,135 - 108,725,301 (109,167)
query : 1 - 3,714 (3,714/3,714)
20 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 4.6.1.2
KEGG pathway :
00230 : Purine metabolism (100)
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 9.5, extr_plas 9.5, extr 8.5, mito 6.5, pero 5,
cyto_mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056276)
HIX0056276
HIT000198495 (
NM_001522
)
(Retinal guanylyl cyclase 2; RETGC-2; EC=4.6.1.2; Guanylate cyclase 2F, retinal; Guanylate cyclase F; GC-F; Rod outer segment membrane guanylate cyclase 2; ROS-GC2; Precursor;)
genome : 108,616,135 - 108,725,285 (109,151)
query : 1 - 3,698 (3,698/3,698)
20 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 4.6.1.2
KEGG pathway :
00230 : Purine metabolism (100)
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 9.5, extr_plas 9.5, extr 8.5, mito 6.5, pero 5,
cyto_mito 4
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056276)
HIX0056276
HIT000502667
(
BC144241
)
Representative transcript
(Retinal guanylyl cyclase 2; RETGC-2; EC=4.6.1.2; Guanylate cyclase 2F, retinal; Guanylate cyclase F; GC-F; Rod outer segment membrane guanylate cyclase 2; ROS-GC2; Precursor;)
genome : 108,616,174 - 108,719,236 (103,063)
query : 1 - 3,606 (3,606/3,606)
21 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;0.993;1.000)5'
coverage = 1.000
EC number :
EC 4.6.1.2
KEGG pathway :
00230 : Purine metabolism (100)
InterPro :
IPR001245 : Serine-threonine/tyrosine-protein kinase catalytic domain
IPR001828 : Extracellular ligand-binding receptor
IPR028082 : Periplasmic binding protein-like I
GO :
0004672 : Molecular Function : protein kinase activity
0006468 : Biological Process : protein phosphorylation
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 8.5, extr_plas 8.5, plas 7.5, pero 6, mito 5.5,
cyto_mito 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056276)
Ortholog candidate ( ->
Evola
)
Oryzias
sp. (Medaka) : AB015873
Danio
sp. (Zebrafish) : AY050504
Mus
sp. (Mouse) : AY651761
Equus
sp. (Horse) : ENSECAT00000014513
Gallus
sp. (Chicken) : ENSGALT00000001170
Macaca
sp. (Macaque) : ENSMMUT00000018517
Monodelphis
sp. (Opossum) : ENSMODT00000006633
Pongo
sp. (Orangutan) : ENSPPYT00000024058
Pan
sp. (Chimpanzee) : ENSPTRT00000041320
Tetraodon
sp. (Tetraodon) : GSTENT00005625001
Tetraodon
sp. (Tetraodon) : GSTENT00010532001
Rattus
sp. (Rat) : L36030
Takifugu
sp. (Fugu) : SINFRUT00000163673
Bos
sp. (Cow) : U95958
Canis
sp. (Dog) : XM_538138
HIX0016987
HIT000207395 (
NM_018698
)
(NTF2-related export protein 2; Protein p15-2;)
genome : 108,779,010 - 108,787,927 (8,918)
query : 1 - 2,706 (2,706/2,713)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.997
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, extr 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016987)
HIX0016987
HIT000006563
(
AK023289
)
Representative transcript
(NTF2-related export protein 2; Protein p15-2;)
genome : 108,779,010 - 108,787,913 (8,904)
query : 1 - 2,692 (2,692/2,692)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR002075 : Nuclear transport factor 2
IPR018222 : Nuclear transport factor 2, eukaryote
GO :
0005622 : Cellular Component : intracellular
0006810 : Biological Process : transport
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016987)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB172396
Gallus
sp. (Chicken) : AJ719764
Mus
sp. (Mouse) : AK144349
Danio
sp. (Zebrafish) : BC122134
Bos
sp. (Cow) : BC149046
Tetraodon
sp. (Tetraodon) : CR706647
Equus
sp. (Horse) : ENSECAT00000015766
Pongo
sp. (Orangutan) : ENSPPYT00000024059
Rattus
sp. (Rat) : ENSRNOT00000025912
Takifugu
sp. (Fugu) : SINFRUT00000135058
Monodelphis
sp. (Opossum) : XM_001378584
Canis
sp. (Dog) : XM_847926
Pan
sp. (Chimpanzee) : XR_023678
HIX0016987
HIT000103259 (
ENST00000218004
)
(NTF2-related export protein 2; Protein p15-2;)
genome : 108,779,010 - 108,787,913 (8,904)
query : 1 - 2,692 (2,692/2,692)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, extr 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016987)
HIX0016987
HIT000388181
(
BC120984
)
(NTF2-related export protein 2; Protein p15-2;)
genome : 108,779,021 - 108,786,569 (7,549)
query : 1 - 1,337 (1,337/1,338)
5 exons
identity = 0.999
5'(0.995;1.000;1.000;1.000;0.999)3'
coverage = 0.999
InterPro :
IPR002075 : Nuclear transport factor 2
IPR018222 : Nuclear transport factor 2, eukaryote
GO :
0005622 : Cellular Component : intracellular
0006810 : Biological Process : transport
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 27, cyto 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016987)
HIX0016987
HIT000388182
(
BC120985
)
(NTF2-related export protein 2; Protein p15-2;)
genome : 108,779,021 - 108,786,569 (7,549)
query : 1 - 1,337 (1,337/1,338)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 0.999
InterPro :
IPR002075 : Nuclear transport factor 2
IPR018222 : Nuclear transport factor 2, eukaryote
GO :
0005622 : Cellular Component : intracellular
0006810 : Biological Process : transport
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 26, extr 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016987)
HIX0016987
HIT000353387 (
ENST00000372107
)
(NTF2-related export protein 2; Protein p15-2;)
genome : 108,779,893 - 108,786,203 (6,311)
query : 1 - 937 (937/937)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto_nucl 16, cyto 11
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016987)
HIX0016987
HIT000657631 (
NM_001242617
)
(NTF2-related export protein 2; Protein p15-2;)
genome : 108,780,059 - 108,787,927 (7,869)
query : 1 - 2,616 (2,616/2,623)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 0.997
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto_nucl 16, cyto 11
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016987)
HIX0016987
HIT000002229
(
AF201942
)
(NTF2-related export protein 2; Protein p15-2;)
genome : 108,780,092 - 108,786,232 (6,141)
query : 1 - 888 (888/896)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 0.991
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto_nucl 16, cyto 11
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016987)
HIX0016987
HIT000036883
(
BC014888
)
(NTF2-related export protein 2; Protein p15-2;)
