bases per tick :
500
200
100
50
20
10
5
2
kb first site :
main :
All Human Genes
JIGSAW prediction
ESTs assembly
homology :
UCSC
CCDS
Pseudogene.org
Conserved regions (
Segmental duplication
P.troglodytes
P.abelii
M.mulatta
M.musculus
R.norvegicus
C.familiaris
E.caballus
B.taurus
M.domestica
G.gallus
D.rerio
O.latipes
T.nigroviridis
T.rubripes
)
gene prediction :
FGENESH
GenScan
HMMgene
tRNA
show... :
SNPs
ESTs(summary)
ESTs(detail)
CAGE tag(summary)
CAGE tag(detail)
sequence viewer :
( start, end )
( middle, total length )
= (
,
)
HIX0177127
HIT000524696 (
ENST00000426762
)
(Conserved hypothetical protein.)
genome : 25,609,470 - 25,609,925 (456)
query : 1 - 456 (456/456)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 16, cyto 6.5, cyto_nucl 4.5, extr 4, pero 2,
golg 2, extr_plas 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177127)
HIX0213561
HIT000127452_02 (
ENST00000331821
)
(Ran binding domain containing protein.)
genome : 25,663,713 - 25,664,556 (844)
query : 6 - 837 (832/837)
1 exon
identity = 0.953
3'(0.953)5'
coverage = 0.994
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 21, extr 4, mito 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213561)
HIX0213561
HIT000600101_02 (
ENST00000496795
)
(Ran binding domain containing protein.)
genome : 25,663,839 - 25,664,444 (606)
query : 1 - 606 (606/606)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19, nucl 6, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213561)
HIX0177083
HIT000521848 (
ENST00000423914
)
(Hypothetical short protein.)
genome : 25,896,456 - 25,911,661 (15,206)
query : 1 - 550 (550/550)
4 exons
identity = 1.000
5'(1.000;1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 19, cyto_nucl 6, nucl 5.5, cyto 5.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177083)
HIX0022214
HIT000040803
(
BC029525
)
Representative transcript
(Melanoma-associated antigen B18; MAGE-B18 antigen;)
genome : 26,156,460 - 26,158,852 (2,393)
query : 1 - 1,811 (1,811/1,827)
3 exons
identity = 0.997
5'(0.992;0.998;0.996)3'
coverage = 0.999
InterPro :
IPR002190 : MAGE homology domain
IPR021072 : Melanoma associated antigen, MAGE, N-terminal
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14.5, cyto_nucl 12, cyto 8.5, mito 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022214)
Ortholog candidate ( ->
Evola
)
Macaca
sp. (Macaque) : AB168198
Mus
sp. (Mouse) : AK046641
Rattus
sp. (Rat) : BC097441
Bos
sp. (Cow) : ENSBTAT00000026054
Pongo
sp. (Orangutan) : ENSPPYT00000023564
Equus
sp. (Horse) : XM_001493391
Pan
sp. (Chimpanzee) : XM_528911
Canis
sp. (Dog) : XM_849655
HIX0022214
HIT000215073 (
NM_173699
)
(Melanoma-associated antigen B18; MAGE-B18 antigen;)
genome : 26,156,460 - 26,158,853 (2,394)
query : 1 - 1,812 (1,812/1,812)
3 exons
identity = 0.999
5'(1.000;0.999;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14.5, cyto_nucl 12, cyto 8.5, mito 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022214)
HIX0022214
HIT000124151 (
ENST00000325250
)
(Melanoma-associated antigen B18; MAGE-B18 antigen;)
genome : 26,156,460 - 26,158,852 (2,393)
query : 1 - 1,811 (1,811/1,811)
3 exons
identity = 1.000
5'(1.000;1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 13.5, cyto_nucl 12, cyto 9.5, mito 5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022214)
HIX0022214
HIT000013975
(
AK057361
)
(Melanoma-associated antigen B18; MAGE-B18 antigen;)
genome : 26,156,515 - 26,158,852 (2,338)
query : 1 - 1,758 (1,758/1,758)
3 exons
identity = 0.995
5'(1.000;0.996;0.995)3'
coverage = 1.000
InterPro :
IPR002190 : MAGE homology domain
IPR021072 : Melanoma associated antigen, MAGE, N-terminal
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 14.5, cyto_nucl 12, cyto 8.5, mito 6
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0022214)
HIX0177244
HIT000534137 (
ENST00000436203
)
(MAGE homology domain containing protein.)
genome : 26,165,891 - 26,166,398 (508)
query : 1 - 508 (508/508)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 26, nucl 3, cyto 3, cyto_nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177244)
HIX0176650
HIT000514863 (
ENST00000416929
)
(Melanoma associated antigen, MAGE, N-terminal domain containing protein.)
genome : 26,178,718 - 26,180,013 (1,296)
query : 1 - 1,296 (1,296/1,296)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 28.5, cyto_nucl 16.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0176650)
HIX0177368
HIT000542699 (
ENST00000444765
)
(Conserved hypothetical protein.)