genome : 108,780,105 - 108,787,919 (7,815)
query : 1 - 2,562 (2,562/2,577)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR002075 : Nuclear transport factor 2
IPR018222 : Nuclear transport factor 2, eukaryote
GO :
0005622 : Cellular Component : intracellular
0006810 : Biological Process : transport
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto_nucl 16, cyto 11
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016987)
HIX0016987
HIT000353386 (
ENST00000372106
)
(NTF2-related export protein 2; Protein p15-2;)
genome : 108,780,105 - 108,787,919 (7,815)
query : 1 - 2,562 (2,562/2,562)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto_nucl 16, cyto 11
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016987)
HIX0016987
HIT000002267
(
AF212223
)
(NTF2-related export protein 2; Protein p15-2;)
genome : 108,780,110 - 108,786,232 (6,123)
query : 1 - 873 (873/881)
5 exons
identity = 0.995
5'(0.973;0.973;1.000;1.000;1.000)3'
coverage = 0.991
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11.5, mito 11, cyto_nucl 8, extr 5, cyto 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016987)
HIX0016987
HIT000657632 (
NM_001242618
)
(NTF2-related export protein 2; Protein p15-2;)
genome : 108,780,347 - 108,787,927 (7,581)
query : 1 - 2,577 (2,577/2,584)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 0.997
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11.5, mito 11, cyto_nucl 8, extr 5, cyto 3.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016987)
HIX0016987
HIT000353383 (
ENST00000372103
)
(NTF2-related export protein 2; Protein p15-2;)
genome : 108,780,347 - 108,786,435 (6,089)
query : 1 - 1,085 (1,085/1,085)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11.5, mito 11, cyto_nucl 8, extr 5, cyto 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016987)
HIX0016987
HIT000246434
(
AJ278323
)
(NTF2-related export protein 2; Protein p15-2;)
genome : 108,780,347 - 108,785,917 (5,571)
query : 1 - 567 (567/567)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR002075 : Nuclear transport factor 2
IPR018222 : Nuclear transport factor 2, eukaryote
GO :
0005622 : Cellular Component : intracellular
0006810 : Biological Process : transport
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 11.5, mito 11, cyto_nucl 8, extr 5, cyto 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016987)
HIX0016987
HIT000074929
(
AF246127
)
(NTF2-related export protein 2; Protein p15-2;)
genome : 108,781,273 - 108,785,917 (4,645)
query : 15 - 429 (415/429)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 0.967
InterPro :
IPR002075 : Nuclear transport factor 2
IPR018222 : Nuclear transport factor 2, eukaryote
GO :
0005622 : Cellular Component : intracellular
0006810 : Biological Process : transport
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto_nucl 16, cyto 11
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016987)
HIX0016987
HIT000246389
(
AJ277591
)
(NTF2-related export protein 2; Protein p15-2;)
genome : 108,781,273 - 108,785,917 (4,645)
query : 15 - 429 (415/429)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 0.967
InterPro :
IPR002075 : Nuclear transport factor 2
IPR018222 : Nuclear transport factor 2, eukaryote
GO :
0005622 : Cellular Component : intracellular
0006810 : Biological Process : transport
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 17, cyto_nucl 16, cyto 11
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016987)
HIX0198598
HIT000538135 (
ENST00000440201
)
(Dynamin, GTPase domain containing protein.)
genome : 108,811,707 - 108,813,518 (1,812)
query : 1 - 1,812 (1,812/1,812)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 26, cyto 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0198598)
HIX0028331
HIT000051371
(
BC035330
)
(Potassium voltage-gated channel subfamily E member 1-like protein; AMME syndrome candidate gene 2 protein;)
genome : 108,866,930 - 108,868,372 (1,443)
query : 1 - 1,443 (1,443/1,480)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 21, plas 4, nucl 2, cyto 2, cyto_nucl 2, pero 2,
extr_plas 2, cyto_pero 2, cysk_plas 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028331)
HIX0028331
HIT000331086
(
AK223306
)
(Potassium voltage-gated channel subfamily E member 1-like protein; AMME syndrome candidate gene 2 protein;)
genome : 108,866,930 - 108,868,397 (1,468)
query : 1 - 1,468 (1,468/1,499)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 19, plas 6, cyto 2, pero 2, lyso 2, cyto_pero 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028331)
HIX0028331
HIT000067378
(
AF086499
)
(Hypothetical short protein.)
genome : 108,866,930 - 108,867,245 (316)
query : 1 - 316 (316/325)
1 exon
identity = 0.997
3'(0.997)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 15, nucl 11.5, cyto_nucl 9, cyto 3.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028331)
HIX0028331
HIT000204057 (
NM_012282
)
(Potassium voltage-gated channel subfamily E member 1-like protein; AMME syndrome candidate gene 2 protein;)
genome : 108,866,929 - 108,868,393 (1,465)
query : 1 - 1,465 (1,465/1,465)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 21, plas 4, nucl 2, cyto 2, cyto_nucl 2, pero 2,
extr_plas 2, cyto_pero 2, cysk_plas 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028331)
HIX0028331
HIT000353381 (
ENST00000372101
)
(Potassium voltage-gated channel subfamily E member 1-like protein; AMME syndrome candidate gene 2 protein;)
genome : 108,866,929 - 108,868,393 (1,465)
query : 1 - 1,465 (1,465/1,465)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 21, plas 4, nucl 2, cyto 2, cyto_nucl 2, pero 2,
extr_plas 2, cyto_pero 2, cysk_plas 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028331)
HIX0028331
HIT000244596
(
AJ012743
)
(Potassium voltage-gated channel subfamily E member 1-like protein; AMME syndrome candidate gene 2 protein;)
genome : 108,866,931 - 108,868,393 (1,463)
query : 1 - 1,461 (1,461/1,461)
1 exon
identity = 0.995
3'(0.995)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 21, plas 4, nucl 2, cyto 2, cyto_nucl 2, pero 2,
extr_plas 2, cyto_pero 2, cysk_plas 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028331)
HIX0028331
HIT000537515 (
ENST00000439581
)
(Hypothetical short protein.)
genome : 108,867,473 - 108,877,915 (10,443)
query : 1 - 464 (464/464)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, cyto_nucl 10.5, cyto_mito 10.5, mito 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028331)
HIX0028331
HIT000395561
(
EF535525
)
(Potassium voltage-gated channel subfamily E member 1-like protein; AMME syndrome candidate gene 2 protein;)
genome : 108,867,711 - 108,868,304 (594)
query : 1 - 594 (594/594)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 21, plas 4, nucl 2, cyto 2, cyto_nucl 2, pero 2,
extr_plas 2, cyto_pero 2, cysk_plas 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028331)
HIX0028331
HIT000433789
(
AK314923
)
(Potassium voltage-gated channel subfamily E member 1-like protein; AMME syndrome candidate gene 2 protein;)
genome : 108,867,821 - 108,868,397 (577)
query : 1 - 577 (577/577)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 21, plas 4, nucl 2, cyto 2, cyto_nucl 2, pero 2,
extr_plas 2, cyto_pero 2, cysk_plas 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028331)
HIX0028331
HIT000342395
(
DQ192294
)
(Potassium voltage-gated channel subfamily E member 1-like protein; AMME syndrome candidate gene 2 protein;)
genome : 108,867,944 - 108,868,397 (454)
query : 1 - 454 (454/454)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 21, plas 5.5, extr_plas 3.5, nucl 2, cyto 2,
cyto_nucl 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028331)
HIX0028331
HIT000605232 (
ENST00000505075
)
(Long-chain-fatty-acid--CoA ligase 4; EC=6.2.1.3; Long-chain acyl-CoA synthetase 4; LACS 4;)
genome : 108,872,579 - 108,902,742 (30,164)
query : 1 - 390 (390/390)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.2.1.3
KEGG pathway :
00071 : Fatty acid metabolism (28)
01100 : Metabolic pathways (1346)
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto_nucl 13, nucl 11.5, cyto 11.5, extr 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028331)
HIX0177431
HIT000546234 (
ENST00000448300
)
(Conserved hypothetical protein.)
genome : 108,880,063 - 108,880,292 (230)
query : 1 - 230 (230/230)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 28, cyto 2.5, cyto_nucl 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177431)
HIX0028331
HIT000063041
(
AF030555
)
Representative transcript
(Long-chain-fatty-acid--CoA ligase 4; EC=6.2.1.3; Long-chain acyl-CoA synthetase 4; LACS 4;)
genome : 108,884,565 - 108,976,619 (92,055)
query : 4 - 5,025 (5,022/5,043)
16 exons
identity = 0.998
3'(0.997;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 0.999
EC number :
EC 6.2.1.3
KEGG pathway :
00071 : Fatty acid metabolism (28)
01100 : Metabolic pathways (1346)
InterPro :
IPR000873 : AMP-dependent synthetase/ligase
IPR020845 : AMP-binding, conserved site
GO :
0003824 : Molecular Function : catalytic activity
0008152 : Biological Process : metabolic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17, cyto 13
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028331)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB171788
Danio
sp. (Zebrafish) : BC057476
Mus
sp. (Mouse) : BC058663
Danio
sp. (Zebrafish) : BC091952
Bos
sp. (Cow) : BC151816
Rattus
sp. (Rat) : D85189
Equus
sp. (Horse) : ENSECAT00000018304
Oryzias
sp. (Medaka) : ENSORLT00000010087
Pongo
sp. (Orangutan) : ENSPPYT00000024061
Tetraodon
sp. (Tetraodon) : GSTENT00029359001
Takifugu
sp. (Fugu) : SINFRUT00000135057
Monodelphis
sp. (Opossum) : XM_001363462
Danio
sp. (Zebrafish) : XM_001919093
Canis
sp. (Dog) : XM_858064
Pan
sp. (Chimpanzee) : XR_020739
HIX0028331
HIT000201206 (
NM_004458
)
(Long-chain-fatty-acid--CoA ligase 4; EC=6.2.1.3; Long-chain acyl-CoA synthetase 4; LACS 4;)
genome : 108,884,565 - 108,976,621 (92,057)
query : 1 - 5,022 (5,022/5,039)
16 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.2.1.3
KEGG pathway :
00071 : Fatty acid metabolism (28)
01100 : Metabolic pathways (1346)
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17, cyto 13
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028331)
HIX0028331
HIT000208952 (
NM_022977
)
(Long-chain-fatty-acid--CoA ligase 4; EC=6.2.1.3; Long-chain acyl-CoA synthetase 4; LACS 4;)
genome : 108,884,565 - 108,976,621 (92,057)
query : 1 - 5,334 (5,334/5,351)
16 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.831;1.000)5'
coverage = 1.000
EC number :
EC 6.2.1.3
KEGG pathway :
00071 : Fatty acid metabolism (28)
01100 : Metabolic pathways (1346)
SOSUI :
MEMBRANE PROTEIN
PSORT :
E.R. 14, extr 7, mito_pero 3.83333, plas 3, pero 3,
mito 2.5, cyto_mito 2.16667
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028331)
HIX0028331
HIT000051266
(
BC034959
)
(Long-chain-fatty-acid--CoA ligase 4; EC=6.2.1.3; Long-chain acyl-CoA synthetase 4; LACS 4;)
genome : 108,884,565 - 108,976,484 (91,920)
query : 1 - 4,885 (4,885/4,900)
16 exons
identity = 0.999
3'(0.999;1.000;0.991;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.991)5'
coverage = 1.000
EC number :
EC 6.2.1.3
KEGG pathway :
00071 : Fatty acid metabolism (28)
01100 : Metabolic pathways (1346)
InterPro :
IPR000873 : AMP-dependent synthetase/ligase
IPR020845 : AMP-binding, conserved site
GO :
0003824 : Molecular Function : catalytic activity
0008152 : Biological Process : metabolic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17, cyto 13
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028331)
HIX0028331
HIT000059845
(
AB061713
)
(Long-chain-fatty-acid--CoA ligase 4; EC=6.2.1.3; Long-chain acyl-CoA synthetase 4; LACS 4;)
genome : 108,884,566 - 108,976,512 (91,947)
query : 1 - 4,917 (4,917/4,920)
16 exons
identity = 0.998
3'(0.998;1.000;1.000;1.000;1.000;0.994;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.993)5'
coverage = 0.999