genome : 26,188,169 - 26,189,030 (862)
query : 1 - 862 (862/862)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11.5, cyto_nucl 10.5, extr 10, nucl 8.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177368)
HIX0016709
HIT000262531
(
BC067286
)
Representative transcript
(Melanoma-associated antigen B6; Cancer/testis antigen 3.4; CT3.4; MAGE-B6 antigen;)
genome : 26,210,557 - 26,213,766 (3,210)
query : 1 - 1,957 (1,957/1,986)
2 exons
identity = 0.996
5'(0.989;0.997)3'
coverage = 1.000
InterPro :
IPR002190 : MAGE homology domain
IPR021072 : Melanoma associated antigen, MAGE, N-terminal
SOSUI :
SOLUBLE PROTEIN
PSORT :
plas 17, nucl 5, E.R. 3, cyto 2, pero 2, cyto_pero 2,
E.R._golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016709)
Ortholog candidate ( ->
Evola
)
Pongo
sp. (Orangutan) : ENSPPYT00000023565
Macaca
sp. (Macaque) : XM_001092607
Pan
sp. (Chimpanzee) : XM_001144272
Bos
sp. (Cow) : XM_001250743
Equus
sp. (Horse) : XM_001917450
Pan
sp. (Chimpanzee) : XM_528913
Canis
sp. (Dog) : XM_849961
HIX0016709
HIT000214908 (
NM_173523
)
(Melanoma-associated antigen B6; Cancer/testis antigen 3.4; CT3.4; MAGE-B6 antigen;)
genome : 26,210,557 - 26,213,763 (3,207)
query : 1 - 1,949 (1,949/1,949)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
plas 17, nucl 5, E.R. 3, cyto 2, pero 2, cyto_pero 2,
E.R._golg 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016709)
HIX0016709
HIT000360314 (
ENST00000379034
)
(Melanoma-associated antigen B6; Cancer/testis antigen 3.4; CT3.4; MAGE-B6 antigen;)
genome : 26,210,557 - 26,213,763 (3,207)
query : 1 - 1,949 (1,949/1,949)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
plas 17, nucl 5, E.R. 3, cyto 2, pero 2, cyto_pero 2,
E.R._golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016709)
HIX0016709
HIT000022415
(
AK097561
)
(Melanoma-associated antigen B6; Cancer/testis antigen 3.4; CT3.4; MAGE-B6 antigen;)
genome : 26,210,557 - 26,213,762 (3,206)
query : 1 - 1,948 (1,948/1,948)
2 exons
identity = 0.999
5'(0.989;0.999)3'
coverage = 1.000
InterPro :
IPR002190 : MAGE homology domain
IPR021072 : Melanoma associated antigen, MAGE, N-terminal
SOSUI :
SOLUBLE PROTEIN
PSORT :
plas 17, nucl 5, E.R. 3, cyto 2, pero 2, cyto_pero 2,
E.R._golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016709)
HIX0016709
HIT000265427
(
BC074920
)
(Melanoma-associated antigen B6; Cancer/testis antigen 3.4; CT3.4; MAGE-B6 antigen;)
genome : 26,211,927 - 26,213,219 (1,293)
query : 1 - 1,293 (1,293/1,293)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
InterPro :
IPR002190 : MAGE homology domain
IPR021072 : Melanoma associated antigen, MAGE, N-terminal
SOSUI :
SOLUBLE PROTEIN
PSORT :
plas 17, nucl 5, E.R. 3, cyto 2, pero 2, cyto_pero 2,
E.R._golg 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016709)
HIX0177458
HIT000548364 (
ENST00000450430
)
(MAGE homology domain containing protein.)
genome : 26,218,159 - 26,218,764 (606)
query : 1 - 606 (606/606)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 14.5, cyto_nucl 12.5, extr 6, nucl 5.5, cysk 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177458)
HIX0056590
HIT000714030 (
ENST00000602297
)
(MAGE homology domain containing protein.)
genome : 26,234,286 - 26,236,387 (2,102)
query : 1 - 1,216 (1,216/1,216)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, cyto_mito 8, nucl 7, extr_plas 3, plas 2.5,
extr 2.5, pero 2, golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056590)
HIX0056590
HIT000725032 (
NM_001271752
)
(MAGE homology domain containing protein.)
genome : 26,234,286 - 26,236,387 (2,102)
query : 1 - 1,216 (1,216/1,216)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, cyto_mito 8, nucl 7, extr_plas 3, plas 2.5,
extr 2.5, pero 2, golg 2
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056590)
HIX0056590
HIT000360309 (
ENST00000379029
)
(MAGE homology domain containing protein.)