EC number :
EC 6.2.1.3
KEGG pathway :
00071 : Fatty acid metabolism (28)
01100 : Metabolic pathways (1346)
InterPro :
IPR000873 : AMP-dependent synthetase/ligase
IPR020845 : AMP-binding, conserved site
GO :
0003824 : Molecular Function : catalytic activity
0008152 : Biological Process : metabolic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17, cyto 13
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028331)
HIX0028331
HIT000307635 (
ENST00000348502
)
(Long-chain-fatty-acid--CoA ligase 4; EC=6.2.1.3; Long-chain acyl-CoA synthetase 4; LACS 4;)
genome : 108,884,566 - 108,976,632 (92,067)
query : 1 - 5,032 (5,032/5,032)
16 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.2.1.3
KEGG pathway :
00071 : Fatty acid metabolism (28)
01100 : Metabolic pathways (1346)
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17, cyto 13
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028331)
HIX0028331
HIT000133430 (
ENST00000340800
)
(Long-chain-fatty-acid--CoA ligase 4; EC=6.2.1.3; Long-chain acyl-CoA synthetase 4; LACS 4;)
genome : 108,884,566 - 108,976,621 (92,056)
query : 1 - 5,333 (5,333/5,333)
16 exons
identity = 0.998
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.831;1.000)5'
coverage = 1.000
EC number :
EC 6.2.1.3
KEGG pathway :
00071 : Fatty acid metabolism (28)
01100 : Metabolic pathways (1346)
SOSUI :
MEMBRANE PROTEIN
PSORT :
E.R. 14, extr 7, mito_pero 3.83333, plas 3, pero 3,
mito 2.5, cyto_mito 2.16667
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028331)
HIX0028331
HIT000574299 (
ENST00000469796
)
(Long-chain-fatty-acid--CoA ligase 4; EC=6.2.1.3; Long-chain acyl-CoA synthetase 4; LACS 4;)
genome : 108,884,566 - 108,976,531 (91,966)
query : 1 - 5,225 (5,225/5,225)
16 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.2.1.3
KEGG pathway :
00071 : Fatty acid metabolism (28)
01100 : Metabolic pathways (1346)
SOSUI :
MEMBRANE PROTEIN
PSORT :
E.R. 14, extr 7, mito_pero 3.83333, plas 3, pero 3,
mito 2.5, cyto_mito 2.16667
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028331)
HIX0028331
HIT000424867
(
AK292070
)
(Long-chain-fatty-acid--CoA ligase 4; EC=6.2.1.3; Long-chain acyl-CoA synthetase 4; LACS 4;)
genome : 108,887,117 - 108,976,514 (89,398)
query : 1 - 2,366 (2,366/2,366)
16 exons
identity = 1.000
3'(0.997;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.2.1.3
KEGG pathway :
00071 : Fatty acid metabolism (28)
01100 : Metabolic pathways (1346)
InterPro :
IPR000873 : AMP-dependent synthetase/ligase
IPR020845 : AMP-binding, conserved site
GO :
0003824 : Molecular Function : catalytic activity
0008152 : Biological Process : metabolic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17, cyto 13
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028331)
HIX0028331
HIT000489539
(
AK294915
)
(Long-chain-fatty-acid--CoA ligase 4; EC=6.2.1.3; Long-chain acyl-CoA synthetase 4; LACS 4;)
genome : 108,887,126 - 108,976,493 (89,368)
query : 2 - 2,445 (2,444/2,445)
16 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
0.986;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.2.1.3
KEGG pathway :
00071 : Fatty acid metabolism (28)
01100 : Metabolic pathways (1346)
InterPro :
IPR000873 : AMP-dependent synthetase/ligase
IPR020845 : AMP-binding, conserved site
GO :
0003824 : Molecular Function : catalytic activity
0008152 : Biological Process : metabolic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
E.R. 14, extr 7, mito_pero 3.83333, plas 3, pero 3,
mito 2.5, cyto_mito 2.16667
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028331)
HIX0028331
HIT000059846
(
AB061714
)
(Long-chain-fatty-acid--CoA ligase 4; EC=6.2.1.3; Long-chain acyl-CoA synthetase 4; LACS 4;)
genome : 108,887,237 - 108,976,472 (89,236)
query : 1 - 2,204 (2,204/2,204)
16 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;0.994;1.000;
1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;0.990)5'
coverage = 1.000
EC number :
EC 6.2.1.3
KEGG pathway :
00071 : Fatty acid metabolism (28)
01100 : Metabolic pathways (1346)
InterPro :
IPR000873 : AMP-dependent synthetase/ligase
IPR020845 : AMP-binding, conserved site
GO :
0003824 : Molecular Function : catalytic activity
0008152 : Biological Process : metabolic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 17, cyto 13
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028331)
HIX0028331
HIT000613991 (
ENST00000514500
)
(Long-chain-fatty-acid--CoA ligase 4; EC=6.2.1.3; Long-chain acyl-CoA synthetase 4; LACS 4;)
genome : 108,887,255 - 108,912,338 (25,084)
query : 1 - 696 (696/696)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.2.1.3
KEGG pathway :
00071 : Fatty acid metabolism (28)
01100 : Metabolic pathways (1346)
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 17, extr 13, cyto_nucl 11.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028331)
HIX0028331
HIT000325735
(
Y12777
)
(Long-chain-fatty-acid--CoA ligase 4; EC=6.2.1.3; Long-chain acyl-CoA synthetase 4; LACS 4;)
genome : 108,887,258 - 108,976,460 (89,203)
query : 23 - 2,193 (2,171/2,193)
16 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000;1.000;
1.000;1.000;1.000;1.000;0.991;1.000;1.000;
1.000;1.000)5'
coverage = 0.990
EC number :
EC 6.2.1.3
KEGG pathway :
00071 : Fatty acid metabolism (28)
01100 : Metabolic pathways (1346)
InterPro :
IPR000873 : AMP-dependent synthetase/ligase
IPR020845 : AMP-binding, conserved site
GO :
0003824 : Molecular Function : catalytic activity
0008152 : Biological Process : metabolic process
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 16, cyto 14
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028331)
HIX0028331
HIT000426432
(
AK307566
)
(Long-chain-fatty-acid--CoA ligase 4 isoform 1.)
genome : 108,906,552 - 108,976,489 (69,938)
query : 2 - 1,949 (1,948/1,949)
13 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;0.986;1.000;1.000;
1.000;1.000;1.000;0.998;1.000;1.000)5'
coverage = 0.999
EC number :
EC 6.2.1.3
KEGG pathway :
00071 : Fatty acid metabolism (28)
01100 : Metabolic pathways (1346)
InterPro :
IPR000873 : AMP-dependent synthetase/ligase
IPR020459 : AMP-binding
IPR020845 : AMP-binding, conserved site
GO :
0003824 : Molecular Function : catalytic activity
0008152 : Biological Process : metabolic process
SOSUI :
MEMBRANE PROTEIN
PSORT :
E.R. 15, extr 5, mito_pero 4.33333, pero 4,
extr_plas 4, plas 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028331)
HIX0028331
HIT000605958 (
ENST00000505855
)
(Long-chain-fatty-acid--CoA ligase 4 isoform 1.)
genome : 108,924,548 - 108,935,376 (10,829)
query : 1 - 587 (587/587)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.2.1.3
KEGG pathway :
00071 : Fatty acid metabolism (28)
01100 : Metabolic pathways (1346)
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028331)
HIX0028331
HIT000602749 (
ENST00000502391
)
(Long-chain-fatty-acid--CoA ligase 4; EC=6.2.1.3; Long-chain acyl-CoA synthetase 4; LACS 4;)
genome : 108,926,042 - 108,976,554 (50,513)
query : 1 - 802 (802/802)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.2.1.3
KEGG pathway :
00071 : Fatty acid metabolism (28)
01100 : Metabolic pathways (1346)
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 12, E.R. 8, mito 6, plas 3, mito_pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028331)
HIX0028331
HIT000608044 (
ENST00000508092
)
(Long-chain-fatty-acid--CoA ligase 4; EC=6.2.1.3; Long-chain acyl-CoA synthetase 4; LACS 4;)
genome : 108,926,093 - 108,976,554 (50,462)
query : 1 - 637 (637/637)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.2.1.3
KEGG pathway :
00071 : Fatty acid metabolism (28)
01100 : Metabolic pathways (1346)
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 13, E.R. 9, mito 6, plas 3, cyto_mito 3,
mito_pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028331)
HIX0028331
HIT000605141 (
ENST00000504980
)
(Long-chain-fatty-acid--CoA ligase 4; EC=6.2.1.3; Long-chain acyl-CoA synthetase 4; LACS 4;)
genome : 108,926,098 - 108,976,442 (50,345)
query : 1 - 573 (573/573)
4 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000)5'
coverage = 1.000
EC number :
EC 6.2.1.3
KEGG pathway :
00071 : Fatty acid metabolism (28)
01100 : Metabolic pathways (1346)
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 13, E.R. 9, mito 6, plas 3, cyto_mito 3,
mito_pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028331)
HIX0028331
HIT000325755
(
Y13058
)
(Long-chain-fatty-acid--CoA ligase 4; EC=6.2.1.3; Long-chain acyl-CoA synthetase 4; LACS 4;)
genome : 108,926,554 - 108,976,460 (49,907)
query : 23 - 528 (506/528)
3 exons
identity = 0.976
3'(1.000;0.831;1.000)5'
coverage = 0.958
EC number :
EC 6.2.1.3
KEGG pathway :
00071 : Fatty acid metabolism (28)
01100 : Metabolic pathways (1346)
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 25, E.R. 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028331)
HIX0028331
HIT000574356 (
ENST00000469857
)
(Long-chain-fatty-acid--CoA ligase 4; EC=6.2.1.3; Long-chain acyl-CoA synthetase 4; LACS 4;)
genome : 108,926,554 - 108,976,460 (49,907)
query : 1 - 506 (506/506)
3 exons
identity = 0.976
3'(1.000;0.831;1.000)5'
coverage = 1.000
EC number :
EC 6.2.1.3
KEGG pathway :
00071 : Fatty acid metabolism (28)
01100 : Metabolic pathways (1346)
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 25, E.R. 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028331)
HIX0176722
HIT000011245
(
AK054631
)
Representative transcript
(Conserved hypothetical protein.)
genome : 108,928,340 - 108,930,572 (2,233)
query : 1 - 2,233 (2,233/2,233)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
mito 12, plas 8, extr_plas 8, extr 6, mito_pero 6,
mito_nucl 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0176722)
HIX0028331
HIT000604605 (
ENST00000504383
)
(Conserved hypothetical protein.)
genome : 108,938,880 - 108,976,504 (37,625)
query : 1 - 683 (683/683)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 19, cyto_nucl 8, cyto 6.5, nucl 4.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0028331)
HIX0056323
HIT000068248
(
AF090916
)
Representative transcript
(Conserved hypothetical protein.)
genome : 108,953,935 - 108,955,313 (1,379)
query : 1 - 1,379 (1,379/1,396)
1 exon
identity = 0.997
3'(0.997)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 17, mito 9, nucl 3.5, cyto_nucl 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056323)
HIX0056325
HIT000069978
(
AF116642
)
Representative transcript
(Conserved hypothetical protein.)
genome : 108,970,130 - 108,971,292 (1,163)
query : 35 - 1,199 (1,165/1,240)
1 exon
identity = 0.994
5'(0.994)3'
coverage = 0.965
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 16, extr 12, cyto_nucl 10.3333,
cyto_plas 8.83333
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056325)
HIX0056341
HIT000245014
(
AJ227865
)
Representative transcript
(Non-protein coding transcript.)