genome : 26,235,419 - 26,236,246 (828)
query : 1 - 828 (828/828)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 13.5, cyto_mito 8, nucl 7, extr_plas 3, plas 2.5,
extr 2.5, pero 2, golg 2
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056590)
HIX0016710
HIT000025012
(
AL133110
)
Representative transcript
(Melanoma-associated antigen B3; MAGE-B3 antigen;)
genome : 26,236,672 - 26,242,938 (6,267)
query : 1 - 6,266 (6,266/6,290)
1 exon
identity = 0.998
5'(0.998)3'
coverage = 1.000
InterPro :
IPR002190 : MAGE homology domain
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 11.5, cyto_mito 7.33333, plas 7, extr 6,
E.R._mito 2.33333, nucl 2, mito 2
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016710)
HIX0016710
HIT000544148 (
ENST00000446214
)
(Melanoma-associated antigen B5.)
genome : 26,242,020 - 26,242,775 (756)
query : 1 - 756 (756/756)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 23, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0016710)
HIX0177285
HIT000536624 (
ENST00000438690
)
(Conserved hypothetical protein.)
genome : 26,363,353 - 26,364,359 (1,007)
query : 1 - 650 (650/650)
2 exons
identity = 0.991
5'(0.987;0.994)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
cyto 19.5, cyto_nucl 13.5, nucl 4.5, extr 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177285)
HIX0177291
HIT000537257 (
ENST00000439323
)
(Conserved hypothetical protein.)
genome : 26,515,053 - 26,523,720 (8,668)
query : 1 - 1,624 (1,624/1,624)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
mito 15, cyto 9, cyto_nucl 7.66667, cyto_pero 7.66667,
nucl 4, pero 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177291)
HIX0177032
HIT000518849 (
ENST00000420915
)
(Conserved hypothetical protein.)
genome : 26,575,792 - 26,576,447 (656)
query : 1 - 656 (656/656)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, mito 8, nucl 3
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177032)
HIX0056153
HIT000072246
(
AF164963
)
Representative transcript
(Hypothetical protein.)
genome : 26,576,454 - 26,579,169 (2,716)
query : 1 - 2,714 (2,714/2,729)
1 exon
identity = 0.997
5'(0.997)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 18, nucl 11
H-InvDB(Transcript view)
H-InvDB(Locus view)
DDBJ
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0056153)
HIX0213501
HIT000320706 (
NR_001559
)
(Hypothetical protein.)
genome : 26,576,454 - 26,579,169 (2,716)
query : 1 - 2,716 (2,716/2,716)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, nucl 9, cyto 6
RefSeq
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213501)
HIX0213501
HIT000682277 (
ENST00000569334
)
(Hypothetical protein.)
genome : 26,576,454 - 26,579,169 (2,716)
query : 1 - 2,716 (2,716/2,716)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 16, nucl 9, cyto 6
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0213501)
HIX0177184
HIT000529802 (
ENST00000431868
)
(AP complex, mu/sigma subunit domain containing protein.)
genome : 26,675,408 - 26,675,624 (217)
query : 1 - 217 (217/217)
1 exon
identity = 1.000
3'(1.000)5'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
extr 13, cyto 9, nucl 5, golg 4
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0177184)
HIX0176619
HIT000504301 (
ENST00000402913
)
(Ribosomal protein L30, ferredoxin-like fold domain containing protein.)
genome : 26,704,143 - 26,706,072 (1,930)
query : 1 - 758 (758/758)
2 exons
identity = 1.000
5'(1.000;1.000)3'
coverage = 1.000
SOSUI :
MEMBRANE PROTEIN
PSORT :
cyto 18.5, cyto_nucl 11.5, mito 6, nucl 3.5
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0176619)
HIX0176961
HIT000513494 (
ENST00000415560
)
(High mobility group, HMG-I/HMG-Y family protein.)
genome : 26,766,146 - 26,767,207 (1,062)
query : 1 - 1,062 (1,062/1,062)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0176961)
HIX0176961
HIT000355397 (
ENST00000374117
)
(High mobility group, HMG-I/HMG-Y family protein.)
genome : 26,766,146 - 26,766,469 (324)
query : 1 - 324 (324/324)
1 exon
identity = 1.000
5'(1.000)3'
coverage = 1.000
SOSUI :
SOLUBLE PROTEIN
PSORT :
nucl 32
Ensembl
cDNA-genome Alignment
cDNA Multiple Alignment
(HIX0176961)
AC112918.3
25500001-25610959 F -
NCBI
AC097263.6
25610960-25669038 F +
NCBI
AC121341.2
25669039-25828300 F -
NCBI
AC121342.6
25828301-25944480 F +
NCBI
AC122693.1
25944481-26095009 F -
NCBI
AC129850.7
26095010-26184106 F -
NCBI
AC005297.1
26184107-26359602 F -
NCBI
AC073614.17
26359603-26487347 F -
NCBI
AC079178.20
26487348-26599942 F -
NCBI
AC005345.1
26599943-26760138 F -
NCBI
AC107293.4
26760139-26914347 F -
NCBI
AC133437.2
26914348-26988314 F -
NCBI
AC112493.2
26988315-27100000 F -
NCBI