genome : 108,975,213 - 108,975,708 (496)
query : 1 - 496 (496/496)
1 exon
identity = 0.986
3'(0.986)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056341)
HIX0176874
HIT000488821
(
AK294197
)
Representative transcript
(Conserved hypothetical protein.)
genome : 108,975,929 - 108,978,188 (2,260)
query : 1 - 2,260 (2,260/2,260)
1 exon
identity = 0.998
5'(0.998)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 16.5, cyto_nucl 16, cyto 10.5, extr 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0176874)
HIX0177551
HIT000554598 (
ENST00000456664
)
(Ribosomal protein S7 domain containing protein.)
genome : 109,096,541 - 109,097,148 (608)
query : 1 - 608 (608/608)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 20, cyto 7.5, cyto_nucl 4.5, cysk 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177551)
HIX0176849
HIT000455450_04
(
DQ588919
)
Representative transcript
(Non-protein coding transcript.)
genome : 109,235,265 - 109,235,294 (30)
query : 1 - 30 (30/30)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0176849)
HIX0260749
HIT000601014 (
ENST00000497754
)
(Non-protein coding transcript.)
genome : 109,245,859 - 109,246,822 (964)
query : 1 - 236 (236/236)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260749)
HIX0260749
HIT000575695 (
ENST00000471255
)
(Transmembrane protein 164;)
genome : 109,245,915 - 109,310,624 (64,710)
query : 1 - 418 (418/418)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 17, extr 15
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260749)
HIX0260749
HIT000266110
(
BC085605
)
Representative transcript
(Transmembrane protein 164;)
genome : 109,246,362 - 109,416,774 (170,413)
query : 1 - 1,308 (1,308/1,339)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
InterPro :
IPR026508 : Transmembrane protein 164
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260749)
Ortholog candidate ( ->
Evola
)
Gallus
sp. (Chicken) : AJ721046
Mus
sp. (Mouse) : AK089342
Oryzias
sp. (Medaka) : ENSORLT00000013063
Pongo
sp. (Orangutan) : ENSPPYT00000024062
Pan
sp. (Chimpanzee) : ENSPTRT00000041334
Rattus
sp. (Rat) : ENSRNOT00000005633
Tetraodon
sp. (Tetraodon) : GSTENT00020381001
Takifugu
sp. (Fugu) : SINFRUT00000138870
Macaca
sp. (Macaque) : XM_001099672
Monodelphis
sp. (Opossum) : XM_001363537
Equus
sp. (Horse) : XM_001489834
Canis
sp. (Dog) : XM_858098
Bos
sp. (Cow) : XM_867692
HIX0260749
HIT000566588 (
ENST00000461715
)
(Transmembrane protein 164;)
genome : 109,308,329 - 109,414,739 (106,411)
query : 1 - 711 (711/711)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 14, mito 8, cyto 7, extr_plas 7
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260749)
HIX0260806
HIT000697053 (
ENST00000585195
)
(Non-protein coding transcript.)
genome : 109,325,346 - 109,325,446 (101)
query : 1 - 101 (101/101)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260806)
HIX0260806
HIT000725837 (
NR_039774
)
(Non-protein coding transcript.)
genome : 109,325,346 - 109,325,446 (101)
query : 1 - 101 (101/101)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260806)
HIX0260690
HIT000013698
(
AK057084
)
Representative transcript
(Conserved hypothetical protein.)
genome : 109,418,140 - 109,421,014 (2,875)
query : 1 - 2,875 (2,875/2,875)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, nucl 11, cyto_nucl 8, extr_plas 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260690)
HIX0260690
HIT000264783
(
BC071977
)
(Conserved hypothetical protein.)
genome : 109,418,935 - 109,420,426 (1,492)
query : 1 - 1,492 (1,492/1,509)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, nucl 11, cyto_nucl 8, extr_plas 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260690)
HIX0260690
HIT000031124
(
BC002716
)
(Conserved hypothetical protein.)
genome : 109,418,975 - 109,420,426 (1,452)
query : 1 - 1,452 (1,452/1,469)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, nucl 11, cyto_nucl 8, extr_plas 8
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260690)
HIX0260690
HIT000002655
(
AK000180
)
(Conserved hypothetical protein.)
genome : 109,419,107 - 109,420,901 (1,795)
query : 1 - 1,794 (1,794/1,807)
1 exon
identity = 0.999
5'(0.999)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 24, cyto 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0260690)
HIX0016991
HIT000261777
(
BC065214
)
(Hypothetical short protein.)
genome : 109,437,414 - 109,438,708 (1,295)
query : 1 - 1,295 (1,295/1,380)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, extr 10, nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016991)
HIX0016991
HIT000654806 (
NM_001171689
)
(AMME syndrome candidate gene 1 protein;)
genome : 109,437,414 - 109,683,461 (246,048)
query : 1 - 5,604 (5,604/5,618)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 13, extr 10, cyto_mito 10
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016991)
HIX0016991
HIT000205421 (
NM_015365
)
(AMME syndrome candidate gene 1 protein;)
genome : 109,437,414 - 109,561,380 (123,967)
query : 1 - 5,417 (5,417/5,431)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, cyto_nucl 10.5, nucl 6.5, mito 5, extr 3,
E.R. 3
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016991)
HIX0016991
HIT000365855 (
NM_001025580
)
(AMME syndrome candidate gene 1 protein;)
genome : 109,437,414 - 109,561,380 (123,967)
query : 1 - 5,306 (5,306/5,320)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 10.5, cyto_nucl 10.5, nucl 7.5, extr 5, mito 5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016991)
HIX0016991
HIT000099456
(
BC051895
)
(Hypothetical short protein.)
genome : 109,437,414 - 109,439,729 (2,316)
query : 1 - 2,317 (2,317/2,331)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, extr 10, nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016991)
HIX0016991
HIT000108603 (
ENST00000262844
)
(AMME syndrome candidate gene 1 protein;)
genome : 109,437,414 - 109,561,467 (124,054)
query : 1 - 5,504 (5,504/5,504)
6 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, cyto_nucl 10.5, nucl 6.5, mito 5, extr 3,
E.R. 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016991)
HIX0093650
HIT000083051
(
AY007113
)
Representative transcript
(Hypothetical short protein.)
genome : 109,437,414 - 109,438,732 (1,319)
query : 1 - 1,319 (1,319/1,319)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0093650)
HIX0016991
HIT000011935
(
AK055321
)
(Hypothetical short protein.)
genome : 109,437,415 - 109,439,550 (2,136)
query : 1 - 2,136 (2,136/2,136)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 15, extr 10, nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016991)
HIX0016991
HIT000095081
(
BC037983
)
(Hypothetical protein.)
genome : 109,437,539 - 109,439,784 (2,246)
query : 12 - 2,257 (2,246/2,271)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 0.995
SOSUI :
MEMBRANE PROTEIN
PSORT :
nucl 13, extr 11, cyto_nucl 10.5, cyto 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016991)
HIX0016991
HIT000090969
(
BC024762
)
(Hypothetical short protein.)
genome : 109,439,637 - 109,440,539 (903)
query : 1 - 903 (903/942)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11.5, extr 11, cyto_nucl 7.5, mito 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016991)
HIX0016991
HIT000260115
(
BC060813
)
(AMME syndrome candidate gene 1 protein;)
genome : 109,439,614 - 109,561,312 (121,699)
query : 2 - 3,039 (3,038/3,053)
5 exons
identity = 0.999
3'(0.999;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR002733 : AMMECR1 domain
IPR023473 : AMMECR1
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 10.5, cyto_nucl 10.5, nucl 7.5, extr 5, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016991)
HIX0016991
HIT000353339 (
ENST00000372059
)
(AMME syndrome candidate gene 1 protein;)
genome : 109,439,600 - 109,561,312 (121,713)
query : 1 - 3,052 (3,052/3,052)
5 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 10.5, cyto_nucl 10.5, nucl 7.5, extr 5, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016991)
HIX0016991
HIT000006911
(
AK023637
)
(Hypothetical short protein.)
genome : 109,439,615 - 109,441,469 (1,855)
query : 1 - 1,855 (1,855/1,855)
1 exon
identity = 0.999
3'(0.999)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11.5, extr 11, cyto_nucl 7.5, mito 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016991)
HIX0016991
HIT000057444
(
BX648797
)
(AMME syndrome candidate gene 1 protein;)
genome : 109,439,636 - 109,561,341 (121,706)
query : 2 - 3,045 (3,044/3,065)
5 exons
identity = 0.999
3'(0.999;1.000;1.000;1.000;1.000)5'
coverage = 0.999
InterPro :
IPR002733 : AMMECR1 domain
IPR023473 : AMMECR1
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 10.5, cyto_nucl 10.5, nucl 7.5, extr 5, mito 5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016991)
HIX0016991
HIT000016297
(
AK091430
)
Representative transcript
(AMME syndrome candidate gene 1 protein;)
genome : 109,439,638 - 109,683,461 (243,824)
query : 1 - 3,381 (3,381/3,381)
8 exons
identity = 0.999
3'(0.999;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
InterPro :
IPR002733 : AMMECR1 domain
IPR023473 : AMMECR1
IPR027485 : AMMECR1, N-terminal
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 13, extr 10, cyto_mito 10
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016991)
Ortholog candidate ( ->
Evola
)
Mus
sp. (Mouse) : AK051736
Danio
sp. (Zebrafish) : BC067667
Equus
sp. (Horse) : ENSECAT00000011114
Oryzias
sp. (Medaka) : ENSORLT00000013094
Pongo
sp. (Orangutan) : ENSPPYT00000024063
Tetraodon
sp. (Tetraodon) : GSTENT00020384001
Takifugu
sp. (Fugu) : SINFRUT00000169947
Rattus
sp. (Rat) : XM_001057408
Macaca
sp. (Macaque) : XM_001099875
Gallus
sp. (Chicken) : XM_001234034
Monodelphis
sp. (Opossum) : XM_001375889
Pan
sp. (Chimpanzee) : XM_529104
Canis
sp. (Dog) : XM_549183
Bos
sp. (Cow) : XR_028567
HIX0016991
HIT000353337 (
ENST00000372057
)
(AMME syndrome candidate gene 1 protein;)
genome : 109,439,638 - 109,683,461 (243,824)
query : 1 - 3,380 (3,380/3,380)
8 exons
identity = 1.000
3'(1.000;1.000;1.000;1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 13, extr 10, cyto_mito 10
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016991)
HIX0016991
HIT000004177
(
AK001703
)
(AMME syndrome candidate gene 1 protein isoform 2.)
genome : 109,439,638 - 109,560,903 (121,266)
query : 1 - 2,715 (2,715/2,715)
6 exons
identity = 0.999
3'(0.999;1.000;1.000;1.000;0.991;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 22, cyto_nucl 12.5, extr 4, mito 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016991)
HIX0016991
HIT000244129
(
AJ007014
)
(AMME syndrome candidate gene 1 protein;)
genome : 109,441,618 - 109,561,467 (119,850)
query : 1 - 1,300 (1,300/1,300)
6 exons
identity = 0.999
3'(1.000;1.000;1.000;1.000;1.000;0.998)5'
coverage = 1.000
InterPro :
IPR002733 : AMMECR1 domain
IPR023473 : AMMECR1
IPR027485 : AMMECR1, N-terminal
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, cyto_nucl 10.5, nucl 6.5, mito 5, extr 3,
E.R. 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016991)
HIX0016991
HIT000433462
(
AK314596
)
(AMME syndrome candidate gene 1 protein;)
genome : 109,441,748 - 109,561,311 (119,564)
query : 1 - 1,014 (1,014/1,014)
6 exons
identity = 0.998
3'(1.000;1.000;1.000;0.991;1.000;0.998)5'
coverage = 1.000
InterPro :
IPR002733 : AMMECR1 domain
IPR023473 : AMMECR1
IPR027485 : AMMECR1, N-terminal
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, cyto_nucl 11, nucl 7.5, mito 5, E.R. 3
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016991)
HIX0016991
HIT000577983 (
ENST00000473662
)
(AMME syndrome candidate gene 1 protein;)
genome : 109,462,708 - 109,560,999 (98,292)
query : 1 - 418 (418/418)
3 exons
identity = 1.000
3'(1.000;1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 12, cyto_nucl 9.66667, nucl 8.5, cyto 7.5,
cyto_pero 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016991)
HIX0147977
HIT000471894 (
ENST00000386148
)
(Non-protein coding transcript.)
genome : 109,468,213 - 109,468,291 (79)
query : 1 - 79 (79/79)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0147977)
HIX0147977
HIT000486454 (
NR_004379
)
(Non-protein coding transcript.)
genome : 109,468,217 - 109,468,288 (72)
query : 1 - 72 (72/72)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0147977)
HIX0177002
HIT000516782 (
ENST00000418848
)
(Conserved hypothetical protein.)
genome : 109,548,648 - 109,550,449 (1,802)
query : 1 - 561 (561/561)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, mito 5, cyto_nucl 3.33333, cyto 2.5,
E.R._mito 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177002)
HIX0016991
HIT000600004 (
ENST00000496695
)
(AMME syndrome candidate gene 1 protein;)
genome : 109,552,378 - 109,560,984 (8,607)
query : 1 - 546 (546/546)
2 exons
identity = 1.000
3'(1.000;1.000)5'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 27, cyto 2, mito 2, cyto_mito 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016991)
HIX0016991
HIT000244346
(
AJ009817
)
(Conserved hypothetical protein.)
genome : 109,552,379 - 109,552,765 (387)
query : 1 - 387 (387/387)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, cysk 7, nucl 4, cyto 4, cyto_nucl 4
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016991)
HIX0056505
HIT000353334 (
ENST00000372054
)
(G-protein, gamma subunit family protein.)
genome : 109,589,700 - 109,590,201 (502)
query : 1 - 502 (502/502)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 21, nucl 6, cyto 3, mito_nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056505)
HIX0016989
HIT000206571 (
NM_017698
)
(Transmembrane protein 164 family protein.)
genome : 109,245,863 - 109,421,015 (175,153)
query : 1 - 4,978 (4,978/4,993)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 18, mito 6, lyso 3, E.R._mito 3, cyto_nucl 2.5
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016989)
HIX0016989
HIT000018982
(
AK094127
)
Representative transcript
(Transmembrane protein 164;)
genome : 109,245,863 - 109,421,014 (175,152)
query : 1 - 2,355 (2,355/2,355)
7 exons
identity = 0.999
5'(1.000;1.000;1.000;1.000;0.990;0.999;1.000)3'
coverage = 1.000
InterPro :
IPR026508 : Transmembrane protein 164
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 18, mito 6, lyso 3, E.R._mito 3, cyto_nucl 2.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016989)
HIX0016989
HIT000353352 (
ENST00000372072
)
(Transmembrane protein 164 family protein.)
genome : 109,245,863 - 109,421,012 (175,150)
query : 1 - 4,975 (4,975/4,975)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
extr 18, mito 6, lyso 3, E.R._mito 3, cyto_nucl 2.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016989)
HIX0016989
HIT000353353 (
ENST00000372073
)
(Transmembrane protein 164 family protein.)
genome : 109,246,323 - 109,421,016 (174,694)
query : 1 - 5,567 (5,567/5,567)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016989)
HIX0016989
HIT000210476 (
NM_032227
)
(Transmembrane protein 164 family protein.)
genome : 109,246,342 - 109,421,015 (174,674)
query : 1 - 5,569 (5,569/5,584)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016989)
HIX0016989
HIT000353348 (
ENST00000372068
)
(Transmembrane protein 164 family protein.)
genome : 109,246,342 - 109,421,012 (174,671)
query : 1 - 5,566 (5,566/5,566)
7 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016989)
HIX0016989
HIT000009606
(
AK026332
)
(Transmembrane protein 164;)
genome : 109,246,343 - 109,420,901 (174,559)
query : 2 - 2,565 (2,564/2,587)
6 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;0.998;1.000)3'
coverage = 1.000
InterPro :
IPR026508 : Transmembrane protein 164
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016989)
HIX0016989
HIT000112986 (
ENST00000288381
)
(Transmembrane protein 164 family protein.)
genome : 109,246,343 - 109,421,016 (174,674)
query : 1 - 5,452 (5,452/5,452)
5 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
plas 30
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016989)
HIX0016989
HIT000340030
(
BC111767
)
(Transmembrane protein 164 family protein.)
genome : 109,246,852 - 109,420,639 (173,788)
query : 1 - 1,393 (1,393/1,393)
2 exons
identity = 0.994
5'(0.983;0.997)3'
coverage = 1.000
InterPro :
IPR026508 : Transmembrane protein 164
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 15.5, cyto_nucl 13, extr 8, cyto 7.5
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016989)
HIX0016989
HIT000568942 (
ENST00000464177
)
(Transmembrane protein 164 family protein.)
genome : 109,414,646 - 109,425,962 (11,317)
query : 21 - 761 (741/761)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 0.974
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 15.5, cyto_nucl 13.5, nucl 6.5, mito 5, pero 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016989)
BX322556.5
108000001-108058940 F +
NCBI
AL732308.7
108058941-108147346 F +
NCBI
AL670405.3
108147347-108289699 F +
NCBI
AL928646.3
108289700-108354085 F +
NCBI
AL731796.4
108354086-108377886 F +
NCBI
AL390836.12
108377887-108545368 F +
NCBI
AL034403.19
108545369-108613602 F +
NCBI
AL031387.4
108613603-108792365 F -
NCBI
AL118496.22
108792366-108917730 F +
NCBI
AL138968.18
108917731-108980892 F +
NCBI
AL590647.12
108980893-109038998 F +
NCBI
AC003013.1
109038999-109210450 F +
NCBI
AL590384.7
109210451-109218070 F +
NCBI
AL360224.14
109218071-109373232 F +
NCBI
AL359079.15
109373233-109460499 F -
NCBI
AL079334.7
109460500-109524059 F -
NCBI
AL031319.5
109524060-109600000 F +
NCBI